Citrus Sinensis ID: 027090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSLLSG
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccccHHHHHHHHHcccccccccccccccccEEEcEEEEEcccEEEEEEcccccccccccHHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHcccccHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEEcccccccccccHHcccHHHHHHccccccHHHHHHcccEcccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHHEEEEEEEcccHcccccccHHHHHHccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHccEccc
Coil and Loop (DISEMBL)
mgervvdgdwkptspsngerTVVLLGrtgngksatgnsiLGRKAFkasagssgvtktcemkttvlkdgqvvnvidtpglfdlsagsefvGKEIVKCLGMAKDGIHAFLVVFSVtnrfsqeeetavhrlpnlfgknvFDYMIVVFTGGDDLEDHEKTLEDflghecpkpLKEILQLCDnrcvlfdnktkdeakGTEQVRQLLSLVNSVIvqnggqpytdeLKVTSLLSG
Flexible Loop (DISEMBL)
mgervvdgdwkptspsngertvvllgrtgngksatgnsilgrkafkasagssgvtktCEMKttvlkdgqvvnVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAvhrlpnlfgknVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVivqnggqpytdelkvtsllsg
Low Complexity Region (SEG)
MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSLLSG
Disordered region (IsUnstruct)
*****************************************************VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKT*******EQVRQLLSLVNSVIVQNGG***************
Disordered Region (DISOPRED)
*********************VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTS****
Disordered Region (DISEMBL)
**********KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAF**********KTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSLLSG
Disordered Region (DISPRO)
*****************GERTVVLLGRTGNGKSAT*****GRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSLLS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSLLSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.925	0.597	0.556	3e-56
O81025	463	Putative protein PHLOEM P	no	no	0.881	0.434	0.522	8e-56
Q8K3K9	310	GTPase IMAP family member	yes	no	0.846	0.622	0.407	3e-33
Q9NUV9	329	GTPase IMAP family member	yes	no	0.877	0.607	0.364	4e-33
Q99JY3	219	GTPase IMAP family member	no	no	0.807	0.840	0.373	1e-28
Q8NHV1	300	GTPase IMAP family member	no	no	0.850	0.646	0.345	1e-27
Q8WWP7	306	GTPase IMAP family member	no	no	0.872	0.650	0.341	2e-26
Q8ND71	665	GTPase IMAP family member	no	no	0.846	0.290	0.379	5e-26
Q75N62	688	GTPase IMAP family member	no	no	0.789	0.261	0.4	6e-26
Q8BWF2	308	GTPase IMAP family member	no	no	0.846	0.626	0.35	4e-25

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  218 bits (554), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/212 (55%), Positives = 145/212 (68%), Gaps = 1/212 (0%)

Query: 9   DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG 68
           ++  + P   E  +VL+GRTGNGKSATGNSI+  K FK+   SSGVT  C     V  +G
Sbjct: 33  EFSASQPHPVE-NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEG 91

Query: 69  QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
            ++NVIDTPGLFDLS  +EF+GKEIVKCL +A  G+HA L+V SV  R SQEEE  +  L
Sbjct: 92  PILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTL 151

Query: 129 PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188
             LFG  + DY+IVVFTGGD LED   TLED+LG   P  LK +L LC  R +LFDNKTK
Sbjct: 152 QVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTK 211

Query: 189 DEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           D+ K T+QV +LL L++ V  QN   PYTDE+
Sbjct: 212 DDEKKTKQVHELLKLIDLVRKQNNNIPYTDEM 243

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  216 bits (551), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 105/201 (52%), Positives = 142/201 (70%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           + +VL+GRTGNGKS+TGN++LG K FK+   + GVT  CEM    ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
            D     + +  EI+ CL MA++GIHA L+V S   R S+EEE+ V+ L  +FG  + DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
            IVVFTGGDDLE+ ++TL+D+    CP+ L ++L+LC  R VLFDNK+KDE K  EQV+Q
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query: 200 LLSLVNSVIVQNGGQPYTDEL 220
           LL+ V +V  Q GG PYT +L
Sbjct: 186 LLARVENVGEQTGGIPYTYQL 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 124/199 (62%), Gaps = 6/199 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VLLG+TG GKS+TGNSILGRKAF +   +  +TK CE K   + DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                    KEI +C+ +   G HA L+V  +   ++ EE  A  +L ++F K    +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
           ++ T  DDLED +  + ++L    P+ L+E++    NR  LF+NK    A+  EQ RQLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKASG-AEQEEQKRQLL 206

Query: 202 SLVNSVIVQNGGQPYTDEL 220
           +LV S++ +NGG+ +T+++
Sbjct: 207 TLVQSMVRENGGKYFTNKM 225

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 123/206 (59%), Gaps = 6/206 (2%)

Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
           P N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
           DTPG+FD    +    KEI++C+ +   G HA L+V  +  R+++EE  A  ++  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
               +MI++FT  DDL D    L D+L  E P+ +++++ +  +R    +NK    A+  
Sbjct: 144 RARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATG-AEQE 199

Query: 195 EQVRQLLSLVNSVIVQNGGQPYTDEL 220
            Q  QLL L+  V+ +N    YT+ +
Sbjct: 200 AQRAQLLGLIQRVVRENKEGCYTNRM 225

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 6/190 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VLLG+TG GKS+TGNSILG K F +   +  +TK CE + +   DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                    +EI + + +   G HA L+V  +  R++ EE  A  ++ ++FGK    +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
           ++ T  DDLED +  + ++L  + PK  +E++    NR  LF+N+    A+  EQ  QLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASG-AEKEEQKMQLL 206

Query: 202 SLVNSVIVQN 211
           +LV S+ + +
Sbjct: 207 TLVQSMFLSS 216

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 120/200 (60%), Gaps = 6/200 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG+GKSAT N+ILG + F +   +  VTK C+ K +    G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                +   KEI +C+  +  G HA ++V  +  R+++EE+  V  +  +FGK+   +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
           ++FT  ++LE   ++  DF+  +    LK I++ C NRC  F N  K  +A+   QV++L
Sbjct: 129 ILFTRKEELEG--QSFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185

Query: 201 LSLVNSVIVQNGGQPYTDEL 220
           + L+  ++  N G  ++D++
Sbjct: 186 VELIEKMVQCNEGAYFSDDI 205

Homo sapiens (taxid: 9606)

>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 121/211 (57%), Gaps = 12/211 (5%)

Query: 14  SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNV 73
           S     R ++L+GRTG GKSATGNSILG++ F +  G++ VT+ C   +    D   V V
Sbjct: 22  SRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEV 80

Query: 74  IDTPGLFDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF 132
           +DTP +F         G +E   C  ++  G HA L+V  +  RF+ +++ AV ++ ++F
Sbjct: 81  VDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMF 139

Query: 133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192
           G++V  +M++VFT  +DL     +L D++ +   + L+E++  C  R   FDN+    A 
Sbjct: 140 GEDVLKWMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----AT 193

Query: 193 GTE---QVRQLLSLVNSVIVQNGGQPYTDEL 220
           G E   QV QLL +V  +++++ G  Y++E+
Sbjct: 194 GREQEAQVEQLLGMVEGLVLEHKGAHYSNEV 224

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Homo sapiens (taxid: 9606)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 10/203 (4%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG--- 78
           +VL+GR+G GKSATGNSILG   F +   +  VTKT +       DGQ V V+DTP    
Sbjct: 441 IVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQ 499

Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           + D+      + +E+ +CL   + G   F++VF +  RF++E++TAV +L  +FG +   
Sbjct: 500 MLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFTK 558

Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
           Y I++FT  +DL      LEDF+ +   K L+ I + C  R   F+NK   +A+ T QV+
Sbjct: 559 YAIMLFTRKEDL--GAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQET-QVK 615

Query: 199 QLLSLVNSVIVQNG--GQPYTDE 219
            LL+ VN +  ++G  G P+T E
Sbjct: 616 ALLTKVNDLRKESGWSGYPHTQE 638

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score =  117 bits (294), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 10/190 (5%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++LLGR+G GKSATGN+ILGR AF +   +  VT + +     L D Q V V+DTP  F 
Sbjct: 478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-FI 535

Query: 82  LSAGSE----FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
            + G+E     + +EI  CL + ++G+  F++V  +  RF+QE+E  V +L   F +N+ 
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENIM 594

Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197
            YMIV+FT  +DL D +  L D+  +   K LK+IL+ C+ R   F+NK   E + T QV
Sbjct: 595 KYMIVLFTRKEDLGDGD--LHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQET-QV 651

Query: 198 RQLLSLVNSV 207
           + LL + NS+
Sbjct: 652 KGLLKIANSL 661

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 120/200 (60%), Gaps = 7/200 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++L+G++G GKSATGNSIL R AF++      VT+T + +T    +G+ + V+DTP +F+
Sbjct: 29  ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
             A ++ + K+I  C  +   G H  L+V  +  RF+ E+  AV  +  +FG  V  +MI
Sbjct: 88  SKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDAMAVRMVKEVFGVGVMRHMI 146

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
           V+FT  +DLE  EK+LE+F+ H   + L+ + Q C  R   F+N+   +E +G  Q+ +L
Sbjct: 147 VLFTRKEDLE--EKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQG--QLAEL 202

Query: 201 LSLVNSVIVQNGGQPYTDEL 220
           ++LV  +  +  G  ++++L
Sbjct: 203 MALVRRLEQECEGSFHSNDL 222

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
255539412	339	aig1, putative [Ricinus communis] gi|223	0.973	0.654	0.747	2e-94
224146305	335	predicted protein [Populus trichocarpa]	0.964	0.656	0.731	6e-93
296089429	345	unnamed protein product [Vitis vinifera]	0.964	0.637	0.727	6e-93
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.964	0.647	0.727	7e-93
224136037	259	predicted protein [Populus trichocarpa]	0.912	0.803	0.745	5e-88
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.942	0.614	0.720	6e-88
363814318	336	uncharacterized protein LOC100807910 [Gl	0.964	0.654	0.704	4e-87
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.964	0.645	0.696	5e-81
357470421	340	AIG1 [Medicago truncatula] gi|355506550|	0.929	0.623	0.650	5e-80
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.956	0.633	0.640	6e-80

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 166/222 (74%), Positives = 187/222 (84%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D DW+ TSPSNG RTVVL+GRTGNGKSATGNS+LGRKAFK+ A SSGVT TCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + TV+ DGQV+NV+DTPGLFD SA SEFVGKEIVKC+ MAKDGIHA LVVFSV  RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+  L  LFG  +FDYMIVVFTGGD+LED+++TLED+LG ECP+PL+EIL LC NR 
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKV 222
           VLFDNKTKDE K  EQV QLLSLVN VI +NGGQPYTDEL V
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFV 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (886), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 161/220 (73%), Positives = 188/220 (85%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D DW+  SPSNG RT+VL+GRTGNGKSATGNSILGRKAFK+ A SSGVT +CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + TVL+DGQ++NVIDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA LVVFSV  RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+  L  LFG  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLKE+L LC+NR 
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           VLF+NKTKD  KG EQV++LLSLVN VI QNGGQPY+DEL
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDEL 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (886), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 160/220 (72%), Positives = 191/220 (86%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV  RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+H L  LFG  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR 
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           VLFDNKTKDEAK  EQV++LLSLVNSVI+QNGGQPYTDEL
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDEL 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  345 bits (886), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 160/220 (72%), Positives = 191/220 (86%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV  RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EE A+H L  LFG  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR 
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           VLFDNKTKDEAK  EQV++LLSLVNSVI+QNGGQPYTDEL
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDEL 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 155/208 (74%), Positives = 180/208 (86%)

Query: 13  TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN 72
            SPSNG RTVVL+GRTGNGKSATGNSILG+KAFK+ A SSGVT TCE+++TVL DGQ++N
Sbjct: 1   ASPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIIN 60

Query: 73  VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF 132
           VIDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA LVVFSV  RFSQEEE A+  L  LF
Sbjct: 61  VIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLF 120

Query: 133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192
           G  + DYMIVVFTGGD+LED+++TLED+LG ECP+PLKE+L+LC+NR VLFDNKTKD  K
Sbjct: 121 GSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLKLCENRRVLFDNKTKDLFK 180

Query: 193 GTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
             EQ+++LLSLVN VI QN GQPY+DEL
Sbjct: 181 RAEQMQELLSLVNRVIEQNAGQPYSDEL 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 184/215 (85%)

Query: 6   VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
           +D DW+ TS SN  RTVVL+GRTGNGKSATGN+ILGRKAFK+ A SS V+ +CE+KTT L
Sbjct: 20  IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79

Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
            +GQ+VNVIDTPGLFDLSAGSEFVGKEIVKC+ +AKDGIHA +VVFSV  RF++EEETA+
Sbjct: 80  NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139

Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
             L  LFG  + DYMIVVFTGGD+LE++++TLED+LG ECP+PLKEIL LC+NRCVLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199

Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           KTKDE K   QV+QLLS VN V+ +NGG+PYTDEL
Sbjct: 200 KTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDEL 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 155/220 (70%), Positives = 183/220 (83%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +  DW+ TS SN  RTVVL+GRTGNGKSATGN+ILGRK FK+ A SS V+ +CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           +TT L DGQ+VNVIDTPGLFDLS GSEFVGKEIVKC+ +AKDGIHA +VVFSV  RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           EETA+  L  LFG  + DYMIVVFTGGD+LE++ +TLED+LG ECP+PLKEIL LCDNRC
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           VLFDNKTKDE K   QV+QLLS VN+V+ +NGG+PYTDEL
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDEL 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 156/224 (69%), Positives = 184/224 (82%), Gaps = 4/224 (1%)

Query: 1   MGERVVDGDWKP--TSPSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56
           MG   ++ DW+   TSP+NG   RTVVL+GRTGNGKSATGNSILGRKAFK+ A SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR 116
           T E++TTVL DGQ ++VIDTPG+FD SAGS+FVGKEIVKC+ MAKDGIHA LVVFSV  R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 117 FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176
           FS EEE A+  L  LFG  + +YMIVVFTGGD+LE++E+TLED+LG  CP PLK+IL LC
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180

Query: 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
            NRCVLFDNKTKDE +   QV+QLLSLVN +++QNGGQPY+DEL
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDEL 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470421|ref|XP_003605495.1| AIG1 [Medicago truncatula] gi|355506550|gb|AES87692.1| AIG1 [Medicago truncatula]

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 138/212 (65%), Positives = 172/212 (81%)

Query: 9   DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG 68
           DW+  S  N  +T+VL+GRTGNGKSATGNSILG+K F + A SSG+T +CEM+T+ + DG
Sbjct: 11  DWEFASSPNDVKTLVLVGRTGNGKSATGNSILGKKVFNSRASSSGITTSCEMQTSEMNDG 70

Query: 69  QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
           Q VNVID+PGLFD S G E +GKEI+KC+ +AKDGIHA +VVFSV  RF++EEE A+  +
Sbjct: 71  QTVNVIDSPGLFDFSVGIELLGKEIIKCIDLAKDGIHAVIVVFSVRTRFTEEEENALRNV 130

Query: 129 PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188
             LFG  + D+MIVVFTGGD+LE++++TL+D+LG +CP+PLK IL LC NRCVLFDNKTK
Sbjct: 131 QKLFGSKIVDHMIVVFTGGDELEENDETLDDYLGRDCPEPLKAILALCGNRCVLFDNKTK 190

Query: 189 DEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           DE K TEQV+QLLS VN V+ QNGGQPY DEL
Sbjct: 191 DEKKQTEQVQQLLSFVNMVVSQNGGQPYRDEL 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 141/220 (64%), Positives = 177/220 (80%), Gaps = 2/220 (0%)

Query: 1   MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
           MG   +  DW+    +NG RT+VL+GRTGNGKSATGNSILGRKAF++ + S+GVT TCE+
Sbjct: 6   MGGSAISDDWE--FAANGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 61  KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
           + TVL+DGQ+++VIDTPGLFD SA  EF+G EIVKC+ MAKDGIHA LVV SV  RFS+E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
           E+ AV  L   FG  + DYM++VFTGGDDLED+E+TLED+LG +CP+PLK+IL +C NR 
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183

Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           VLFDNK+KD  K  +Q++QLLSLVN V+  NGG+PYTD+L
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDL 223

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.960	0.640	0.604	1.1e-69
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.872	0.563	0.582	1.2e-56
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.894	0.655	0.529	1.4e-55
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.925	0.627	0.526	2.3e-55
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.881	0.434	0.522	6.3e-53
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.929	0.650	0.476	2.1e-52
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.881	0.601	0.502	7.2e-52
TAIR|locus:2012678	225	AT1G33830 [Arabidopsis thalian	0.872	0.884	0.477	1.1e-48
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.872	0.661	0.490	6e-48
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.903	0.613	0.490	6.9e-47

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 133/220 (60%), Positives = 176/220 (80%)

Query:     1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
             MG  +++ DW+  S SN +RT+VL+GRTGNGKSATGNSILGRKAF++ A + GVT TCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
             +  V +DG ++NV+DTPGLFDLS  ++F+GKEIV+C+ +A+DGIHA L+VFSV  R ++E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSV-RRLAEE 124

Query:   121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
             E+T +  L  LFG  + DYMIVVFTGGD+LE++E+TLE++L   CP+ LKEIL +CDNR 
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184

Query:   181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
             VLF+NKT D+ K  EQV++LLSLV SV+ QN G+PY+DEL
Sbjct:   185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDEL 224

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 116/199 (58%), Positives = 140/199 (70%)

Query:    22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
             +VL+GRTGNGKSATGNSI+  K FK+   SSGVT  C     V  +G ++NVIDTPGLFD
Sbjct:    45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104

Query:    82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
             LS  +EF+GKEIVKCL +A  G+HA L+V SV  R SQEEE  +  L  LFG  + DY+I
Sbjct:   105 LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLI 164

Query:   142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
             VVFTGGD LED   TLED+LG   P  LK +L LC  R +LFDNKTKD+ K T+QV +LL
Sbjct:   165 VVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELL 224

Query:   202 SLVNSVIVQNGGQPYTDEL 220
              L++ V  QN   PYTDE+
Sbjct:   225 KLIDLVRKQNNNIPYTDEM 243

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 108/204 (52%), Positives = 145/204 (71%)

Query:    16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
             S     +VL+GRTGNGKSATGNS++G+K F + A +SGVT  C+    V KDG  +NVID
Sbjct:    13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72

Query:    76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
             TPGLFDLS  +E++ KEIV+CL +A+ GIHA L+V S   R +QEEE  +  L  LFG  
Sbjct:    73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132

Query:   136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
             + DY++VVFTGGD LE+ ++TLED+LG +CP  +KE++++  NR V+ DNKT DE K  E
Sbjct:   133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKKAE 192

Query:   196 QVRQLLSLVNSVIVQNGGQPYTDE 219
             QV +LLSLV+ +     G+ YTD+
Sbjct:   193 QVHKLLSLVDDIRRSKCGEAYTDD 216

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 111/211 (52%), Positives = 149/211 (70%)

Query:    10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ 69
             W+  S S   + VVL+GRTGNGKSATGNSI+GRK F++   + GVT  C+    V  DG 
Sbjct:    26 WELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGP 85

Query:    70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP 129
             ++NVIDTPGLFDL+  +EF+ KEIV CL +A++G+HA ++V S++ R SQEEE A+  L 
Sbjct:    86 IINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQ 145

Query:   130 NLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKD 189
              LFG  + DY+IVVFT GD LED   TLED+L + CP+ LK +L+LC  R V+FDN+TKD
Sbjct:   146 MLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRTKD 205

Query:   190 EAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
             E    +QV+QLL  V ++  + GG P+TD +
Sbjct:   206 EGVKAKQVQQLLVHVAAIEKETGGNPFTDTM 236

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 105/201 (52%), Positives = 142/201 (70%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKS+TGN++LG K FK+   + GVT  CEM    ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
              D     + +  EI+ CL MA++GIHA L+V S   R S+EEE+ V+ L  +FG  + DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
              IVVFTGGDDLE+ ++TL+D+    CP+ L ++L+LC  R VLFDNK+KDE K  EQV+Q
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query:   200 LLSLVNSVIVQNGGQPYTDEL 220
             LL+ V +V  Q GG PYT +L
Sbjct:   186 LLARVENVGEQTGGIPYTYQL 206

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 101/212 (47%), Positives = 148/212 (69%)

Query:     9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG 68
             D +  S S   + +VL+GRTGNGKSATGNS++G++ F++   ++GVT  CE    V   G
Sbjct:     9 DLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCG 68

Query:    69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
               +NVIDTPGLFDLS  +E++ +EI+ CL +A+DG+HA ++V SV  R SQEEE  ++ L
Sbjct:    69 TGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEATLNTL 128

Query:   129 PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188
               +FG  + DY++V+FTGGD+LE +  TL+D+L   CP+ LK +L+LC  R +LFDN+T 
Sbjct:   129 QVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRRILFDNRTT 188

Query:   189 DEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
             DE K  +QV++LL+ V ++     G P+TDE+
Sbjct:   189 DEGKKVKQVQELLAHVAAIEKSTSGIPFTDEM 220

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 101/201 (50%), Positives = 142/201 (70%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKSATGNS++G+  F + A ++GVTKTC+    V   G  +NVIDTPGL
Sbjct:    14 KNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSRINVIDTPGL 73

Query:    80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
             FDLS  +EF+ KEI+ CL +A+ G+H  ++V SV  R +QEEE  +  L  LFG  + DY
Sbjct:    74 FDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQVLFGNEILDY 133

Query:   140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
             +IV+FTGGD+LE + +TL+D+    CP  LK +L LCD+R V+F+N TKD+ K  EQV+Q
Sbjct:   134 LIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDKHKKVEQVQQ 193

Query:   200 LLSLVNSVIVQNGGQPYTDEL 220
              L+LV  V  +N G+P+  ++
Sbjct:   194 FLALVAKVEERNEGKPFRGKM 214

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2012678 AT1G33830 [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 95/199 (47%), Positives = 137/199 (68%)

Query:    22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
             ++LLGR+ NGKS+TGN+I+G K F+ +     + + C+M   +++DG ++NVIDTPGL +
Sbjct:    11 LLLLGRSENGKSSTGNTIIGEKYFEVNLFGRDMDQRCKMFRALIEDGPIINVIDTPGLLE 70

Query:    82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
              S   +++ KEI+ CL MA++GIHA L V S+TNR SQ EE   + L  +F   + DY I
Sbjct:    71 SSVSGDYLSKEIMNCLTMAEEGIHAVLFVLSITNRISQREEFTFNTLQQIFDDKILDYFI 130

Query:   142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
             VVFTGGD+LE   +TL+D+L   CP+ L  +L+LC  R VLF+NKTKD+ K  +Q+ QLL
Sbjct:   131 VVFTGGDELEADNQTLDDYLREGCPEFLTRVLKLCGGRKVLFNNKTKDKGKRNKQLNQLL 190

Query:   202 SLVNSVIVQNGGQPYTDEL 220
             + V  +  QNGG PYT+ +
Sbjct:   191 AHVTDIRQQNGGIPYTENM 209

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 102/208 (49%), Positives = 142/208 (68%)

Query:    15 PSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN 72
             PS  E  R +VL+G TGNGKS+TGNS++G++ F          KTC+ KT    DGQ++N
Sbjct:     7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKAKTL---DGQIIN 60

Query:    73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF 132
             VIDTPGLFDLS  ++++ KEI+ CL +   G+HA ++V SV     +EEE A+++L  LF
Sbjct:    61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120

Query:   133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192
             G  + DY++V+FTGGD LE   KTL+D+L   CP+ LK +L+LC  R VLF+NKT DE K
Sbjct:   121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLKTVLRLCGGRRVLFNNKTTDEVK 180

Query:   193 GTEQVRQLLSLVNSVIVQNGGQP-YTDE 219
               EQV+QLL+ V ++   NGG+  +T+E
Sbjct:   181 KIEQVKQLLAHVEAIENLNGGKALFTEE 208

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 106/216 (49%), Positives = 145/216 (67%)

Query:     6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
             V+ DWKP      ERT+VLLGRTGNGKSATGNSILG+  F++ A    +TK C++  + L
Sbjct:    10 VENDWKP------ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
              +G  +NVIDTPGLF  S+ ++F  +EIV+CL +AK GI A L+VFS+ NR ++EE++ +
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123

Query:   126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
               L  LFG  + DY+IVVFT  D LE  E TL+D+L  +CP+  +EIL+ CD+R VLFDN
Sbjct:   124 RTLKILFGSQIVDYIIVVFTNEDALECGE-TLDDYL-EDCPE-FQEILEECDDRKVLFDN 180

Query:   186 K-TKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
                   +K   QV  LL+LV  +  +N G+ Y  +L
Sbjct:   181 SYNAPVSKKDRQVHDLLNLVEQISKKNNGKSYMADL 216

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
pfam04548	211	pfam04548, AIG1, AIG1 family	1e-94
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	3e-90
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	1e-10
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-10
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	8e-08
cd00880	161	cd00880, Era_like, E	1e-07
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	3e-06
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	1e-05
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	2e-05
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	4e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-04
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	0.001
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	0.004

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  275 bits (705), Expect = 1e-94
 Identities = 109/201 (54%), Positives = 151/201 (75%), Gaps = 5/201 (2%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGNSILGRKAF++   + GVTKTC++ +    DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
           FDLS  ++F+ KEI++CL +A+ G HA L+V S+  RF++EEE A+  L  LFG  + DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
           MIVVFT  DDLED   +L+D+L   CP+ LKE+L+ C  R VLF+NK  D  +  EQV+Q
Sbjct: 119 MIVVFTRKDDLED--DSLDDYLSDGCPEFLKEVLRECGGRYVLFNNK-ADGEEKEEQVQQ 175

Query: 200 LLSLVNSVIVQNGGQPYTDEL 220
           LL+LV +++ +NGG+PYT++L
Sbjct: 176 LLALVEAIVKENGGKPYTNDL 196

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  263 bits (675), Expect = 3e-90
 Identities = 101/202 (50%), Positives = 142/202 (70%), Gaps = 6/202 (2%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGN+ILGRK F++   +SGVTKTC+ ++ V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
           FD S   E + KEI++CL ++  G HAFL+V  +  RF++EEE AV  L  LFG+ V D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPL-GRFTEEEEQAVEELQELFGEKVLDH 118

Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
            IV+FT GDDLE    +LED+L  +  + LK +L+ C  R V F+NK K   +  +QV++
Sbjct: 119 TIVLFTRGDDLEG--GSLEDYL-EDSCEALKRLLEKCGGRYVAFNNKAKGREQ-EQQVKE 174

Query: 200 LLSLVNSVIVQNGGQPYTDELK 221
           LL+ V  ++ +NGG+PYT+E+ 
Sbjct: 175 LLAKVEEMVRENGGKPYTNEMY 196

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
          T+++LG+TG GKS+T NSI G +    SA  S   +  E+  TV  DG  +N+IDTPGL 
Sbjct: 33 TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81 DLSAGS 86
          +     
Sbjct: 91 ESQDQR 96

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 22/180 (12%)

Query: 23  VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFD 81
           V++GR G GKS+  N++LG +  + S    G T+  ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSD-VPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
                 F G    +   +   G    L+V   T+R S EE+  +  L  L  + +   +I
Sbjct: 60  ------FGGLGREELARLLLRGADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PII 110

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
           +V    D LE+ E              L+E+ ++          KT +   G +++ + L
Sbjct: 111 LVGNKIDLLEEREVEEL--------LRLEELAKILGVPVFEVSAKTGE---GVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 51.9 bits (124), Expect = 8e-08
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
            +++LG++G GKSAT NSI G   F   A   G T   E++  V   G  + VIDTPGL 
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL- 176

Query: 81  DLSAGSE 87
             S+ S+
Sbjct: 177 -KSSASD 182

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 23  VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82
            + GR   GKS+  N++LG+     S    G T+    K   L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSP-IPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 83  SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142
                   +E  +          A LV+  V +  +  EE A   L    GK V    ++
Sbjct: 60  GGLGRERVEEARQVAD------RADLVLLVVDSDLTPVEEEAKLGLLRERGKPV----LL 109

Query: 143 VFTGGDDLEDHEK 155
           V    D + + E+
Sbjct: 110 VLNKIDLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
            V L+GR   GKS   N++ G K    S    G T+  +    VL  G+ + ++DTPGL 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSD-YPGTTR--DPILGVLGLGRQIILVDTPGLI 57

Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
           +  A      +   + L   ++     L+V   +   ++++E  +  L  L  K     +
Sbjct: 58  E-GASEGKGVEGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKK----PI 111

Query: 141 IVVFT 145
           I+V  
Sbjct: 112 ILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 25/136 (18%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           T++++G+ G GKS+T NSI+G +    SA  S G+      +T   + G  +N+IDTPGL
Sbjct: 40  TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT---RAGFTLNIIDTPGL 96

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFL------VVFSVTN----RFSQEEETAVHRLP 129
            +    ++            A + I  FL      V+  V      R    +   +  + 
Sbjct: 97  IEGGYIND-----------QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAIT 145

Query: 130 NLFGKNVFDYMIVVFT 145
           + FGK+++   +VV T
Sbjct: 146 DSFGKDIWRKSLVVLT 161

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTP 77
            + ++G    GKS   N++LG +        +GVT T  + T +   L  G  V ++DTP
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTAVITVLRYGLLKG--VVLVDTP 54

Query: 78  GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
           GL         + +  +           A + V S     ++ E   +  +    GK +F
Sbjct: 55  GLNSTIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF 107

Query: 138 DYMIVVFTGGDDLEDHE 154
                V    D L + E
Sbjct: 108 ----FVLNKIDLLSEEE 120

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           VVLLG +G GKS+  N         ++  +SG   T E   +V  +   + V D     D
Sbjct: 3   VVLLGDSGVGKSSLANIFTAGVYEDSAYEASG-DDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--FSQEEET 123
                +        C+ +      A+++V+SVT+R  F +  E 
Sbjct: 62  GMWLEDS-------CMQV----GDAYVIVYSVTDRSSFEKASEL 94

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 15/136 (11%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDT 76
           E  +V++G    GKS   N +LG K         G T+     T + +DG+    N++DT
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVT-TVIEEDGKTYKFNLLDT 58

Query: 77  PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV 136
            G  D  A      + +            + L VF +       EE    +   +     
Sbjct: 59  AGQEDYDAIRRLYYRAVE-----------SSLRVFDIVILVLDVEEILEKQTKEIIHHAE 107

Query: 137 FDYMIVVFTGGDDLED 152
               I++     DL D
Sbjct: 108 SGVPIILVGNKIDLRD 123

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN--VIDTPGL 79
           + +LG +G GKSA     L ++       +     + ++      DG+ V+  + DTPG 
Sbjct: 2   IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTI----DGEQVSLEIQDTPGQ 57

Query: 80  FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
                        + + L  A      F++V+S+T+R S +  + + +L
Sbjct: 58  QQNEDPES-----LERSLRWA----DGFVLVYSITDRSSFDVVSQLLQL 97

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTP 77
          + TV L+G    GK+   N++ G  A +      GVT   E K   LK  G  + ++D P
Sbjct: 3  KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVT--VEKKEGKLKYKGHEIEIVDLP 58

Query: 78 GLFDLSAGSE 87
          G + L+A SE
Sbjct: 59 GTYSLTAYSE 68

Length = 653

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	100.0
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	100.0
COG1159	298	Era GTPase [General function prediction only]	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.86
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.85
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.85
PRK00089	292	era GTPase Era; Reviewed	99.84
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.82
COG0218	200	Predicted GTPase [General function prediction only	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
PRK15494	339	era GTPase Era; Provisional	99.81
PRK12298	390	obgE GTPase CgtA; Reviewed	99.8
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.79
COG1160	444	Predicted GTPases [General function prediction onl	99.79
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.77
COG1084	346	Predicted GTPase [General function prediction only	99.77
PRK12299	335	obgE GTPase CgtA; Reviewed	99.77
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.76
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.76
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.75
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.75
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.75
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.75
PRK00093	435	GTP-binding protein Der; Reviewed	99.75
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.75
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.74
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.74
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.74
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.73
COG3596	296	Predicted GTPase [General function prediction only	99.73
COG0486	454	ThdF Predicted GTPase [General function prediction	99.73
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.72
PRK12297	424	obgE GTPase CgtA; Reviewed	99.72
PRK03003	472	GTP-binding protein Der; Reviewed	99.72
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.72
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.72
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.71
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.71
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.71
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.71
PRK12296	500	obgE GTPase CgtA; Reviewed	99.71
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.71
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.71
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.71
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.71
PRK04213	201	GTP-binding protein; Provisional	99.7
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.7
PRK03003	472	GTP-binding protein Der; Reviewed	99.7
cd00881	189	GTP_translation_factor GTP translation factor fami	99.7
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.7
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.7
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.69
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.69
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.69
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.69
PRK00093	435	GTP-binding protein Der; Reviewed	99.69
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.69
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.69
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.69
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.69
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.69
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.69
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.68
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.68
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.68
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.68
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.68
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.68
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.68
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.68
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.68
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.68
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.68
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.68
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.68
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.68
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.68
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.68
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.67
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.67
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.67
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.67
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.67
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.67
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.67
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.67
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.67
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.67
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.67
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.67
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.66
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.66
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.66
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.66
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.66
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.66
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.66
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.66
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.66
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.66
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.66
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.66
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.65
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.65
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.65
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.65
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.65
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.65
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.65
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.65
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.65
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.65
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.65
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.65
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.65
PLN00223	181	ADP-ribosylation factor; Provisional	99.64
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.64
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.64
PTZ00133	182	ADP-ribosylation factor; Provisional	99.64
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.64
PRK11058	426	GTPase HflX; Provisional	99.64
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.64
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.64
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.64
PTZ00369	189	Ras-like protein; Provisional	99.64
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.64
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.64
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.64
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.64
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.64
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.64
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.63
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.63
PLN03118	211	Rab family protein; Provisional	99.63
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.63
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.63
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.63
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.63
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.63
PLN03110	216	Rab GTPase; Provisional	99.63
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.63
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.63
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.63
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.63
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.62
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.62
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.62
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.62
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.62
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.62
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.62
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.62
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.61
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.61
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.61
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.61
PLN03108	210	Rab family protein; Provisional	99.61
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.61
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.61
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.61
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.6
COG0536	369	Obg Predicted GTPase [General function prediction	99.6
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.6
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.6
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.6
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.6
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.6
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.6
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.6
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.6
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.59
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.59
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.59
COG2262	411	HflX GTPases [General function prediction only]	99.58
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.57
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.56
CHL00071	409	tufA elongation factor Tu	99.56
CHL00189	742	infB translation initiation factor 2; Provisional	99.56
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.56
PRK12735	396	elongation factor Tu; Reviewed	99.55
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.55
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.55
PRK12736	394	elongation factor Tu; Reviewed	99.55
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.55
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.55
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.54
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.53
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.53
PRK05306	787	infB translation initiation factor IF-2; Validated	99.53
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.53
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.52
PLN03127	447	Elongation factor Tu; Provisional	99.52
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.52
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.52
PRK09866	741	hypothetical protein; Provisional	99.52
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.51
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.51
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.51
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.51
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.51
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.51
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.51
PRK12317	425	elongation factor 1-alpha; Reviewed	99.51
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.5
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.5
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.5
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.5
PRK00049	396	elongation factor Tu; Reviewed	99.5
COG1163	365	DRG Predicted GTPase [General function prediction	99.5
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.5
KOG0394	210	consensus Ras-related GTPase [General function pre	99.5
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.49
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.49
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.48
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.48
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.48
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.48
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.48
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.48
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.47
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.47
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.47
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.47
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.47
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.47
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.47
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.46
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.46
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.46
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.45
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.45
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.45
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.45
COG1100	219	GTPase SAR1 and related small G proteins [General	99.45
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.45
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.45
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.45
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.45
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.45
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.45
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.45
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.44
PLN00023	334	GTP-binding protein; Provisional	99.44
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.44
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.44
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.44
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.44
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.44
COG0488	530	Uup ATPase components of ABC transporters with dup	99.44
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.44
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.44
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.44
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.43
PRK10218	607	GTP-binding protein; Provisional	99.43
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.43
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.43
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.43
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.43
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.43
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.43
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.43
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.43
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.43
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.43
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.43
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.42
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.42
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.42
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.42
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.42
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.42
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.42
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.42
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.42
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.42
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.42
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.42
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.42
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.42
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.42
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.42
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.42
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.42
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.41
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.41
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.41
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.41
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.41
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.41
PRK04004	586	translation initiation factor IF-2; Validated	99.41
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.41
PRK05433	600	GTP-binding protein LepA; Provisional	99.41
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.41
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.41
PRK10908	222	cell division protein FtsE; Provisional	99.4
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.4
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.4
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.4
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.4
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.4
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.4
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.4
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.4
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.4
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.39
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.39
PLN03126	478	Elongation factor Tu; Provisional	99.39
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.39
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.39
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.39
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.39
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.39
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.39
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.39
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.38
COG2229	187	Predicted GTPase [General function prediction only	99.38
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.38
cd03246	173	ABCC_Protease_Secretion This family represents the	99.38
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.38
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.38
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.37
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.37
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.37
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.37
PTZ00141	446	elongation factor 1- alpha; Provisional	99.37
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.37
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.37
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.37
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.37
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.36
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.36
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.36
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.36
COG0488	530	Uup ATPase components of ABC transporters with dup	99.36
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.36
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.36
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.36
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.36
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.35
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.35
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.35
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.35
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.35
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.35
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.35
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.35
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.34
KOG0395	196	consensus Ras-related GTPase [General function pre	99.34
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.34
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.34
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.34
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.34
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.34
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.34
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.34
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.34
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.34
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.33
PRK00007	693	elongation factor G; Reviewed	99.33
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.33
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.33
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.33
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.33
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.33
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.33
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.33
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.32
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.32
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.32
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.32
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.32
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.32
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.32
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.32
PRK12739	691	elongation factor G; Reviewed	99.32
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.32
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.31
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.31
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.31
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.31
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.31
KOG1145	683	consensus Mitochondrial translation initiation fac	99.31
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.31
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.31
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.31
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.31
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.31
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.31
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.3
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.3
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.3
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.3
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.3
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.3
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.3
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.3
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.3
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.3
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.29
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.29
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.29
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.29
COG4988	559	CydD ABC-type transport system involved in cytochr	99.29
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.29
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.29
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.29
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.29
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.28
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.28
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.28
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.28
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.28
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.28
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.28
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.28
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.28
PRK09602	396	translation-associated GTPase; Reviewed	99.28
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.28
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.28
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.28
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.28
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.28
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.28
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.27
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.27
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.27
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.27
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.27
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.27
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.27
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.27
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.27
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.26
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.26
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.26
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.26
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.26
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.26
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.26
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.25
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.25
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.25
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK13351	687	elongation factor G; Reviewed	99.25
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.25
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.25
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.25
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.24
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.24
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.24
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.24
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.24
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.24
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.24
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.23
PRK11147	635	ABC transporter ATPase component; Reviewed	99.23
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.23
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.23
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.23
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.23
PLN00043	447	elongation factor 1-alpha; Provisional	99.23
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.23
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.23
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.22
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.22
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.22
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.22
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.22
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.22
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.22
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.22
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.22
PLN03073	718	ABC transporter F family; Provisional	99.22
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.22
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.22
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.22
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.21
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.21
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.21
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.21
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.21
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.21
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.21
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.2
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.2
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.2
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.2
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.2
PRK10938	490	putative molybdenum transport ATP-binding protein	99.2
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.2

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=100.00  E-value=1.2e-32  Score=210.88  Aligned_cols=203  Identities=41%  Similarity=0.728  Sum_probs=165.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+|+|++|+||||++|+|+|...+.++....++|..+..... ...+..+.++||||+.+.....++..+++.+++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            48999999999999999999999988777666677777666554 47888999999999999887777777888888887


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ..+++|++++|++++ +++..++..++.+...|+...+++++|++|+.|....  ..+.++++...+..++++++.|..+
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence            788999999999998 9999999999999999999989999999999998887  7788988864456799999999999


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhcc
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSLL  226 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  226 (228)
                      ++.|+...........++.+|++.|++++.++++.+|.+++|++.+.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~  203 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEE  203 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence            99999984333445688999999999999999999999999998764

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=100.00  E-value=3.1e-31  Score=201.15  Aligned_cols=196  Identities=51%  Similarity=0.847  Sum_probs=166.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      ++|+|+|++|+|||||+|+|+|...+.++....+.|..+...... ..+..+.++||||+.+.....+...+++.+++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            479999999999999999999998765554444566655544433 4677899999999998876555666677777766


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ..+++|++++++++. +++..+...++.+...++...++++++++|+.|....  ..+++++.. ....++.+++.|..+
T Consensus        80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r  155 (196)
T cd01852          80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR  155 (196)
T ss_pred             cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence            678999999999998 4999999999999999998777899999999999887  789998887 347899999999999


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhh
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELK  221 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~  221 (228)
                      ++.|++... ++..+.++.+|++.|+++++++++++|.+++|
T Consensus       156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~  196 (196)
T cd01852         156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY  196 (196)
T ss_pred             EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            999999887 77889999999999999999999999999875

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG1159 Era GTPase [General function prediction only]

Probab=99.92  E-value=4.6e-24  Score=165.10  Aligned_cols=176  Identities=23%  Similarity=0.334  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      ..|+|+|++++|||||+|+|.|.+.  +..+..+.||.....+....+...+.++||||++....   .+.+.+.+....
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~---~l~~~m~~~a~~   81 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH---ALGELMNKAARS   81 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch---HHHHHHHHHHHH
Confidence            5899999999999999999999988  67778899999888888777788899999999998643   333445555566


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhh-HHHHhhccCCchHHHHHHhcCC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      +...+|+++|++++...+..++...++.+..  . +  .|+++++||+|....  .. +...+..     .....     
T Consensus        82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~-~--~pvil~iNKID~~~~--~~~l~~~~~~-----~~~~~-----  144 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPGDEFILEQLKK--T-K--TPVILVVNKIDKVKP--KTVLLKLIAF-----LKKLL-----  144 (298)
T ss_pred             HhccCcEEEEEEeccccCCccHHHHHHHHhh--c-C--CCeEEEEEccccCCc--HHHHHHHHHH-----HHhhC-----
Confidence            7789999999999997799999888887776  1 1  279999999999877  55 3333332     22211     


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhhh
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKV  222 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~  222 (228)
                         .|...++.||.++.+++.|++.+...+++  +++|+++.+.
T Consensus       145 ---~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe--g~~~yp~d~i  183 (298)
T COG1159         145 ---PFKEIVPISALKGDNVDTLLEIIKEYLPE--GPWYYPEDQI  183 (298)
T ss_pred             ---CcceEEEeeccccCCHHHHHHHHHHhCCC--CCCcCChhhc
Confidence               23366778999999999999999999998  5567766554

>TIGR00436 era GTP-binding protein Era

Probab=99.86  E-value=9.9e-21  Score=150.32  Aligned_cols=165  Identities=19%  Similarity=0.233  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+|+|++|||||||+|+|+|...  +.++..+.|+...........+..+.++||||+.....   ...+.+.+.....
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~---~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH---SLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc---hHHHHHHHHHHHH
Confidence            689999999999999999999875  33344455655544444434556689999999876522   1222233333344


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
                      ...+|++++++|++...+.. ...+..+...   .  +|+++|+||+|....  ..+...+..        +.....   
T Consensus        77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~---~--~p~ilV~NK~Dl~~~--~~~~~~~~~--------~~~~~~---  137 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL---K--RPVVLTRNKLDNKFK--DKLLPLIDK--------YAILED---  137 (270)
T ss_pred             HhhCCEEEEEEECCCCCchH-HHHHHHHHhc---C--CCEEEEEECeeCCCH--HHHHHHHHH--------HHhhcC---
Confidence            56889999999998555543 3334444321   1  379999999998754  444433322        222111   


Q ss_pred             EEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                        +...++.||.++.++++|++.+.+.+++.
T Consensus       138 --~~~v~~iSA~~g~gi~~L~~~l~~~l~~~  166 (270)
T TIGR00436       138 --FKDIVPISALTGDNTSFLAAFIEVHLPEG  166 (270)
T ss_pred             --CCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence              12346678889999999999999998774

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.85  E-value=8.8e-20  Score=144.23  Aligned_cols=200  Identities=23%  Similarity=0.304  Sum_probs=130.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      ....+..+|+|+|.+|+||||++|+|+|.......... +.+....... ....+..+.++||||+.+.....+...+.+
T Consensus        33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~-~~~~G~~l~VIDTPGL~d~~~~~e~~~~~i  110 (313)
T TIGR00991        33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVS-RTRAGFTLNIIDTPGLIEGGYINDQAVNII  110 (313)
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEE-EEECCeEEEEEECCCCCchHHHHHHHHHHH
Confidence            33455689999999999999999999998763322211 1122211111 224677899999999998643333221112


Q ss_pred             HHHHhhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ..++  ...++|++++|.+++ .+++..+.+.++.+...|+...++++++++||.|...+++..+++++.+ ++|.++.+
T Consensus       111 k~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~  187 (313)
T TIGR00991       111 KRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRV  187 (313)
T ss_pred             HHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHH
Confidence            2221  224799999998765 4788889999999999999888889999999999775444789999986 78888877


Q ss_pred             HHhcCC-----------eEEEeeC--CCccccc------c-hHHHHHHHHHHHHHHHhcCCCCCCh
Q 027090          173 LQLCDN-----------RCVLFDN--KTKDEAK------G-TEQVRQLLSLVNSVIVQNGGQPYTD  218 (228)
Q Consensus       173 ~~~~~~-----------~~~~~~~--~~~~~~~------~-~~~~~~l~~~i~~~~~~~~~~~~~~  218 (228)
                      ++.+.+           .+.+..+  .+.....      . ..=++.|++.|.+++.....+-.++
T Consensus       188 i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~~~~~  253 (313)
T TIGR00991       188 IHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKPIHVD  253 (313)
T ss_pred             HHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCCeEec
Confidence            775432           2222222  1111110      0 1235778888888877655543333

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.85  E-value=6.2e-21  Score=137.43  Aligned_cols=155  Identities=21%  Similarity=0.227  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH-HHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-~~~~~   98 (228)
                      ++|+++|.+++|||||+|+|+|....   ..+.+.++...........+..+.++|+||+++......+  +.+ ..++.
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~---v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l~   75 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQK---VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE--ERVARDYLL   75 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEE---EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH--HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCce---ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH--HHHHHHHHh
Confidence            47999999999999999999999843   2233333333333333356788999999999886544322  222 22322


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                        .+.+|+++.++|++ .+.    +-+.++..+....  +|+++++||+|...+  ..+.-        +.+.+.+...-
T Consensus        76 --~~~~D~ii~VvDa~-~l~----r~l~l~~ql~e~g--~P~vvvlN~~D~a~~--~g~~i--------d~~~Ls~~Lg~  136 (156)
T PF02421_consen   76 --SEKPDLIIVVVDAT-NLE----RNLYLTLQLLELG--IPVVVVLNKMDEAER--KGIEI--------DAEKLSERLGV  136 (156)
T ss_dssp             --HTSSSEEEEEEEGG-GHH----HHHHHHHHHHHTT--SSEEEEEETHHHHHH--TTEEE---------HHHHHHHHTS
T ss_pred             --hcCCCEEEEECCCC-CHH----HHHHHHHHHHHcC--CCEEEEEeCHHHHHH--cCCEE--------CHHHHHHHhCC
Confidence              35789999999998 332    2233333333223  389999999998765  32221        12223333232


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLV  204 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i  204 (228)
                            +.++.+|.++.++++|+++|
T Consensus       137 ------pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  137 ------PVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             -------EEEEBTTTTBTHHHHHHHH
T ss_pred             ------CEEEEEeCCCcCHHHHHhhC
Confidence                  23445666789999998875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.84  E-value=9.2e-20  Score=146.53  Aligned_cols=169  Identities=20%  Similarity=0.304  Sum_probs=112.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ...|+|+|++|||||||+|+|+|...  ........|+...........+..+.++||||+.+...   ...+.+.....
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~---~l~~~~~~~~~   79 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR---ALNRAMNKAAW   79 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh---HHHHHHHHHHH
Confidence            35799999999999999999999875  22334445555444433333456799999999876542   22233333334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC-ccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      .....+|++++++++...++..+...++.+...   .  .|+++++||+|.. ..  ..+...++.        +.+...
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~---~--~pvilVlNKiDl~~~~--~~l~~~~~~--------l~~~~~  144 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV---K--TPVILVLNKIDLVKDK--EELLPLLEE--------LSELMD  144 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc---C--CCEEEEEECCcCCCCH--HHHHHHHHH--------HHhhCC
Confidence            445688999999999866777666665555421   2  3799999999997 33  444444433        222111


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                           +...++.|+.++.++++|++.+.+.++++.
T Consensus       145 -----~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        145 -----FAEIVPISALKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             -----CCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence                 123345677788999999999999988743

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.82  E-value=1.3e-18  Score=148.22  Aligned_cols=163  Identities=21%  Similarity=0.269  Sum_probs=120.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...+|+|+|++|+|||||+|+|+|...+..... ...|+...... ....+..+.+|||||+.+...... ..+++.+.+
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~-~~~TTr~~ei~-~~idG~~L~VIDTPGL~dt~~dq~-~neeILk~I  193 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAF-GMGTTSVQEIE-GLVQGVKIRVIDTPGLKSSASDQS-KNEKILSSV  193 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCC-CCCceEEEEEE-EEECCceEEEEECCCCCccccchH-HHHHHHHHH
Confidence            346899999999999999999999976554432 23454442222 224677899999999998754322 223444443


Q ss_pred             hh--ccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccc-----hhhHHHHhhccCCchH
Q 027090           98 GM--AKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-----EKTLEDFLGHECPKPL  169 (228)
Q Consensus        98 ~~--~~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~-----~~~~~~~~~~~~~~~~  169 (228)
                      ..  ...++|++|+|++++. +...++...++.+...|+...++++|||+|+.|...++     +..++.++.+ ++|.+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~L  272 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIV  272 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHH
Confidence            22  2236899999998862 23346778999999999999999999999999988642     1579999986 88999


Q ss_pred             HHHHHhcCCeEEEee
Q 027090          170 KEILQLCDNRCVLFD  184 (228)
Q Consensus       170 ~~~~~~~~~~~~~~~  184 (228)
                      +++++.|.+...+++
T Consensus       273 q~~Irq~~g~~~l~n  287 (763)
T TIGR00993       273 QQAIGQAVGDLRLMN  287 (763)
T ss_pred             HHHHHHhcCcceecc
Confidence            999999999766665

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=2.8e-18  Score=126.38  Aligned_cols=174  Identities=16%  Similarity=0.222  Sum_probs=113.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      |.....-|+++|++++|||||||+|+|+.....-....+.|...+.+...    ..+.++|.||++-...+.+. .+.|.
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~-~e~w~   94 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEV-KEKWK   94 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHH-HHHHH
Confidence            34455689999999999999999999976322212223445545544322    22789999999988776532 24444


Q ss_pred             HHHhh---ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           95 KCLGM---AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        95 ~~~~~---~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ..+..   ....+.++++++|+...+...++++++++...   ..  |+++++||+|....  .+..+.+..     +.+
T Consensus        95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~---~i--~~~vv~tK~DKi~~--~~~~k~l~~-----v~~  162 (200)
T COG0218          95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL---GI--PVIVVLTKADKLKK--SERNKQLNK-----VAE  162 (200)
T ss_pred             HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc---CC--CeEEEEEccccCCh--hHHHHHHHH-----HHH
Confidence            44332   22348889999999988888899999888765   22  79999999999986  555443443     222


Q ss_pred             HH-HhcCCe-EEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          172 IL-QLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       172 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+ ...... ++.     ..+..++.++++|...|.+.+.+
T Consensus       163 ~l~~~~~~~~~~~-----~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         163 ELKKPPPDDQWVV-----LFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HhcCCCCccceEE-----EEecccccCHHHHHHHHHHHhhc
Confidence            11 111111 122     22334557799999988877654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=5.1e-19  Score=144.40  Aligned_cols=162  Identities=22%  Similarity=0.199  Sum_probs=121.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      ..|+|+|++++|||||+|.|+|...  +-+...+.+|..+.+....+.+..+.++||+|+.+..  ++.+.+.+......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD--EDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence            4899999999999999999999865  5555666666666666666888889999999998643  23344555555555


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      +...+|++||++|...+++..+....++++.     ..+|+++|.||+|....  +...           .++-..    
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-----~~kpviLvvNK~D~~~~--e~~~-----------~efysl----  137 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRR-----SKKPVILVVNKIDNLKA--EELA-----------YEFYSL----  137 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEEcccCchh--hhhH-----------HHHHhc----
Confidence            6678899999999998999999998777762     12389999999998743  2221           111111    


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                        .+...++.||..+.++.+|++.+...++
T Consensus       138 --G~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         138 --GFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             --CCCCceEeehhhccCHHHHHHHHHhhcC
Confidence              2344567788899999999999998874

>PRK15494 era GTPase Era; Provisional

Probab=99.81  E-value=9.4e-19  Score=142.84  Aligned_cols=172  Identities=20%  Similarity=0.220  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+++|++|||||||+|.|+|...  +.+.....|+..........++..+.++||||+.+....   ..+.+.+....
T Consensus        53 ~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~---l~~~~~r~~~~  127 (339)
T PRK15494         53 VSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS---LEKAMVRCAWS  127 (339)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc---HHHHHHHHHHH
Confidence            4999999999999999999999865  222333444433333333355667899999998653221   11223332223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+|+++++++....+...+..+++.+... +    .|.++++||+|+...   .+....+         ....... 
T Consensus       128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~~~~~---------~l~~~~~-  189 (339)
T PRK15494        128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLNDIKA---------FLTENHP-  189 (339)
T ss_pred             HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHHHHHH---------HHHhcCC-
Confidence            35678999999998766777666666655432 2    257789999998532   2222111         1111110 


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChh
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE  219 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  219 (228)
                         +...++.||.++.++++|++.|.+.+++  +++|+++
T Consensus       190 ---~~~i~~iSAktg~gv~eL~~~L~~~l~~--~~~~~~~  224 (339)
T PRK15494        190 ---DSLLFPISALSGKNIDGLLEYITSKAKI--SPWLYAE  224 (339)
T ss_pred             ---CcEEEEEeccCccCHHHHHHHHHHhCCC--CCCCCCC
Confidence               1123466888889999999999998887  3445443

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.80  E-value=2.4e-18  Score=142.27  Aligned_cols=170  Identities=19%  Similarity=0.145  Sum_probs=109.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      -|+|+|.+|||||||+|+|++...   .++.++.||........... ...+.++||||+.........+...+.+.   
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~---  234 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH---  234 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH---
Confidence            699999999999999999998764   35556777766666554444 35699999999987544333333334333   


Q ss_pred             ccCCccEEEEEEeCC---CCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090          100 AKDGIHAFLVVFSVT---NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus       100 ~~~~~~~il~v~~~~---~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                       ..+++++++++|+.   ..-...+ ..+++.+......-..+|.++|+||+|+...  .++...++.        +.+.
T Consensus       235 -i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~--------l~~~  303 (390)
T PRK12298        235 -LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKA--------IVEA  303 (390)
T ss_pred             -HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHH--------HHHH
Confidence             34679999999986   1112222 3344444432111112489999999998765  555444433        2222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ....    ...+..||.++.++++|++.|.+.+++.
T Consensus       304 ~~~~----~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        304 LGWE----GPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             hCCC----CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            1110    0234567778899999999999999874

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.79  E-value=5.3e-18  Score=132.28  Aligned_cols=134  Identities=28%  Similarity=0.331  Sum_probs=94.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .....+|+|+|++|+|||||+|+|+|......+.. .+.|....... ....+..+.++||||+.+..... ...+.+..
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~-~~~T~~~~~~~-~~~~g~~i~vIDTPGl~~~~~~~-~~~~~~~~  104 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAF-QSETLRVREVS-GTVDGFKLNIIDTPGLLESVMDQ-RVNRKILS  104 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCceEEEEEEE-EEECCeEEEEEECCCcCcchhhH-HHHHHHHH
Confidence            44558999999999999999999999876433321 23343333332 23567789999999998764211 11122222


Q ss_pred             HHhh--ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           96 CLGM--AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        96 ~~~~--~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .+..  ....+|+++++.+++ .+++..+.+.++.+...++...++++++|+||+|...+
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            2221  123689999998776 47788888999999998998877899999999998755

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=2.1e-18  Score=140.86  Aligned_cols=178  Identities=20%  Similarity=0.240  Sum_probs=126.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...+++|+|++++|||||+|+|+|+..  +-++..+.|+.........++++.+.++||.|+--.....+.. +.++-..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR--~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~-E~~Sv~r  253 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEER--VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESV-EKYSVAR  253 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCce--EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccce-EEEeehh
Confidence            458999999999999999999999976  4455666677766665555789999999999987655443321 1111111


Q ss_pred             -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 -GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 -~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                       ..+...++++++++|+..+++..+.+...++... ++    ++++++||||+...+...++++...     ++....  
T Consensus       254 t~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~--  321 (444)
T COG1160         254 TLKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLP--  321 (444)
T ss_pred             hHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhc--
Confidence             1234577999999999999999999988888764 33    5999999999876421333333333     333332  


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                         ++-+...+..||.++.++.+|++.+.++..+...
T Consensus       322 ---~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~  355 (444)
T COG1160         322 ---FLDFAPIVFISALTGQGLDKLFEAIKEIYECATR  355 (444)
T ss_pred             ---cccCCeEEEEEecCCCChHHHHHHHHHHHHHhcc
Confidence               2334455667888889999999999888877544

>cd01898 Obg Obg subfamily

Probab=99.77  E-value=1.3e-17  Score=123.33  Aligned_cols=164  Identities=20%  Similarity=0.177  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeeEeEeeeeeCCc-EEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~-~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+|+|++|||||||+|+|++....   +...+. |......... ..+. .+.++||||+.+...........+.+.+ 
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~---v~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-   76 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK---IADYPFTTLVPNLGVVR-VDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI-   76 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc---ccCCCccccCCcceEEE-cCCCCeEEEEecCcccCcccccCCchHHHHHHH-
Confidence            5899999999999999999986531   111122 2222222222 3343 7899999998654322212222222222 


Q ss_pred             hccCCccEEEEEEeCCCC-CCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           99 MAKDGIHAFLVVFSVTNR-FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~-~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                         ..+|++++++|++.. -+.... .+++.+.........+|+++++||+|+...  ....+.+..        .....
T Consensus        77 ---~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~--------~~~~~  143 (170)
T cd01898          77 ---ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKE--------LLKEL  143 (170)
T ss_pred             ---HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHH--------HHhhC
Confidence               356999999999854 343332 344444443211123489999999998765  444433332        22221


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ...     ..+..++.++.+++++++.+.+.
T Consensus       144 ~~~-----~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         144 WGK-----PVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CCC-----CEEEEecCCCCCHHHHHHHHHhh
Confidence            111     12345667778999999887654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=4.6e-17  Score=127.57  Aligned_cols=138  Identities=21%  Similarity=0.225  Sum_probs=102.5

Q ss_pred             ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      +.++-.+....|+|.|.+++|||||+++|++.+.   .+.+++.||..-..+........+++|||||+.|....+.+..
T Consensus       160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp---EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I  236 (346)
T COG1084         160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP---EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEI  236 (346)
T ss_pred             cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC---ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence            4566677778999999999999999999999875   4677888888777766667778899999999999775444322


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCC--CCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHH
Q 027090           91 KEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (228)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~--~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~  159 (228)
                      +  ..++.....-.++++|++|.+  .+++-+++ ..++.+...+. .   |+++|+||+|....  +.+++
T Consensus       237 E--~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~---p~v~V~nK~D~~~~--e~~~~  300 (346)
T COG1084         237 E--RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-A---PIVVVINKIDIADE--EKLEE  300 (346)
T ss_pred             H--HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-C---CeEEEEecccccch--hHHHH
Confidence            2  122222223458999999998  45666655 46677777766 2   79999999998866  55544

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.77  E-value=6.4e-17  Score=131.36  Aligned_cols=168  Identities=17%  Similarity=0.117  Sum_probs=107.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .|+|+|.++||||||+|+|++...   .+..++.|+.......... +...+.++|+||+.+.......+...+.+.+  
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~---~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--  234 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--  234 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCC---ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence            589999999999999999998653   2344555655555544434 4567999999999875544333444444444  


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHH-HhhccCCchHHHHHHhcC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGHECPKPLKEILQLCD  177 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  177 (228)
                        ++.+++++|+|+++.-+..+.+ +.+.+......-..+|+++|+||+|+...  ..+.. .++.        ..+...
T Consensus       235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~~~~--------~~~~~~  302 (335)
T PRK12299        235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKRAAL--------ELAALG  302 (335)
T ss_pred             --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHHHHH--------HHHhcC
Confidence              3569999999998544555543 44444433111123489999999998754  33321 1111        111111


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                            ...+..||.++.++++|++.|.+.+.+.
T Consensus       303 ------~~i~~iSAktg~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        303 ------GPVFLISAVTGEGLDELLRALWELLEEA  330 (335)
T ss_pred             ------CCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence                  1224567778899999999999888763

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.76  E-value=5.4e-17  Score=119.89  Aligned_cols=163  Identities=20%  Similarity=0.163  Sum_probs=95.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|.+|+|||||+|+|++.....   ...+.++..............+.++||||+.+..........  ...+...
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~~~   76 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEV---APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIE--MQAITAL   76 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCcc---CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHH--HHHHHHH
Confidence            79999999999999999999876421   112232222222222234567999999998643221111000  0111111


Q ss_pred             cCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090          101 KDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s---~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ....|++++++|++...+   .....++..+...+.   ..|+++++||+|....  ..+.. .+.        ..+.- 
T Consensus        77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~~~--------~~~~~-  141 (168)
T cd01897          77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-IEE--------EEELE-  141 (168)
T ss_pred             HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-HHH--------hhhhc-
Confidence            123588999999974433   222345555544332   2389999999999765  44433 111        11110 


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                       .    ...+..||.++.+++++++.+.+.+
T Consensus       142 -~----~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         142 -G----EEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             -c----CceEEEEecccCCHHHHHHHHHHHh
Confidence             0    1234568888999999999887764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04163 Era Era subfamily

Probab=99.76  E-value=3.9e-17  Score=119.92  Aligned_cols=163  Identities=23%  Similarity=0.263  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+++|++|+|||||+|.|+|......  .....++..............+.++||||+.+......   ..+......
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~---~~~~~~~~~   78 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG---ERMVKAAWS   78 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCceEec--cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH---HHHHHHHHH
Confidence            6899999999999999999999864221  11222332222222223446789999999876533221   112222233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc-cchhhHHHHhhccCCchHHHHHHhcCC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE-DHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      ....+|.++++++.....+......++.+...   .  .|+++++||+|... .  ..+...+..     +..   ... 
T Consensus        79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~~--~~~~~~~~~-----~~~---~~~-  142 (168)
T cd04163          79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS---K--TPVILVLNKIDLVKDK--EDLLPLLEK-----LKE---LGP-  142 (168)
T ss_pred             HHHhCCEEEEEEECCCccCchHHHHHHHHHHh---C--CCEEEEEEchhccccH--HHHHHHHHH-----HHh---ccC-
Confidence            44678999999999855555555555544332   1  27999999999873 3  444443333     211   111 


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                          ....+..++.++.+++++++.|.+.
T Consensus       143 ----~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         143 ----FAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             ----CCceEEEEeccCCChHHHHHHHHhh
Confidence                1122344566678899999888654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.75  E-value=5.2e-17  Score=118.33  Aligned_cols=156  Identities=23%  Similarity=0.235  Sum_probs=97.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +.+|+++|++|+|||||+|+|++......+. ....+....... .......+.++||||+.+......   .+......
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~   75 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEES-IDIGGIPVRLIDTAGIRETEDEIE---KIGIERAR   75 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEE-EEeCCEEEEEEECCCcCCCcchHH---HHHHHHHH
Confidence            4589999999999999999999876321111 112222222222 224566789999999877543211   11122222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      .....+|++++++++....+....+.+..    ..   .+|+++++||+|....  ...              .......
T Consensus        76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~---~~~vi~v~nK~D~~~~--~~~--------------~~~~~~~  132 (157)
T cd04164          76 EAIEEADLVLFVIDASRGLDEEDLEILEL----PA---DKPIIVVLNKSDLLPD--SEL--------------LSLLAGK  132 (157)
T ss_pred             HHHhhCCEEEEEEECCCCCCHHHHHHHHh----hc---CCCEEEEEEchhcCCc--ccc--------------ccccCCC
Confidence            33457899999999997677766654433    11   2379999999998765  322              0111111


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                            ..+..++.++.+++++++.|.+.+
T Consensus       133 ------~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         133 ------PIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             ------ceEEEECCCCCCHHHHHHHHHHhh
Confidence                  223456667789999999887754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.75  E-value=3.5e-17  Score=113.70  Aligned_cols=116  Identities=24%  Similarity=0.326  Sum_probs=73.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+|+|.+|+|||||+|+|++......+.. ...|... ...........+.++||||+.+........ +.+..+....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence            689999999999999999998653222221 2333333 333333567778899999988754322211 2222333333


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~  146 (228)
                       ..+|++++++++...........++.+.   . .  +|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~-~--~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK---N-K--KPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH---T-T--SEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh---c-C--CCEEEEEcC
Confidence             6789999999987533334444445442   1 2  389999997

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04171 SelB SelB subfamily

Probab=99.75  E-value=8.1e-17  Score=118.28  Aligned_cols=161  Identities=19%  Similarity=0.204  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      +|+++|++|+|||||+|+|++..... ........|............+..+.++||||..           ++...+..
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~-----------~~~~~~~~   70 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-----------KFIKNMLA   70 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH-----------HHHHHHHh
Confidence            68999999999999999999753210 0011122333333322221125679999999932           22222333


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+|++++|+|++..........+..+.. .+.   +|+++++||+|....  .......+.     +.+..+.... 
T Consensus        71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~-  138 (164)
T cd04171          71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL-  138 (164)
T ss_pred             hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc-
Confidence            4557899999999975444444444443322 222   379999999998754  333322222     2222222100 


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                        .....++.|+.++.+++++++.+..
T Consensus       139 --~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         139 --ADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             --CCCcEEEEeCCCCcCHHHHHHHHhh
Confidence              0012345577788999999987754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.75  E-value=8.5e-17  Score=130.51  Aligned_cols=166  Identities=18%  Similarity=0.182  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC-cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      -.|+|+|.++||||||+|+|++...   .+..++.|+............ ..+.++||||+.+.......+...+.+.+ 
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~---~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-  233 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-  233 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCc---cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH-
Confidence            3689999999999999999998753   133444454444333333344 67999999999765443333334444443 


Q ss_pred             hccCCccEEEEEEeCCCC---CCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           99 MAKDGIHAFLVVFSVTNR---FSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~---~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                         .+.+++++|+|++..   -+..+.. +.+.+......-..+|+++|+||+|+...  ..+....+.        +.+
T Consensus       234 ---erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~--------l~~  300 (329)
T TIGR02729       234 ---ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKE--------LKK  300 (329)
T ss_pred             ---HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHH--------HHH
Confidence               356999999999743   2223322 33333332111123489999999998765  444333332        222


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ....      ..+..||.++.++++|++.|.+.+
T Consensus       301 ~~~~------~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       301 ALGK------PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HcCC------cEEEEEccCCcCHHHHHHHHHHHh
Confidence            2221      224457778899999999987765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=1.5e-16  Score=134.80  Aligned_cols=173  Identities=21%  Similarity=0.242  Sum_probs=110.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH-H
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-C   96 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~-~   96 (228)
                      ...+|+|+|++|+|||||+|+|++.....  ......++...........+..+.++||||+.......... +.+.. .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~--~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~-e~~~~~~  248 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVI--VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGV-EKYSVIR  248 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcee--ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHH-HHHHHHH
Confidence            45899999999999999999999876422  22223344333322223466779999999987654433222 22111 1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......+|++++|+|+..+.+..+.+.+..+... +    +|+++++||+|....  .......+.     +.......
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~  316 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFL  316 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCH--HHHHHHHHH-----HHHhcccc
Confidence            11234577999999999988888888776665442 1    379999999998754  433333332     22221111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                           .+...+..||.++.++.++++.+.+....
T Consensus       317 -----~~~~i~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        317 -----DYAPIVFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             -----cCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                 12234556788889999999988776654

>cd01894 EngA1 EngA1 subfamily

Probab=99.75  E-value=4.8e-17  Score=118.58  Aligned_cols=156  Identities=18%  Similarity=0.181  Sum_probs=96.0

Q ss_pred             EEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccC
Q 027090           23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD  102 (228)
Q Consensus        23 ~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~  102 (228)
                      +++|.+|+|||||+|.|++.......  ....++...........+..+.++||||+.+...   ...+.+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVE--DTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeec--CCCCceeCceeEEEEECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            58999999999999999987532111  2222332222222234566789999999876532   122233333333445


Q ss_pred             CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEE
Q 027090          103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL  182 (228)
Q Consensus       103 ~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
                      .+|+++++++.....+..+....+.+... +    .|+++++||+|....  ......           +... ..    
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~~~~-----------~~~~-~~----  132 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDEAAE-----------FYSL-GF----  132 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHHHHH-----------HHhc-CC----
Confidence            77999999999866666666555555432 1    379999999998765  333111           1111 10    


Q ss_pred             eeCCCcccccchHHHHHHHHHHHHH
Q 027090          183 FDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       183 ~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                       ...+..++.++.+++++++.+.+.
T Consensus       133 -~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         133 -GEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             -CCeEEEecccCCCHHHHHHHHHhh
Confidence             012345666778999999988754

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.74  E-value=6.2e-16  Score=117.12  Aligned_cols=170  Identities=14%  Similarity=0.243  Sum_probs=100.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...+|+|+|.+|+|||||+|+|++...........+.|.......    ....+.++||||+......... .+++...+
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~-~~~~~~~~   97 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEE-KEKWQKLI   97 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchH-HHHHHHHH
Confidence            457899999999999999999998652111111112232222221    1357899999998754332221 12222222


Q ss_pred             h---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           98 G---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        98 ~---~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .   .....++.++++++...+.+..+.+.++.+.. .  .  .|+++++||+|....  .+.......     +.+...
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~--~--~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l~  165 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-Y--G--IPVLIVLTKADKLKK--GERKKQLKK-----VRKALK  165 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-c--C--CcEEEEEECcccCCH--HHHHHHHHH-----HHHHHH
Confidence            1   22345678888888876666665554444432 1  1  268999999998765  444433332     323332


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ....      ..++.++.++.+++++++.|.+++.+
T Consensus       166 ~~~~------~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        166 FGDD------EVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             hcCC------ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            2111      22245777788999999999888765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.74  E-value=2.1e-16  Score=133.59  Aligned_cols=174  Identities=22%  Similarity=0.263  Sum_probs=110.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC-   96 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~-   96 (228)
                      ...+++++|.+|+|||||+|+|++.....  ......|+..........++..+.++||||+.......+.. +.+... 
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~--~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~-e~~~~~~  247 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVI--VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGV-EKYSVLR  247 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeee--cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhH-HHHHHHH
Confidence            34689999999999999999999876421  22223333333222222456679999999987655433222 111111 


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......+|++++|+|+..+.+..+.+.+..+...   .  +|+++++||+|+... ......+.+.     +.......
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~  316 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEA---G--KALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFL  316 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccC
Confidence            11234678999999999988888887766655432   2  379999999998722 0334343333     22222111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .     +...+..||.++.+++++++.+.+....
T Consensus       317 ~-----~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       317 D-----FAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             C-----CCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            1     1233456888889999999998887765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.74  E-value=2.2e-16  Score=116.81  Aligned_cols=171  Identities=19%  Similarity=0.223  Sum_probs=98.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~   97 (228)
                      ..+|+++|.+|+|||||+|+|++........  ...++...........+..+.++||||+.+........ +.+. ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~-e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD--IAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGI-EKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccC--CCCCccCceeeEEEECCeeEEEEECCCCccccchhccH-HHHHHHHH
Confidence            3689999999999999999999875321111  12222111111122355668899999987653222211 1111 111


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ......+|++++++++....+......+..+...   .  +|+++++||+|.............+.     +.+..... 
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~-  147 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEE---G--KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFL-  147 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc---C--CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccc-
Confidence            1234577999999999877776665554444321   2  37999999999875410112221221     11111111 


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                          .....+..++.++.++.++++.+.+.
T Consensus       148 ----~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         148 ----DYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ----cCCceEEEeccCCCCHHHHHHHHHHh
Confidence                11233455777889999999887654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01878 HflX HflX subfamily

Probab=99.73  E-value=1.7e-16  Score=121.10  Aligned_cols=163  Identities=24%  Similarity=0.211  Sum_probs=96.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +..+|+|+|++|||||||+|.|++.......  ....|...............+.++||||+.+....  ...+.+...+
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~  115 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTL  115 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCCH--HHHHHHHHHH
Confidence            3469999999999999999999997642111  11222222222222223347999999998653221  1112222222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                       .....+|++++++|++...+..... +.+.+.......  +|+++|+||+|....  ....    .        ....-
T Consensus       116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~----~--------~~~~~  178 (204)
T cd01878         116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE----E--------RLEAG  178 (204)
T ss_pred             -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH----H--------HhhcC
Confidence             2245789999999998655555443 334444332222  389999999998765  3332    0        01100


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                            ....+..|+.++.+++++++.|.+.
T Consensus       179 ------~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         179 ------RPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             ------CCceEEEEcCCCCCHHHHHHHHHhh
Confidence                  1123345777788999999888664

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=2.6e-17  Score=126.11  Aligned_cols=182  Identities=18%  Similarity=0.194  Sum_probs=109.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ..-+++|+|.+|+|||||||+|++.+.  ..+..-+.+++........+....+.++||||+++....+.+    ....+
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~--~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~----~r~~~  111 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEV--KEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE----HRQLY  111 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccC--ceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHH----HHHHH
Confidence            446888999999999999999996543  112222333333222223355677999999999998765543    33444


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccc----------hhhHHHHhhccCCc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH----------EKTLEDFLGHECPK  167 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~----------~~~~~~~~~~~~~~  167 (228)
                      ....++.|.+++++++.++.=.-+...+.-+.....+   +++++++|.+|...+.          ...++.+++. +..
T Consensus       112 ~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~~  187 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KAE  187 (296)
T ss_pred             HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HHH
Confidence            4444577999999999855433334433433333333   3799999999977551          0112222221 112


Q ss_pred             hHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCC
Q 027090          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPY  216 (228)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~  216 (228)
                      .+.+..+...++       +..+....+++++|..++..+++.+...+.
T Consensus       188 ~~~~~~q~V~pV-------~~~~~r~~wgl~~l~~ali~~lp~e~rs~~  229 (296)
T COG3596         188 ALGRLFQEVKPV-------VAVSGRLPWGLKELVRALITALPVEARSPL  229 (296)
T ss_pred             HHHHHHhhcCCe-------EEeccccCccHHHHHHHHHHhCcccccchh
Confidence            222333322222       222345569999999999999987655443

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.73  E-value=1.6e-16  Score=130.32  Aligned_cols=167  Identities=23%  Similarity=0.263  Sum_probs=115.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      ..-..+.+++|+|++++|||||+|+|++.+.  ..++..+.||..........++.++.++||+|+.+.....+...  +
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iG--I  287 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIG--I  287 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHH--H
Confidence            3345678999999999999999999999976  66777788887776666668899999999999987544333221  1


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .++. .....+|.+++++|++..++..+...++   ..   +..+|+++|.||.|+...  ......             
T Consensus       288 eRs~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~---~~~~~~i~v~NK~DL~~~--~~~~~~-------------  345 (454)
T COG0486         288 ERAK-KAIEEADLVLFVLDASQPLDKEDLALIE---LL---PKKKPIIVVLNKADLVSK--IELESE-------------  345 (454)
T ss_pred             HHHH-HHHHhCCEEEEEEeCCCCCchhhHHHHH---hc---ccCCCEEEEEechhcccc--cccchh-------------
Confidence            2222 2345779999999999667777777666   12   222389999999999876  322111             


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +....     ...+..|+.++.+++.|.+.|...+...
T Consensus       346 ~~~~~-----~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         346 KLANG-----DAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             hccCC-----CceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            00000     1123446666677777777777766654

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.72  E-value=2.8e-17  Score=123.82  Aligned_cols=168  Identities=18%  Similarity=0.272  Sum_probs=107.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCccccc----------------CCCCCcceeeEeEeee-eeCCcEEEEEeCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----------------AGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLF   80 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~   80 (228)
                      +-++|+++|+.++|||||+++|++.......                ......|......... ......+.++||||..
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3478999999999999999999865421000                0112344443333322 2567789999999932


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~  160 (228)
                                 ++...+......+|++++|+++..+......+.+..+...   ..  |+++++||+|.. .  ..+.+.
T Consensus        82 -----------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~---~~--p~ivvlNK~D~~-~--~~~~~~  142 (188)
T PF00009_consen   82 -----------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL---GI--PIIVVLNKMDLI-E--KELEEI  142 (188)
T ss_dssp             -----------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT---T---SEEEEEETCTSS-H--HHHHHH
T ss_pred             -----------ceeecccceecccccceeeeeccccccccccccccccccc---cc--ceEEeeeeccch-h--hhHHHH
Confidence                       2333333345577999999999888888888877777554   22  699999999998 3  455555


Q ss_pred             hhccCCchHH-HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          161 LGHECPKPLK-EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       161 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      +++     +. .+.+.....--.....++.|+.++.++.+|++.|.+.+|
T Consensus       143 ~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  143 IEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            555     33 332222110000001234577788999999999988775

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=4.5e-16  Score=129.54  Aligned_cols=166  Identities=19%  Similarity=0.150  Sum_probs=103.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .|+|+|.++||||||||+|++...   ....++.|+........... ...+.++|+||+.........+...+.+.+  
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~---kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--  234 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKP---KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--  234 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCC---ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH--
Confidence            799999999999999999998763   12344555554444433334 677999999999764433333334444433  


Q ss_pred             ccCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090          100 AKDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~---~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                        .+.+++++|+|++..   -+..+ ..+.+.+......-..+|.++|+||+|+...  .+.           +.++.+.
T Consensus       235 --er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~-----------l~~l~~~  299 (424)
T PRK12297        235 --ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EEN-----------LEEFKEK  299 (424)
T ss_pred             --hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHH-----------HHHHHHH
Confidence              356999999999632   22222 2344444433211123589999999997432  211           1112222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      ...      ..+..||.++.++++|++.|.+.+.+..
T Consensus       300 l~~------~i~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        300 LGP------KVFPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             hCC------cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            221      2234577788999999999998887753

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.72  E-value=7.2e-16  Score=131.44  Aligned_cols=174  Identities=16%  Similarity=0.210  Sum_probs=107.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...+|+|+|++|+|||||+|+|++....  .......|+..........++..+.++||||+.........  .+....+
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~--~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~--~e~~~~~  285 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERS--VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASG--HEYYASL  285 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcc--cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccch--HHHHHHH
Confidence            3579999999999999999999988641  12222333332222222245667889999998543222111  1222222


Q ss_pred             h--hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           98 G--MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        98 ~--~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .  .....+|++++|+|++.+.+..+.+++..+..   ..  +|+++|+||+|+...  .......+.     +.+....
T Consensus       286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~---~~--~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~  353 (472)
T PRK03003        286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE---AG--RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQ  353 (472)
T ss_pred             HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccCCh--hHHHHHHHH-----HHHhccc
Confidence            1  23467899999999998888888776655543   12  389999999998754  222211111     1111111


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      ..     +...+..||.++.+++++++.+.+.+....
T Consensus       354 ~~-----~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        354 VP-----WAPRVNISAKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             CC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            00     112245688899999999999988887543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.72  E-value=4.1e-16  Score=116.59  Aligned_cols=136  Identities=18%  Similarity=0.278  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC-CcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      +.....+|+|+|++|+|||||+|+|++.... ...... ..|.....+..   + ..+.++||||+.......... .++
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~~-~~~   87 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEEK-EKW   87 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhHH-HHH
Confidence            3455679999999999999999999987521 111111 23333333321   2 368999999987654332221 223


Q ss_pred             HHHHh---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090           94 VKCLG---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        94 ~~~~~---~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~  163 (228)
                      ...+.   .....++++++++++..+++..+.+.+..+...     .+|+++++||+|....  ......+..
T Consensus        88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~--~~~~~~~~~  153 (179)
T TIGR03598        88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK--SELNKQLKK  153 (179)
T ss_pred             HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH--HHHHHHHHH
Confidence            22221   122356899999999878888888766655432     2379999999998755  444444443

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.72  E-value=1.9e-16  Score=120.70  Aligned_cols=165  Identities=13%  Similarity=0.110  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeeEeEeeee--------------------------------eC
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVL--------------------------------KD   67 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--------------------------------~~   67 (228)
                      +|+++|++|+|||||+.+|++... ...+......+..........                                ..
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            799999999999999999988732 111111222232222111110                                01


Q ss_pred             CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (228)
Q Consensus        68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~s~~~~~~l~~~~~~~~~~~~~~~llv~~~  146 (228)
                      ...+.++||||.           ..+...+......+|++++|+++... ........+..+.. .+.   +|+++++||
T Consensus        82 ~~~i~~iDtPG~-----------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK  146 (203)
T cd01888          82 VRHVSFVDCPGH-----------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNK  146 (203)
T ss_pred             ccEEEEEECCCh-----------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEc
Confidence            156899999992           22333333344577999999999842 33333444443322 222   378999999


Q ss_pred             CCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +|+...  ......++.     +++..+.   ........+..||.++.++++|++.+.+.+++
T Consensus       147 ~Dl~~~--~~~~~~~~~-----i~~~~~~---~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         147 IDLVKE--EQALENYEQ-----IKKFVKG---TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             hhccCH--HHHHHHHHH-----HHHHHhc---cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            998764  444433333     3332221   10011123456778889999999999887765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04134 Rho3 Rho3 subfamily

Probab=99.71  E-value=1.6e-16  Score=119.80  Aligned_cols=169  Identities=17%  Similarity=0.090  Sum_probs=100.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ++|+|+|++|+|||||++.+++.....    ....|...........+  ...+.++||||...           +....
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~----~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----------~~~l~   65 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQ----VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE-----------FDRLR   65 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCC----ccCCcceeeeEEEEEECCEEEEEEEEECCCChh-----------ccccc
Confidence            479999999999999999999876522    22233322222111122  24689999999432           11222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCc--hHHHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK--PLKEIL  173 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~--~~~~~~  173 (228)
                      ...+..++++++|+++++.-|....  .|+..+......   .|+++|.||+|+...  ......+......  ...+..
T Consensus        66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~---~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~  140 (189)
T cd04134          66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPG---VKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEGL  140 (189)
T ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHHH
Confidence            2345678999999999866666544  366666654322   389999999998765  4433322221111  111222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.+...-.  -..+..||.++.+++++++.+.+.+..
T Consensus       141 ~~~~~~~~--~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         141 AVAKRINA--LRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             HHHHHcCC--CEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            22211100  011345778889999999988877664

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.71  E-value=4e-16  Score=131.95  Aligned_cols=162  Identities=19%  Similarity=0.215  Sum_probs=107.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+|+|++|+|||||+|.|++...  ........++.........+.+..+.++||||+....   ..+.+.+......+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRD--AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD---DGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCc--ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc---hhHHHHHHHHHHHH
Confidence            489999999999999999998763  1122222233333333334567789999999986432   22334444444455


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
                      ...+|++++++|+..+++..+....+++...   .  +|+++|.||+|....  ...           ..++...     
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~---~--~piilVvNK~D~~~~--~~~-----------~~~~~~l-----  132 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS---G--KPVILVANKIDGKKE--DAV-----------AAEFYSL-----  132 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh---C--CCEEEEEECccCCcc--ccc-----------HHHHHhc-----
Confidence            5678999999999888888887776766542   2  379999999998754  321           1111111     


Q ss_pred             EEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                       .+...+..||.++.++.++++.+.+.+++.
T Consensus       133 -g~~~~~~vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       133 -GFGEPIPISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             -CCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence             112334567778899999999998887653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.71  E-value=6.1e-16  Score=114.14  Aligned_cols=163  Identities=15%  Similarity=0.113  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .|+|+|++|+|||||+|+|++......  .....|...........  .+..+.++||||...           +.....
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~   68 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA   68 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence            589999999999999999998764221  11223333332322221  356789999999432           112222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      .....+|++++++++++.........+..+...   .  .|+++++||+|........+...+..        .......
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~---~--~p~ivv~NK~Dl~~~~~~~~~~~~~~--------~~~~~~~  135 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAA---N--VPFIVALNKIDKPNANPERVKNELSE--------LGLQGED  135 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc---C--CCEEEEEEceecccccHHHHHHHHHH--------hhccccc
Confidence            334577999999999865555555545444321   2  37999999999864311222222221        1100000


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .+......+..++.++.++++|++.|.++..
T Consensus       136 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         136 EWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             cccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            0000112345677788999999999887654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04112 Rab26 Rab26 subfamily

Probab=99.71  E-value=1.1e-15  Score=115.34  Aligned_cols=163  Identities=15%  Similarity=0.163  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+|+|+.|||||||++.+++......   ....|+...... ....+  ...+.++||||-           ..+....
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~~   67 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGAFLNG---NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ-----------ERFRSVT   67 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcc---CcCCcccceeEEEEEEECCEEEEEEEEeCCCc-----------HHHHHhh
Confidence            799999999999999999987764211   112222211111 11122  235789999992           1222223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++++|+++.-|... ..++..+.......  .|+++++||.|+...  +.+..       .....+.+..
T Consensus        68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~--~~~~~-------~~~~~l~~~~  136 (191)
T cd04112          68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGE--RVVKR-------EDGERLAKEY  136 (191)
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhc--cccCH-------HHHHHHHHHc
Confidence            334567899999999986555543 33555665544323  389999999998643  22211       0122222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ  214 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~  214 (228)
                      ..      ..+..|+.++.+++++++.|.+.+.+....
T Consensus       137 ~~------~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~  168 (191)
T cd04112         137 GV------PFMETSAKTGLNVELAFTAVAKELKHRKYE  168 (191)
T ss_pred             CC------eEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence            21      123457778899999999998888876443

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.71  E-value=1.4e-15  Score=128.31  Aligned_cols=169  Identities=16%  Similarity=0.141  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      -.|+|+|.++||||||||+|++...   ....++.|+..............+.++||||+.+.......+..++.+.+  
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akp---kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi--  234 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKP---KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--  234 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCc---cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence            4699999999999999999998754   23444556555444444456678999999999765443333334444433  


Q ss_pred             ccCCccEEEEEEeCCCC----CCHHHHH-HHHHHHHHhC---------ccccccEEEEEeCCCCCccchhhHHHHhhccC
Q 027090          100 AKDGIHAFLVVFSVTNR----FSQEEET-AVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC  165 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~----~s~~~~~-~l~~~~~~~~---------~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~  165 (228)
                        .+.+++++|+|++..    -...+.. +.+.+.....         ....+|+++++||+|+...  ..+.+.+..  
T Consensus       235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l~~--  308 (500)
T PRK12296        235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFVRP--  308 (500)
T ss_pred             --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHHHH--
Confidence              456999999999621    1122222 2222222211         1123589999999998754  444433332  


Q ss_pred             CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                           .+ .....      ..+..||.++.++++|++.|.+++...
T Consensus       309 -----~l-~~~g~------~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        309 -----EL-EARGW------PVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             -----HH-HHcCC------eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence                 11 11111      224457777899999999998888764

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.71  E-value=5.1e-16  Score=114.44  Aligned_cols=160  Identities=15%  Similarity=0.126  Sum_probs=93.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 027090           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (228)
                      |+++|+.|+|||||++.+.+.....    ....|........ ......+.++||||-...           ........
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~----~~~pt~g~~~~~i-~~~~~~l~i~Dt~G~~~~-----------~~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLE----SVVPTTGFNSVAI-PTQDAIMELLEIGGSQNL-----------RKYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcc----cccccCCcceEEE-eeCCeEEEEEECCCCcch-----------hHHHHHHH
Confidence            7899999999999999999875421    1222322222222 245667899999994321           11222334


Q ss_pred             CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090          102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (228)
Q Consensus       102 ~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
                      +.+|++++|+|.++..+.... .++..+...   ....|++++.||.|....  ..+..+.....   ...+.+.....+
T Consensus        66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~~~--~~~~~i~~~~~---~~~~~~~~~~~~  137 (164)
T cd04162          66 SGSQGLIFVVDSADSERLPLARQELHQLLQH---PPDLPLVVLANKQDLPAA--RSVQEIHKELE---LEPIARGRRWIL  137 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCcCC--CCHHHHHHHhC---ChhhcCCCceEE
Confidence            577999999999855444332 233333221   123489999999998655  44443222200   122222222222


Q ss_pred             EEeeCCCcccccchHHHHHHHHHHH
Q 027090          181 VLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                      +-.......++.+.+++.++++.+.
T Consensus       138 ~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         138 QGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             EEeeecCCCChhHHHHHHHHHHHHh
Confidence            2234455668888999999998664

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.71  E-value=7.4e-16  Score=126.13  Aligned_cols=161  Identities=22%  Similarity=0.177  Sum_probs=97.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+|+|.+|+|||||+|+|++.......  ....|.+.........++..+.++||||+.... +.. ..+.+...+ 
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~~-lie~f~~tl-  263 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PHE-LVAAFRATL-  263 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCcccccC-CHH-HHHHHHHHH-
Confidence            368999999999999999999998642221  122333333333332345689999999984321 111 112222222 


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      .....+|++++|+|+++..+..+.. +.+++... +.. .+|+++|+||+|....  ..+..            .... .
T Consensus       264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~-~~piIlV~NK~Dl~~~--~~v~~------------~~~~-~  326 (351)
T TIGR03156       264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAE-DIPQLLVYNKIDLLDE--PRIER------------LEEG-Y  326 (351)
T ss_pred             HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccC-CCCEEEEEEeecCCCh--HhHHH------------HHhC-C
Confidence            2345789999999998666655443 33344332 311 2389999999998654  33221            1000 0


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                            ...+..||.++.++++|++.|.+.
T Consensus       327 ------~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       327 ------PEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             ------CCEEEEEccCCCCHHHHHHHHHhh
Confidence                  112456788889999999988654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.71  E-value=5.1e-16  Score=113.70  Aligned_cols=156  Identities=18%  Similarity=0.138  Sum_probs=90.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|+|||||+|++++....    .....|...........++  ..+.++||||...           +....
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~l~   66 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFV----DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-----------YSAMR   66 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCc----CCcCCcchheEEEEEEECCEEEEEEEEECCCCcc-----------hHHHH
Confidence            58999999999999999999987641    1222232222211111233  3477899999432           22222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......++++++++.++.-+.... .++..+...... ...|++++.||+|....  ........        ++.+..
T Consensus        67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~--~~~~~~~~--------~~~~~~  135 (162)
T cd04138          67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAAR--TVSSRQGQ--------DLAKSY  135 (162)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--eecHHHHH--------HHHHHh
Confidence            2334567999999999854444433 244444433221 12489999999998653  21111111        122211


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ..      ..+..|+.++.+++++++.+.+.
T Consensus       136 ~~------~~~~~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138         136 GI------PYIETSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             CC------eEEEecCCCCCCHHHHHHHHHHH
Confidence            11      12345777889999999887654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.71  E-value=2e-15  Score=112.11  Aligned_cols=160  Identities=16%  Similarity=0.102  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|..|+|||||++.+.+....    .....|............+  ..+.++||||...           +....
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~l~   67 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFP----DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE-----------FTAMR   67 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC----CCcCCcccceEEEEEEECCEEEEEEEEeCCCchh-----------hHHHh
Confidence            58999999999999999999877652    1122333222221112233  3588999999332           22233


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......|+++++++++++.|..... ++..+..... ....|++++.||+|+...  +.+....       ...+.+..
T Consensus        68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~a~~~  137 (172)
T cd04141          68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTEE-------GRNLAREF  137 (172)
T ss_pred             HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHHH-------HHHHHHHh
Confidence            34455779999999999777777654 4444444322 122489999999998644  3322110       11222221


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.      .....||.++.+++++++.+.+.+.+
T Consensus       138 ~~------~~~e~Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         138 NC------PFFETSAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             CC------EEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            11      12245777789999999888765554

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PRK04213 GTP-binding protein; Provisional

Probab=99.70  E-value=1.3e-15  Score=115.96  Aligned_cols=173  Identities=19%  Similarity=0.176  Sum_probs=96.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH--
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK--   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~--   95 (228)
                      ...+|+++|++|+|||||+|+|++.... .+. ..+.|....  ...   ...+.++||||++..........+.+..  
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~-~~~~t~~~~--~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGK-RPGVTRKPN--HYD---WGDFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCC-CCceeeCce--EEe---ecceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4578999999999999999999987642 211 112222221  111   1258999999986544332222122222  


Q ss_pred             --HHhhccCCccEEEEEEeCCCCCCH-----------HHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhh
Q 027090           96 --CLGMAKDGIHAFLVVFSVTNRFSQ-----------EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        96 --~~~~~~~~~~~il~v~~~~~~~s~-----------~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~  162 (228)
                        ++......+++++++++.......           .+...+..+..   ..  .|+++++||+|....  .  .+...
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~p~iiv~NK~Dl~~~--~--~~~~~  151 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LG--IPPIVAVNKMDKIKN--R--DEVLD  151 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cC--CCeEEEEECccccCc--H--HHHHH
Confidence              233234567899999998632111           11222222221   12  389999999998654  3  11111


Q ss_pred             ccCCchHHHHHHhcCCeEEEe-eCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          163 HECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      .     +.+..... ..+... ...+..||.++ +++++++.|.+.+.+...
T Consensus       152 ~-----~~~~~~~~-~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        152 E-----IAERLGLY-PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             H-----HHHHhcCC-ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            1     11111110 011000 12356788889 999999999888776544

>cd01864 Rab19 Rab19 subfamily

Probab=99.70  E-value=4.8e-16  Score=114.58  Aligned_cols=159  Identities=14%  Similarity=0.120  Sum_probs=94.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+++|++|+|||||++++.+......  ...+.+.+....... ..+  ..+.++||||.           ..+...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~-----------~~~~~~   68 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSER--QGNTIGVDFTMKTLE-IEGKRVKLQIWDTAGQ-----------ERFRTI   68 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCccc--CCCccceEEEEEEEE-ECCEEEEEEEEECCCh-----------HHHHHH
Confidence            37999999999999999999987654211  111222222222222 233  36789999992           122233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++++++++.-|.... .++..+.......  .|+++|.||+|+...  +....  +     ....+.+.
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~--~~~~~--~-----~~~~~~~~  137 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQ--REVLF--E-----EACTLAEK  137 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCH--H-----HHHHHHHH
Confidence            33445678999999999865555443 4555555432222  379999999998654  22110  0     12222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ...     ...+..|+.++.+++++++.+.+.
T Consensus       138 ~~~-----~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         138 NGM-----LAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cCC-----cEEEEEECCCCCCHHHHHHHHHHh
Confidence            211     112355777889999999887653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.70  E-value=7.8e-16  Score=131.24  Aligned_cols=164  Identities=21%  Similarity=0.183  Sum_probs=105.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...+|+|+|++|||||||+|.|++....... .....|.+.... .....+..+.++||||+....   ......+....
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~-~~~~~~~~~~l~DT~G~~~~~---~~~~~~~~~~~  111 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSY-DAEWNGRRFTVVDTGGWEPDA---KGLQASVAEQA  111 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEE-EEEECCcEEEEEeCCCcCCcc---hhHHHHHHHHH
Confidence            3468999999999999999999987532111 122333333332 233566779999999976322   11223333334


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ..+...+|++++|+|++.+.+..+..+...+...     .+|+++|.||+|....  ...           ..+....  
T Consensus       112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~--~~~-----------~~~~~~~--  171 (472)
T PRK03003        112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERG--EAD-----------AAALWSL--  171 (472)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCcc--chh-----------hHHHHhc--
Confidence            4455678999999999988887776666666531     2389999999998543  110           0011110  


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .    +...+..||.++.++.+|++.|.+.+++
T Consensus       172 g----~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        172 G----LGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             C----CCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence            0    1112456888899999999999887765

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.70  E-value=5.8e-16  Score=116.35  Aligned_cols=165  Identities=21%  Similarity=0.232  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCC--------------CCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS   86 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~   86 (228)
                      +|+|+|..|+|||||+|+|++.........              ....+........ ......+.++||||..+.    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF-EWPDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE-eeCCEEEEEEeCCCcHHH----
Confidence            489999999999999999998765321100              0112222222211 234567899999995431    


Q ss_pred             HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCC
Q 027090           87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP  166 (228)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~  166 (228)
                         ...+..    ....+|++++++++....+......+..+..  .   .+|+++++||+|....  ..+....+.   
T Consensus        76 ---~~~~~~----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~---~~~i~iv~nK~D~~~~--~~~~~~~~~---  138 (189)
T cd00881          76 ---SSEVIR----GLSVSDGAILVVDANEGVQPQTREHLRIARE--G---GLPIIVAINKIDRVGE--EDLEEVLRE---  138 (189)
T ss_pred             ---HHHHHH----HHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--C---CCCeEEEEECCCCcch--hcHHHHHHH---
Confidence               122222    2346799999999986666665555544433  1   2389999999999864  444443333   


Q ss_pred             chHHHHHHhcCC-----eE---EEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          167 KPLKEILQLCDN-----RC---VLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       167 ~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                        +.+..+....     ..   ......+..|+.++.+++++++.+.+.++
T Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence              3223222110     00   01122345677788999999999888764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04124 RabL2 RabL2 subfamily

Probab=99.70  E-value=6.4e-16  Score=113.52  Aligned_cols=154  Identities=18%  Similarity=0.063  Sum_probs=92.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+++|.+|||||||++.+.+......    ...+....... ....+  ...+.++||||..           .+....
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~   66 (161)
T cd04124           2 KIILLGDSAVGKSKLVERFLMDGYEPQ----QLSTYALTLYKHNAKFEGKTILVDFWDTAGQE-----------RFQTMH   66 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC----cCCceeeEEEEEEEEECCEEEEEEEEeCCCch-----------hhhhhh
Confidence            799999999999999999987654211    12222111111 11122  3357899999932           222233


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......|++++++|++++.+.... .++..+......   .|+++++||+|+...  . ...         ...+.+..
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~p~ivv~nK~Dl~~~--~-~~~---------~~~~~~~~  131 (161)
T cd04124          67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE---IPCIVVANKIDLDPS--V-TQK---------KFNFAEKH  131 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CcEEEEEECccCchh--H-HHH---------HHHHHHHc
Confidence            3445678999999999866565543 456666543222   389999999997432  1 111         11111111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..      ..+..|+.++.+++++++.+.+.+.+
T Consensus       132 ~~------~~~~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124         132 NL------PLYYVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             CC------eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            11      12345777889999999988776654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.70  E-value=2.5e-15  Score=113.94  Aligned_cols=173  Identities=18%  Similarity=0.171  Sum_probs=102.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCC---cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+|+|++|+|||||+|+|+|...+..+.....   .|.....+..  .....+.++||||+.+.....    +++.+.
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~----~~~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH--PKFPNVTLWDLPGIGSTAFPP----DDYLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec--CCCCCceEEeCCCCCcccCCH----HHHHHH
Confidence            5799999999999999999999765332221111   1211111111  123468999999988654332    222222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchh-------hHHHHhhccCCchH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-------TLEDFLGHECPKPL  169 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~-------~~~~~~~~~~~~~~  169 (228)
                      +  .....|+++++.+  .+++..+..+++.+... +    +++++|+||+|...+...       .....++.... .+
T Consensus        76 ~--~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~-~~  145 (197)
T cd04104          76 M--KFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRD-NC  145 (197)
T ss_pred             h--CccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHHHHH-HH
Confidence            2  2456788888754  47888898888888764 2    269999999998543101       02233333111 23


Q ss_pred             HHHHHh---cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          170 KEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       170 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      .+....   ....+++......    .+.++..|.+.|...++++.
T Consensus       146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhHHH
Confidence            333322   2233444333321    34789999999999988854

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04120 Rab12 Rab12 subfamily

Probab=99.69  E-value=2.4e-15  Score=114.22  Aligned_cols=158  Identities=13%  Similarity=0.141  Sum_probs=97.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce--eeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .|+++|..|+|||||++.+.....    ......|.  +....... .++  ..+.++||+|-.           .+...
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f----~~~~~~Ti~~~~~~~~i~-~~~~~v~l~iwDtaGqe-----------~~~~l   65 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTF----CEACKSGVGVDFKIKTVE-LRGKKIRLQIWDTAGQE-----------RFNSI   65 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCC----CCcCCCcceeEEEEEEEE-ECCEEEEEEEEeCCCch-----------hhHHH
Confidence            589999999999999999987654    11222332  22222222 233  458999999922           22223


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      ....++.+|++++|+|++++-|..... |+..+.......  .|+++|.||+|+...  +++....       ..++.+.
T Consensus        66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~--~~v~~~~-------~~~~a~~  134 (202)
T cd04120          66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REISRQQ-------GEKFAQQ  134 (202)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCHHH-------HHHHHHh
Confidence            334566889999999999777776654 555554443323  389999999998644  3332111       1112211


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ... +.    ....||.++.++.++++.+.+.+..
T Consensus       135 ~~~-~~----~~etSAktg~gV~e~F~~l~~~~~~  164 (202)
T cd04120         135 ITG-MR----FCEASAKDNFNVDEIFLKLVDDILK  164 (202)
T ss_pred             cCC-CE----EEEecCCCCCCHHHHHHHHHHHHHH
Confidence            111 11    1245788889999999888776654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=99.69  E-value=1.4e-15  Score=114.38  Aligned_cols=163  Identities=13%  Similarity=0.107  Sum_probs=101.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+++|..|+|||||+..+.+...  ........+.+....... .++  ..+.++||+|..           .+...
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~i~-~~~~~~~l~iwDt~G~~-----------~~~~l   71 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTIL-LDGRRVKLQLWDTSGQG-----------RFCTI   71 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCcceeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------HHHHH
Confidence            37999999999999999999987543  111111222222212121 223  458899999932           22233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .....+.+|++++|+|++++.|..... |++.+......   .|++||.||.|+...  +.+..       ...+++.+.
T Consensus        72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~---~piilVGNK~DL~~~--~~v~~-------~~~~~~a~~  139 (189)
T cd04121          72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPG---VPKILVGNRLHLAFK--RQVAT-------EQAQAYAER  139 (189)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECccchhc--cCCCH-------HHHHHHHHH
Confidence            334557889999999999777777654 66666554332   389999999998643  22210       112223332


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      ....      ....||.++.+++++++.+.+.+..+.+
T Consensus       140 ~~~~------~~e~SAk~g~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         140 NGMT------FFEVSPLCNFNITESFTELARIVLMRHG  171 (189)
T ss_pred             cCCE------EEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence            2211      2245778889999999999876665433

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.69  E-value=8.8e-16  Score=113.29  Aligned_cols=163  Identities=14%  Similarity=0.038  Sum_probs=89.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccc--CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+|+|++|+|||||++.|++......+  ......|........ ...+..+.++||||...           +.....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTI-EVGNARLKFWDLGGQES-----------LRSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEE-EECCEEEEEEECCCChh-----------hHHHHH
Confidence            5899999999999999999875432111  111222322222222 24567899999999432           222222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      .....+|++++++|+...-+.... .++..+..... ....|+++++||+|....  .......+.     +....+...
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~~  140 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEIG  140 (167)
T ss_pred             HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC--CCHHHHHHH-----hcccccccc
Confidence            334678999999998743222221 22222222111 112389999999998654  322221111     111110011


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ..   ....+..||.++.++++++++|.+
T Consensus       141 ~~---~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         141 RR---DCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             CC---ceEEEEeeCCCCcCHHHHHHHHhc
Confidence            00   012345678888999999988753

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.69  E-value=1.5e-15  Score=111.87  Aligned_cols=158  Identities=18%  Similarity=0.125  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+++|++|+|||||++++++.....    ....|....  ...... .....+.++||||..           ++....
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~   66 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVS----KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP-----------EYLEVR   66 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCC----CCCCccceeEEEEEEEECCeEEEEEEEECCccH-----------HHHHHH
Confidence            79999999999999999999887522    222222221  111111 123458899999942           122233


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc---cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~---~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ......++++++++|++++-+.... .++..+.....+   ....|+++|.||+|....  ..+..       .......
T Consensus        67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~  137 (168)
T cd04119          67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSE-------DEGRLWA  137 (168)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCH-------HHHHHHH
Confidence            3345678999999999855444433 456666554432   122489999999998632  11110       0011122


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ......+      +..|+.++.++.++++.|.+.+
T Consensus       138 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         138 ESKGFKY------FETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             HHcCCeE------EEEECCCCCCHHHHHHHHHHHH
Confidence            2222111      3456777899999999887654

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.69  E-value=1.4e-15  Score=128.89  Aligned_cols=159  Identities=20%  Similarity=0.184  Sum_probs=102.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+|+|.+|+|||||+|.|++........ ..+.|.+.. .......+..+.++||||+.+...   .....+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~-~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRI-YGEAEWLGREFILIDTGGIEPDDD---GFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccce-EEEEEECCcEEEEEECCCCCCcch---hHHHHHHHHHHH
Confidence            479999999999999999999876411111 122333333 233335667899999999876221   122333343444


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      +...+|++++++++..+++..+....+++...   .  +|+++++||+|....  ...           ..++...    
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~---~--~piilv~NK~D~~~~--~~~-----------~~~~~~l----  134 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS---N--KPVILVVNKVDGPDE--EAD-----------AYEFYSL----  134 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CcEEEEEECccCccc--hhh-----------HHHHHhc----
Confidence            45678999999999877888777666666543   2  379999999996532  111           1111111    


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                        .+...+..|+.++.++.++++.|...
T Consensus       135 --g~~~~~~iSa~~g~gv~~l~~~I~~~  160 (435)
T PRK00093        135 --GLGEPYPISAEHGRGIGDLLDAILEE  160 (435)
T ss_pred             --CCCCCEEEEeeCCCCHHHHHHHHHhh
Confidence              01123456778889999999888763

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.69  E-value=1.1e-15  Score=113.57  Aligned_cols=162  Identities=20%  Similarity=0.133  Sum_probs=90.4

Q ss_pred             EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccC
Q 027090           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD  102 (228)
Q Consensus        24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~  102 (228)
                      |+|++|||||||+|+|++....   ......++........... +..+.++||||+.+.....+.....+..    ...
T Consensus         1 iiG~~~~GKStll~~l~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK---VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc---ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence            5899999999999999998641   1222223222222222244 6789999999986533222221122222    234


Q ss_pred             CccEEEEEEeCCCCC------CHHHHH-HHHHHHHHhCc-----cccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090          103 GIHAFLVVFSVTNRF------SQEEET-AVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus       103 ~~~~il~v~~~~~~~------s~~~~~-~l~~~~~~~~~-----~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      .+|++++++|+....      +..+.. +...+......     ...+|+++++||+|....  .........       
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~-------  144 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELVR-------  144 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHHH-------
Confidence            579999999998442      233322 23333222110     012489999999999765  444432110       


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      .......      ...+..++.++.+++++++.+...
T Consensus       145 ~~~~~~~------~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         145 ELALEEG------AEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             HHhcCCC------CCEEEEehhhhcCHHHHHHHHHhh
Confidence            1111111      112345667778999999877653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.69  E-value=2.7e-15  Score=111.70  Aligned_cols=163  Identities=19%  Similarity=0.126  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|.+|+|||||++.+.....    ......|............+  ..+.++||+|...           +....
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f----~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF----PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-----------YDRLR   66 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc-----------hhhhh
Confidence            5899999999999999999987654    22233343322221111233  4578999999432           11222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----CchHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLK  170 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~~~  170 (228)
                      ......+|++++|++++++-|....  .|+..+.....+   .|++++.||+|+...  ..+.+.+....     .+...
T Consensus        67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~---~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~~  141 (175)
T cd01874          67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK---TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETGE  141 (175)
T ss_pred             hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHHH
Confidence            3345678999999999876666654  355555543322   389999999998654  34333332211     11122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ++.+.... +    .....||.++.+++++++.+.+.
T Consensus       142 ~~a~~~~~-~----~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         142 KLARDLKA-V----KYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             HHHHHhCC-c----EEEEecCCCCCCHHHHHHHHHHH
Confidence            22222111 1    11345778889999999877653

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04144 Ras2 Ras2 subfamily

Probab=99.69  E-value=1.4e-15  Score=114.81  Aligned_cols=163  Identities=17%  Similarity=0.149  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+++|.+|+|||||++.+.+....  .  ....|............+  ..+.++||||...           +.....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~--~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFV--E--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE-----------YTALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC--c--cCCCchHhhEEEEEEECCEEEEEEEEECCCchh-----------hHHHHH
Confidence            4899999999999999999876541  1  112222211111111233  3478999999422           222223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ..+..+|+++++++.++..|.... .++..+...... ....|++++.||+|+...  +.+...       ...++....
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~-------~~~~~~~~~  136 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTE-------EGAALARRL  136 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHH-------HHHHHHHHh
Confidence            345577999999999865555543 355555443221 122489999999998643  222110       011222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      ...      .+..||.++.+++++++.+.+.+.++..
T Consensus       137 ~~~------~~e~SAk~~~~v~~l~~~l~~~l~~~~~  167 (190)
T cd04144         137 GCE------FIEASAKTNVNVERAFYTLVRALRQQRQ  167 (190)
T ss_pred             CCE------EEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            211      2345777889999999988877665433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.69  E-value=1.6e-15  Score=111.46  Aligned_cols=158  Identities=22%  Similarity=0.164  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|+|||||++.+++...    ......|...........++  ..+.++||||..+.           ....
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~   67 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF-----------SAMR   67 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch-----------hHHH
Confidence            6899999999999999999987754    22222232221111111233  35788999995432           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......|++++++++++.-+.... .++..+....... ..|++++.||+|....  ..+...       ...++.+..
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~piiiv~NK~Dl~~~--~~~~~~-------~~~~~~~~~  137 (164)
T cd04145          68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRD-EFPMILVGNKADLEHQ--RKVSRE-------EGQELARKL  137 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeeCcccccc--ceecHH-------HHHHHHHHc
Confidence            2233467999999999855444443 2444444332211 2389999999998654  322110       011222221


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ..      ..+..||.++.+++++++.+.+.+
T Consensus       138 ~~------~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         138 KI------PYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             CC------cEEEeeCCCCCCHHHHHHHHHHhh
Confidence            11      124557778899999999887654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.69  E-value=3.1e-15  Score=133.20  Aligned_cols=173  Identities=18%  Similarity=0.167  Sum_probs=109.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...+|+|+|++|+|||||+|+|++...  ..+.....|+..........++..+.++||||+.........  .+....+
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~--~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~--~e~~~~~  524 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEER--AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTG--AEYYSSL  524 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccc--cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchh--HHHHHHH
Confidence            347999999999999999999998863  112223334333333323356677889999998653322211  2222222


Q ss_pred             h--hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           98 G--MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        98 ~--~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .  .+.+.+|++++|+|++.+.+..+...+..+...   .  +|+++|+||+|+...  .....+.+.     +......
T Consensus       525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~---~--~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~  592 (712)
T PRK09518        525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA---G--RALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDR  592 (712)
T ss_pred             HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccC
Confidence            1  234678999999999988888887766555331   2  389999999998754  332221111     1111111


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .     .+...+..||.++.++++|++.+.+..+..
T Consensus       593 ~-----~~~~ii~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        593 V-----TWARRVNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             C-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            0     112234468889999999999998888763

>cd04158 ARD1 ARD1 subfamily

Probab=99.69  E-value=1.6e-15  Score=112.32  Aligned_cols=161  Identities=16%  Similarity=0.118  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|..|||||||++.+.+...    . ....|........ ......+.++||||....           .......
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~----~-~~~~T~~~~~~~~-~~~~~~i~l~Dt~G~~~~-----------~~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF----M-QPIPTIGFNVETV-EYKNLKFTIWDVGGKHKL-----------RPLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC----C-CcCCcCceeEEEE-EECCEEEEEEECCCChhc-----------chHHHHH
Confidence            589999999999999999998743    1 1223332222222 245667999999995432           1122223


Q ss_pred             cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh-cCC
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-CDN  178 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  178 (228)
                      ...+|++++|+|.+.+-+..+. .++..+..... ....|++++.||+|+...  ....+..+.     + ...+. +..
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~-~~~~~~~~~  134 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA--LSVEEMTEL-----L-SLHKLCCGR  134 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC--CCHHHHHHH-----h-CCccccCCC
Confidence            3567999999999854444333 23333322111 111389999999998643  222221111     0 01111 111


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .+.+    ...||.++.+++++++.|.+.+.++
T Consensus       135 ~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         135 SWYI----QGCDARSGMGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             cEEE----EeCcCCCCCCHHHHHHHHHHHHhhc
Confidence            2222    2447888899999999998777664

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.68  E-value=1.1e-15  Score=129.26  Aligned_cols=158  Identities=21%  Similarity=0.239  Sum_probs=96.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+.+|+++|.+|+|||||+|+|++....  .+.....|+..........++..+.++||||+.+..   ......-....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a--~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~---~~ie~~gi~~~  288 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERA--IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD---DEVEKIGIERS  288 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence            4579999999999999999999987631  122223333322222223467789999999986532   11111111111


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ......+|++++|+|++.+.+..+...+..    ...   +|+++|+||+|+...  ....   .            ...
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~~---~piiiV~NK~DL~~~--~~~~---~------------~~~  344 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDDEILEE----LKD---KPVIVVLNKADLTGE--IDLE---E------------ENG  344 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHHHHHHh----cCC---CCcEEEEEhhhcccc--chhh---h------------ccC
Confidence            223457899999999987777665443322    122   389999999998654  2221   0            000


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                            ...+..|+.++.++++|++.|.+.+..
T Consensus       345 ------~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        345 ------KPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             ------CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence                  112345666777888888888777654

>cd04136 Rap_like Rap-like subfamily

Probab=99.68  E-value=1.3e-15  Score=111.89  Aligned_cols=157  Identities=17%  Similarity=0.147  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|||||||++.+.+....    .....|+..........++  ..+.++||||....           ....
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFV----EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF-----------TAMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC----cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-----------chHH
Confidence            58999999999999999999876541    1122232211111111233  34778999994322           1222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ....+..|++++++++++.-+.... .+++.+...... ...|++++.||+|+...  +.+..  .     ....+.+..
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~--~-----~~~~~~~~~  136 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE--RVVSR--E-----EGQALARQW  136 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceecH--H-----HHHHHHHHc
Confidence            2334577999999999855555443 344444443221 22489999999998643  22211  0     011222221


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      .      ...+..||.++.++.++++.+.+.
T Consensus       137 ~------~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04136         137 G------CPFYETSAKSKINVDEVFADLVRQ  161 (163)
T ss_pred             C------CeEEEecCCCCCCHHHHHHHHHHh
Confidence            1      122455777889999999888654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01865 Rab3 Rab3 subfamily

Probab=99.68  E-value=7e-15  Score=108.39  Aligned_cols=159  Identities=14%  Similarity=0.107  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+++|+.|+|||||++.+++....    .....|..  ........ .....+.++||||..           .+...
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~-----------~~~~~   66 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFT----SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE-----------RYRTI   66 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEEECCEEEEEEEEECCChH-----------HHHHH
Confidence            58999999999999999999987651    11122222  22112111 122458999999932           22223


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .....+.+|++++++|.++.-+.... .+++.+......  ..|++++.||+|+...  +.+..       ....++.+.
T Consensus        67 ~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~--~~~~~-------~~~~~~~~~  135 (165)
T cd01865          67 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE--RVVSS-------ERGRQLADQ  135 (165)
T ss_pred             HHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc--cccCH-------HHHHHHHHH
Confidence            33446788999999999855444433 345554433222  2379999999998654  32110       011222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ....      ....||.++.++.++++.+.+.+.+
T Consensus       136 ~~~~------~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         136 LGFE------FFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             cCCE------EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2211      2345777889999999988776543

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01868 Rab11_like Rab11-like

Probab=99.68  E-value=1.8e-15  Score=111.43  Aligned_cols=157  Identities=16%  Similarity=0.126  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|||||||++++++....  .......+.+....... ..+  ..+.++||||..           ++....
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~~~l~D~~g~~-----------~~~~~~   69 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFN--LDSKSTIGVEFATRSIQ-IDGKTIKAQIWDTAGQE-----------RYRAIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEEEEE-ECCEEEEEEEEeCCChH-----------HHHHHH
Confidence            58999999999999999999987641  11122222222222222 223  357899999932           222223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ....+..+++++++|+++..+.... +++..+.......  .|++++.||+|....  +.+..       +....+....
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~--~~~~~-------~~~~~~~~~~  138 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHL--RAVPT-------EEAKAFAEKN  138 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--ccCCH-------HHHHHHHHHc
Confidence            3344677999999999855555543 3555555543322  389999999998643  22110       0111222211


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      . .     ..+..|+.++.+++++++.+...
T Consensus       139 ~-~-----~~~~~Sa~~~~~v~~l~~~l~~~  163 (165)
T cd01868         139 G-L-----SFIETSALDGTNVEEAFKQLLTE  163 (165)
T ss_pred             C-C-----EEEEEECCCCCCHHHHHHHHHHH
Confidence            1 1     12345777889999999887654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.68  E-value=1.8e-15  Score=113.86  Aligned_cols=164  Identities=16%  Similarity=0.100  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+|+|+.|+|||||++.+.+....    .....|....... ....  ....+.++||||..           ++...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~----~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~   65 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFP----EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE-----------EYDRL   65 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCC----CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch-----------hHHHH
Confidence            37999999999999999999987652    2223333222221 1111  12358999999932           22223


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~--~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .......+|++++++|++++-|.....  |+..+.... ..  .|++++.||.|+...  ......+.   .....++..
T Consensus        66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~  137 (187)
T cd04132          66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PG--TPIMLVGLKTDLRKD--KNLDRKVT---PAQAESVAK  137 (187)
T ss_pred             HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEeChhhhhC--ccccCCcC---HHHHHHHHH
Confidence            333456889999999998666666542  454444332 22  389999999998643  21111010   111222332


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .....     ..+..|+.++.++.++++.+.+.+...
T Consensus       138 ~~~~~-----~~~e~Sa~~~~~v~~~f~~l~~~~~~~  169 (187)
T cd04132         138 KQGAF-----AYLECSAKTMENVEEVFDTAIEEALKK  169 (187)
T ss_pred             HcCCc-----EEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence            22211     123457778899999999887777654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=99.68  E-value=1.6e-15  Score=111.97  Aligned_cols=157  Identities=17%  Similarity=0.140  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+++|+.|+|||||++.+++....    ...+.|....... ....+  ...+.++||||.           ..+...
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~~~   67 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFM----ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ-----------ERFRAV   67 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCcccceeEEEEEEEECCEEEEEEEEECCCc-----------HHHHHH
Confidence            58999999999999999999977541    1222232222111 11122  235789999992           122233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .....+.+|++++|+|++++-|.... .++..+.......  .|++++.||+|+...  ..+..       +...++.+.
T Consensus        68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~-------~~~~~~~~~  136 (166)
T cd04122          68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTY-------EEAKQFADE  136 (166)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCH-------HHHHHHHHH
Confidence            33445688999999999865555543 3555444432222  379999999998654  32210       012222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ...      ..+..||.++.++.+++..+.+.+
T Consensus       137 ~~~------~~~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         137 NGL------LFLECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             cCC------EEEEEECCCCCCHHHHHHHHHHHH
Confidence            211      123457778899999988776544

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.68  E-value=1e-15  Score=112.85  Aligned_cols=159  Identities=18%  Similarity=0.166  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|+|||||++.+++.....  ....+.+.+....... ..+  ..+.++||||..           .+....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~-----------~~~~~~   68 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE-----------RFRTIT   68 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------hHHHHH
Confidence            589999999999999999999775421  1111222222222222 222  357899999922           122222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ....+.+|++++++|+++.-|.... .++..+.......  .|++++.||+|....  ..+..  +     ......+..
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~--~~~~~--~-----~~~~~~~~~  137 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDK--RVVDY--S-----EAQEFADEL  137 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccc--cCCCH--H-----HHHHHHHHc
Confidence            3344678999999999855455443 3455554433222  389999999998654  32210  0     012222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ..      ..+..|+.++.+++++++.|.+.+.
T Consensus       138 ~~------~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         138 GI------PFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             CC------eEEEEECCCCcCHHHHHHHHHHHHH
Confidence            11      2245577778999999998877654

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.68  E-value=4.9e-15  Score=109.82  Aligned_cols=162  Identities=15%  Similarity=0.058  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE--eeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+++|..|||||||++.+.+...    ...+..|......  .... .....+.++||||..           .+....
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~   66 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVF----DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE-----------RFKCIA   66 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC----CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH-----------HHHhhH
Confidence            689999999999999999998765    2222333322221  1111 113468999999932           222233


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|+++.+.-|... ..|+..+..... +...|+++|.||.|+...  ........     ....+.+..
T Consensus        67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~--~~~~~~~~-----~~~~~~~~~  138 (170)
T cd04108          67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSP--AQYALMEQ-----DAIKLAAEM  138 (170)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCcc--ccccccHH-----HHHHHHHHc
Confidence            344568899999999975434443 345555443321 111268899999998543  22110000     011222221


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ...+      +..||.++.+++++++.|..++.+-
T Consensus       139 ~~~~------~e~Sa~~g~~v~~lf~~l~~~~~~~  167 (170)
T cd04108         139 QAEY------WSVSALSGENVREFFFRVAALTFEL  167 (170)
T ss_pred             CCeE------EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            1111      2457778899999999998887663

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01866 Rab2 Rab2 subfamily

Probab=99.68  E-value=3.2e-15  Score=110.54  Aligned_cols=161  Identities=12%  Similarity=0.079  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .+|+|+|++|+|||||++.+++.......  ....+.+........ .....+.++||||.           +++.....
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~~~~   71 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITIDGKQIKLQIWDTAGQ-----------ESFRSITR   71 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCc-----------HHHHHHHH
Confidence            69999999999999999999987642211  112222221111111 12235889999992           22233333


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ...+.+|++++++|+++.-|.... +++..+.....+.  .|++++.||+|....  ..+..       ...+.+.....
T Consensus        72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~--~~~~~-------~~~~~~~~~~~  140 (168)
T cd01866          72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESR--REVSY-------EEGEAFAKEHG  140 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cCCCH-------HHHHHHHHHcC
Confidence            445678999999999854444433 3454444432222  389999999998743  22110       01112222211


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..      .+..++.++.+++++++.+.+.+.+
T Consensus       141 ~~------~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         141 LI------FMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CE------EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            11      2345667778999999888776543

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.68  E-value=5.2e-15  Score=108.86  Aligned_cols=164  Identities=18%  Similarity=0.236  Sum_probs=93.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH---h
Q 027090           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL---G   98 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~---~   98 (228)
                      |+++|++|+|||||+|.|++.............|......    .....+.++||||+......... .+++...+   .
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~-~~~~~~~~~~~~   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF----NVNDKFRLVDLPGYGYAKVSKEV-KEKWGKLIEEYL   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE----EccCeEEEecCCCccccccCHHH-HHHHHHHHHHHH
Confidence            7999999999999999999433211111111222222221    12237899999998775443211 12222222   1


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH-hcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  177 (228)
                      .....++.++++++.....+....+.++++... +    .|++++.||+|....  .+.......     +....+ ...
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~  144 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI  144 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence            233467888999998755555555555555432 2    278999999998755  444433332     322232 111


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      .     ...++.++.++.++.++++.|.++
T Consensus       145 ~-----~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         145 D-----PPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             C-----CceEEEecCCCCCHHHHHHHHHHh
Confidence            1     112244566678899999888764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01893 Miro1 Miro1 subfamily

Probab=99.68  E-value=2e-15  Score=111.46  Aligned_cols=160  Identities=14%  Similarity=0.096  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      +|+++|..|+|||||++.+.+...+..    .+.+........ .......+.++||||.....       ..+.    .
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~----~   66 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN----VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANLA----A   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc----CCCcccceEeeeeecCCeEEEEEEeCCCchhhh-------HHHh----h
Confidence            799999999999999999998765221    111111111111 11234568899999954321       1111    2


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ....+|++++++++++..|....  .|+..+..... .  .|++++.||+|+...  .........     +..+.....
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~--~~~~~~~~~-----~~~~~~~~~  136 (166)
T cd01893          67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDG--SSQAGLEEE-----MLPIMNEFR  136 (166)
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccc--cchhHHHHH-----HHHHHHHHh
Confidence            23567999999999866666653  46666655432 2  389999999998754  322110000     111111111


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ..    ...+..||.++.+++++++.+.+.+.
T Consensus       137 ~~----~~~~e~Sa~~~~~v~~lf~~~~~~~~  164 (166)
T cd01893         137 EI----ETCVECSAKTLINVSEVFYYAQKAVL  164 (166)
T ss_pred             cc----cEEEEeccccccCHHHHHHHHHHHhc
Confidence            11    12335577788999999998877653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.68  E-value=1.6e-15  Score=111.62  Aligned_cols=158  Identities=20%  Similarity=0.152  Sum_probs=91.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+|+|++|||||||++++++.....    ....|............  ...+.++||||.....           ....
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----------~~~~   66 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVD----DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS-----------AMRD   66 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCc----ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch-----------HHHH
Confidence            79999999999999999999876421    11222221111111122  2457899999954321           1122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ......++++++++++..-+.... .+...+....... ..|++++.||+|+...  ..+...       ....+.+...
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~pii~v~nK~Dl~~~--~~~~~~-------~~~~~~~~~~  136 (164)
T smart00173       67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLESE--RVVSTE-------EGKELARQWG  136 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccccc--ceEcHH-------HHHHHHHHcC
Confidence            233466999999999854444333 2333343332211 2489999999998653  222110       1122222222


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .      ..+..||.++.+++++++.+.+.+.
T Consensus       137 ~------~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      137 C------PFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             C------EEEEeecCCCCCHHHHHHHHHHHHh
Confidence            1      1245677788999999998877654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.68  E-value=5.4e-16  Score=115.23  Aligned_cols=162  Identities=20%  Similarity=0.093  Sum_probs=95.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      |+|+|+.|+|||||++.+++....    .....+...........++.  .+.++||||....           ......
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~   65 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFP----EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY-----------DRLRPL   65 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCC----CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc-----------chhchh
Confidence            589999999999999999987652    11222332222211222333  4889999994322           122223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----CchHHHH
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLKEI  172 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~  172 (228)
                      ....+|++++++++++.-|....  .|+..+.....   ..|++++.||+|+...  ......+....     .....++
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~~  140 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLRED--KSTLRELSKQKQEPVTYEQGEAL  140 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhC--hhhhhhhhcccCCCccHHHHHHH
Confidence            45678999999999866555543  35665655432   2489999999998653  22111111111     1112223


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      .+.....     ..+..|+.++.+++++++.+.+.+
T Consensus       141 ~~~~~~~-----~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      141 AKRIGAV-----KYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             HHHcCCc-----EEEEecCCCCCCHHHHHHHHHHHh
Confidence            3322210     123457788899999999877654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.68  E-value=7.2e-15  Score=113.63  Aligned_cols=179  Identities=12%  Similarity=0.063  Sum_probs=104.7

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHH
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      .+.+.....+|+++|..|+|||||++.+.+....    .....|............  ...+.++||+|-.         
T Consensus         6 ~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~----~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e---------   72 (232)
T cd04174           6 IPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYP----ETYVPTVFENYTAGLETEEQRVELSLWDTSGSP---------   72 (232)
T ss_pred             cCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCC----CCcCCceeeeeEEEEEECCEEEEEEEEeCCCch---------
Confidence            3344455679999999999999999999877542    122333322221111122  3458999999921         


Q ss_pred             HHHHHHHHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc-CC
Q 027090           90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-CP  166 (228)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~-~~  166 (228)
                        .+.......+.++|++++|+|+++.-|...  ..|+..+......   .|++||.||+|+.... ..+.+..... +.
T Consensus        73 --~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~---~piilVgNK~DL~~~~-~~~~~l~~~~~~~  146 (232)
T cd04174          73 --YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPS---TRILLIGCKTDLRTDL-STLMELSNQKQAP  146 (232)
T ss_pred             --hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCC---CCEEEEEECccccccc-chhhhhccccCCc
Confidence              222233345678899999999997777764  4577777665432   2899999999985321 1111111100 01


Q ss_pred             chHHHHHHhcCCeEEEeeCCCcccccchH-HHHHHHHHHHHHHHhc
Q 027090          167 KPLKEILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQN  211 (228)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~~~~  211 (228)
                      -...+..+.|...-+.  ..+..||.++. +++++++.+...+.++
T Consensus       147 Vs~~e~~~~a~~~~~~--~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         147 ISYEQGCALAKQLGAE--VYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCHHHHHHHHHHcCCC--EEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence            1122333333322110  01245777776 7999998887665543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.68  E-value=2.5e-15  Score=112.73  Aligned_cols=164  Identities=13%  Similarity=0.080  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|..|||||||++.+.+......   ..+...........  ......+.++||||..           .+....
T Consensus         4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~~   69 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE-----------KLRPLW   69 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCcCCc---CCccccceeEEEeeccCCCceEEEEEECCCcH-----------hHHHHH
Confidence            6899999999999999999987654211   11111111111111  1234578999999932           122223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++++|+++.-+.... .++..+...... ..+|+++++||+|....  ....+ +..     +..+.+..
T Consensus        70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~~--~~~~~-~~~-----~~~~~~~~  140 (183)
T cd04152          70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPNA--LSVSE-VEK-----LLALHELS  140 (183)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCcccc--CCHHH-HHH-----HhCccccC
Confidence            3345678999999998743333332 233333332221 12489999999998643  22221 111     00000111


Q ss_pred             CC-eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .. .+.    ....||.++.+++++++.|.+.+.+
T Consensus       141 ~~~~~~----~~~~SA~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152         141 ASTPWH----VQPACAIIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             CCCceE----EEEeecccCCCHHHHHHHHHHHHHH
Confidence            11 111    2346888889999999998877754

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04142 RRP22 RRP22 subfamily

Probab=99.68  E-value=7.2e-15  Score=111.48  Aligned_cols=173  Identities=16%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE-eeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+|+|.+|||||||++.+++.....    ....|+....+ .....++  ..+.++||||.......   ...++....
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~f~~----~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~   74 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQEFPE----EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT---AGQEWMDPR   74 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCCCc----ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence            79999999999999999999876521    12223221111 1111333  35789999997643211   112222222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhC-ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~-~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      ......+|++++|+|++++.|..... +++.+..... .....|++++.||+|+...  +.....       ...++...
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~~~  145 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLVRK  145 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHHHH
Confidence            23346789999999998666665443 4444544331 1122389999999998643  221110       11122111


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ  214 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~  214 (228)
                      ...     -+.+..||.++.+++++++.+.+.+-.+++.
T Consensus       146 ~~~-----~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         146 SWK-----CGYLECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             hcC-----CcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence            100     1224567888899999998887666665554

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04140 ARHI_like ARHI subfamily

Probab=99.67  E-value=2e-15  Score=111.31  Aligned_cols=158  Identities=19%  Similarity=0.161  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|.+|+|||||++.+++......    ...|........  .......+.++||||.....           ...
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRES----YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP-----------AMQ   66 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC----cCCcchheEEEEEEECCEEEEEEEEECCCCCcch-----------HHH
Confidence            5899999999999999999998765221    112221111111  11223458899999954321           111


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcc-ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~-~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      ......++++++|+++++.-|... ..+++.+....+.. ...|++++.||+|....  +++....       .......
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~  137 (165)
T cd04140          67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATE  137 (165)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHH
Confidence            223446799999999986666654 34556565543321 22489999999998653  3321110       1111111


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ...      ..+..||.++.+++++++.|.++
T Consensus       138 ~~~------~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         138 WNC------AFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             hCC------cEEEeecCCCCCHHHHHHHHHhc
Confidence            110      12456788889999999987654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.67  E-value=2.2e-16  Score=115.59  Aligned_cols=148  Identities=18%  Similarity=0.238  Sum_probs=88.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      ++|+++|++|+|||||+|+|+|...    ...  .+....      +...  .++||||.+...       .++...+..
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~----~~~--~~~~v~------~~~~--~~iDtpG~~~~~-------~~~~~~~~~   60 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYT----LAR--KTQAVE------FNDK--GDIDTPGEYFSH-------PRWYHALIT   60 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCc----cCc--cceEEE------ECCC--CcccCCccccCC-------HHHHHHHHH
Confidence            4799999999999999999998643    111  111111      1111  269999976432       122222223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+|+++++++++...+......+    .. ...  +|+++++||+|....   ....         +.+..+.... 
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~~~~~----~~-~~~--~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~-  120 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLPAGLL----DI-GVS--KRQIAVISKTDMPDA---DVAA---------TRKLLLETGF-  120 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccCHHHH----hc-cCC--CCeEEEEEccccCcc---cHHH---------HHHHHHHcCC-
Confidence            35678999999999855444222221    11 111  378999999997543   2222         1112211111 


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                         ..+.+..|+.++.++++|++.+.+.+...
T Consensus       121 ---~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        121 ---EEPIFELNSHDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             ---CCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence               01334467788899999999998888653

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.67  E-value=4.3e-15  Score=109.77  Aligned_cols=159  Identities=16%  Similarity=0.117  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|+|||||++.+++.......  ..+...+....... ..+  ..+.++||||..           .+....
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~D~~g~~-----------~~~~~~   69 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSF--ISTIGIDFKIRTIE-LDGKKIKLQIWDTAGQE-----------RFRTIT   69 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCcCCccc--ccCccceEEEEEEE-ECCEEEEEEEEeCCchH-----------HHHHHH
Confidence            68999999999999999999987642111  11111222111111 222  357899999922           122222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ....+.+|++++++|++++.|.... +++..+.......  .|++++.||+|+...  ..+..  +     ......+..
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~--~~~~~--~-----~~~~~~~~~  138 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEK--RVVSK--E-----EGEALADEY  138 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cCCCH--H-----HHHHHHHHc
Confidence            3344678999999999865555443 3444444432222  389999999998753  22110  0     122222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ...      .+..|+.++.++.++++.+.+.+.
T Consensus       139 ~~~------~~~~Sa~~~~~v~~~~~~i~~~~~  165 (167)
T cd01867         139 GIK------FLETSAKANINVEEAFFTLAKDIK  165 (167)
T ss_pred             CCE------EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            111      245577778899999998877654

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04109 Rab28 Rab28 subfamily

Probab=99.67  E-value=6.8e-15  Score=113.16  Aligned_cols=161  Identities=20%  Similarity=0.140  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      +|+++|.+|+|||||++.+++...    ......|.....  ......  ....+.++||||..           .....
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~~----~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l   66 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEGF----GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKM   66 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHH
Confidence            799999999999999999998764    222233433222  222211  23468999999921           12222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .......+|++++++|+++.-|.... .|+..+...... ....|+++|.||+|+...  +.+...       ....+.+
T Consensus        67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~~-------~~~~~~~  137 (215)
T cd04109          67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKDD-------KHARFAQ  137 (215)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCHH-------HHHHHHH
Confidence            33345678999999999866565544 355666555432 111268889999998643  222110       1222332


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ...-.      .+..||.++.+++++++.+.+.+...
T Consensus       138 ~~~~~------~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         138 ANGME------SCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             HcCCE------EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            22211      12357888899999999998877653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.67  E-value=9.8e-16  Score=130.72  Aligned_cols=165  Identities=18%  Similarity=0.206  Sum_probs=107.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~   97 (228)
                      ..+|+++|.+|+|||||+|+|+|.+.   .+.+.+..|.-........++..+.++|.||.++......+  +.+. +++
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q---~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D--E~Var~~l   77 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQ---KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED--EKVARDFL   77 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCc---eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch--HHHHHHHH
Confidence            35799999999999999999999875   24455444433334444466777999999999887654221  1222 222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                        ..+++|+++.|+|++ .+...    +.+...++.-.  .|+++++|++|..++  +-++--        .+.+.+...
T Consensus        78 --l~~~~D~ivnVvDAt-nLeRn----LyltlQLlE~g--~p~ilaLNm~D~A~~--~Gi~ID--------~~~L~~~LG  138 (653)
T COG0370          78 --LEGKPDLIVNVVDAT-NLERN----LYLTLQLLELG--IPMILALNMIDEAKK--RGIRID--------IEKLSKLLG  138 (653)
T ss_pred             --hcCCCCEEEEEcccc-hHHHH----HHHHHHHHHcC--CCeEEEeccHhhHHh--cCCccc--------HHHHHHHhC
Confidence              246889999999998 33332    23333332222  279999999998866  444322        223333322


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      -      +.++.+|.++.+++++++.+.+..+.+..
T Consensus       139 v------PVv~tvA~~g~G~~~l~~~i~~~~~~~~~  168 (653)
T COG0370         139 V------PVVPTVAKRGEGLEELKRAIIELAESKTT  168 (653)
T ss_pred             C------CEEEEEeecCCCHHHHHHHHHHhcccccc
Confidence            2      34556777889999999999887777554

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.67  E-value=3.3e-15  Score=112.82  Aligned_cols=117  Identities=18%  Similarity=0.235  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~   85 (228)
                      .+|+++|+.++|||||+++|++......              .......|......... .++..+.++||||+.     
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~-----   76 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHA-----   76 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHH-----
Confidence            6899999999999999999986411000              00123444444333322 355678999999953     


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                            .+...+......+|++++|+++..+....+...+..+... +.+   ++++++||+|....
T Consensus        77 ------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~  133 (195)
T cd01884          77 ------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD  133 (195)
T ss_pred             ------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc
Confidence                  2333333344578999999999877877777777766543 322   47789999998744

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04127 Rab27A Rab27a subfamily

Probab=99.67  E-value=2.5e-15  Score=112.28  Aligned_cols=162  Identities=14%  Similarity=0.085  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-----------eCCcEEEEEeCCCCCCCCCCcHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------KDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .+|+++|++|||||||++.+.+....  +....+...+........           .....+.++||||.         
T Consensus         5 ~ki~ivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------   73 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDNKFN--PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ---------   73 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh---------
Confidence            68999999999999999999887541  111112221121111111           11245889999991         


Q ss_pred             HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCc
Q 027090           89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK  167 (228)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~  167 (228)
                        +++..........+|++++++|+++.-|.... .|+..+...... ...|+++|.||+|+...  ..+..       .
T Consensus        74 --~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~v~~-------~  141 (180)
T cd04127          74 --ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC-ENPDIVLCGNKADLEDQ--RQVSE-------E  141 (180)
T ss_pred             --HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEeCccchhc--CccCH-------H
Confidence              22333334455688999999999865555543 355555443211 11379999999998653  22211       0


Q ss_pred             hHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...++.+...-      ..+..|+.++.+++++++.+.+.+.+
T Consensus       142 ~~~~~~~~~~~------~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         142 QAKALADKYGI------PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             HHHHHHHHcCC------eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            12222222211      12456778889999999988775543

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.67  E-value=7.9e-15  Score=109.75  Aligned_cols=169  Identities=15%  Similarity=0.107  Sum_probs=101.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ...+|+++|..|+|||||++.+.+....    .....|...........+  ...+.++||+|-           +++..
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~----~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~-----------e~~~~   68 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGS-----------PYYDN   68 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCC----CccCCceeeeeEEEEEECCEEEEEEEEECCCc-----------hhhHh
Confidence            3468999999999999999999877542    222333322222111122  345899999992           12233


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc-cCCchHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-ECPKPLKEI  172 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~-~~~~~~~~~  172 (228)
                      .....+.++|++++|+|++++-|....  .|+..+......   .|++||.||+|+.... ..+...... .+.-..++.
T Consensus        69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~---~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~  144 (182)
T cd04172          69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQG  144 (182)
T ss_pred             hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHHH
Confidence            334556788999999999977777763  577777665432   3899999999985320 111111110 001112233


Q ss_pred             HHhcCCeEEEeeCCCcccccchHH-HHHHHHHHHHH
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV  207 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~  207 (228)
                      .+.+...-..  .....||.++.+ +.++++.+.++
T Consensus       145 ~~~a~~~~~~--~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         145 ANMAKQIGAA--TYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             HHHHHHcCCC--EEEECCcCCCCCCHHHHHHHHHHH
Confidence            3333322110  112457888888 99999877664

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04175 Rap1 Rap1 subgroup

Probab=99.67  E-value=3.8e-15  Score=109.61  Aligned_cols=158  Identities=16%  Similarity=0.139  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|.+|||||||++.++....    ......|+..........+  ...+.++||||...           +....
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIF----VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-----------FTAMR   66 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCC----CcccCCcchheEEEEEEECCEEEEEEEEECCCccc-----------chhHH
Confidence            5899999999999999999986543    1122233322211111122  33467999999432           12222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|+++++++.+..-+.... +++..+..... ....|++++.||+|+...  ..+..       +...++.+..
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~~  136 (164)
T cd04175          67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE--RVVGK-------EQGQNLARQW  136 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc--cEEcH-------HHHHHHHHHh
Confidence            2334567999999998755554443 34444443322 122389999999998643  22111       0112222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ...      .+..+|.++.+++++++.+.+.+
T Consensus       137 ~~~------~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         137 GCA------FLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             CCE------EEEeeCCCCCCHHHHHHHHHHHh
Confidence            211      23557778899999999887654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.67  E-value=2e-15  Score=110.16  Aligned_cols=156  Identities=19%  Similarity=0.223  Sum_probs=90.4

Q ss_pred             EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCC
Q 027090           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG  103 (228)
Q Consensus        24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (228)
                      |+|.+|+|||||+|++++..... +. ....|......... .++..+.++||||..+.......  ..+....... +.
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~-~~-~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKV-GN-WPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYSED--EKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccc-cC-CCCcccccceEEEe-eCCeEEEEEECCCccccCCCChh--HHHHHHHhcC-CC
Confidence            58999999999999999976321 11 12223333222222 44567899999998765432111  1222211111 58


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEe
Q 027090          104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF  183 (228)
Q Consensus       104 ~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
                      +|++++++|+.. ... ...++..+..   ..  +|+++++||+|....  ..+.....        .+......     
T Consensus        75 ~d~vi~v~d~~~-~~~-~~~~~~~~~~---~~--~~~iiv~NK~Dl~~~--~~~~~~~~--------~~~~~~~~-----  132 (158)
T cd01879          75 PDLIVNVVDATN-LER-NLYLTLQLLE---LG--LPVVVALNMIDEAEK--RGIKIDLD--------KLSELLGV-----  132 (158)
T ss_pred             CcEEEEEeeCCc-chh-HHHHHHHHHH---cC--CCEEEEEehhhhccc--ccchhhHH--------HHHHhhCC-----
Confidence            899999999973 222 2222222222   12  389999999998754  33322111        22222221     


Q ss_pred             eCCCcccccchHHHHHHHHHHHHHH
Q 027090          184 DNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       184 ~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                       ..+..++.++.+++++++.+.+++
T Consensus       133 -~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         133 -PVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             -CeEEEEccCCCCHHHHHHHHHHHh
Confidence             234456777889999999887764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04157 Arl6 Arl6 subfamily

Probab=99.67  E-value=2.1e-15  Score=110.60  Aligned_cols=156  Identities=14%  Similarity=0.068  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|++|||||||++.|++...+...   ...|........ ......+.++||||...           +.......
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~~~t~g~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQI---IVPTVGFNVESF-EKGNLSFTAFDMSGQGK-----------YRGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcce---ecCccccceEEE-EECCEEEEEEECCCCHh-----------hHHHHHHH
Confidence            4899999999999999999986432111   122222211111 24566789999999432           22223334


Q ss_pred             cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC-ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc--
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC--  176 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~-~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  176 (228)
                      ...+|++++++|.+...+.... .++..+..... .....|+++++||+|....  ........         .....  
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~---------~l~~~~~  134 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQ---------LLGLENI  134 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHH---------HhCCccc
Confidence            4678999999999855544332 34444433210 0112489999999998654  22222111         11111  


Q ss_pred             -CCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       177 -~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                       ...+    ..+..||.++.++++++++|.+
T Consensus       135 ~~~~~----~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         135 KDKPW----HIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             cCceE----EEEEeeCCCCCchHHHHHHHhc
Confidence             1111    1234578888999999998753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01875 RhoG RhoG subfamily

Probab=99.67  E-value=8.2e-15  Score=110.66  Aligned_cols=169  Identities=15%  Similarity=0.066  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|..|+|||||++.+......    .....|...........++  ..+.++||+|-.           .+....
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e-----------~~~~l~   68 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAFP----KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE-----------EYDRLR   68 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCC----cCCCCceEeeeEEEEEECCEEEEEEEEECCCch-----------hhhhhh
Confidence            68999999999999999999876541    2223343322221111222  458899999922           222233


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC--CchHHHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC--PKPLKEIL  173 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~--~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~--~~~~~~~~  173 (228)
                      ...++.+|++++|++++++-|.....  |+..+......   .|++||.||.|+...  ....+.+....  .....+..
T Consensus        69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~---~piilvgNK~DL~~~--~~~~~~~~~~~~~~v~~~~~~  143 (191)
T cd01875          69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPN---VPILLVGTKKDLRND--ADTLKKLKEQGQAPITPQQGG  143 (191)
T ss_pred             hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEEeChhhhcC--hhhHHHHhhccCCCCCHHHHH
Confidence            34567889999999998777766653  55555443322   389999999998643  32222221111  11122222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.+.....  ......||.++.++.++++.+.+.+..
T Consensus       144 ~~a~~~~~--~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         144 ALAKQIHA--VKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             HHHHHcCC--cEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            33321110  011245677889999999988776654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01850 CDC_Septin CDC/Septin

Probab=99.66  E-value=1.1e-14  Score=115.60  Aligned_cols=145  Identities=23%  Similarity=0.310  Sum_probs=90.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCC------CCCcceeeEeEeee-eeCC--cEEEEEeCCCCCCCCCCcHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~-~~~~--~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      ..+|+|+|++|+|||||+|+|++.........      ....|......... ..++  ..+.++||||+++.......+
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            46899999999999999999999876433210      12334333322221 1233  358999999998875432222


Q ss_pred             HHHHHH--------HHh----------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090           90 GKEIVK--------CLG----------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (228)
Q Consensus        90 ~~~~~~--------~~~----------~~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~  150 (228)
                       +.+..        ++.          ....++|+++++++.. .+++..+.+.++.+..    .  .|+++|+||+|..
T Consensus        84 -~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~--v~vi~VinK~D~l  156 (276)
T cd01850          84 -KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----R--VNIIPVIAKADTL  156 (276)
T ss_pred             -HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----c--CCEEEEEECCCcC
Confidence             22221        110          1123689999999886 3677777776666643    2  2799999999998


Q ss_pred             ccchhhHHHHhhccCCchHHHHHHhcC
Q 027090          151 EDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ..  .++....+.     +.+.++..+
T Consensus       157 ~~--~e~~~~k~~-----i~~~l~~~~  176 (276)
T cd01850         157 TP--EELKEFKQR-----IMEDIEEHN  176 (276)
T ss_pred             CH--HHHHHHHHH-----HHHHHHHcC
Confidence            75  555554444     444444444

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.66  E-value=1.4e-14  Score=106.37  Aligned_cols=160  Identities=19%  Similarity=0.179  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|+|||||++.+++.....  ......+.+....... ..+  ..+.++|+||..           .+....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~-----------~~~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSE--QYKSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQE-----------RFRSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence            379999999999999999999876511  1111222222222222 233  357899999921           222233


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++++++.+.-+.... +++..+.......  .|++++.||+|....  ..+..       +...++.+..
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~--~~~~~-------~~~~~~~~~~  135 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQ--RQVSR-------EEAEAFAEEH  135 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcccc--cCCCH-------HHHHHHHHHc
Confidence            3344678999999999854454443 3555544443222  389999999997653  21110       0122222322


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...      .+..++.++.+++++++.|.+.+.+
T Consensus       136 ~~~------~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      136 GLP------FFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             CCe------EEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            211      2345666778999999999887755

Rab GTPases are implicated in vesicle trafficking.

>cd04154 Arl2 Arl2 subfamily

Probab=99.66  E-value=3.6e-15  Score=110.83  Aligned_cols=158  Identities=16%  Similarity=0.146  Sum_probs=91.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .....+|+++|++|+|||||+++|++....  .   ...|......... .+...+.++||||...           +..
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~---~~~t~g~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~   73 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDID--T---ISPTLGFQIKTLE-YEGYKLNIWDVGGQKT-----------LRP   73 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCC--C---cCCccccceEEEE-ECCEEEEEEECCCCHH-----------HHH
Confidence            344578999999999999999999987431  1   1222222222222 3466789999999321           122


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .........|++++|+|++.+-+.... .++..+..... ....|+++++||+|....  ....+         +.+..+
T Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~--~~~~~---------~~~~~~  141 (173)
T cd04154          74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEER-LAGATLLILANKQDLPGA--LSEEE---------IREALE  141 (173)
T ss_pred             HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcccccC--CCHHH---------HHHHhC
Confidence            223345678999999999854344332 23332221111 112489999999998654  22221         111111


Q ss_pred             hc--CCeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090          175 LC--DNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       175 ~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                      ..  ....+   ..+..||.++.+++++++.+.
T Consensus       142 ~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         142 LDKISSHHW---RIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             ccccCCCce---EEEeccCCCCcCHHHHHHHHh
Confidence            10  11111   234568888899999998764

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04113 Rab4 Rab4 subfamily

Probab=99.66  E-value=1.4e-15  Score=111.48  Aligned_cols=156  Identities=19%  Similarity=0.125  Sum_probs=91.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      +|+|+|++|+|||||++.|++.......  ....+.+........ .....+.++||||..           .+......
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-----------~~~~~~~~   68 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKFKEDS--QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE-----------RFRSVTRS   68 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEECcchH-----------HHHHhHHH
Confidence            7999999999999999999987642111  112222222121121 122457899999932           22222233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      ....+|++++++++++..+.... .++..+.......  .|++++.||+|....  ..+..       .....+......
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~--~~~~~-------~~~~~~~~~~~~  137 (161)
T cd04113          69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQ--REVTF-------LEASRFAQENGL  137 (161)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchh--ccCCH-------HHHHHHHHHcCC
Confidence            44578999999999866555543 4555555443323  389999999998643  22110       011222222221


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                            ..+..|+.++.++.++++.+.+
T Consensus       138 ------~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         138 ------LFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             ------EEEEEECCCCCCHHHHHHHHHH
Confidence                  1234466777899999987764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.66  E-value=1.8e-15  Score=110.18  Aligned_cols=156  Identities=17%  Similarity=0.145  Sum_probs=87.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 027090           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (228)
                      |+|+|++|||||||+|+|++....    .....|......... .....+.++|+||...           +........
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFS----EDTIPTVGFNMRKVT-KGNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCC----cCccCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            799999999999999999998652    112223222222222 3446789999999422           222233334


Q ss_pred             CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090          102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (228)
Q Consensus       102 ~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
                      ..+|+++++++++...+.... .++..+..... ...+|+++++||+|....  ............   .   ......+
T Consensus        66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~---~---~~~~~~~  136 (159)
T cd04159          66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA--LSVDELIEQMNL---K---SITDREV  136 (159)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC--cCHHHHHHHhCc---c---cccCCce
Confidence            577999999998743222221 22222221111 112389999999998755  433332222000   0   0001111


Q ss_pred             EEeeCCCcccccchHHHHHHHHHHHH
Q 027090          181 VLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                          .....++.++.+++++++.|.+
T Consensus       137 ----~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         137 ----SCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             ----EEEEEEeccCCChHHHHHHHhh
Confidence                1234567788999999988754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01861 Rab6 Rab6 subfamily

Probab=99.66  E-value=7.7e-15  Score=107.52  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=91.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+++|+.|||||||++++++......  .....+.+....... ..+  ..+.++||||..           .+.....
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~-----------~~~~~~~   67 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMY-LEDKTVRLQLWDTAGQE-----------RFRSLIP   67 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHHHH
Confidence            799999999999999999998865221  111222222111111 223  358899999921           2222333


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHHhc
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  176 (228)
                      .....+|+++++++++++-|.... .++..+....+.  ..|++++.||+|....  ... .+.        .....+..
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~--~~~~~~~--------~~~~~~~~  135 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDK--RQVSTEE--------GEKKAKEL  135 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcccc--CccCHHH--------HHHHHHHh
Confidence            345677999999999855444443 344444333222  2389999999998543  221 111        11222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ...      .+..++.++.+++++++.+.+.
T Consensus       136 ~~~------~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         136 NAM------FIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             CCE------EEEEeCCCCCCHHHHHHHHHHh
Confidence            211      2335667778999999988764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.66  E-value=3.6e-15  Score=109.69  Aligned_cols=158  Identities=15%  Similarity=0.097  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeee--eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .+|+++|++|||||||++++.......  ......|.....  ....  ......+.++||||.           +.+..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~~   67 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVF--PKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ-----------ELYSD   67 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCc--CccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH-----------HHHHH
Confidence            379999999999999999998542100  122233332211  1111  123356899999992           22223


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........+|++++++|+++.-+.... .+++.+.....   ..|+++|.||+|....  .++....       .+....
T Consensus        68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~~  135 (164)
T cd04101          68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASK---HMPGVLVGNKMDLADK--AEVTDAQ-------AQAFAQ  135 (164)
T ss_pred             HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cCCCHHH-------HHHHHH
Confidence            334455688999999999855444433 45555544321   2389999999998654  3222111       111111


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ....      ..+..|+.++.++.++++.+.+.+
T Consensus       136 ~~~~------~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         136 ANQL------KFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             HcCC------eEEEEeCCCCCChHHHHHHHHHHh
Confidence            1111      123457778899999998887653

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.66  E-value=1.7e-15  Score=112.59  Aligned_cols=164  Identities=16%  Similarity=0.084  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|++|||||||++.+.+.....    ....|............  ...+.++||||...           +....
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPE----VYVPTVFENYVADIEVDGKQVELALWDTAGQED-----------YDRLR   66 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCC----CCCCccccceEEEEEECCEEEEEEEEeCCCchh-----------hhhcc
Confidence            589999999999999999999865421    12222222211111122  23578999999432           11222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC--Cc---hHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC--PK---PLK  170 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~--~~---~~~  170 (228)
                      .......|++++++++++.-|....  .++..+.....   ..|++++.||+|+...  ......+....  ..   ..+
T Consensus        67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~~  141 (175)
T cd01870          67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEGR  141 (175)
T ss_pred             ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHHH
Confidence            2344678999999999855444433  24454444322   2389999999998654  33322222111  11   122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ++.+.....     ..+..||.++.+++++++.+.+.+
T Consensus       142 ~~~~~~~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         142 DMANKIGAF-----GYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             HHHHHcCCc-----EEEEeccccCcCHHHHHHHHHHHh
Confidence            222222211     123457778899999999887543

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01889 SelB_euk SelB subfamily

Probab=99.66  E-value=2.3e-15  Score=113.74  Aligned_cols=169  Identities=17%  Similarity=0.191  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc---cccc--CCCCCcceeeEeEeeee-------------eCCcEEEEEeCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKA---FKAS--AGSSGVTKTCEMKTTVL-------------KDGQVVNVIDTPGLFD   81 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~---~~~~--~~~~~~t~~~~~~~~~~-------------~~~~~~~~iDtpG~~~   81 (228)
                      .+|+++|+.|+|||||+++|++...   ....  ......|..........             .....+.++||||.. 
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence            3799999999999999999987310   0000  00112232222211111             125578999999952 


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~  161 (228)
                                .+.+.+......+|++++|+|+....+......+..... .  .  .|+++++||+|....  ......+
T Consensus        80 ----------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~--~--~~~iiv~NK~Dl~~~--~~~~~~~  142 (192)
T cd01889          80 ----------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-L--C--KKLIVVLNKIDLIPE--EERERKI  142 (192)
T ss_pred             ----------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-c--C--CCEEEEEECcccCCH--HHHHHHH
Confidence                      122222223346799999999986665555444333322 2  1  279999999998754  4333333


Q ss_pred             hccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.. ...+.........   ..-..++.|+.++.++++|++.+.+.++.
T Consensus       143 ~~~-~~~l~~~~~~~~~---~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         143 EKM-KKKLQKTLEKTRF---KNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHH-HHHHHHHHHhcCc---CCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            320 0001111111110   01123556888889999999999887765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.66  E-value=1.9e-15  Score=115.01  Aligned_cols=162  Identities=13%  Similarity=0.036  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeee--eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      +|+|+|++|+|||||++.+++....    .....|..  ........  .....+.++||||..           .+...
T Consensus         2 KivivG~~~vGKTsli~~l~~~~~~----~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~-----------~~~~~   66 (201)
T cd04107           2 KVLVIGDLGVGKTSIIKRYVHGIFS----QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE-----------RFGGM   66 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC----CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch-----------hhhhh
Confidence            7999999999999999999987541    12223332  21122221  123458999999942           12222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .....+.++++++++|++.+-|..... |+..+......  ....|++||.||+|+...  ..+.       .+.+.++.
T Consensus        67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~-------~~~~~~~~  137 (201)
T cd04107          67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKD-------GEQMDQFC  137 (201)
T ss_pred             HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccC-------HHHHHHHH
Confidence            334456889999999998665655543 44444433211  122389999999998632  1110       01122233


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +....     ...+..|+.++.+++++++.+.+.+...
T Consensus       138 ~~~~~-----~~~~e~Sak~~~~v~e~f~~l~~~l~~~  170 (201)
T cd04107         138 KENGF-----IGWFETSAKEGINIEEAMRFLVKNILAN  170 (201)
T ss_pred             HHcCC-----ceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            22221     1123457778899999999888776654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.66  E-value=2.7e-15  Score=110.22  Aligned_cols=159  Identities=21%  Similarity=0.152  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .+|+++|++|+|||||+|++++.......  ............... .....+.++|+||..           ++.....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~-----------~~~~~~~   68 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQ--ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE-----------RYRSLAP   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCchH-----------HHHHHHH
Confidence            58999999999999999999988752211  111111111111111 123357899999921           1222223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ......|+++++++++..-+.... .++..+.......  .|++++.||+|...........         ...+.....
T Consensus        69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~  137 (163)
T cd01860          69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLESKRQVSTEE---------AQEYADENG  137 (163)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccCcCCHHH---------HHHHHHHcC
Confidence            344577999999999744444433 3455555543222  3788999999976330011111         112222222


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      .      ..+..|+.++.++.++++.+.+.+
T Consensus       138 ~------~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         138 L------LFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             C------EEEEEECCCCCCHHHHHHHHHHHh
Confidence            1      234557777899999999887654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.66  E-value=6.7e-15  Score=131.11  Aligned_cols=163  Identities=19%  Similarity=0.140  Sum_probs=106.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+|+|++|+|||||+|.|++...  ......+.++.........+.+..+.++||||+.....   .+...+.....
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~  349 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE---GIDSAIASQAQ  349 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc---cHHHHHHHHHH
Confidence            35899999999999999999998753  11222222333333333345677899999999864221   12233444444


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      .....+|++++|+|+..+++..+..+.+.+..     ..+|+++|+||+|....  ....           .+.... . 
T Consensus       350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~--~~~~-----------~~~~~l-g-  409 (712)
T PRK09518        350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRR-----AGKPVVLAVNKIDDQAS--EYDA-----------AEFWKL-G-  409 (712)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECcccccc--hhhH-----------HHHHHc-C-
Confidence            45567899999999987788777766666643     12489999999997543  2111           111111 0 


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                          +...++.||.++.++.+|++.|.+.+++
T Consensus       410 ----~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        410 ----LGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             ----CCCeEEEECCCCCCchHHHHHHHHhccc
Confidence                1112356888899999999999888765

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.65  E-value=7.8e-15  Score=113.07  Aligned_cols=160  Identities=13%  Similarity=0.008  Sum_probs=98.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--eee-eCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      ....+|+++|..|||||||++.++.....    .....|.......  ... .....+.++||||...           +
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~----~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~   75 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F   75 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCC----CccCCccceeEEEEEEEECCeEEEEEEEECCCchh-----------h
Confidence            55589999999999999999998765441    1222333222221  111 1234689999999432           1


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      .......+...+++++|+|.+++.|.... .|++.+.....+   .|++||.||+|+...  ....+.        + .+
T Consensus        76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~---~piilvgNK~Dl~~~--~v~~~~--------~-~~  141 (219)
T PLN03071         76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNKVDVKNR--QVKAKQ--------V-TF  141 (219)
T ss_pred             hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CcEEEEEEchhhhhc--cCCHHH--------H-HH
Confidence            22222345678999999999976666554 466666554322   389999999998543  211111        1 11


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .+.....      ....||.++.++.++++.|.+.+.+.
T Consensus       142 ~~~~~~~------~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        142 HRKKNLQ------YYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             HHhcCCE------EEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            1111111      13457888899999999888777653

>cd04155 Arl3 Arl3 subfamily

Probab=99.65  E-value=4.9e-15  Score=109.95  Aligned_cols=160  Identities=18%  Similarity=0.126  Sum_probs=91.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+..+|+|+|++|||||||+++|++......     ..|......... ..+..+.++|+||..           .+...
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~-~~~~~~~~~D~~G~~-----------~~~~~   74 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQ-SDGFKLNVWDIGGQR-----------AIRPY   74 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEE-ECCEEEEEEECCCCH-----------HHHHH
Confidence            3457999999999999999999998754211     111111112222 346678999999932           12222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      +......++++++++|+.+.-+... ..++..+..... ....|+++++||+|....  .....+.+...      +...
T Consensus        75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~--~~~~~i~~~l~------~~~~  145 (173)
T cd04155          75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA--APAEEIAEALN------LHDL  145 (173)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC--CCHHHHHHHcC------Cccc
Confidence            3333457799999999974322222 122222221111 112389999999998654  43443333210      1111


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ....+..    ...|+.++.++++++++|.+
T Consensus       146 ~~~~~~~----~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         146 RDRTWHI----QACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCeEEE----EEeECCCCCCHHHHHHHHhc
Confidence            1111111    24578888999999998754

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04133 Rop_like Rop subfamily

Probab=99.65  E-value=6.5e-15  Score=109.59  Aligned_cols=164  Identities=18%  Similarity=0.106  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+++++|..|+|||||+..+.....    ......|...........+  ...+.++||+|-..           +....
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f----~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~-----------~~~~~   66 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKF----PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQED-----------YNRLR   66 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCC----CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcc-----------ccccc
Confidence            4799999999999999999997665    2222333322221111122  34589999999432           22223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHH--HH-hhccCCchHHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE--DF-LGHECPKPLKEI  172 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~--~~-~~~~~~~~~~~~  172 (228)
                      ......++++++|+|++++-|....  .|+..+.....+   .|++||.||+|+...  ....  +. .+.........+
T Consensus        67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~---~piilvgnK~Dl~~~--~~~~~~~~~~~~v~~~~~~~~  141 (176)
T cd04133          67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPN---VPIVLVGTKLDLRDD--KQYLADHPGASPITTAQGEEL  141 (176)
T ss_pred             hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeChhhccC--hhhhhhccCCCCCCHHHHHHH
Confidence            3355688999999999988888774  477777654332   389999999998643  2100  00 000001112223


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      .+.....     ..+..||.++.+++++++.+.+.+
T Consensus       142 a~~~~~~-----~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         142 RKQIGAA-----AYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             HHHcCCC-----EEEECCCCcccCHHHHHHHHHHHH
Confidence            3222110     123457888899999999888765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04135 Tc10 TC10 subfamily

Probab=99.65  E-value=1.7e-15  Score=112.52  Aligned_cols=162  Identities=17%  Similarity=0.062  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+++|++|+|||||++.+.+....    .....|............+  ..+.++||||.....           ....
T Consensus         2 ki~i~G~~~~GKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~   66 (174)
T cd04135           2 KCVVVGDGAVGKTCLLMSYANDAFP----EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-----------RLRP   66 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------cccc
Confidence            7999999999999999999877642    1122232222111111233  347899999954321           1122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCC-----chHHH
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPLKE  171 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~-----~~~~~  171 (228)
                      ......|+++++++..++-+....  .++..+... ..  ..|++++.||+|+...  ......+.....     .....
T Consensus        67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~~  141 (174)
T cd04135          67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQGQK  141 (174)
T ss_pred             ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHHHH
Confidence            345678999999999865555444  355555543 22  2389999999998644  222222211111     11222


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      +.+.....     .....||.++.+++++++.+.+.
T Consensus       142 ~~~~~~~~-----~~~e~Sa~~~~gi~~~f~~~~~~  172 (174)
T cd04135         142 LAKEIGAH-----CYVECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             HHHHcCCC-----EEEEecCCcCCCHHHHHHHHHHH
Confidence            22222211     11245778889999999877654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.65  E-value=9.3e-15  Score=122.99  Aligned_cols=124  Identities=15%  Similarity=0.139  Sum_probs=79.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+.+|+|+|++|+|||||+|+|++....  .+...+.|+..........++..+.++||||+.+.....+   +.-...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~a--ivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie---~~gi~~  275 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRA--IVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVE---RLGIEK  275 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHH---HHHHHH
Confidence            45679999999999999999999987531  1223344443333333335677889999999865421111   111111


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~  151 (228)
                      .....+.+|++++|+|++.+.+..+. ++..+..   ..  +|+++|+||+|+..
T Consensus       276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~  324 (442)
T TIGR00450       276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKI  324 (442)
T ss_pred             HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCC
Confidence            12234578999999999877776654 4333321   12  38999999999853

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04131 Rnd Rnd subfamily

Probab=99.65  E-value=1.9e-14  Score=107.35  Aligned_cols=167  Identities=14%  Similarity=0.077  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|.+|+|||||++.+.+...+    .....|...........+  ...+.++||+|-.           .+....
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~-----------~~~~~~   66 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYP----ETYVPTVFENYTASFEIDEQRIELSLWDTSGSP-----------YYDNVR   66 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCC----CCcCCceEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhcc
Confidence            47999999999999999999987652    122333322221111122  3458899999921           222223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc-cCCchHHHHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-ECPKPLKEILQ  174 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~  174 (228)
                      ....+.+|++++|+|++++-|...  ..|+..+......   .|++||.||+|+.... ....+.-.. .+.-...+..+
T Consensus        67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~---~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~~  142 (178)
T cd04131          67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPN---TKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGCA  142 (178)
T ss_pred             hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCC---CCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHHH
Confidence            345678899999999997778776  3577777665433   3899999999985421 111111100 00011222333


Q ss_pred             hcCCeEEEeeCCCcccccchHH-HHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV  207 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~  207 (228)
                      .+...-..  ..+..||.++.+ +++++..+.++
T Consensus       143 ~a~~~~~~--~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         143 IAKQLGAE--IYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             HHHHhCCC--EEEECccCcCCcCHHHHHHHHHHH
Confidence            33221110  113457777785 99999877664

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.65  E-value=3.6e-15  Score=115.76  Aligned_cols=190  Identities=17%  Similarity=0.167  Sum_probs=119.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHH-HHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-VGKEIV   94 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~-~~~~~~   94 (228)
                      ..+...|+|+|.+++|||||.|.+.|..+  +.++...-|+..+...+-...+..+.++||||+-........ ....+.
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            35567899999999999999999999987  555566778887777766666777999999998765432221 111111


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH----
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK----  170 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~----  170 (228)
                      .....+...+|+++.++|+...-..-..+.|..+.... .-   |-++|+||+|..... +-+.+....+.+..+.    
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-~i---ps~lvmnkid~~k~k-~~Ll~l~~~Lt~g~l~~~kl  221 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS-KI---PSILVMNKIDKLKQK-RLLLNLKDLLTNGELAKLKL  221 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh-cC---Cceeeccchhcchhh-hHHhhhHHhccccccchhhh
Confidence            12233456789999999997322222233444444432 12   689999999988651 2333333333222211    


Q ss_pred             HH-HHhcCCe----------EEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          171 EI-LQLCDNR----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       171 ~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      ++ .++.+..          |--|...+..||.++.++++|.+++....++..
T Consensus       222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence            11 1111111          222334556788899999999999999888743

>cd04149 Arf6 Arf6 subfamily

Probab=99.65  E-value=9.9e-15  Score=107.97  Aligned_cols=157  Identities=16%  Similarity=0.155  Sum_probs=90.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +..+|+++|..|+|||||++.|.......     ...|......... .....+.++||||..           .+....
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-----~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~-----------~~~~~~   70 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVT-YKNVKFNVWDVGGQD-----------KIRPLW   70 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-----ccCCcccceEEEE-ECCEEEEEEECCCCH-----------HHHHHH
Confidence            34799999999999999999998654311     1122222222222 355679999999942           122223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHHHHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ......+|++++|+|+++..+..+..  ..+...+...  ...|++|++||+|+.... .+++...+..         .+
T Consensus        71 ~~~~~~a~~ii~v~D~t~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~~  139 (168)
T cd04149          71 RHYYTGTQGLIFVVDSADRDRIDEAR--QELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL---------TR  139 (168)
T ss_pred             HHHhccCCEEEEEEeCCchhhHHHHH--HHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC---------Cc
Confidence            33456789999999998654444332  2222222211  123899999999986430 0122221110         01


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      .....+.    ....||.++.+++++++.|.+
T Consensus       140 ~~~~~~~----~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         140 IRDRNWY----VQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             cCCCcEE----EEEeeCCCCCChHHHHHHHhc
Confidence            1111121    234688889999999988753

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.65  E-value=5.6e-15  Score=131.47  Aligned_cols=164  Identities=14%  Similarity=0.126  Sum_probs=96.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcH--HHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~~~   96 (228)
                      ..+|+++|.+|||||||+|+|+|....   +.+...++..........++..+.++||||.++......  ...+.+.+.
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~---vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR---VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc---cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            368999999999999999999998652   223333333222222335667899999999987653211  111222221


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      . .....+|++++|+|+++ +.... .+...+..   ..  .|+++++||+|..+.  +.+...++        ++.+..
T Consensus        80 ~-l~~~~aD~vI~VvDat~-ler~l-~l~~ql~e---~g--iPvIvVlNK~Dl~~~--~~i~id~~--------~L~~~L  141 (772)
T PRK09554         80 Y-ILSGDADLLINVVDASN-LERNL-YLTLQLLE---LG--IPCIVALNMLDIAEK--QNIRIDID--------ALSARL  141 (772)
T ss_pred             H-HhccCCCEEEEEecCCc-chhhH-HHHHHHHH---cC--CCEEEEEEchhhhhc--cCcHHHHH--------HHHHHh
Confidence            1 12357899999999973 32221 12222222   12  389999999998754  33332222        222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      +.      +.++.++.++.+++++.+.+.+..+
T Consensus       142 G~------pVvpiSA~~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        142 GC------PVIPLVSTRGRGIEALKLAIDRHQA  168 (772)
T ss_pred             CC------CEEEEEeecCCCHHHHHHHHHHhhh
Confidence            21      2334566667788888888777654

>cd04123 Rab21 Rab21 subfamily

Probab=99.65  E-value=1.3e-14  Score=106.18  Aligned_cols=157  Identities=17%  Similarity=0.126  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      +|+++|+.|+|||||+|.+++.......  ....+.......... .....+.++|+||-.           .+......
T Consensus         2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~~~~~~   68 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQE-----------RYHALGPI   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchH-----------HHHHhhHH
Confidence            7999999999999999999987652111  111111111111111 122358899999921           12222223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHH-HHhhccCCchHHHHHHhcC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQLCD  177 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  177 (228)
                      ....+|+++++++.++.-+.... .+++.+.......  .|+++++||+|....  ..+. ..        +.++.+...
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~D~~~~--~~~~~~~--------~~~~~~~~~  136 (162)
T cd04123          69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNN--ISLVIVGNKIDLERQ--RVVSKSE--------AEEYAKSVG  136 (162)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHHH--------HHHHHHHcC
Confidence            34578999999999855444433 3444444443332  389999999998743  2221 11        122222222


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ..+      +..++.++.+++++++.+.+.+
T Consensus       137 ~~~------~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         137 AKH------FETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             CEE------EEEeCCCCCCHHHHHHHHHHHh
Confidence            122      2446677789999999887653

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.65  E-value=3.4e-15  Score=110.27  Aligned_cols=155  Identities=16%  Similarity=0.080  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee---eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+++|+.|||||||++.++....    ......|.........   ......+.++||||.....           ...
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG-----------GLR   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc-----------ccc
Confidence            799999999999999999986543    1122333322222211   1123458999999953321           111


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|+|.++.-|.... .++..+.....   ..|++++.||+|+...  . ....        ..+..+..
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~-~~~~--------~~~~~~~~  132 (166)
T cd00877          67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--K-VKAK--------QITFHRKK  132 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--c-CCHH--------HHHHHHHc
Confidence            2234577999999999866555543 35566655443   2389999999998633  2 1110        11111111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .      ...+..||.++.+++++++.|.+.+.+
T Consensus       133 ~------~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         133 N------LQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             C------CEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            1      112345778889999999999877765

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04117 Rab15 Rab15 subfamily

Probab=99.65  E-value=1.1e-14  Score=106.86  Aligned_cols=154  Identities=14%  Similarity=0.146  Sum_probs=92.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--EeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      +|+++|++|+|||||++.+++....    .....|.....  .... ..+  ..+.++||||..           .+...
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~-----------~~~~~   65 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFH----SSHISTIGVDFKMKTIE-VDGIKVRIQIWDTAGQE-----------RYQTI   65 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------hHHhh
Confidence            7999999999999999999877652    11222322221  1222 222  357899999932           12222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++++|++++-|.... .+++.+.......  .|++++.||.|+...  +.+...       ....+.+.
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~~-------~~~~~~~~  134 (161)
T cd04117          66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQK--RQVGDE-------QGNKLAKE  134 (161)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHH-------HHHHHHHH
Confidence            33345678999999999866565554 3555554443222  379999999998654  332210       01222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ....+      ...||.++.+++++++.|.+.
T Consensus       135 ~~~~~------~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         135 YGMDF------FETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             cCCEE------EEEeCCCCCCHHHHHHHHHhh
Confidence            22111      345677788999999887653

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.65  E-value=1.7e-15  Score=106.98  Aligned_cols=141  Identities=20%  Similarity=0.224  Sum_probs=87.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      ++|+|+|+.|||||||+++|.|...    ....++.  ..+.      +   .+|||||-+-..       ..+..++-.
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~----~~~KTq~--i~~~------~---~~IDTPGEyiE~-------~~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI----RYKKTQA--IEYY------D---NTIDTPGEYIEN-------PRFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC----CcCccce--eEec------c---cEEECChhheeC-------HHHHHHHHH
Confidence            6899999999999999999998764    2222222  1111      1   369999965432       345555555


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+|.++++.+++...+.--...    ...+.    +|++-|+||+|..... +.++...+         .++.+...
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP~f----a~~f~----~pvIGVITK~Dl~~~~-~~i~~a~~---------~L~~aG~~  121 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPPGF----ASMFN----KPVIGVITKIDLPSDD-ANIERAKK---------WLKNAGVK  121 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCchh----hcccC----CCEEEEEECccCccch-hhHHHHHH---------HHHHcCCC
Confidence            5568899999999984322211111    12232    2799999999998321 44443222         23333221


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                           .....|+.+++++++|.++|.
T Consensus       122 -----~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  122 -----EIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             -----CeEEEECCCCcCHHHHHHHHh
Confidence                 223446667799999999875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.64  E-value=2.2e-14  Score=107.42  Aligned_cols=160  Identities=14%  Similarity=0.113  Sum_probs=95.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ++..+|+++|..|||||||++.+.......     ...|........ ......+.++|+||-           ..+...
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-----~~pt~g~~~~~~-~~~~~~~~i~D~~Gq-----------~~~~~~   77 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETV-EYKNISFTVWDVGGQ-----------DKIRPL   77 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-----ccCCcceeEEEE-EECCEEEEEEECCCC-----------HHHHHH
Confidence            345799999999999999999997654321     122322222222 245667999999992           122223


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ....+.++|++++|+|+++.-+..+..  ..+...+...  ...|++|+.||.|....  ....+..+.         ..
T Consensus        78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~--~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~---------l~  144 (181)
T PLN00223         78 WRHYFQNTQGLIFVVDSNDRDRVVEAR--DELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDK---------LG  144 (181)
T ss_pred             HHHHhccCCEEEEEEeCCcHHHHHHHH--HHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHH---------hC
Confidence            334456789999999998544443322  2222222211  12389999999998654  333222221         11


Q ss_pred             hc---CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..   .+.+.+    ...||.+++++.+++++|.+.+..
T Consensus       145 l~~~~~~~~~~----~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        145 LHSLRQRHWYI----QSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             ccccCCCceEE----EeccCCCCCCHHHHHHHHHHHHhh
Confidence            11   111211    234778889999999998776543

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.64  E-value=1.4e-14  Score=107.94  Aligned_cols=161  Identities=14%  Similarity=0.095  Sum_probs=91.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +..+|+++|..|+|||||++.+.......     ...|+........ .....+.++||||...           +....
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~   74 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVT-YKNISFTVWDVGGQDK-----------IRPLW   74 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHH
Confidence            34799999999999999999996443211     1223332222222 3566789999999432           22223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|+|.+++-+.... .++..+..... ....|++|+.||+|+...  ....++.+.     + .+....
T Consensus        75 ~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~-~~~~~~  145 (175)
T smart00177       75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE-LRDAVILVFANKQDLPDA--MKAAEITEK-----L-GLHSIR  145 (175)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHh-hcCCcEEEEEeCcCcccC--CCHHHHHHH-----h-CccccC
Confidence            3345678999999999854333332 23332221100 012389999999998643  222221111     0 000111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ...+.    ....||.++.++++++++|.+.+
T Consensus       146 ~~~~~----~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      146 DRNWY----IQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             CCcEE----EEEeeCCCCCCHHHHHHHHHHHh
Confidence            11111    12357788899999999987654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.64  E-value=1.1e-14  Score=106.82  Aligned_cols=159  Identities=19%  Similarity=0.158  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|+|||||++.+++.....    ....++..........+  ...+.++||||....           ....
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~   65 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVE----DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIR   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCcc----ccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHH
Confidence            379999999999999999999765421    12222222222222223  245889999994321           2222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......++++++++....-+... ..++..+..... ....|+++++||+|...........         .....+..
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~  135 (164)
T cd04139          66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW  135 (164)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence            233456699999999874433332 233333333211 2224899999999986520011111         11122221


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ..      ..+..|+.++.+++++++.+.+.+.
T Consensus       136 ~~------~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         136 GV------PYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             CC------eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11      2345677788999999998876654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.64  E-value=9.4e-15  Score=109.50  Aligned_cols=162  Identities=10%  Similarity=0.054  Sum_probs=93.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ++..+|+++|+.|+|||||++.+.......     ...|........ ......+.++||||..           .+...
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-----~~~T~~~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~   77 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-----TIPTIGFNVETV-EYKNLKFTMWDVGGQD-----------KLRPL   77 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-----cCCccccceEEE-EECCEEEEEEECCCCH-----------hHHHH
Confidence            445799999999999999999996554321     122322222222 2356679999999932           12222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .......+|++++|+|+++.-+.....  ..+...+...  ...|++|+.||.|....  ....+.......       .
T Consensus        78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~-------~  146 (182)
T PTZ00133         78 WRHYYQNTNGLIFVVDSNDRERIGDAR--EELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGL-------H  146 (182)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHH--HHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCC-------C
Confidence            334456789999999997443333322  1222222211  12389999999998643  222221111000       0


Q ss_pred             hcCC-eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+.. .+++    ...||.++.+++++++.|.+.+..
T Consensus       147 ~~~~~~~~~----~~~Sa~tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        147 SVRQRNWYI----QGCCATTAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             cccCCcEEE----EeeeCCCCCCHHHHHHHHHHHHHH
Confidence            1111 1221    134777889999999998876654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.64  E-value=1.1e-14  Score=126.99  Aligned_cols=166  Identities=17%  Similarity=0.215  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      +|+++|+.++|||||+++|+|...-. ........|++.........++..+.++||||.           +.+...+..
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-----------e~fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-----------EKFLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-----------HHHHHHHHH
Confidence            68999999999999999999854211 112234566655444333334567899999993           233344444


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+|++++|++++.+....+...+.++... +.+   ++++++||+|....  .++....+.     +.+....... 
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~-  138 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGF-  138 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCC-
Confidence            45678999999999977888877777766443 333   46789999998765  555544443     4444332210 


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                        -....++.|+.++.++++|++.|..+..+.
T Consensus       139 --~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~  168 (614)
T PRK10512        139 --AEAKLFVTAATEGRGIDALREHLLQLPERE  168 (614)
T ss_pred             --CCCcEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence              011234567788899999999998876653

>PRK11058 GTPase HflX; Provisional

Probab=99.64  E-value=1.2e-14  Score=121.60  Aligned_cols=165  Identities=18%  Similarity=0.109  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      ..|+|+|.+|||||||+|+|++.......  ....|.+.............+.++||||+.... +...+ +.+... ..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lv-e~f~~t-l~  272 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLV-AAFKAT-LQ  272 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHH-HHHHHH-HH
Confidence            47999999999999999999997653111  112333333223332333478899999985421 12211 222222 22


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      ....+|++++|+|+++..+...... .+++..+ ... ..|+++|+||+|+...  ... . ...         .. ...
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~-~~pvIiV~NKiDL~~~--~~~-~-~~~---------~~-~~~  336 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAH-EIPTLLVMNKIDMLDD--FEP-R-IDR---------DE-ENK  336 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccC-CCCEEEEEEcccCCCc--hhH-H-HHH---------Hh-cCC
Confidence            3467899999999986655555432 3333333 221 2389999999998643  111 0 110         00 010


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..     .+..||.++.++++|++.|.+.+..
T Consensus       337 ~~-----~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        337 PI-----RVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             Cc-----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            10     1335788889999999999888754

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.64  E-value=1.1e-14  Score=106.80  Aligned_cols=154  Identities=12%  Similarity=0.074  Sum_probs=87.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|..|||||||++.+...... .    ...|......... .....+.++||||...           +.......
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~-~----~~pt~g~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~~~   64 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIV-T----TIPTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRHY   64 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc-c----cCCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHH
Confidence            7999999999999999999655432 1    1222222222222 3566789999999421           22223334


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      +.++|++++|+|.++..+.....  +.+.......  ...|++|+.||.|+...  ....+......      +...-.+
T Consensus        65 ~~~ad~~i~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~------~~~~~~~  134 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERIGEAR--EELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLG------LHSLRNR  134 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHHHHHH--HHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhC------ccccCCC
Confidence            56789999999998544443332  2222222111  12389999999998644  22222222100      0000011


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                      .+.    ....||.++.+++++++.|.
T Consensus       135 ~~~----~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         135 NWY----IQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             CEE----EEEeeCCCCCCHHHHHHHHh
Confidence            111    13457888899999998774

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04114 Rab30 Rab30 subfamily

Probab=99.64  E-value=1.7e-14  Score=106.66  Aligned_cols=158  Identities=16%  Similarity=0.104  Sum_probs=91.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+++++|++|||||||++++++......  ...+.+.+....... ..+  ..+.++|+||..           .+...
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~-----------~~~~~   72 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVE-IKGEKIKLQIWDTAGQE-----------RFRSI   72 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHH
Confidence            47899999999999999999986654211  111111122211111 333  347889999932           12222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      ........|++++++|.+...+.... .++..+.......  .|++++.||+|....  ..+...+.       +.+.+.
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~--~~i~~~~~-------~~~~~~  141 (169)
T cd04114          73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER--REVSQQRA-------EEFSDA  141 (169)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCHHHH-------HHHHHH
Confidence            23344567999999998754444332 3444444443323  278899999998654  33322111       122222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ...      ..+..|+.++.++.++++.|.+.
T Consensus       142 ~~~------~~~~~Sa~~~~gv~~l~~~i~~~  167 (169)
T cd04114         142 QDM------YYLETSAKESDNVEKLFLDLACR  167 (169)
T ss_pred             cCC------eEEEeeCCCCCCHHHHHHHHHHH
Confidence            111      12345677789999999988764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01863 Rab18 Rab18 subfamily

Probab=99.64  E-value=6.6e-15  Score=107.93  Aligned_cols=158  Identities=15%  Similarity=0.070  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .+++++|++|+|||||+++|++......  .....+.+........ .....+.++||||...           +.....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~   67 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPD--LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER-----------FRTLTS   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc--cCCcccceEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhH
Confidence            3799999999999999999998764211  1112222221111111 1224589999999322           122222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ...+..|+++++++.++.-+.... .++..+...... ...|++++.||+|....  ......        ..++.....
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~iv~nK~D~~~~--~~~~~~--------~~~~~~~~~  136 (161)
T cd01863          68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTN-NDIVKMLVGNKIDKENR--EVTREE--------GLKFARKHN  136 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCC-CCCcEEEEEECCccccc--ccCHHH--------HHHHHHHcC
Confidence            334578999999999855454443 245555544322 22478999999998743  211111        112222221


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      -.      ....++.++.++.++++.+.+.
T Consensus       137 ~~------~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         137 ML------FIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             CE------EEEEecCCCCCHHHHHHHHHHh
Confidence            11      2334666778999999876553

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PTZ00369 Ras-like protein; Provisional

Probab=99.64  E-value=1.6e-14  Score=108.84  Aligned_cols=161  Identities=20%  Similarity=0.131  Sum_probs=94.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-ee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|.+|+|||||++.+.+....    .....|....... .. ......+.++||||..+.           ...
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~l   69 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFI----DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY-----------SAM   69 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCC----cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc-----------hhh
Confidence            479999999999999999999976542    1122222211111 11 112235788999995432           122


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      ........+++++++|++++-|.... .++..+...... ...|++++.||+|....  ..+....       .....+.
T Consensus        70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~~  139 (189)
T PTZ00369         70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE--RQVSTGE-------GQELAKS  139 (189)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence            22344577999999999865554443 344444443221 12389999999997543  2222100       1112222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ....      .+..||.++.+++++++.+.+.+.+
T Consensus       140 ~~~~------~~e~Sak~~~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        140 FGIP------FLETSAKQRVNVDEAFYELVREIRK  168 (189)
T ss_pred             hCCE------EEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            2211      2345677889999999888766654

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.64  E-value=2.4e-14  Score=106.51  Aligned_cols=163  Identities=17%  Similarity=0.079  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+++++|..|||||||+..+.+....    .....|...........++  ..+.++||||...           +....
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED-----------YDRLR   66 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC----CcCCCcceeeeEEEEEECCEEEEEEEEECCCchh-----------hhhhh
Confidence            58999999999999999999876542    1222232221111111223  4578999999322           22222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc----CCchHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKE  171 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~----~~~~~~~  171 (228)
                      ......+|+++++++++++-|....  .|+..+.....   ..|++++.||+|+.... ..........    ..+...+
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  142 (174)
T cd01871          67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLA  142 (174)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHHH
Confidence            3345688999999999866666654  35565554432   23899999999985430 2222221110    0112222


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      +.+.....     ..+..||.++.+++++++.+.+
T Consensus       143 ~~~~~~~~-----~~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         143 MAKEIGAV-----KYLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             HHHHcCCc-----EEEEecccccCCHHHHHHHHHH
Confidence            32222210     1135678888999999987764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.64  E-value=7.4e-15  Score=107.57  Aligned_cols=158  Identities=14%  Similarity=0.066  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|++|||||||++.+++......     ..|...............+.++||||...           +...+...
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            489999999999999999998765221     12222222222222345799999999431           11222233


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ...+|++++++|..+..+..... ++..+..... ....|+++++||+|....  ....+......      ..+.+...
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~~~~------~~~~~~~~  135 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPGA--LTAEEITRRFK------LKKYCSDR  135 (160)
T ss_pred             hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECcccccC--cCHHHHHHHcC------CcccCCCC
Confidence            45679999999998544333322 2222221111 012389999999998543  22222111100      01112111


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ..   ..+..||.++.+++++++.|.+
T Consensus       136 ~~---~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         136 DW---YVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cE---EEEecccccCCChHHHHHHHhc
Confidence            00   1234688889999999988753

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=1.3e-14  Score=105.82  Aligned_cols=166  Identities=17%  Similarity=0.168  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~   97 (228)
                      .+|+|+|.+|+|||-|+..+.+.....+  ...++..+......+.. ....+++|||.|            ++.+ ...
T Consensus        10 FKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG------------QERFrtit   75 (205)
T KOG0084|consen   10 FKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVELDGKTIKLQIWDTAG------------QERFRTIT   75 (205)
T ss_pred             EEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeeecceEEEEEeeeccc------------cHHHhhhh
Confidence            5899999999999999999998876322  22234444444443321 223589999999            3433 444


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ...++++|++|+|+|++..-|+... +|+..+........  |.+||.||+|+.+.  ..+.....       +++....
T Consensus        76 ~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~~a-------~~fa~~~  144 (205)
T KOG0084|consen   76 SSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTEEA-------QEFADEL  144 (205)
T ss_pred             HhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHHHH-------HHHHHhc
Confidence            5678999999999999988888775 57888887766665  89999999998865  44432111       1222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCC
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP  215 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~  215 (228)
                      +-..     -...||+...++++.+..|...+..+....
T Consensus       145 ~~~~-----f~ETSAK~~~NVe~~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  145 GIPI-----FLETSAKDSTNVEDAFLTLAKELKQRKGLH  178 (205)
T ss_pred             CCcc-----eeecccCCccCHHHHHHHHHHHHHHhcccC
Confidence            1111     234577778899999988877777654443

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.64  E-value=2.9e-16  Score=125.70  Aligned_cols=167  Identities=17%  Similarity=0.195  Sum_probs=112.7

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      ..-+++..++|+|+||||||||+++|+|...+.+|    .+.........  ........++.+.|.++...+..+.+ +
T Consensus        26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G----~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l-~  100 (293)
T COG1131          26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG----EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENL-E  100 (293)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHH-H
Confidence            34456789999999999999999999999875443    33332221111  01123346788888887776654443 3


Q ss_pred             HHHHHHhhc----cCCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           92 EIVKCLGMA----KDGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        92 ~~~~~~~~~----~~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                      .+..+....    ...++.++-.+..       -..+|.|+++++.++.+++++|.   +++   |++.+|....  ..+
T Consensus       101 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~---lliLDEPt~GLDp~~~--~~~  175 (293)
T COG1131         101 FFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE---LLILDEPTSGLDPESR--REI  175 (293)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC---EEEECCCCcCCCHHHH--HHH
Confidence            223322211    0112222222211       14799999999999999999984   555   9999999887  777


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      .+.++++.          +|.+.++...|+..+++.+|.+...
T Consensus       176 ~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~  218 (293)
T COG1131         176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE  218 (293)
T ss_pred             HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe
Confidence            77776654          8999999999999999998876654

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.64  E-value=2.5e-15  Score=108.00  Aligned_cols=140  Identities=19%  Similarity=0.216  Sum_probs=84.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|++|+|||||+|++++...    .  ...|....      ...   .++||||....       .+++.+.+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~----~--~~~t~~~~------~~~---~~iDt~G~~~~-------~~~~~~~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI----L--YKKTQAVE------YND---GAIDTPGEYVE-------NRRLYSALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc----c--cccceeEE------EcC---eeecCchhhhh-------hHHHHHHHHHH
Confidence            799999999999999999998753    1  11221111      111   58999995311       12233333234


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
                      .+++|++++|+|+++..+.....+++.    ..    +|+++++||+|+...  ....+.        ..+..+....  
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~~----~~----~p~ilv~NK~Dl~~~--~~~~~~--------~~~~~~~~~~--  119 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFASI----FV----KPVIGLVTKIDLAEA--DVDIER--------AKELLETAGA--  119 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHHh----cc----CCeEEEEEeeccCCc--ccCHHH--------HHHHHHHcCC--
Confidence            678999999999986666554433322    12    279999999998643  211111        1122222111  


Q ss_pred             EEeeCCCcccccchHHHHHHHHHHH
Q 027090          181 VLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                         ...+..||.++.+++++++.+.
T Consensus       120 ---~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       120 ---EPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             ---CcEEEEecCCCCCHHHHHHHHh
Confidence               1223457778899999988763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01890 LepA LepA subfamily

Probab=99.64  E-value=4.8e-15  Score=110.59  Aligned_cols=160  Identities=19%  Similarity=0.174  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccc-c-----cCC-------CCCcceeeEeEeee----eeCCcEEEEEeCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFK-A-----SAG-------SSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~-~-----~~~-------~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~~~~   82 (228)
                      ++|+++|..|+|||||+++|++..... .     ...       ....+.........    ......+.++||||..+.
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            479999999999999999998742100 0     000       00112111111111    123445889999996542


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhh
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~  162 (228)
                             ...+.    .....+|++++|+|+..+.+......+..+..   ..  .|+++++||+|....  . .....+
T Consensus        81 -------~~~~~----~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~--~-~~~~~~  141 (179)
T cd01890          81 -------SYEVS----RSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA--D-PERVKQ  141 (179)
T ss_pred             -------HHHHH----HHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC--C-HHHHHH
Confidence                   12222    23346799999999986666665554433321   12  379999999998543  2 111111


Q ss_pred             ccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .     +.+... +.     ....+..||.++.++++|++.+.+.++
T Consensus       142 ~-----~~~~~~-~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         142 Q-----IEDVLG-LD-----PSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             H-----HHHHhC-CC-----cccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            1     211111 11     012346688888999999998877653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01862 Rab7 Rab7 subfamily

Probab=99.63  E-value=2.4e-14  Score=105.97  Aligned_cols=162  Identities=18%  Similarity=0.096  Sum_probs=92.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+|+|++|||||||++++++......  .......+....... ..+  ..+.++|+||...           +.....
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~-----------~~~~~~   67 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVT-VDDKLVTLQIWDTAGQER-----------FQSLGV   67 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcC--cCCccceEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHhHHH
Confidence            799999999999999999998764111  111222221111111 223  3467999999321           122222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC--ccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHH
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ  174 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~--~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~  174 (228)
                      ...+.+|++++++++....+.... .+...+.....  .+...|++++.||+|....  ... .+.++        .+.+
T Consensus        68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~--------~~~~  137 (172)
T cd01862          68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQ--------QWCQ  137 (172)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHH--------HHHH
Confidence            344678999999999855444433 23333333222  1123489999999999742  111 11111        1222


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ....     ...+..|+.++.+++++++.+.+.+.+.
T Consensus       138 ~~~~-----~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         138 SNGN-----IPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             HcCC-----ceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            2211     1223456677899999999988776654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04111 Rab39 Rab39 subfamily

Probab=99.63  E-value=2.6e-14  Score=109.57  Aligned_cols=163  Identities=14%  Similarity=0.104  Sum_probs=95.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|+.|+|||||++.+++......  ...+...+..........  ...+.++||||..           .+....
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~~   69 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE-----------RFRSIT   69 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcch-----------hHHHHH
Confidence            6899999999999999999998764211  111222222222222112  2458899999932           122222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......|++++++|+++.-|.... .++..+...... ...|++++.||.|+...  ..+..       ....++.+..
T Consensus        70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~v~~-------~~~~~~~~~~  139 (211)
T cd04111          70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQVTR-------EEAEKLAKDL  139 (211)
T ss_pred             HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cccCH-------HHHHHHHHHh
Confidence            2345678999999999865555543 355555444322 11267889999998653  22211       0122233332


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .-.      .+..|+.++.++.++++.|.+.+.+.
T Consensus       140 ~~~------~~e~Sak~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         140 GMK------YIETSARTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             CCE------EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            211      22456777899999999887766543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03118 Rab family protein; Provisional

Probab=99.63  E-value=3.9e-14  Score=108.66  Aligned_cols=167  Identities=15%  Similarity=0.080  Sum_probs=96.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      ++.....+|+|+|+.|+|||||+++|++...  ... ......+....... ..  ...+.++||||...          
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~~-~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~----------   74 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSV--EDL-APTIGVDFKIKQLT-VGGKRLKLTIWDTAGQER----------   74 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCC--CCc-CCCceeEEEEEEEE-ECCEEEEEEEEECCCchh----------
Confidence            3344457999999999999999999998754  111 11112222112222 22  24578999999432          


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchH
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL  169 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~--~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~  169 (228)
                       +........+.+|++++++|+++.-+.....  +...+... ......|+++|.||+|+...  ..+...       ..
T Consensus        75 -~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~--~~i~~~-------~~  143 (211)
T PLN03118         75 -FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESE--RDVSRE-------EG  143 (211)
T ss_pred             -hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECcccccc--CccCHH-------HH
Confidence             1222223345779999999998655555543  32333222 21112378899999998644  322110       01


Q ss_pred             HHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .++.......      .+..++.++.+++++++.|.+.+.+.
T Consensus       144 ~~~~~~~~~~------~~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        144 MALAKEHGCL------FLECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHcCCE------EEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            1222211111      13456777899999999998777653

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.63  E-value=4.4e-14  Score=103.58  Aligned_cols=153  Identities=20%  Similarity=0.182  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeeee---eCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      +|+++|.+|+|||||++.+++....    .....|.....  .....   .....+.++||||.           +++..
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~   66 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFT----KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ-----------EEFDA   66 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC----CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch-----------HHHHH
Confidence            7999999999999999999987542    11122322221  11111   12345899999992           22233


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ......+..|++++++++++.-+.... .++..+......   .|++++.||+|....  ..+..  +     ....+.+
T Consensus        67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~---~p~iiv~nK~Dl~~~--~~v~~--~-----~~~~~~~  134 (162)
T cd04106          67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD---IPMVLVQTKIDLLDQ--AVITN--E-----EAEALAK  134 (162)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhcccc--cCCCH--H-----HHHHHHH
Confidence            333445688999999999855444443 344444443322   389999999998654  22211  0     1222333


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ...-.      .+..|+.++.+++++++.|..
T Consensus       135 ~~~~~------~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         135 RLQLP------LFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             HcCCe------EEEEECCCCCCHHHHHHHHHH
Confidence            22222      234566677889999987754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04151 Arl1 Arl1 subfamily

Probab=99.63  E-value=6.5e-15  Score=107.78  Aligned_cols=155  Identities=14%  Similarity=0.047  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+|+|+.|+|||||+++|.......     ...|......... .....+.++||||...           +.......
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-----~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-----TIPTIGFNVETVT-YKNLKFQVWDLGGQTS-----------IRPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-----cCCccCcCeEEEE-ECCEEEEEEECCCCHH-----------HHHHHHHH
Confidence            58999999999999999997665421     1222222222222 3556789999999432           12222334


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHH-HHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090          101 KDGIHAFLVVFSVTNRFSQEE-ETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~-~~~l-~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      ...++++++++|+++..+... .+.+ .++....  ...+|+++++||+|....  ....+....     +. . .....
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~--~~~~~i~~~-----~~-~-~~~~~  132 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGA--LSEAEISEK-----LG-L-SELKD  132 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCC--CCHHHHHHH-----hC-c-cccCC
Confidence            457899999999984433222 2222 2222111  012489999999998654  222221111     00 0 00000


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ..   ...++.|+.++.+++++++.+.+
T Consensus       133 ~~---~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         133 RT---WSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             Cc---EEEEEeeccCCCCHHHHHHHHhc
Confidence            00   02346688889999999988753

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00880 Era_like Era (E

Probab=99.63  E-value=2.3e-14  Score=104.11  Aligned_cols=162  Identities=24%  Similarity=0.179  Sum_probs=93.0

Q ss_pred             EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCC
Q 027090           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG  103 (228)
Q Consensus        24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (228)
                      |+|+.|+|||||+|+|++......+ .....+...............+.++||||+.+............    ......
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence            5899999999999999987653221 11222323232222222256799999999887654433211122    223346


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEe
Q 027090          104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF  183 (228)
Q Consensus       104 ~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
                      +|.++++++.....+.....++....   ...  .|+++++||+|....  .......+.     ........     ..
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~---~~~--~~~ivv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~-----~~  138 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLR---ERG--KPVLLVLNKIDLLPE--EEEEELLEL-----RLLILLLL-----LG  138 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHH---hcC--CeEEEEEEccccCCh--hhHHHHHHH-----HHhhcccc-----cC
Confidence            79999999998666665555222221   112  379999999998866  444433210     00000000     01


Q ss_pred             eCCCcccccchHHHHHHHHHHHHH
Q 027090          184 DNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       184 ~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ...+..++.++.++.++++.+.+.
T Consensus       139 ~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         139 LPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             CceEEEeeeccCCHHHHHHHHHhh
Confidence            122334556667889998887654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.63  E-value=2.9e-14  Score=110.75  Aligned_cols=87  Identities=20%  Similarity=0.256  Sum_probs=56.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +++|+|++|+|||||+|+|+|....   ....+.++...........+..+.++||||+.+...........+    ...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~---v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSE---VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQV----IAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence            6899999999999999999997632   223333333222222335677899999999876442221111222    233


Q ss_pred             cCCccEEEEEEeCC
Q 027090          101 KDGIHAFLVVFSVT  114 (228)
Q Consensus       101 ~~~~~~il~v~~~~  114 (228)
                      .+.+|+++++++++
T Consensus        75 ~~~ad~il~V~D~t   88 (233)
T cd01896          75 ARTADLILMVLDAT   88 (233)
T ss_pred             hccCCEEEEEecCC
Confidence            45779999999876

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.63  E-value=4.6e-14  Score=104.56  Aligned_cols=157  Identities=16%  Similarity=0.095  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH-
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV-   94 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~-   94 (228)
                      .+|+++|++|+|||||++.+++.....    ....+..  ....... ..+  ..+.++||||..           ++. 
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~-----------~~~~   66 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPE----RTEATIGVDFRERTVE-IDGERIKVQLWDTAGQE-----------RFRK   66 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCC----ccccceeEEEEEEEEE-ECCeEEEEEEEeCCChH-----------HHHH
Confidence            589999999999999999998766421    1122222  1111111 223  468899999932           111 


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .......+.+|++++++|++++-|..... ++..+...... ...|++++.||+|....  ..+...       ...++.
T Consensus        67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~-------~~~~~~  136 (170)
T cd04115          67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQ--IQVPTD-------LAQRFA  136 (170)
T ss_pred             hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhh--cCCCHH-------HHHHHH
Confidence            12334456789999999998666665543 45455443221 12389999999998654  332211       112222


Q ss_pred             HhcCCeEEEeeCCCcccccc---hHHHHHHHHHHHHHH
Q 027090          174 QLCDNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVI  208 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~i~~~~  208 (228)
                      +...-.++      ..||.+   ..++.+++..+.+.+
T Consensus       137 ~~~~~~~~------e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         137 DAHSMPLF------ETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             HHcCCcEE------EEeccCCcCCCCHHHHHHHHHHHh
Confidence            22221222      234444   678888887766544

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PLN03110 Rab GTPase; Provisional

Probab=99.63  E-value=8.6e-14  Score=107.08  Aligned_cols=161  Identities=16%  Similarity=0.091  Sum_probs=97.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ...+|+++|+.|+|||||++.|++.....    ....|....  ...... .....+.++||||.           ..+.
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~----~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~-----------~~~~   75 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL----ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ-----------ERYR   75 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCC----CCCCceeEEEEEEEEEECCEEEEEEEEECCCc-----------HHHH
Confidence            34799999999999999999999876521    112232222  122211 12236889999992           2223


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .......+..+++++++|+++.-+.... .|+..+.......  .|++++.||+|+...  ..+....       .+.+.
T Consensus        76 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~--~~~~~~~-------~~~l~  144 (216)
T PLN03110         76 AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL--RSVAEED-------GQALA  144 (216)
T ss_pred             HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc--cCCCHHH-------HHHHH
Confidence            3334455678999999999866565554 4666665543322  389999999998543  3222111       11222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ....-      ..+..+|.++.+++++++.+...+..
T Consensus       145 ~~~~~------~~~e~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        145 EKEGL------SFLETSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             HHcCC------EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            22111      12344667778899999888666544

>cd00154 Rab Rab family

Probab=99.63  E-value=3.9e-14  Score=103.03  Aligned_cols=153  Identities=20%  Similarity=0.169  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-ee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+++|++|+|||||+|.+++......    ...|......... ..  ....+.++|+||..           .+....
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----------~~~~~~   66 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE-----------RFRSIT   66 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCc----cCCceeeeeEEEEEEECCEEEEEEEEecCChH-----------HHHHHH
Confidence            799999999999999999998876222    1222222222111 11  23458899999942           222233


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ....+.+|++++++++...-+... ..++..+.......  .|+++++||+|..... ....+.        ++++....
T Consensus        67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~~  135 (159)
T cd00154          67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLEDQR-QVSTEE--------AQQFAKEN  135 (159)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccccccc-cccHHH--------HHHHHHHc
Confidence            344567899999999984333333 23444444443222  3899999999986220 212222        22233322


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                      ...+      +..++.++.++.++++.|.
T Consensus       136 ~~~~------~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         136 GLLF------FETSAKTGENVEELFQSLA  158 (159)
T ss_pred             CCeE------EEEecCCCCCHHHHHHHHh
Confidence            2222      3345556678888888764

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04125 RabA_like RabA-like subfamily

Probab=99.63  E-value=4.2e-14  Score=106.47  Aligned_cols=161  Identities=19%  Similarity=0.219  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      +|+++|+.|+|||||++.+++.....  ....+.+.+........ .....+.++||||..           .+......
T Consensus         2 ki~v~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~-----------~~~~~~~~   68 (188)
T cd04125           2 KVVIIGDYGVGKSSLLKRFTEDEFSE--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE-----------RFRSLNNS   68 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcH-----------HHHhhHHH
Confidence            79999999999999999999876521  11112222222122211 112357899999932           22223334


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      ....+|++++++|.+++-|.... .++..+.......  .|++++.||.|....  ..+....       ...+.+...-
T Consensus        69 ~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~~~  137 (188)
T cd04125          69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSLNI  137 (188)
T ss_pred             HccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHHHcCC
Confidence            45678999999999865555443 3555555443322  379999999998744  3222111       1112221111


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                            ..+..++.++.+++++++.+.+.+..+
T Consensus       138 ------~~~evSa~~~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         138 ------PFFETSAKQSINVEEAFILLVKLIIKR  164 (188)
T ss_pred             ------eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence                  123456667789999998877766553

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=99.63  E-value=1.5e-14  Score=106.34  Aligned_cols=156  Identities=19%  Similarity=0.176  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee-eEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+++|.+|+|||||++.+.......    ....|.. ....... .++  ..+.++||||.....           ..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~   65 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIE----KYDPTIEDFYRKEIE-VDSSPSVLEILDTAGTEQFA-----------SM   65 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCchhheEEEEEE-ECCEEEEEEEEECCCccccc-----------ch
Confidence            589999999999999999988765421    1122221 1111111 222  347899999953321           11


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|+++++++.++.-|.... .++..+..... ....|++++.||+|+...  ..+...       ....+.+.
T Consensus        66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~-------~~~~~~~~  135 (163)
T cd04176          66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSA-------EGRALAEE  135 (163)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHH-------HHHHHHHH
Confidence            12233467999999999855554443 34444444322 122489999999998543  222110       01112221


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ...      ..+..||.++.++.++++.+.+.
T Consensus       136 ~~~------~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04176         136 WGC------PFMETSAKSKTMVNELFAEIVRQ  161 (163)
T ss_pred             hCC------EEEEecCCCCCCHHHHHHHHHHh
Confidence            111      12345777889999999887654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04118 Rab24 Rab24 subfamily

Probab=99.63  E-value=1.7e-14  Score=109.02  Aligned_cols=162  Identities=17%  Similarity=0.159  Sum_probs=93.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+|+|++|+|||||++.+++..... +  ....|....... .....+  ..+.++||||...           +....
T Consensus         2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~   67 (193)
T cd04118           2 KVVMLGKESVGKTSLVERYVHHRFLV-G--PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER-----------YEAMS   67 (193)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCcCC-c--CcccceeeEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhh
Confidence            79999999999999999999775421 1  122232222211 111223  3467999999432           11222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++++++++.-|... ..+++.+.....   ..|+++|.||+|+...  ......+.   .....++....
T Consensus        68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~~~  139 (193)
T cd04118          68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLIEQ--DRSLRQVD---FHDVQDFADEI  139 (193)
T ss_pred             HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC---CCCEEEEEEccccccc--ccccCccC---HHHHHHHHHHc
Confidence            234457899999999985544443 235555554322   2389999999997543  21100000   01122222221


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...      .+..|+.++.+++++++.+.+.+..
T Consensus       140 ~~~------~~~~Sa~~~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         140 KAQ------HFETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             CCe------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            111      1344777889999999988876644

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04128 Spg1 Spg1p

Probab=99.62  E-value=3.6e-14  Score=106.32  Aligned_cols=160  Identities=16%  Similarity=0.100  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--EeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      +|+++|..|+|||||++.+.+....    ..+..|.....  .... .++  ..+.++||+|-.           .+...
T Consensus         2 Ki~vlG~~~vGKTsLi~~~~~~~f~----~~~~~T~g~~~~~~~i~-~~~~~~~l~iwDt~G~~-----------~~~~~   65 (182)
T cd04128           2 KIGLLGDAQIGKTSLMVKYVEGEFD----EDYIQTLGVNFMEKTIS-IRGTEITFSIWDLGGQR-----------EFINM   65 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEE-ECCEEEEEEEEeCCCch-----------hHHHh
Confidence            7999999999999999999876542    12233332222  1122 233  458999999932           22233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccch-hhHHHHhhccCCchHHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .....+.+|++++++|++++-|.... .|++.+.......  .| ++|.||+|+..... ...+...+.     ..++.+
T Consensus        66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a~  137 (182)
T cd04128          66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYAK  137 (182)
T ss_pred             hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHHH
Confidence            34456788999999999876666654 3566555442222  24 67899999853200 111111111     223333


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..+.      ..+..||.++.+++++++.+.+.+.+
T Consensus       138 ~~~~------~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         138 AMKA------PLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             HcCC------EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            2221      12345778889999999988766654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd00879 Sar1 Sar1 subfamily

Probab=99.62  E-value=2.1e-14  Score=108.28  Aligned_cols=170  Identities=9%  Similarity=-0.040  Sum_probs=90.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +..+|+++|++|||||||+++|++.....     ...|........ ...+..+.++|+||...           .....
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~-----~~~T~~~~~~~i-~~~~~~~~l~D~~G~~~-----------~~~~~   80 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ-----HVPTLHPTSEEL-TIGNIKFKTFDLGGHEQ-----------ARRLW   80 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCccCcceEEE-EECCEEEEEEECCCCHH-----------HHHHH
Confidence            45789999999999999999999865411     112222222222 24567789999999321           11222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHHHHHHh
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      ....+.++++++++|..+.-+... ..++..+..... ....|+++++||+|..... ...+..++.... ....+....
T Consensus        81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~-~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~  158 (190)
T cd00879          81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEE-LANVPFLILGNKIDLPGAVSEEELRQALGLYG-TTTGKGVSL  158 (190)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCcc-ccCCCEEEEEeCCCCCCCcCHHHHHHHhCccc-ccccccccc
Confidence            233456799999999974323222 222222222111 1224899999999986430 122222222100 000000000


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ....... ...+..||.++.++.++++.+.+.
T Consensus       159 ~~~~~~~-~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         159 KVSGIRP-IEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cccCcee-EEEEEeEecCCCChHHHHHHHHhh
Confidence            0000000 012456888899999999988653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.62  E-value=4e-14  Score=107.20  Aligned_cols=116  Identities=16%  Similarity=0.252  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC-cccccC-------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRK-AFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~   85 (228)
                      ++|+++|..|+|||||+++|++.. .+....             .....+....... ...+...+.++||||..+    
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~-~~~~~~~~~l~DtpG~~~----   77 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTA-VTYKDTKINIVDTPGHAD----   77 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeE-EEECCEEEEEEECCCcHH----
Confidence            689999999999999999998621 111110             0011222211111 224566789999999432    


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                             +...+......+|++++|+++.++.......++..+..   ..  .|+++++||+|....
T Consensus        78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~  132 (194)
T cd01891          78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA  132 (194)
T ss_pred             -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence                   22233334457799999999985544444343333322   12  378999999998643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.62  E-value=2.1e-14  Score=106.14  Aligned_cols=159  Identities=13%  Similarity=0.060  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|+.|||||||++.+++...  .   ....|......... .+...+.++|+||..           .+.......
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~--~---~~~~t~g~~~~~~~-~~~~~~~i~D~~G~~-----------~~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIP--K---KVAPTVGFTPTKLR-LDKYEVCIFDLGGGA-----------NFRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCC--c---cccCcccceEEEEE-ECCEEEEEEECCCcH-----------HHHHHHHHH
Confidence            479999999999999999998622  1   11222222222222 456778999999932           122222334


Q ss_pred             cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ...+|++++|+|.++..+..+. .++..+..... ....|++++.||.|....  ....+..+...   +.++.+.....
T Consensus        64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~~~---l~~~~~~~~~~  137 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA--LLGADVIEYLS---LEKLVNENKSL  137 (167)
T ss_pred             HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC--CCHHHHHHhcC---cccccCCCCce
Confidence            4677999999999854444433 23333332211 122489999999998765  43443333211   11111111112


Q ss_pred             EEEeeCCCcccccch------HHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGT------EQVRQLLSLVNS  206 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~------~~~~~l~~~i~~  206 (228)
                      +.+    ...+|.++      .++.+.+++|..
T Consensus       138 ~~~----~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         138 CHI----EPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             EEE----EEeEceeCCCCccccCHHHHHHHHhc
Confidence            222    22345554      688888888753

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.62  E-value=1e-14  Score=108.56  Aligned_cols=156  Identities=12%  Similarity=0.029  Sum_probs=89.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+++|++|+|||||++.|++......     ..|....... ...+...+.++||||...           +.....
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~-~~~~~~~~~l~D~~G~~~-----------~~~~~~   77 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEE-IVYKNIRFLMWDIGGQES-----------LRSSWN   77 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEE-EEECCeEEEEEECCCCHH-----------HHHHHH
Confidence            47899999999999999999987654211     2222222222 224566799999999432           222222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ....++|++++|+|.++.-+.... ..+..+..... ....|+++++||+|....  ....+..+.+..       ..+.
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~-------~~~~  147 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISESLGL-------TSIR  147 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHHhCc-------cccc
Confidence            334578999999999854333222 22222221111 012489999999998643  222221111000       0011


Q ss_pred             -CeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090          178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                       ..+    .....||.++.+++++++.|.
T Consensus       148 ~~~~----~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         148 DHTW----HIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             CCce----EEEecccCCCCCHHHHHHHHh
Confidence             111    123568888899999998874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00876 Ras Ras family

Probab=99.62  E-value=1.6e-14  Score=105.49  Aligned_cols=155  Identities=19%  Similarity=0.173  Sum_probs=89.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+++|+.|||||||++++++...    ......++...........  ...+.++|+||...           +.....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTF----VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-----------FSAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC----CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence            589999999999999999998764    2222223222222222223  24578999999332           222222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHHhc
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......|+++++++.++.-+.... .++..+...... ...|++++.||+|....  ... .+.        ........
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~--~~~~~~~--------~~~~~~~~  134 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENE--RQVSKEE--------GKALAKEW  134 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCccccc--ceecHHH--------HHHHHHHc
Confidence            334567999999998754444333 334444443331 12389999999998753  211 111        12222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ..      .....++.++.+++++++.|.+.
T Consensus       135 ~~------~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         135 GC------PFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CC------cEEEeccCCCCCHHHHHHHHHhh
Confidence            21      22345666778999999887653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.62  E-value=2.6e-14  Score=106.80  Aligned_cols=163  Identities=20%  Similarity=0.213  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|++|+|||||++.+++.....    ....|+...........+  ..+.++||||..+           +....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~   66 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVE----SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE-----------YSILP   66 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcc----ccCcchhhhEEEEEEECCEEEEEEEEECCChHh-----------hHHHH
Confidence            589999999999999999999776421    112222111111111222  3478999999432           12222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......++++++++.+..-+..... ++..+...... ...|++++.||+|....  +.+...       ....+.+..
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~~  136 (180)
T cd04137          67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAESW  136 (180)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHHc
Confidence            23344679999999998544444333 23333332221 12389999999998643  222110       112222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      ..      .....|+.++.++.++++.+.+.+.....
T Consensus       137 ~~------~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  167 (180)
T cd04137         137 GA------AFLESSARENENVEEAFELLIEEIEKVEN  167 (180)
T ss_pred             CC------eEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            21      12345667778999999998887776543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04110 Rab35 Rab35 subfamily

Probab=99.62  E-value=6e-14  Score=106.62  Aligned_cols=160  Identities=18%  Similarity=0.174  Sum_probs=95.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ..+|+|+|+.|+|||||++.+.+....    .....|..  ........ .....+.++||||...           +..
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~   70 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFS----GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER-----------FRT   70 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC----CCcCccccceeEEEEEEECCEEEEEEEEeCCCchh-----------HHH
Confidence            479999999999999999999987641    11122222  11111111 1123578999999321           122


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........++++++|+|++++-|.... .++..+......   .|++++.||+|+...  ..+...       ....+.+
T Consensus        71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~piivVgNK~Dl~~~--~~~~~~-------~~~~~~~  138 (199)
T cd04110          71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD---VCKVLVGNKNDDPER--KVVETE-------DAYKFAG  138 (199)
T ss_pred             HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccccc--cccCHH-------HHHHHHH
Confidence            223344567999999999866555543 355555444322   378999999998654  222110       1112222


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ....      .....|+.++.++.++++.|.+.+...
T Consensus       139 ~~~~------~~~e~Sa~~~~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         139 QMGI------SLFETSAKENINVEEMFNCITELVLRA  169 (199)
T ss_pred             HcCC------EEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence            2221      123456677899999999887766653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04116 Rab9 Rab9 subfamily

Probab=99.61  E-value=4.6e-14  Score=104.43  Aligned_cols=161  Identities=16%  Similarity=0.038  Sum_probs=91.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ...+|+++|++|+|||||++.+++.......  ....+.+........ .....+.++||||.           +.+...
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~-----------~~~~~~   70 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ-----------ERFRSL   70 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc--CCceeeEEEEEEEEECCeEEEEEEEeCCCh-----------HHHHHh
Confidence            4479999999999999999999876542111  111111111111111 12235788999992           222233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC--ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~--~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .....+.+|+++++++++++-|.... .++..+.....  .+...|++++.||+|+...  ......        .+++.
T Consensus        71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~  140 (170)
T cd04116          71 RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEE--------AQAWC  140 (170)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHH--------HHHHH
Confidence            33445678999999999855444443 24444433322  1122489999999998643  111111        22232


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      +.....     ..+..||.++.++.++++.+.+
T Consensus       141 ~~~~~~-----~~~e~Sa~~~~~v~~~~~~~~~  168 (170)
T cd04116         141 RENGDY-----PYFETSAKDATNVAAAFEEAVR  168 (170)
T ss_pred             HHCCCC-----eEEEEECCCCCCHHHHHHHHHh
Confidence            222111     1134567778899999887654

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.61  E-value=1.3e-13  Score=106.05  Aligned_cols=166  Identities=14%  Similarity=0.078  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|..|+|||||++.+++...+    ..+..|....+......+  ...+.+|||+|-           .++....
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~----~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~-----------e~~~~l~   66 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYP----GSYVPTVFENYTASFEIDKRRIELNMWDTSGS-----------SYYDNVR   66 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC----CccCCccccceEEEEEECCEEEEEEEEeCCCc-----------HHHHHHh
Confidence            48999999999999999999987652    122333322221111122  345889999992           2233334


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----CchHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLK  170 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~~~  170 (228)
                      ...++.+|++++|+|.++.-|....  .|...+......   .|++||.||+|+...  ......+....     .....
T Consensus        67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~---~piiLVgnK~DL~~~--~~~~~~~~~~~~~pIs~e~g~  141 (222)
T cd04173          67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPN---AKVVLVGCKLDMRTD--LATLRELSKQRLIPVTHEQGT  141 (222)
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEEECcccccc--hhhhhhhhhccCCccCHHHHH
Confidence            4567889999999999976666554  244444433322   389999999998653  22111111100     11222


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHH-HHHHHHHHHHHHHh
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQ  210 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~  210 (228)
                      .+.+.....     ..+..||.+..+ +.++++....+.-.
T Consensus       142 ~~ak~~~~~-----~y~E~SAk~~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         142 VLAKQVGAV-----SYVECSSRSSERSVRDVFHVATVASLG  177 (222)
T ss_pred             HHHHHcCCC-----EEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence            333222211     112346666665 99999877665443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.61  E-value=5.1e-14  Score=106.95  Aligned_cols=160  Identities=19%  Similarity=0.194  Sum_probs=92.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee-eEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+++|.+|+|||||++.+++.....    ....|.. ....... ..+  ..+.++||||....           ....
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~-----------~~~~   64 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEP----KYRRTVEEMHRKEYE-VGGVSLTLDILDTSGSYSF-----------PAMR   64 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCc----cCCCchhhheeEEEE-ECCEEEEEEEEECCCchhh-----------hHHH
Confidence            58999999999999999999876421    1122221 1111111 223  45789999994432           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++++|+.+..+..... ++..+...... ...|++++.||+|..... ..+.. ...     .+......
T Consensus        65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~-~~v~~-~~~-----~~~~~~~~  136 (198)
T cd04147          65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEE-RQVPA-KDA-----LSTVELDW  136 (198)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccccc-ccccH-HHH-----HHHHHhhc
Confidence            23445789999999998554544433 33444443321 224899999999986420 21111 000     11110000


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .      ...+..++.++.++.++++.+.+.+..
T Consensus       137 ~------~~~~~~Sa~~g~gv~~l~~~l~~~~~~  164 (198)
T cd04147         137 N------CGFVETSAKDNENVLEVFKELLRQANL  164 (198)
T ss_pred             C------CcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence            1      112345778889999999998887664

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.61  E-value=2.6e-14  Score=107.33  Aligned_cols=166  Identities=10%  Similarity=-0.039  Sum_probs=90.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+..+|+++|.+|||||||++.+.+....  ..   ..|........ ...+..+.++||||...           ....
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~~---~~t~~~~~~~~-~~~~~~~~~~D~~G~~~-----------~~~~   77 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--QH---QPTQHPTSEEL-AIGNIKFTTFDLGGHQQ-----------ARRL   77 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc--cc---CCccccceEEE-EECCEEEEEEECCCCHH-----------HHHH
Confidence            34479999999999999999999987541  11   11222222221 23466789999999432           1222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCcc-chhhHHHHhhccCCchHHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .......+|++++|+|+++.-+.... ..+..+..... ....|++++.||+|.... ..+++.+.+.-      .+...
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~  150 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG  150 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence            23344678999999999743222222 12222221110 012389999999998533 01333333321      00000


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      .+...-.-.......++.++.++++++++|..
T Consensus       151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence            00000000111345577788999999998864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PLN03108 Rab family protein; Provisional

Probab=99.61  E-value=3.7e-14  Score=108.64  Aligned_cols=161  Identities=13%  Similarity=0.084  Sum_probs=91.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|++|+|||||++.+++......  ...+...+....... ..+  ..+.++||||..           .+...
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~--~~~ti~~~~~~~~i~-~~~~~i~l~l~Dt~G~~-----------~~~~~   71 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMIT-IDNKPIKLQIWDTAGQE-----------SFRSI   71 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCccceEEEEEEE-ECCEEEEEEEEeCCCcH-----------HHHHH
Confidence            36899999999999999999998754211  111222111111111 222  357899999932           11222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++++++.+.-+.... .++..+.......  .|++++.||+|+...  ..+..       ....++.+.
T Consensus        72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~--~~~~~-------~~~~~~~~~  140 (210)
T PLN03108         72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAHR--RAVST-------EEGEQFAKE  140 (210)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccc--cCCCH-------HHHHHHHHH
Confidence            22334577999999999855555543 4555444433222  389999999998654  22110       011122222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..-.      .+..++.++.++.++++.+.+.+-.
T Consensus       141 ~~~~------~~e~Sa~~~~~v~e~f~~l~~~~~~  169 (210)
T PLN03108        141 HGLI------FMEASAKTAQNVEEAFIKTAAKIYK  169 (210)
T ss_pred             cCCE------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            1111      2344666778899988766554443

>cd04126 Rab20 Rab20 subfamily

Probab=99.61  E-value=1.5e-14  Score=111.12  Aligned_cols=112  Identities=22%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|..|+|||||++.+++.....     ...|....... .......+.++||||....           .......
T Consensus         2 KIvivG~~~vGKTSLi~r~~~~~f~~-----~~~Tig~~~~~-~~~~~~~l~iwDt~G~e~~-----------~~l~~~~   64 (220)
T cd04126           2 KVVLLGDMNVGKTSLLHRYMERRFKD-----TVSTVGGAFYL-KQWGPYNISIWDTAGREQF-----------HGLGSMY   64 (220)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCC-----CCCccceEEEE-EEeeEEEEEEEeCCCcccc-----------hhhHHHH
Confidence            79999999999999999999876521     12222222221 1234456899999994321           1112233


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~  151 (228)
                      ...+|++++|+|++++-|..... ++..+.......  .|++||.||+|+..
T Consensus        65 ~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~  114 (220)
T cd04126          65 CRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE  114 (220)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence            56789999999999766666653 333333322222  37999999999864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04177 RSR1 RSR1 subgroup

Probab=99.61  E-value=5.8e-14  Score=103.76  Aligned_cols=161  Identities=20%  Similarity=0.133  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|.+|||||||++++.+....    .....|............  ...+.++||||....           ....
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~   66 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFI----ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-----------TAMR   66 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC----cccCCcchheEEEEEEECCEEEEEEEEeCCCcccc-----------hhhh
Confidence            58999999999999999999876642    112223222211111122  246789999995432           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......++++++++.+++-+..... +...+...... ...|++++.||+|....  +.+....       ...+.+..
T Consensus        67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~--~~~~~~~-------~~~~~~~~  136 (168)
T cd04177          67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDD--RQVSRED-------GVSLSQQW  136 (168)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhcccc--CccCHHH-------HHHHHHHc
Confidence            22334668999999998544444333 44444443221 22489999999998654  3221100       11122211


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...     ..+..||.++.++.++++.+...+.+
T Consensus       137 ~~~-----~~~~~SA~~~~~i~~~f~~i~~~~~~  165 (168)
T cd04177         137 GNV-----PFYETSARKRTNVDEVFIDLVRQIIC  165 (168)
T ss_pred             CCc-----eEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            111     12346778889999999988765543

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.61  E-value=9.5e-15  Score=108.55  Aligned_cols=164  Identities=19%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+++++|+.|+|||||++.+.+....    .....|...........++  ..+.++||||...           +....
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~   65 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYP----TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE-----------FDKLR   65 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeeeeEEEEECCEEEEEEEEECCCChh-----------hcccc
Confidence            37899999999999999999876542    2223333221111111223  4578999999422           22222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccC-CchHHHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHEC-PKPLKEIL  173 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~-~~~~~~~~  173 (228)
                      ......+|+++++++.+++-|....  .++..+......   .|++++.||+|+...  ..+ ..+..... .-...+..
T Consensus        66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~  140 (173)
T cd04130          66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPK---APIILVGTQADLRTD--VNVLIQLARYGEKPVSQSRAK  140 (173)
T ss_pred             ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEeeChhhccC--hhHHHHHhhcCCCCcCHHHHH
Confidence            3345688999999999866565543  455555543222   389999999998643  221 11111100 00111222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                      ..+....  ....+..||.++.+++++++.+.
T Consensus       141 ~~a~~~~--~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         141 ALAEKIG--ACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             HHHHHhC--CCeEEEEeCCCCCCHHHHHHHHH
Confidence            2221100  00123457778899999987653

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.60  E-value=3.2e-14  Score=104.78  Aligned_cols=160  Identities=17%  Similarity=0.171  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+++|++|+|||||++.+++...  .+  ....+...........++  ..+.++||||......      ......  
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~--~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   68 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRF--IG--EYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLERS--   68 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcc--cc--ccCCChHHhceEEEEECCEEEEEEEEECCCCccccc------chHHHH--
Confidence            489999999999999999886543  11  112222111111111233  3478999999653110      111222  


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                        .+.+|++++++|+++.-|.... .++..+..........|++++.||+|....  +.+...       ....+.+...
T Consensus        69 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~~  137 (165)
T cd04146          69 --IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASELG  137 (165)
T ss_pred             --HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHcC
Confidence              2356999999999866555543 345555543210112489999999997543  222110       1112222222


Q ss_pred             CeEEEeeCCCcccccch-HHHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGT-EQVRQLLSLVNSVIV  209 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~  209 (228)
                      ..+      +..|+.++ .+++++++.+.+.+.
T Consensus       138 ~~~------~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         138 CLF------FEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             CEE------EEeCCCCCchhHHHHHHHHHHHHh
Confidence            111      23455666 489999998876553

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.60  E-value=3.3e-14  Score=112.19  Aligned_cols=171  Identities=19%  Similarity=0.176  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      -|+++|-+++||||||+.++..+.   ....++.||-.+....... .+..+.+.|.||+.+....-.-+..++.+.++.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            378999999999999999998764   4567788888877766554 455699999999999888777777788887775


Q ss_pred             ccCCccEEEEEEeCCCC---CCHHHHHHHH-HHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090          100 AKDGIHAFLVVFSVTNR---FSQEEETAVH-RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~---~s~~~~~~l~-~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      +    .++++++|++..   -...+.+.+. .+.+.-..-..||.++|+||+|.... .++++...+.        +.+.
T Consensus       238 t----~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~--------l~~~  304 (369)
T COG0536         238 T----RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKA--------LAEA  304 (369)
T ss_pred             h----heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHH--------HHHh
Confidence            5    889999999721   1133334333 33332122234689999999995443 0344333332        3333


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      +......+     .|+.+++++++|...+.+++.+..
T Consensus       305 ~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         305 LGWEVFYL-----ISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             cCCCccee-----eehhcccCHHHHHHHHHHHHHHhh
Confidence            33322221     577788899999988888877753

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.60  E-value=2.6e-14  Score=113.46  Aligned_cols=149  Identities=23%  Similarity=0.317  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccC------CCCCcceeeEeEeeee-eCC--cEEEEEeCCCCCCCCCCcHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~------~~~~~t~~~~~~~~~~-~~~--~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .+|+|+|.+|+|||||||+|++........      .....+.......... .++  ..+.++||||+++.......+ 
T Consensus         5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~-   83 (281)
T PF00735_consen    5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW-   83 (281)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH-
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh-
Confidence            689999999999999999999986533320      0111222222221111 122  358999999999865433222 


Q ss_pred             HHHHHHH--------hh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           91 KEIVKCL--------GM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        91 ~~~~~~~--------~~---------~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      +.+..++        ..         ...++|++||+++.+ .+++..+.+.|+.+...    .  ++|-|++|+|....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccCH
Confidence            2222222        11         124789999999986 57888888877666544    3  78889999999988


Q ss_pred             chhhHHHHhhccCCchHHHHHHhcCCeEEE
Q 027090          153 HEKTLEDFLGHECPKPLKEILQLCDNRCVL  182 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
                        +++..+...     +.+.++..+-.++.
T Consensus       158 --~el~~~k~~-----i~~~l~~~~I~~f~  180 (281)
T PF00735_consen  158 --EELQAFKQR-----IREDLEENNIKIFD  180 (281)
T ss_dssp             --HHHHHHHHH-----HHHHHHHTT--S--
T ss_pred             --HHHHHHHHH-----HHHHHHHcCceeec
Confidence              888877776     55555554444433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04148 RGK RGK subfamily

Probab=99.60  E-value=5.1e-14  Score=108.66  Aligned_cols=158  Identities=20%  Similarity=0.110  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce--eeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+++|++|+|||||++.+++......   ....+.  +....... ......+.++||||...      .. .   .  
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~-~---~--   66 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGEYDDH---AYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------WT-E---D--   66 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCcCcc---CcCCCccccceEEEEEECCEEEEEEEEeCCCcch------HH-H---h--
Confidence            799999999999999999976544201   111111  11111111 11334588999999540      10 1   1  


Q ss_pred             hhccC-CccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           98 GMAKD-GIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        98 ~~~~~-~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                       .... .+|++++|++++++-|.... +++..+.... .....|+++|.||+|+...  +.+....       ...+...
T Consensus        67 -~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~--~~v~~~~-------~~~~a~~  135 (221)
T cd04148          67 -SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS--REVSVQE-------GRACAVV  135 (221)
T ss_pred             -HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc--ceecHHH-------HHHHHHH
Confidence             1223 77999999999865555433 3444444432 1122489999999998654  3322110       1122222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+..      .+..||.++.+++++++.+.+.+..
T Consensus       136 ~~~~------~~e~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         136 FDCK------FIETSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             cCCe------EEEecCCCCCCHHHHHHHHHHHHHh
Confidence            1111      2345777889999999999887763

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.60  E-value=5.6e-14  Score=122.18  Aligned_cols=166  Identities=18%  Similarity=0.181  Sum_probs=106.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      +|+++|+.++|||||+++|+|...-. ......+.|.+....... ..+..+.++|+||.           +.+...+..
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~-~~~~~v~~iDtPGh-----------e~f~~~~~~   69 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFP-LPDYRLGFIDVPGH-----------EKFISNAIA   69 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEE-eCCEEEEEEECCCH-----------HHHHHHHHh
Confidence            79999999999999999999854210 111233455555443333 34577899999992           233444444


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+|++++|++++++........+.++.. .+-+   ++++++||+|....  ..+....+.     ++++.......
T Consensus        70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~---~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~~  138 (581)
T TIGR00475        70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIP---HTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIFL  138 (581)
T ss_pred             hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCCC
Confidence            5567899999999987666666666665543 2322   49999999999765  544433333     33333322100


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                        .....++.|+.++.+++++.+.+...+...
T Consensus       139 --~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       139 --KNAKIFKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             --CCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence              001234557778899999999888877664

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.60  E-value=2.1e-14  Score=112.03  Aligned_cols=162  Identities=20%  Similarity=0.187  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcE-EEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .++++|-+++|||||+|+|+..+.   .+..+..||-.+......++... +++.|.||+......+.-...++.+.++.
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKp---kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKP---KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCC---cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            578999999999999999998764   45667778777666655455443 99999999999888888777778777765


Q ss_pred             ccCCccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090          100 AKDGIHAFLVVFSVTNR--FSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~--~s~~~-~~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      +    +.++||+|.+..  .+..+ .+.|..-...... -..+|.++|.||+|..+.- ...   +        +++.+.
T Consensus       275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-~~~---l--------~~L~~~  338 (366)
T KOG1489|consen  275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-KNL---L--------SSLAKR  338 (366)
T ss_pred             h----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-HHH---H--------HHHHHH
Confidence            5    899999999843  13333 2332222222222 2335899999999985320 111   2        223333


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ....     ..++.+|.+++++.+|++.|..
T Consensus       339 lq~~-----~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  339 LQNP-----HVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             cCCC-----cEEEeeeccccchHHHHHHHhh
Confidence            3222     2355677788999999887754

>cd00157 Rho Rho (Ras homology) family

Probab=99.60  E-value=1.2e-14  Score=107.49  Aligned_cols=162  Identities=18%  Similarity=0.080  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|||||||+++|++......    ...+...........  ....+.++||||.....           ...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~   65 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTE----YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLR   65 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccc
Confidence            3799999999999999999998865211    112221111111112  23458999999955321           111


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhh----ccCCchHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HECPKPLKE  171 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~----~~~~~~~~~  171 (228)
                      ....+.+|+++++++.++.-+...  ..++..+.....   ..|+++++||+|....  ......+.    ........+
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~  140 (171)
T cd00157          66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK  140 (171)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence            123357799999999985444433  234555544433   2489999999998765  33221100    000001112


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      +......     ...+..|+.++.++.++++.|.+
T Consensus       141 ~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         141 LAKEIGA-----IGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             HHHHhCC-----eEEEEeecCCCCCHHHHHHHHhh
Confidence            2222211     02234466677899999988764

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.60  E-value=5.6e-15  Score=114.32  Aligned_cols=167  Identities=14%  Similarity=0.025  Sum_probs=105.7

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCC---CCC--------cceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSG--------VTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~---~~~--------~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   82 (228)
                      ..-+++..++|+||||||||||+++|+|...+..|.-   ..+        ......+..........+.+.|.--++..
T Consensus        23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~  102 (258)
T COG1120          23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY  102 (258)
T ss_pred             EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence            3445678999999999999999999999877555411   100        11112222222222334666676433322


Q ss_pred             CC------CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           83 SA------GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        83 ~~------~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                      +.      ..++-.+.+..++...    +..-+..+.-..+|+|++|++.+++++..++   ++++   |.|++|.... 
T Consensus       103 p~~~~~~~~~~~D~~~v~~aL~~~----~~~~la~r~~~~LSGGerQrv~iArALaQ~~---~iLLLDEPTs~LDi~~Q-  174 (258)
T COG1120         103 PHLGLFGRPSKEDEEIVEEALELL----GLEHLADRPVDELSGGERQRVLIARALAQET---PILLLDEPTSHLDIAHQ-  174 (258)
T ss_pred             cccccccCCCHhHHHHHHHHHHHh----CcHHHhcCcccccChhHHHHHHHHHHHhcCC---CEEEeCCCccccCHHHH-
Confidence            21      1111001222233221    2222222333589999999999999999888   4666   9999999877 


Q ss_pred             hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                       -++.+.++++.          .|+++...++|++.+.+.+|.+..
T Consensus       175 -~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a  219 (258)
T COG1120         175 -IEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA  219 (258)
T ss_pred             -HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence             77777666554          689999999999999999887654

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.60  E-value=1.9e-14  Score=105.18  Aligned_cols=156  Identities=14%  Similarity=0.084  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|..|||||||++++++... .    ....|......... .....+.++|+||....           .......
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~----~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-V----TTIPTIGFNVETVE-YKNVSFTVWDVGGQDKI-----------RPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-C----CCCCCcCcceEEEE-ECCEEEEEEECCCChhh-----------HHHHHHH
Confidence            589999999999999999998863 1    11222222222222 45667999999994321           1122233


Q ss_pred             cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ...+|++++++|+...-+.... .++..+..... ....|+++++||+|....  .......+.     +.... .....
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~-~~~~~  134 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEK-ILGRR  134 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhh-ccCCc
Confidence            4567999999999844233322 23333322211 112389999999998765  322221111     00000 01111


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      +    .....++.++.+++++++.|..
T Consensus       135 ~----~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         135 W----HIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             E----EEEEeeCCCCCCHHHHHHHHhh
Confidence            1    1233466777899999887653

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.60  E-value=2.8e-14  Score=111.68  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+++|..|+|||||++.+++.....    ....|+..........++  ..+.++||+|....           .....
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~~----~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~-----------~~~~~   66 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFEE----QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF-----------PAMRR   66 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCCC----CCCCChhHhEEEEEEECCEEEEEEEEECCCChhh-----------hHHHH
Confidence            79999999999999999998765421    223333211111111233  45789999994321           11112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhC-------ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFG-------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~-------~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ......|++++|+++++.-|..... +++.+.....       .....|++++.||+|+...  ..+.  ..     .+.
T Consensus        67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~--~~-----ei~  137 (247)
T cd04143          67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQ--RD-----EVE  137 (247)
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccC--HH-----HHH
Confidence            2345679999999998665655443 4444433210       1123489999999998643  2211  00     122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +....... +    ..+..||.++.+++++++.|..+..-
T Consensus       138 ~~~~~~~~-~----~~~evSAktg~gI~elf~~L~~~~~~  172 (247)
T cd04143         138 QLVGGDEN-C----AYFEVSAKKNSNLDEMFRALFSLAKL  172 (247)
T ss_pred             HHHHhcCC-C----EEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence            22211110 1    12345777889999999999876643

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04129 Rho2 Rho2 subfamily

Probab=99.59  E-value=1.8e-14  Score=108.42  Aligned_cols=167  Identities=16%  Similarity=0.094  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+++|+|++|+|||||++.+.......    ....|............+  ..+.++||||......           ..
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-----------~~   66 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPE----EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER-----------LR   66 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCcccceEEEEEEECCEEEEEEEEECCCChhccc-----------cc
Confidence            489999999999999999998554321    112222222211111222  3478999999543211           11


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh-hccC-CchHHHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL-GHEC-PKPLKEIL  173 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~-~~~~-~~~~~~~~  173 (228)
                      ......+++++++++++..-+....  .|+..+.....+   .|++++.||+|+.... ....... ...- ......+.
T Consensus        67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  142 (187)
T cd04129          67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA  142 (187)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence            1233577999999999855555543  366666654333   3899999999975420 1110000 0000 00111222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +..+..     ..+..||.++.+++++++.+.+.+..
T Consensus       143 ~~~~~~-----~~~e~Sa~~~~~v~~~f~~l~~~~~~  174 (187)
T cd04129         143 KEIGAK-----KYMECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             HHhCCc-----EEEEccCCCCCCHHHHHHHHHHHHhc
Confidence            222111     12345788899999999988766554

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.59  E-value=2.6e-14  Score=109.31  Aligned_cols=115  Identities=13%  Similarity=0.125  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEeEeeeeeCCcEE
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV   71 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   71 (228)
                      +|+|+|+.|+|||||+++|+...-....                             ......|.+...... ...+..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-~~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF-STPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE-ecCCceE
Confidence            5899999999999999999754321000                             001233443333332 2466789


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (228)
Q Consensus        72 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~  151 (228)
                      .++||||..           ++...+......+|++++|+|+..+..........++.. .+.+   ++++++||+|...
T Consensus        80 ~liDTpG~~-----------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~---~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHE-----------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIR---HVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHH-----------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCC---cEEEEEEchhccc
Confidence            999999942           222222233457899999999986665555544444432 2322   5788999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=6.2e-14  Score=102.02  Aligned_cols=161  Identities=18%  Similarity=0.181  Sum_probs=111.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+++++|..++||||||+..+-..+  ......++..++...... ..+.  .+++|||+|            +|.++++
T Consensus        23 ~KlVflGdqsVGKTslItRf~yd~f--d~~YqATIGiDFlskt~~-l~d~~vrLQlWDTAG------------QERFrsl   87 (221)
T KOG0094|consen   23 YKLVFLGDQSVGKTSLITRFMYDKF--DNTYQATIGIDFLSKTMY-LEDRTVRLQLWDTAG------------QERFRSL   87 (221)
T ss_pred             EEEEEEccCccchHHHHHHHHHhhh--cccccceeeeEEEEEEEE-EcCcEEEEEEEeccc------------HHHHhhh
Confidence            6899999999999999999986655  223333445555554443 3333  589999999            5655554


Q ss_pred             -hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           98 -GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        98 -~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                       ....+++.+++.|+|++++-|.+.. +|++-++..-+... -.++||.||.|+...  +++...-..       ...+.
T Consensus        88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dk--rqvs~eEg~-------~kAke  157 (221)
T KOG0094|consen   88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDK--RQVSIEEGE-------RKAKE  157 (221)
T ss_pred             hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccch--hhhhHHHHH-------HHHHH
Confidence             4667899999999999989898865 68888887755431 146668899999876  655432111       22222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .+.   .+   +..+|..+.++.+|+.+|..++++.
T Consensus       158 l~a---~f---~etsak~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  158 LNA---EF---IETSAKAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             hCc---EE---EEecccCCCCHHHHHHHHHHhccCc
Confidence            222   11   2346778899999999998888764

>COG2262 HflX GTPases [General function prediction only]

Probab=99.58  E-value=7.7e-14  Score=112.79  Aligned_cols=165  Identities=22%  Similarity=0.176  Sum_probs=104.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .-..|+++|-+++|||||+|+|++...+....  ...|.+.........+++.+.+-||-||....-      ..+..+.
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~--LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP------~~LV~AF  262 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQ--LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLP------HPLVEAF  262 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeecccc--ccccccCceeEEEeCCCceEEEecCccCcccCC------hHHHHHH
Confidence            34689999999999999999999987643321  122322222333334577899999999986532      2232222


Q ss_pred             h---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           98 G---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        98 ~---~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .   .....+|+++.|+|++++......+...-+..-++-.. .|+++|+||+|....  ......           +..
T Consensus       263 ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~-~p~i~v~NKiD~~~~--~~~~~~-----------~~~  328 (411)
T COG2262         263 KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE-IPIILVLNKIDLLED--EEILAE-----------LER  328 (411)
T ss_pred             HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC-CCEEEEEecccccCc--hhhhhh-----------hhh
Confidence            2   23457899999999996633333333333333332221 489999999998866  432111           111


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ...       ..+..||.++.+++.|.+.|.+.++..
T Consensus       329 ~~~-------~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         329 GSP-------NPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             cCC-------CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            111       234567888899999999999988853

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.57  E-value=1.7e-13  Score=118.78  Aligned_cols=162  Identities=16%  Similarity=0.186  Sum_probs=98.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...+|+++|+.++|||||+++|.+.......  ....|...........+...+.++||||..+.           ...+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r  152 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR  152 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence            4468999999999999999999987652221  22344444444333223337999999995432           2223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ......+|++++|++++.+........+..+...   .  .|+++++||+|......+.+...+..     .........
T Consensus       153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~---~--vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~  222 (587)
T TIGR00487       153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA---N--VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG  222 (587)
T ss_pred             HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence            3345678999999999866666665555443321   2  27999999999864311333333322     100000000


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ..    ...++.||.++.++++|++.|..
T Consensus       223 ~~----~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       223 GD----TIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             CC----ceEEEEECCCCCChHHHHHhhhh
Confidence            00    01245688899999999998854

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=2.8e-14  Score=103.68  Aligned_cols=161  Identities=25%  Similarity=0.291  Sum_probs=105.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ..+++|+|.+++|||||+-.+.-...    ......|+........ ...+  ..+.+|||.|            +|..+
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F----~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG------------QERy~   68 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQF----HENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG------------QERYH   68 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCcc----ccccccccccEEEEEEEEeCCcEEEEEEEEcCC------------ccccc
Confidence            46899999999999999977764443    1112333333322221 1222  3577999999            33333


Q ss_pred             HH-hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           96 CL-GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        96 ~~-~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .+ ...+++++++|+|+|+++.-|.... .|++.++...++..  .+.|+.||+|+...  +++.          +++..
T Consensus        69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~--R~V~----------~~ea~  134 (200)
T KOG0092|consen   69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLER--REVE----------FEEAQ  134 (200)
T ss_pred             ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhc--cccc----------HHHHH
Confidence            33 3567899999999999977777664 48888887765321  23348899999875  4443          34444


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      .+++..-.++..   .||+++.|+.+++..|.+.+++..
T Consensus       135 ~yAe~~gll~~E---TSAKTg~Nv~~if~~Ia~~lp~~~  170 (200)
T KOG0092|consen  135 AYAESQGLLFFE---TSAKTGENVNEIFQAIAEKLPCSD  170 (200)
T ss_pred             HHHHhcCCEEEE---EecccccCHHHHHHHHHHhccCcc
Confidence            454444333322   377888999999999988888753

>CHL00071 tufA elongation factor Tu

Probab=99.56  E-value=1.6e-13  Score=115.04  Aligned_cols=139  Identities=16%  Similarity=0.234  Sum_probs=87.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   81 (228)
                      .++..+|+++|+.++|||||+++|++......              .......|.+....... .++..+.++||||.. 
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~-   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA-   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChH-
Confidence            34458999999999999999999987521100              01113344443332222 345668899999932 


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~  161 (228)
                                ++...+......+|++++++|+..+....+...+.++... +.+   ++++++||+|....  .+..+.+
T Consensus        87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~~---~iIvvvNK~D~~~~--~~~~~~~  150 (409)
T CHL00071         87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GVP---NIVVFLNKEDQVDD--EELLELV  150 (409)
T ss_pred             ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEccCCCCH--HHHHHHH
Confidence                      2333333334577999999999877888777777766543 322   37789999999764  4444333


Q ss_pred             hccCCchHHHHHHhc
Q 027090          162 GHECPKPLKEILQLC  176 (228)
Q Consensus       162 ~~~~~~~~~~~~~~~  176 (228)
                      .+    .+.+.++.+
T Consensus       151 ~~----~l~~~l~~~  161 (409)
T CHL00071        151 EL----EVRELLSKY  161 (409)
T ss_pred             HH----HHHHHHHHh
Confidence            32    255555443

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.56  E-value=1.5e-13  Score=121.09  Aligned_cols=165  Identities=15%  Similarity=0.186  Sum_probs=100.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee---CCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      +...+|+|+|+.++|||||+++|.+.......  .+..|.....+.....   ....+.++||||..           .+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F  308 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AF  308 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHH-----------HH
Confidence            34569999999999999999999876552221  1233333332222211   34679999999932           23


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ...+......+|++++|++++++........+..+...   .  .|+++++||+|........+...+..     ...+.
T Consensus       309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~---~--iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~  378 (742)
T CHL00189        309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA---N--VPIIVAINKIDKANANTERIKQQLAK-----YNLIP  378 (742)
T ss_pred             HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc---C--ceEEEEEECCCccccCHHHHHHHHHH-----hccch
Confidence            33333344577999999999877776666665554331   2  27999999999865311222222221     00001


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      +.....    ...+..||.++.++++|++.|....
T Consensus       379 e~~g~~----vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        379 EKWGGD----TPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             HhhCCC----ceEEEEECCCCCCHHHHHHhhhhhh
Confidence            111110    1234568888899999999887654

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.56  E-value=8.5e-13  Score=100.16  Aligned_cols=117  Identities=19%  Similarity=0.186  Sum_probs=76.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeeee------eCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVL------KDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~------~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      +|+++|.+|+|||||++.+++.....    ....|.....  .....      .....+.++||+|-.           +
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~----~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e-----------~   66 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLG----RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE-----------S   66 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCC----CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch-----------h
Confidence            79999999999999999999876522    2223332211  11111      122358999999932           2


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC-----------------ccccccEEEEEeCCCCCcc
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~-----------------~~~~~~~llv~~~~D~~~~  152 (228)
                      +.......++.+|++++|+|++++-|.... .|+..+.....                 ....-|++||.||+|+...
T Consensus        67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            233334456788999999999977777665 46666654311                 0112389999999998654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.55  E-value=2.2e-13  Score=113.80  Aligned_cols=167  Identities=18%  Similarity=0.242  Sum_probs=98.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   82 (228)
                      ++..+|+++|+.++|||||+++|++.....              ........|.+....... .++..+.++||||..  
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~--   86 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHA--   86 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHH--
Confidence            445899999999999999999998621100              001123445444333222 345578999999942  


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhh
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~  162 (228)
                               ++...+......+|++++++++..+....+.+.+.++... +.+   .+++++||+|....  .+..+.+.
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-gi~---~iivvvNK~Dl~~~--~~~~~~~~  151 (396)
T PRK12735         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD--EELLELVE  151 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEecCCcch--HHHHHHHH
Confidence                     3334444445578999999999876777766666655432 322   35568999998754  44333332


Q ss_pred             ccCCchHHHHHHhcCC---eEEEeeCCCcccccch----------HHHHHHHHHHHHHHH
Q 027090          163 HECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV  209 (228)
Q Consensus       163 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~~l~~~i~~~~~  209 (228)
                      .    .+..+.+....   .+.+    ++.|+.++          .++.+|++.+...++
T Consensus       152 ~----ei~~~l~~~~~~~~~~~i----i~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        152 M----EVRELLSKYDFPGDDTPI----IRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             H----HHHHHHHHcCCCcCceeE----EecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            1    14444443321   0111    12222222          256889998888765

>cd01892 Miro2 Miro2 subfamily

Probab=99.55  E-value=1.6e-13  Score=101.60  Aligned_cols=160  Identities=13%  Similarity=-0.033  Sum_probs=91.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      +..+++++|.+|+|||||++.+++....   ......|....  ..... ..+  ..+.++|++|-....          
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~---~~~~~~T~~~~~~~~~~~-~~~~~~~l~~~d~~g~~~~~----------   68 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFS---LNAYSPTIKPRYAVNTVE-VYGQEKYLILREVGEDEVAI----------   68 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCC---cccCCCccCcceEEEEEE-ECCeEEEEEEEecCCccccc----------
Confidence            4578999999999999999999987652   02223333221  11111 223  357788999843221          


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                       ......+..+|++++++|++++-+....  .++... +......|++++.||+|+...  ....  ..     ...++.
T Consensus        69 -~~~~~~~~~~d~~llv~d~~~~~s~~~~--~~~~~~-~~~~~~~p~iiv~NK~Dl~~~--~~~~--~~-----~~~~~~  135 (169)
T cd01892          69 -LLNDAELAACDVACLVYDSSDPKSFSYC--AEVYKK-YFMLGEIPCLFVAAKADLDEQ--QQRY--EV-----QPDEFC  135 (169)
T ss_pred             -ccchhhhhcCCEEEEEEeCCCHHHHHHH--HHHHHH-hccCCCCeEEEEEEccccccc--cccc--cc-----CHHHHH
Confidence             1111224578999999999754333322  122222 111112489999999998643  2210  00     122222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      +....     ...+..||.++.+++++++.+.+++.
T Consensus       136 ~~~~~-----~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         136 RKLGL-----PPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             HHcCC-----CCCEEEEeccCccHHHHHHHHHHHhh
Confidence            22111     11245577788899999998887664

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.9e-13  Score=101.08  Aligned_cols=161  Identities=19%  Similarity=0.164  Sum_probs=108.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHH-H
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI-V   94 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~-~   94 (228)
                      ...+++++|.+|||||.++-.+.....  ......++.++.....+. .++.  .+++|||.|            ++. .
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~f--~~~~~sTiGIDFk~kti~-l~g~~i~lQiWDtaG------------Qerf~   75 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDSF--NTSFISTIGIDFKIKTIE-LDGKKIKLQIWDTAG------------QERFR   75 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhccC--cCCccceEEEEEEEEEEE-eCCeEEEEEEEEccc------------chhHH
Confidence            347999999999999999999987654  222223444444444444 2333  489999999            333 3


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ......+++++.+++|+|+++.-|.+.. .|++.+........  +.+||.||+|....  +.+...       .-+.+.
T Consensus        76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~~e-------~ge~lA  144 (207)
T KOG0078|consen   76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVSKE-------RGEALA  144 (207)
T ss_pred             HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--ccccHH-------HHHHHH
Confidence            3444566788999999999977777764 48999998877665  89999999998865  444321       122333


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...+-   .|   ...||+++.|+.+.+-.+.+.+..
T Consensus       145 ~e~G~---~F---~EtSAk~~~NI~eaF~~La~~i~~  175 (207)
T KOG0078|consen  145 REYGI---KF---FETSAKTNFNIEEAFLSLARDILQ  175 (207)
T ss_pred             HHhCC---eE---EEccccCCCCHHHHHHHHHHHHHh
Confidence            33221   11   234777889999988776665553

>PRK12736 elongation factor Tu; Reviewed

Probab=99.55  E-value=3.1e-13  Score=112.78  Aligned_cols=172  Identities=16%  Similarity=0.198  Sum_probs=102.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   81 (228)
                      .++..+|+++|+.++|||||+++|++.....              ........|.+....... .+...+.++||||.. 
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~-   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHA-   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHH-
Confidence            3445899999999999999999998742100              001123455544333222 345678999999932 


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~  161 (228)
                                ++...+......+|++++|+++..+....+...+.++... +.+   ++++++||+|....  +++.+.+
T Consensus        87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~~---~~IvviNK~D~~~~--~~~~~~i  150 (394)
T PRK12736         87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YLVVFLNKVDLVDD--EELLELV  150 (394)
T ss_pred             ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---EEEEEEEecCCcch--HHHHHHH
Confidence                      3333333334577999999999877777777777776544 322   37789999998754  4444333


Q ss_pred             hccCCchHHHHHHhcCCeEEEeeCCCcccccch--------HHHHHHHHHHHHHHHh
Q 027090          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~i~~~~~~  210 (228)
                      ..    .+++++....... -....++.|+.++        .++.+|++.+.+.++.
T Consensus       151 ~~----~i~~~l~~~~~~~-~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~  202 (394)
T PRK12736        151 EM----EVRELLSEYDFPG-DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT  202 (394)
T ss_pred             HH----HHHHHHHHhCCCc-CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence            21    2444444332100 0001122233332        2578899988887763

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.55  E-value=6.7e-14  Score=104.16  Aligned_cols=161  Identities=15%  Similarity=0.099  Sum_probs=97.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ++..+|+++|+.||||||+++.|.......     ..+|...+..... .++..+.++|.+|-.           .+...
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~-~~~~~~~~~d~gG~~-----------~~~~~   74 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIK-YKGYSLTIWDLGGQE-----------SFRPL   74 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEE-ETTEEEEEEEESSSG-----------GGGGG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceee-eCcEEEEEEeccccc-----------ccccc
Confidence            566899999999999999999998765422     2233333433333 567789999999921           12233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .......+|+++||+|.++.-...+..  +.+..++..+  ...|+++++||.|....  ....+....+.-+.+   . 
T Consensus        75 w~~y~~~~~~iIfVvDssd~~~l~e~~--~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l---~-  146 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDPERLQEAK--EELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKL---K-  146 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGGGGHHHHH--HHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGT---T-
T ss_pred             ceeeccccceeEEEEecccceeecccc--cchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhc---c-
Confidence            444556889999999998432222221  2222333322  12489999999998654  333332222111111   1 


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                       .+..+.++    ..++.++.++.|.+++|.+.
T Consensus       147 -~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  147 -NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             -SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred             -cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence             13344443    33566779999999998765

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.55  E-value=2.2e-15  Score=110.65  Aligned_cols=170  Identities=18%  Similarity=0.191  Sum_probs=113.4

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      .+...+.+..++++|+||+||||+++.|.+...|.+|    .++.+.....  ........-.+.+--|+++..+..+.+
T Consensus        21 VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G----~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl   96 (245)
T COG4555          21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG----KVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENL   96 (245)
T ss_pred             eeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCc----eEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHH
Confidence            4445667889999999999999999999988876555    3333221110  000112222344777777766555443


Q ss_pred             HHHHHHHHhhccC----CccEEEEEEeCC-------CCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCccchhh
Q 027090           90 GKEIVKCLGMAKD----GIHAFLVVFSVT-------NRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLEDHEKT  156 (228)
Q Consensus        90 ~~~~~~~~~~~~~----~~~~il~v~~~~-------~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~~~~~~  156 (228)
                       ..+.+.......    ++..+.-.+.+.       ..+|.++++++.+++++.++|.  .+++  |.|.+|....  ..
T Consensus        97 -~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~--i~vlDEP~sGLDi~~~--r~  171 (245)
T COG4555          97 -KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPS--ILVLDEPTSGLDIRTR--RK  171 (245)
T ss_pred             -HHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC--eEEEcCCCCCccHHHH--HH
Confidence             333333221110    111111111111       4799999999999999999985  3444  8899999988  88


Q ss_pred             HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      +.+++.+.+         +|.++++...|+..++++.|.+...
T Consensus       172 ~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~  214 (245)
T COG4555         172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE  214 (245)
T ss_pred             HHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence            988888776         7999999999999999999987654

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.54  E-value=5.6e-13  Score=102.79  Aligned_cols=165  Identities=19%  Similarity=0.111  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccc-ccCCC-----------CCcceeeE--eE---------------------eeee
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGS-----------SGVTKTCE--MK---------------------TTVL   65 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~-----------~~~t~~~~--~~---------------------~~~~   65 (228)
                      +|+++|+.++|||||++.++...... .+...           ...|....  ..                     ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            58999999999999999998532211 00000           00110000  00                     1111


Q ss_pred             eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe
Q 027090           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (228)
Q Consensus        66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~  145 (228)
                      ..+..+.++||||...       ..+.....+.  ...+|.+++++++..+.+..+...+.++... +    .|+++++|
T Consensus        81 ~~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivvvN  146 (224)
T cd04165          81 KSSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVVVT  146 (224)
T ss_pred             eCCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEE
Confidence            3356789999999432       1122222211  1367999999999888888888888877654 2    26899999


Q ss_pred             CCCCCccchhhHHHHhhccCCchHHHHHHhcCCe--------------------EEEeeCCCcccccchHHHHHHHHHHH
Q 027090          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR--------------------CVLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       146 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                      |+|....  ..+...++.     +.+.+......                    +-..-+.+..|+.++.++++|.+.|.
T Consensus       147 K~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         147 KIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             CccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            9998765  555555544     33333211000                    00011233457888899999988775


Q ss_pred             H
Q 027090          206 S  206 (228)
Q Consensus       206 ~  206 (228)
                      .
T Consensus       220 ~  220 (224)
T cd04165         220 L  220 (224)
T ss_pred             h
Confidence            4

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.53  E-value=5.9e-13  Score=106.27  Aligned_cols=151  Identities=26%  Similarity=0.386  Sum_probs=100.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc------CCCCCcceeeEeEeeeee-CC--cEEEEEeCCCCCCCCCCcH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE   87 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~------~~~~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~~~~   87 (228)
                      .-..+|.++|++|+|||||+|.|++.......      ......+........... ++  ..+.++||||+++...-..
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            44579999999999999999999998442221      111223333333322222 22  3589999999998875443


Q ss_pred             HHHHHHHHH--------Hh----------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCC
Q 027090           88 FVGKEIVKC--------LG----------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (228)
Q Consensus        88 ~~~~~~~~~--------~~----------~~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D  148 (228)
                      .+ +-+..+        +.          ....++|++||++..+ .+++.-+...|+.+...    .  ++|-|+.|+|
T Consensus       101 ~w-e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~----v--NlIPVI~KaD  173 (373)
T COG5019         101 CW-EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR----V--NLIPVIAKAD  173 (373)
T ss_pred             cH-HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc----c--Ceeeeeeccc
Confidence            32 222222        21          1224789999999876 67888888776666544    2  7888999999


Q ss_pred             CCccchhhHHHHhhccCCchHHHHHHhcCCeEE
Q 027090          149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
                      ....  .++..+.+.     +.+.+..++-.++
T Consensus       174 ~lT~--~El~~~K~~-----I~~~i~~~nI~vf  199 (373)
T COG5019         174 TLTD--DELAEFKER-----IREDLEQYNIPVF  199 (373)
T ss_pred             cCCH--HHHHHHHHH-----HHHHHHHhCCcee
Confidence            9988  888887777     6666666554444

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.53  E-value=6e-13  Score=100.95  Aligned_cols=152  Identities=14%  Similarity=0.051  Sum_probs=93.0

Q ss_pred             EcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--ee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc
Q 027090           25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK  101 (228)
Q Consensus        25 ~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (228)
                      +|..|||||||++.++....    ......|........  .. .....+.++||+|-.           .+.......+
T Consensus         1 vG~~~vGKTsLi~r~~~~~f----~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e-----------~~~~l~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE-----------KFGGLRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhhhHHHh
Confidence            69999999999999986544    112233432222211  11 123468999999932           2223333455


Q ss_pred             CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090          102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (228)
Q Consensus       102 ~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
                      ..++++++|+|++++.|.... .|+..+..... .  .|++||.||+|+...  ....+.        . .+.+...  +
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~--~v~~~~--------~-~~~~~~~--~  129 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDVKDR--KVKAKS--------I-TFHRKKN--L  129 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccccc--cCCHHH--------H-HHHHHcC--C
Confidence            678999999999976666554 46666665432 2  289999999998543  211111        1 1112111  1


Q ss_pred             EEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .    .+..||.++.++.++++.+.+.+.+.
T Consensus       130 ~----~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      130 Q----YYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             E----EEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            1    13457788899999999998777654

Ran is involved in the active transport of proteins through nuclear pores.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.53  E-value=2.7e-13  Score=120.39  Aligned_cols=161  Identities=14%  Similarity=0.157  Sum_probs=99.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      -..+|+|+|+.++|||||+++|.+..+....  ....|.....+... +++..+.++||||..+.           ...+
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F-----------~~m~  354 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVE-TNGGKITFLDTPGHEAF-----------TAMR  354 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEE-ECCEEEEEEECCCCccc-----------hhHH
Confidence            3468999999999999999999876652211  22344444444433 45677999999996542           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ......+|++++|++++++........+..+...   .  .|+++++||+|+.......+...+..     ...+.+...
T Consensus       355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~---~--vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g  424 (787)
T PRK05306        355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA---G--VPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG  424 (787)
T ss_pred             HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc---C--CcEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence            2334567999999999877766666655544332   2  27999999999864311222222221     000011111


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ..    ...++.||.++.++++|++.|..
T Consensus       425 ~~----vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        425 GD----TIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             CC----ceEEEEeCCCCCCchHHHHhhhh
Confidence            10    11244688889999999998864

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=4.9e-13  Score=107.48  Aligned_cols=157  Identities=21%  Similarity=0.277  Sum_probs=100.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-----cCCCCCcceeeEeEeeeee-CC--cEEEEEeCCCCCCCCCCcH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE   87 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~~~~   87 (228)
                      .....++.++|++|.|||||||+|++......     .......|........... ++  ..++++||||+++...-..
T Consensus        18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence            34457899999999999999999998854221     0111111333333222212 22  3589999999998764432


Q ss_pred             H-------HHHHHHHHHhh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090           88 F-------VGKEIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (228)
Q Consensus        88 ~-------~~~~~~~~~~~---------~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~  150 (228)
                      .       +...+..++..         ...++|++||++..+ .++..-+...++.+...    .  ++|-|+.|+|..
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~----v--NiIPVI~KaD~l  171 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK----V--NLIPVIAKADTL  171 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc----c--cccceeeccccC
Confidence            2       22222233321         123899999999987 44888888766655443    3  688899999999


Q ss_pred             ccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeC
Q 027090          151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (228)
                      ..  .++..+.+.     +.+.+....-.++.|..
T Consensus       172 T~--~El~~~K~~-----I~~~i~~~nI~vf~fp~  199 (366)
T KOG2655|consen  172 TK--DELNQFKKR-----IRQDIEEHNIKVFDFPT  199 (366)
T ss_pred             CH--HHHHHHHHH-----HHHHHHHcCcceecCCC
Confidence            88  888887777     66666655555444433

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.52  E-value=4.2e-14  Score=114.17  Aligned_cols=164  Identities=18%  Similarity=0.158  Sum_probs=104.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      -+++.+++|+|+||||||||+++|+|...+.+|    .+.........  ........++.+.|+++...+..+.+ ..+
T Consensus        30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G----~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l-~~~  104 (306)
T PRK13537         30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG----SISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENL-LVF  104 (306)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHH-HHH
Confidence            356779999999999999999999998775444    22222111100  00112335667777776544433332 111


Q ss_pred             HHHHhhc----cCCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           94 VKCLGMA----KDGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        94 ~~~~~~~----~~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                      .......    ...++.++-.++.       ...+|.|+++++.++++++.+|.   +++   |++.+|....  .++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~---lllLDEPt~gLD~~~~--~~l~~  179 (306)
T PRK13537        105 GRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD---VLVLDEPTTGLDPQAR--HLMWE  179 (306)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC---EEEEeCCCcCCCHHHH--HHHHH
Confidence            1110000    0001111111111       14799999999999999999884   555   9999999887  88888


Q ss_pred             HhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          160 FLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       160 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .++++.         +|++.++.+.|++++++.+|.+..
T Consensus       180 ~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~  218 (306)
T PRK13537        180 RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA  218 (306)
T ss_pred             HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            877653         899999999999999998887643

>PLN03127 Elongation factor Tu; Provisional

Probab=99.52  E-value=5.2e-13  Score=112.63  Aligned_cols=170  Identities=16%  Similarity=0.189  Sum_probs=100.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc------------c--ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAF------------K--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~------------~--~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   81 (228)
                      .++..+|+++|+.++|||||+++|++....            .  ........|.+....... .++..+.++||||..+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCccc
Confidence            455588999999999999999999743100            0  001123455555444332 3456789999999642


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~  161 (228)
                                 +...+......+|++++++++..+....+++.+.++... +.+   .+++++||+|....  .+..+.+
T Consensus       137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gip---~iIvviNKiDlv~~--~~~~~~i  199 (447)
T PLN03127        137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GVP---SLVVFLNKVDVVDD--EELLELV  199 (447)
T ss_pred             -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEeeccCCH--HHHHHHH
Confidence                       122222222358999999999877777777777776543 322   36778999998754  4444433


Q ss_pred             hccCCchHHHHHHhcCC-----eEEEeeCCCcccccc-------hHHHHHHHHHHHHHHHh
Q 027090          162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKG-------TEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~~l~~~i~~~~~~  210 (228)
                      ..    .++++...+..     .++.....   ++.+       ...+.+|++.+.+.++.
T Consensus       200 ~~----~i~~~l~~~~~~~~~vpiip~Sa~---sa~~g~n~~~~~~~i~~Ll~~l~~~lp~  253 (447)
T PLN03127        200 EM----ELRELLSFYKFPGDEIPIIRGSAL---SALQGTNDEIGKNAILKLMDAVDEYIPE  253 (447)
T ss_pred             HH----HHHHHHHHhCCCCCcceEEEeccc---eeecCCCcccccchHHHHHHHHHHhCCC
Confidence            31    24444443321     12111111   1111       23478888988887753

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.52  E-value=3.5e-13  Score=98.67  Aligned_cols=152  Identities=20%  Similarity=0.195  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+++|++|+|||||++.+........    ...+ ..........++  ..+.++||+|...         .   .+  
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~---------~---~~--   62 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYVQL----ESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD---------A---QF--   62 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCC----CCCC-ccceEEEEEECCEEEEEEEEECCCCCc---------h---hH--
Confidence            799999999999999998765543211    1111 111111112333  3488999999532         1   11  


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                        ....|++++|+|.+++-|... ..+++.+...... ...|++++.||.|+.....+.+...       ...++.+...
T Consensus        63 --~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~-------~~~~~~~~~~  132 (158)
T cd04103          63 --ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDA-------RARQLCADMK  132 (158)
T ss_pred             --HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHH-------HHHHHHHHhC
Confidence              235699999999998888877 4566666654321 1238999999999743210222211       0112222111


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      . +    ..+..||.++.+++++++.+.+
T Consensus       133 ~-~----~~~e~SAk~~~~i~~~f~~~~~  156 (158)
T cd04103         133 R-C----SYYETCATYGLNVERVFQEAAQ  156 (158)
T ss_pred             C-C----cEEEEecCCCCCHHHHHHHHHh
Confidence            1 1    1124578888999999987754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.52  E-value=1.7e-13  Score=114.73  Aligned_cols=168  Identities=14%  Similarity=0.136  Sum_probs=97.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe----------------eee---------eCCcEE
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT----------------TVL---------KDGQVV   71 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~----------------~~~---------~~~~~~   71 (228)
                      +..+|+++|..++|||||+++|++...... .......|.......                ...         .....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            457899999999999999999987532110 000112222211100                000         013568


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (228)
Q Consensus        72 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~  150 (228)
                      .++||||..           ++...+......+|++++++|++.+. .....+.+..+.. .+.   +++++++||+|..
T Consensus        83 ~liDtPGh~-----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~  147 (406)
T TIGR03680        83 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV  147 (406)
T ss_pred             EEEECCCHH-----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence            999999932           22233333334679999999998665 4455555554432 232   3689999999987


Q ss_pred             ccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..  ++.....++     +.++....   ....-..++.|+.++.++++|++.|...++.
T Consensus       148 ~~--~~~~~~~~~-----i~~~l~~~---~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       148 SK--EKALENYEE-----IKEFVKGT---VAENAPIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             CH--HHHHHHHHH-----HHhhhhhc---ccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence            64  443322222     22222211   0000123456777889999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK09866 hypothetical protein; Provisional

Probab=99.52  E-value=3.9e-13  Score=114.84  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=73.3

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCC
Q 027090           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (228)
Q Consensus        70 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~  149 (228)
                      .+.++||||+......  .+.+....    ....+|+++|++++....+..+...++.+... ++  ..|+++|+||+|.
T Consensus       231 QIIFVDTPGIhk~~~~--~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKIDl  301 (741)
T PRK09866        231 QLTLLDTPGPNEAGQP--HLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFDQ  301 (741)
T ss_pred             CEEEEECCCCCCccch--HHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEcccC
Confidence            3688999999864321  12222222    45577999999999866888888777766543 22  1279999999998


Q ss_pred             CccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ..+...........     +.......   ...+...++.||.++.++++|++.|..
T Consensus       302 ~dreeddkE~Lle~-----V~~~L~q~---~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        302 QDRNSDDADQVRAL-----ISGTLMKG---CITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCcccchHHHHHHH-----HHHHHHhc---CCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            64310112221111     11111111   112445567788899999999987765

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.51  E-value=1.9e-13  Score=104.25  Aligned_cols=157  Identities=17%  Similarity=0.100  Sum_probs=94.1

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC---------
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS---------   83 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~---------   83 (228)
                      ...-.++..|+|+|++|||||||+|.|.|...+.+|    .+.......  .........+++.+-+..=.         
T Consensus        23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G----~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~   96 (248)
T COG1116          23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVALG   96 (248)
T ss_pred             eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCccc--CCCCCCEEEEeccCcccchhhHHhhheeh
Confidence            344566789999999999999999999999886655    222221111  00111122233332221110         


Q ss_pred             -----CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           84 -----AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        84 -----~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                           ....+.......++...    ..-=+--.....+|+|++|++.+++++...|.   +++   ||..+|...+  .
T Consensus        97 l~~~~~~~~e~~~~a~~~L~~V----gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~---lLLlDEPFgALDalTR--~  167 (248)
T COG1116          97 LELRGKSKAEARERAKELLELV----GLAGFEDKYPHQLSGGMRQRVAIARALATRPK---LLLLDEPFGALDALTR--E  167 (248)
T ss_pred             hhccccchHhHHHHHHHHHHHc----CCcchhhcCccccChHHHHHHHHHHHHhcCCC---EEEEcCCcchhhHHHH--H
Confidence                 11111111122222211    11111112225799999999999999998884   666   9999998877  6


Q ss_pred             hHHHHhhccC----------CchHHHHHHhcCCeEEEee
Q 027090          156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  184 (228)
                      .+.+.+.+..          +|++++.+..+++++++-+
T Consensus       168 ~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~  206 (248)
T COG1116         168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN  206 (248)
T ss_pred             HHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence            6555444433          8999999999998888766

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.51  E-value=4.7e-14  Score=108.73  Aligned_cols=162  Identities=17%  Similarity=0.123  Sum_probs=98.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC---CCcc-----eeeEeEeee--eeCCcEEEEEeCC------
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---SGVT-----KTCEMKTTV--LKDGQVVNVIDTP------   77 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~---~~~t-----~~~~~~~~~--~~~~~~~~~iDtp------   77 (228)
                      ..-+++..++|+||||+|||||+++|+|...+..|...   ...+     ....+....  .....++++.|.-      
T Consensus        25 l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~  104 (254)
T COG1121          25 LSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG  104 (254)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence            34456679999999999999999999997775555211   1100     111121110  0112233333332      


Q ss_pred             --CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           78 --GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        78 --G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                        |+.......+  .+.+.++++..    ...=+.-+--..+|+|++|++-++++++.+|.   +++   |++.+|....
T Consensus       105 ~~g~~~~~~~~d--~~~v~~aL~~V----gm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~---lllLDEP~~gvD~~~~  175 (254)
T COG1121         105 KKGWFRRLNKKD--KEKVDEALERV----GMEDLRDRQIGELSGGQKQRVLLARALAQNPD---LLLLDEPFTGVDVAGQ  175 (254)
T ss_pred             cccccccccHHH--HHHHHHHHHHc----CchhhhCCcccccCcHHHHHHHHHHHhccCCC---EEEecCCcccCCHHHH
Confidence              2222111111  12333333211    11112222225899999999999999999885   555   9999999877


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  186 (228)
                        ..+.+.+++++         +|++..+.+.|+.++++....
T Consensus       176 --~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~  216 (254)
T COG1121         176 --KEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHL  216 (254)
T ss_pred             --HHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCee
Confidence              77777777665         799999999999988875443

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.51  E-value=5e-13  Score=96.92  Aligned_cols=154  Identities=19%  Similarity=0.203  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|.+|+|||||+++|++...+...  ....+......... .++  ..+.++|+||..+..        .   ..
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~--------~---~~   67 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEY--KPGTTRNYVTTVIE-EDGKTYKFNLLDTAGQEDYR--------A---IR   67 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcC--CCCceeeeeEEEEE-ECCEEEEEEEEECCCcccch--------H---HH
Confidence            58999999999999999999988742221  11222222222122 344  568899999943321        1   11


Q ss_pred             hhccCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           98 GMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~---~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .......+.++.+++....   +......+...+......  ..|+++++||+|....  . ......        ....
T Consensus        68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~~~~--------~~~~  134 (161)
T TIGR00231        68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKTHVA--------FLFA  134 (161)
T ss_pred             HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhHHHH--------HHHh
Confidence            1111233555555555422   122222333334333321  2389999999999764  3 111111        1111


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN  205 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~  205 (228)
                      ....     ...++.++..+.++.++++.|.
T Consensus       135 ~~~~-----~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       135 KLNG-----EPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             hccC-----CceEEeecCCCCCHHHHHHHhh
Confidence            1111     1234556677788999888764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.51  E-value=8e-14  Score=113.87  Aligned_cols=164  Identities=20%  Similarity=0.173  Sum_probs=104.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+.........  .........+.+.+.++...+..+.. ..+
T Consensus        64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G----~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l-~~~  138 (340)
T PRK13536         64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAG----KITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENL-LVF  138 (340)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce----EEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHH-HHH
Confidence            356789999999999999999999998775544    22222211100  00122334566777765544333322 111


Q ss_pred             HHHHhhc----cCCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           94 VKCLGMA----KDGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        94 ~~~~~~~----~~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                      .......    ...++.++-.+++       ...+|.|+++++.++.+++.+|.   +++   |++.+|....  .++.+
T Consensus       139 ~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~---lLiLDEPt~gLD~~~r--~~l~~  213 (340)
T PRK13536        139 GRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ---LLILDEPTTGLDPHAR--HLIWE  213 (340)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC---EEEEECCCCCCCHHHH--HHHHH
Confidence            1110000    0001111111111       14799999999999999999884   555   9999999888  88888


Q ss_pred             HhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          160 FLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       160 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.++.         +|.+.++.+.|++++++.+|.+..
T Consensus       214 ~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~  252 (340)
T PRK13536        214 RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA  252 (340)
T ss_pred             HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            887653         799999999999999998887653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.51  E-value=5e-14  Score=113.68  Aligned_cols=164  Identities=12%  Similarity=0.034  Sum_probs=101.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--eeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      .-.++.+++|+|+||||||||+++|+|...+.+|    .+..........  ........+.+.+.++...+..+.+ ..
T Consensus        15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l-~~   89 (302)
T TIGR01188        15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL-EM   89 (302)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHH-HH
Confidence            3356789999999999999999999998765444    222221111000  0111223456666665543332222 11


Q ss_pred             HHHHH-----------hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           93 IVKCL-----------GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        93 ~~~~~-----------~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                      .....           .......+.--..-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~gLD~~~~--~~l~  164 (302)
T TIGR01188        90 MGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD---VLFLDEPTTGLDPRTR--RAIW  164 (302)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH--HHHH
Confidence            00000           000000110000011114799999999999999999884   555   9999999877  7887


Q ss_pred             HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+++..         +|.+.++.+.|++.+++.+|.+.
T Consensus       165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~  203 (302)
T TIGR01188       165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII  203 (302)
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence            7776543         89999999999999999888764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.51  E-value=3.9e-13  Score=112.61  Aligned_cols=170  Identities=13%  Similarity=0.137  Sum_probs=98.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEe----------------ee-eeC--------Cc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKT----------------TV-LKD--------GQ   69 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~----------------~~-~~~--------~~   69 (228)
                      .++..+|+++|+.++|||||+.+|++..... ........|.......                .. ..+        ..
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            4455899999999999999999998742100 0111123333322100                00 000        24


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCC
Q 027090           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (228)
Q Consensus        70 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D  148 (228)
                      .+.++||||.           .++...+......+|++++++|+..+. .......+..+.. .+.   +++++++||+|
T Consensus        86 ~i~liDtPG~-----------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~D  150 (411)
T PRK04000         86 RVSFVDAPGH-----------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKID  150 (411)
T ss_pred             EEEEEECCCH-----------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeec
Confidence            6899999992           222222323334679999999998655 4555555544432 222   36889999999


Q ss_pred             CCccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +...  .+.....+.     +..+.+..   .......++.||.++.++++|++.|...+++
T Consensus       151 l~~~--~~~~~~~~~-----i~~~l~~~---~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        151 LVSK--ERALENYEQ-----IKEFVKGT---VAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             cccc--hhHHHHHHH-----HHHHhccc---cCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            8765  443322222     22222211   0001122456778889999999999887654

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.51  E-value=2.3e-12  Score=99.08  Aligned_cols=160  Identities=14%  Similarity=0.051  Sum_probs=89.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHH-HhCCCcccccCCCCCcceeeEeEeee---eeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNS-ILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~-l~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .....+|+++|++|||||||++. +.|...     ..+..|.........   ......+.++||+|-..          
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~----------   70 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFE-----KKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK----------   70 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCC-----CCCCCccceEEEEEEEEECCeEEEEEEEECCCchh----------
Confidence            33447999999999999999965 554421     111222222221111   11234688999999322          


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                       +...........++++++++++++.|.... .++..+.....+   .|++++.||+|....  ....+.+         
T Consensus        71 -~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~i~lv~nK~Dl~~~--~~~~~~~---------  135 (215)
T PTZ00132         71 -FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCEN---IPIVLVGNKVDVKDR--QVKARQI---------  135 (215)
T ss_pred             -hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECccCccc--cCCHHHH---------
Confidence             111122233466999999999866666554 345555443322   378889999997543  2111111         


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .+.+.....+      ...|+.++.++++.+..|.+.+..+
T Consensus       136 ~~~~~~~~~~------~e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        136 TFHRKKNLQY------YDISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             HHHHHcCCEE------EEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            1122211111      2345566677888887776666553

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.51  E-value=2.1e-13  Score=115.15  Aligned_cols=120  Identities=20%  Similarity=0.244  Sum_probs=77.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccC---------------CCCCcceeeEeEeeeee
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA---------------GSSGVTKTCEMKTTVLK   66 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~---------------~~~~~t~~~~~~~~~~~   66 (228)
                      .++..+|+++|+.++|||||+++|+...-..              .+.               .....|.+....... .
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~   81 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-T   81 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-c
Confidence            4556899999999999999999998432100              010               023445554443333 4


Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~s~~~~~~l~~~~~~~~~~~~~~~llv~  144 (228)
                      ++..+.++||||..+.           ...+......+|++++|+|+.+  .........+.++.. .+.+   ++++++
T Consensus        82 ~~~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~---~iivvi  146 (425)
T PRK12317         82 DKYYFTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGIN---QLIVAI  146 (425)
T ss_pred             CCeEEEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCC---eEEEEE
Confidence            5678999999995321           1112222357899999999986  565656665555543 2322   688999


Q ss_pred             eCCCCCc
Q 027090          145 TGGDDLE  151 (228)
Q Consensus       145 ~~~D~~~  151 (228)
                      ||+|...
T Consensus       147 NK~Dl~~  153 (425)
T PRK12317        147 NKMDAVN  153 (425)
T ss_pred             Ecccccc
Confidence            9999864

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.50  E-value=1.7e-12  Score=108.43  Aligned_cols=121  Identities=17%  Similarity=0.230  Sum_probs=78.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc------c------c--ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA------F------K--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~------~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   81 (228)
                      .++..+|+++|+.++|||||+++|++...      .      .  ........|.+....... .++..+.++||||.. 
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~-   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA-   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchH-
Confidence            45558999999999999999999984311      0      0  001113455554333322 345568999999943 


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                                ++...+......+|++++++++..+....+.+.+.++... +.+   ++++++||+|....
T Consensus        87 ----------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi~---~iIvvvNK~Dl~~~  143 (394)
T TIGR00485        87 ----------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD  143 (394)
T ss_pred             ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEecccCCH
Confidence                      2222222333477999999999877777777777766543 322   46678999998754

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=3.1e-13  Score=111.15  Aligned_cols=135  Identities=16%  Similarity=0.123  Sum_probs=90.7

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .....+..|+|+|++++|||||+|+|+....  +.+++.+.|+..........++.++++.||+|+.+.....-+. --+
T Consensus       263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~-~gI  339 (531)
T KOG1191|consen  263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEA-LGI  339 (531)
T ss_pred             HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHH-HhH
Confidence            3445678999999999999999999998876  5666777788777666666889999999999998832221110 111


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hCcc----ccccEEEEEeCCCCCcc
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL---FGKN----VFDYMIVVFTGGDDLED  152 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~---~~~~----~~~~~llv~~~~D~~~~  152 (228)
                      .++. .....+|++++++++....+..+....+.+...   +...    .+++++++.||.|....
T Consensus       340 ~rA~-k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  340 ERAR-KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHHH-HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            1221 234577999999999644444444433333322   1111    12578889999998754

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.50  E-value=3.7e-14  Score=102.69  Aligned_cols=167  Identities=16%  Similarity=0.172  Sum_probs=103.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC---CCCCcceeeEeEeee--eeCCc----EEEEEeCCCCCCCCCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGVTKTCEMKTTV--LKDGQ----VVNVIDTPGLFDLSAG   85 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~---~~~~~t~~~~~~~~~--~~~~~----~~~~iDtpG~~~~~~~   85 (228)
                      .-+.+.+++|+|++|+|||||+|.|.|-..|.+|.   ...+.|....+....  ..+..    .+.+...-|++-.+..
T Consensus        21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L  100 (231)
T COG3840          21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL  100 (231)
T ss_pred             eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence            34556899999999999999999999988766652   111222111111000  00011    1233333444433321


Q ss_pred             -cHHHHHHHHH-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090           86 -SEFVGKEIVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        86 -~~~~~~~~~~-~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~  160 (228)
                       .....++... .....  +...  +.-+....+|+++++++.+++.+.+..   |+++   ||..+|..-+  .++...
T Consensus       101 kL~a~~r~~v~~aa~~v--Gl~~--~~~RLP~~LSGGqRQRvALARclvR~~---PilLLDEPFsALdP~LR--~eMl~L  171 (231)
T COG3840         101 KLNAEQREKVEAAAAQV--GLAG--FLKRLPGELSGGQRQRVALARCLVREQ---PILLLDEPFSALDPALR--AEMLAL  171 (231)
T ss_pred             ccCHHHHHHHHHHHHHh--Chhh--HhhhCccccCchHHHHHHHHHHHhccC---CeEEecCchhhcCHHHH--HHHHHH
Confidence             1111122111 11111  1111  223334679999999999999998776   7777   9999998877  777777


Q ss_pred             hhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          161 LGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       161 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      +.+.+          +|..+++.+..+..+++.+|++...
T Consensus       172 v~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~  211 (231)
T COG3840         172 VSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQ  211 (231)
T ss_pred             HHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEee
Confidence            77665          8999999999999999999987654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.50  E-value=3.5e-13  Score=117.41  Aligned_cols=153  Identities=17%  Similarity=0.190  Sum_probs=90.2

Q ss_pred             cCCCCCHHHHHHHHhCCCcccccCCCCC-cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCc
Q 027090           26 GRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGI  104 (228)
Q Consensus        26 G~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (228)
                      |.+|+|||||+|+|+|... ..  .+.+ .|.+..... ...++..+.++||||..+.......  +.+.+.. ...+.+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v--~n~pG~Tv~~~~~~-i~~~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~-l~~~~a   73 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TV--GNWPGVTVEKKEGK-LGFQGEDIEIVDLPGIYSLTTFSLE--EEVARDY-LLNEKP   73 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-ee--cCCCCeEEEEEEEE-EEECCeEEEEEECCCccccCccchH--HHHHHHH-HhhcCC
Confidence            8999999999999999864 22  2223 333332222 2245667899999998775432211  1222211 112467


Q ss_pred             cEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEee
Q 027090          105 HAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       105 ~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (228)
                      |++++++|++ .+..    .+.+........  .|+++++||+|..+.  ..+...        .+++.+..+-      
T Consensus        74 DvvI~VvDat-~ler----~l~l~~ql~~~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~------  130 (591)
T TIGR00437        74 DLVVNVVDAS-NLER----NLYLTLQLLELG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGV------  130 (591)
T ss_pred             CEEEEEecCC-cchh----hHHHHHHHHhcC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCC------
Confidence            9999999997 3322    222222222222  389999999998654  332211        2223333221      


Q ss_pred             CCCcccccchHHHHHHHHHHHHHH
Q 027090          185 NKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       185 ~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ..++.||.++.+++++++.+.+..
T Consensus       131 pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       131 PVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            234567778899999999887653

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.50  E-value=1.1e-12  Score=109.50  Aligned_cols=170  Identities=17%  Similarity=0.194  Sum_probs=99.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   82 (228)
                      ++..+|+++|+.++|||||+++|++.....              ........|.+....... .++..+.++||||..  
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~--   86 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHA--   86 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHH--
Confidence            445899999999999999999998732100              000123445444333222 345678999999942  


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEE-EEEeCCCCCccchhhHHHHh
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~l-lv~~~~D~~~~~~~~~~~~~  161 (228)
                               ++...+......+|++++++|+..+....++..+.++... +.    |.+ +++||+|....  .+..+.+
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~--~~~~~~~  150 (396)
T PRK00049         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD--EELLELV  150 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch--HHHHHHH
Confidence                     3333344445688999999999877777777777766543 32    454 68999998754  4433323


Q ss_pred             hccCCchHHHHHHhcCC-----eEEEeeCCCcc--cccch--HHHHHHHHHHHHHHH
Q 027090          162 GHECPKPLKEILQLCDN-----RCVLFDNKTKD--EAKGT--EQVRQLLSLVNSVIV  209 (228)
Q Consensus       162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~--~~~~~l~~~i~~~~~  209 (228)
                      ..    .+.++...+..     .++...+....  +....  .++.+|++.|...++
T Consensus       151 ~~----~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        151 EM----EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HH----HHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            21    14444443321     22222222110  00011  256788888888764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.50  E-value=1.1e-13  Score=108.50  Aligned_cols=95  Identities=19%  Similarity=0.308  Sum_probs=69.5

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      ....+..-+++++|.+.+|||||+|.|++..   +.+..++.|+.........+++-.++++|+||+...........++
T Consensus        57 ~V~KsGda~v~lVGfPsvGKStLL~~LTnt~---seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~  133 (365)
T COG1163          57 AVKKSGDATVALVGFPSVGKSTLLNKLTNTK---SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQ  133 (365)
T ss_pred             eEeccCCeEEEEEcCCCccHHHHHHHHhCCC---ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcce
Confidence            3344555799999999999999999999976   4566778887777767677889999999999998766544322222


Q ss_pred             HHHHHhhccCCccEEEEEEeCC
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVT  114 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~  114 (228)
                      +.    ...+.+|++++|+|+.
T Consensus       134 vl----sv~R~ADlIiiVld~~  151 (365)
T COG1163         134 VL----SVARNADLIIIVLDVF  151 (365)
T ss_pred             ee----eeeccCCEEEEEEecC
Confidence            22    2334567777777765

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.50  E-value=9.2e-13  Score=104.31  Aligned_cols=115  Identities=21%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh---CCCcccc-------------cCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090           21 TVVLLGRTGNGKSATGNSIL---GRKAFKA-------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   84 (228)
                      +|+++|+.|+|||||+++|+   |......             .......|......... +++..+.++||||..+.  
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df--   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDF--   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHH--
Confidence            58999999999999999996   3211100             01122334433333332 56778999999996541  


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                           ..+...    ....+|++++|+++..+....+...++.+... +    +|+++++||+|....
T Consensus        78 -----~~~~~~----~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a  131 (270)
T cd01886          78 -----TIEVER----SLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGA  131 (270)
T ss_pred             -----HHHHHH----HHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence                 123333    33456999999999877777777666655432 2    278899999998643

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.50  E-value=2e-13  Score=98.42  Aligned_cols=171  Identities=17%  Similarity=0.145  Sum_probs=106.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ..-.+|.++|.+|+|||||+|.+...+..  ......+..+........ .....++++||.|            ++.+.
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~--~qykaTIgadFltKev~Vd~~~vtlQiWDTAG------------QERFq   72 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFS--QQYKATIGADFLTKEVQVDDRSVTLQIWDTAG------------QERFQ   72 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHH--HHhccccchhheeeEEEEcCeEEEEEEEeccc------------HHHhh
Confidence            44579999999999999999999887652  212222222222222111 1223489999999            56555


Q ss_pred             HHh-hccCCccEEEEEEeCCCCCCHHHHH-HH-HHH-HHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           96 CLG-MAKDGIHAFLVVFSVTNRFSQEEET-AV-HRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        96 ~~~-~~~~~~~~il~v~~~~~~~s~~~~~-~l-~~~-~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      .+. ..++++|+.+++.++...-|++... |- +.+ ++...+|...|.+|+.||+|......+.+.          .+.
T Consensus        73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS----------~~~  142 (210)
T KOG0394|consen   73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS----------EKK  142 (210)
T ss_pred             hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee----------HHH
Confidence            554 5679999999999998666666543 22 222 222345566799999999998653111111          233


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      ..+.|...-  .-+....||+...|+.+.++.+.+....++.
T Consensus       143 Aq~WC~s~g--nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  143 AQTWCKSKG--NIPYFETSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             HHHHHHhcC--CceeEEecccccccHHHHHHHHHHHHHhccc
Confidence            344444321  0112335777789999999888777766553

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.49  E-value=1.2e-12  Score=113.91  Aligned_cols=115  Identities=17%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc-c-ccc------------CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKA-F-KAS------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG   85 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~-~-~~~------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~   85 (228)
                      ++|+|+|+.++|||||+++|+...- + ..+            ......|........ .+++..+.++||||..+    
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v-~~~~~kinlIDTPGh~D----   76 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI-RYNGTKINIVDTPGHAD----   76 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE-EECCEEEEEEECCCHHH----
Confidence            5899999999999999999974311 1 000            011234544443333 36778899999999543    


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (228)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~  151 (228)
                             +...+......+|++++++++..+.....+.++..+...   ..  |.++++||+|...
T Consensus        77 -------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~i--p~IVviNKiD~~~  130 (594)
T TIGR01394        77 -------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---GL--KPIVVINKIDRPS  130 (594)
T ss_pred             -------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---CC--CEEEEEECCCCCC
Confidence                   222233333466999999999877766777777666542   22  6889999999854

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.49  E-value=1.5e-13  Score=110.93  Aligned_cols=163  Identities=18%  Similarity=0.172  Sum_probs=103.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--eeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+..........  .......++.+.|.++...+..+.+ ....
T Consensus        26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G----~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l-~~~~  100 (301)
T TIGR03522        26 QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG----SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYL-QFIA  100 (301)
T ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHH-HHHH
Confidence            56789999999999999999999998765444    222222111000  0112235566667665543333322 1111


Q ss_pred             HHHhhc----cCCccEEEE-------EEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090           95 KCLGMA----KDGIHAFLV-------VFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        95 ~~~~~~----~~~~~~il~-------v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~  160 (228)
                      ......    ...++.++-       .-.....+|.|+++++.++++++++|.   +++   |++.+|....  .++.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~---lliLDEPt~gLD~~~~--~~l~~~  175 (301)
T TIGR03522       101 GIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK---VLILDEPTTGLDPNQL--VEIRNV  175 (301)
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHH
Confidence            100000    000111111       111125799999999999999999884   555   9999999887  888887


Q ss_pred             hhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          161 LGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       161 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ++...        +|.+.++.+.|++.+++.++.+..
T Consensus       176 l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~  212 (301)
T TIGR03522       176 IKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA  212 (301)
T ss_pred             HHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            77763        899999999999999998887653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.48  E-value=2.3e-13  Score=112.04  Aligned_cols=139  Identities=18%  Similarity=0.226  Sum_probs=101.2

Q ss_pred             ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      ..++..++..+++|+|-+++|||||+|.++...+   .+.++..|+..-..+...+....++++||||+.+....+.+.+
T Consensus       160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I  236 (620)
T KOG1490|consen  160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII  236 (620)
T ss_pred             cCCCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence            3566677889999999999999999999987765   4566777877766666667777899999999999876655543


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCC--CCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHH
Q 027090           91 KEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (228)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~--~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~  159 (228)
                      +...  +....+--.+++|+.|+++  +.|-.++ +..+.+..+|.+.   |+|+|+||+|....  +.+..
T Consensus       237 Emqs--ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~~  301 (620)
T KOG1490|consen  237 EMQI--ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLDQ  301 (620)
T ss_pred             HHHH--HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccCH
Confidence            3322  1222233467899999984  3444443 4666777777665   79999999999877  55543

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.48  E-value=2.1e-13  Score=105.30  Aligned_cols=162  Identities=17%  Similarity=0.065  Sum_probs=96.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI--   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~--   93 (228)
                      -+++.+++|+|+||+|||||+++|+|...+.+|    .+........  ........+.+.|.+....+..+...-..  
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  100 (220)
T cd03293          27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLEL  100 (220)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECc--cccCcEEEEecccccccCCCHHHHHHHHHHH
Confidence            346679999999999999999999998764443    2222211110  01122334556665544332222211000  


Q ss_pred             --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090           94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~  162 (228)
                              ...........+.--+.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+.+.+.
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~---lllLDEPt~~LD~~~~--~~~~~~l~  175 (220)
T cd03293         101 QGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD---VLLLDEPFSALDALTR--EQLQEELL  175 (220)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEECCCCCCCCHHHH--HHHHHHHH
Confidence                    0000000011111001111125799999999999999998884   555   9999999877  77777665


Q ss_pred             cc----C------CchHHHHHHhcCCeEEEe--eCCCc
Q 027090          163 HE----C------PKPLKEILQLCDNRCVLF--DNKTK  188 (228)
Q Consensus       163 ~~----~------~~~~~~~~~~~~~~~~~~--~~~~~  188 (228)
                      +.    .      +|....+...|+..+++.  ++.+.
T Consensus       176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~  213 (220)
T cd03293         176 DIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV  213 (220)
T ss_pred             HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE
Confidence            43    1      688888888899888887  46543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.48  E-value=9.4e-13  Score=99.60  Aligned_cols=169  Identities=12%  Similarity=-0.005  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCCHHHHHH-HHhCCCccccc-CCCCCccee--eEeE-e---------eeeeCCcEEEEEeCCCCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS-AGSSGVTKT--CEMK-T---------TVLKDGQVVNVIDTPGLFDLSAG   85 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin-~l~g~~~~~~~-~~~~~~t~~--~~~~-~---------~~~~~~~~~~~iDtpG~~~~~~~   85 (228)
                      .+|+++|..|+|||||+. .+.+....... .....+|+.  ..+. .         ........+.++||+|...    
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~----   78 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD----   78 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence            589999999999999996 55443221000 112233331  0110 0         0111234589999999432    


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHH-----
Q 027090           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-----  158 (228)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~-----  158 (228)
                               ......++.+|++++|++.+++.|....  .|+..+......   .|+++|.||+|+.........     
T Consensus        79 ---------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~---~piilvgNK~DL~~~~~~~~~~~~~~  146 (195)
T cd01873          79 ---------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR---VPVILVGCKLDLRYADLDEVNRARRP  146 (195)
T ss_pred             ---------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCC---CCEEEEEEchhccccccchhhhcccc
Confidence                     1112356789999999999978787765  366666554322   289999999998532000000     


Q ss_pred             --HHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          159 --DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                        ......+.-...+..+.+...-+.   .+..||.++.+++++++.+.++
T Consensus       147 ~~~~~~~~~~V~~~e~~~~a~~~~~~---~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         147 LARPIKNADILPPETGRAVAKELGIP---YYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             cccccccCCccCHHHHHHHHHHhCCE---EEEcCCCCCCCHHHHHHHHHHh
Confidence              000000000112222222221111   2345888889999999877653

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.48  E-value=2e-14  Score=110.64  Aligned_cols=159  Identities=17%  Similarity=0.182  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-----e--eeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-----T--VLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-----~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      ...+++|++|+|||||||+|.|...+..|.    +........     .  ...+.+.-++++..-++.+.+...++.--
T Consensus        25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~----I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG  100 (352)
T COG4148          25 GITALFGPSGSGKTSLINMIAGLTRPDEGR----IELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG  100 (352)
T ss_pred             ceEEEecCCCCChhhHHHHHhccCCccccE----EEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhh
Confidence            589999999999999999999998866552    222111111     0  11112234566665555444332221000


Q ss_pred             HHHHHhhccCCccEEE-------EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090           93 IVKCLGMAKDGIHAFL-------VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il-------~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~  162 (228)
                      ....   ....+|.++       +.-.....+|+|++|++.+.++++..|.   +++   |+.-+|....  +++.-|++
T Consensus       101 ~~~~---~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~---LLLmDEPLaSLD~~RK--~EilpylE  172 (352)
T COG4148         101 MWKS---MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPE---LLLMDEPLASLDLPRK--REILPYLE  172 (352)
T ss_pred             hccc---chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCC---eeeecCchhhcccchh--hHHHHHHH
Confidence            0000   001112111       1222336799999999999999998884   665   9999999888  89998888


Q ss_pred             ccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          163 HEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       163 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ++.          +|+++++.+.+++.+++-+|++..+
T Consensus       173 RL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~  210 (352)
T COG4148         173 RLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS  210 (352)
T ss_pred             HHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec
Confidence            876          8999999999999999999998765

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.48  E-value=1.6e-13  Score=105.64  Aligned_cols=158  Identities=14%  Similarity=0.116  Sum_probs=94.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+......... .     ........+.+.|.+....+..++.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l  101 (216)
T TIGR00960        26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG----KIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNV  101 (216)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHH
Confidence            356779999999999999999999998764443    22222111100 0     0011223455555554432222221


Q ss_pred             H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      .              +.+...+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|....
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~laral~~~p~---llllDEPt~~LD~~~~  174 (216)
T TIGR00960       102 AFPLRIIGVPPRDANERVSAALEKV--GLEG--KAHALPMQLSGGEQQRVAIARAIVHKPP---LLLADEPTGNLDPELS  174 (216)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCcCCHHHH
Confidence            1              0111111111  1110  1111125799999999999999998884   666   9999998877


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  186 (228)
                        ..+.+.+.+..         +|+...+...|+..+++.++.
T Consensus       175 --~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~  215 (216)
T TIGR00960       175 --RDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR  215 (216)
T ss_pred             --HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence              77777776542         688888777888777776654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.48  E-value=2.1e-13  Score=111.98  Aligned_cols=165  Identities=14%  Similarity=0.038  Sum_probs=105.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee---e----CCcEEEEEeCCCCCCCCCCcH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---K----DGQVVNVIDTPGLFDLSAGSE   87 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~----~~~~~~~iDtpG~~~~~~~~~   87 (228)
                      .-+++..++|+|+||||||||+++|+|...+.+|    .+...........   .    .....++++.++++...+..+
T Consensus        15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G----~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~e   90 (363)
T TIGR01186        15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG----QIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQ   90 (363)
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce----EEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHH
Confidence            3456789999999999999999999999875544    3332222111000   0    223456778888876554443


Q ss_pred             HHHHH----------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           88 FVGKE----------IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        88 ~~~~~----------~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                      ++.-.          ...........++.--+.-.....+|+|+++++.+++++..+|   +++|   |++.+|....  
T Consensus        91 Ni~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p---~iLLlDEP~saLD~~~r--  165 (363)
T TIGR01186        91 NTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEP---DILLMDEAFSALDPLIR--  165 (363)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCHHHH--
Confidence            32110          0000000011111111122222579999999999999999888   4666   9999999877  


Q ss_pred             hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .++.+.+..+.          +|++.++.+.|+.++++.++.+.
T Consensus       166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv  209 (363)
T TIGR01186       166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV  209 (363)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence            77776655331          79999999999999999888764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.47  E-value=2.3e-13  Score=106.09  Aligned_cols=161  Identities=17%  Similarity=0.171  Sum_probs=98.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee------eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT------VLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .-.++.+++|+|+||||||||+++|+|...+.+|    .++........      .........+.+.|.+....+..+.
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~   97 (235)
T cd03261          22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG----EVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFEN   97 (235)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHH
Confidence            3456789999999999999999999998765444    22222111100      0001112344555554432222211


Q ss_pred             HH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           89 VG---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        89 ~~---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      ..               ......+...  +...  +.-.....+|+|+++++.++++++.+|   ++++   |++.+|..
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~ia~al~~~p---~llllDEPt~~LD~~  170 (235)
T cd03261          98 VAFPLREHTRLSEEEIREIVLEKLEAV--GLRG--AEDLYPAELSGGMKKRVALARALALDP---ELLLYDEPTAGLDPI  170 (235)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHc--CCch--hhcCChhhCCHHHHHHHHHHHHHhcCC---CEEEecCCcccCCHH
Confidence            10               0011111111  1111  111112479999999999999999888   4666   99999998


Q ss_pred             ccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          151 EDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       151 ~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..  ..+.+.+++.    .      +|++..+...|+..+++.++.+.
T Consensus       171 ~~--~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~  216 (235)
T cd03261         171 AS--GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV  216 (235)
T ss_pred             HH--HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE
Confidence            77  7777766653    1      78999998999999888888764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.47  E-value=1.4e-12  Score=113.01  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--e---------------eCCcEEEEEeCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--L---------------KDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~---------------~~~~~~~~iDtpG~~~~   82 (228)
                      ..|+++|+.++|||||+|+|.+........  +..|.........  .               .....+.++||||... 
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~--ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~-   81 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREA--GGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA-   81 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccC--CceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence            379999999999999999999886522111  1222211111110  0               0012388999999422 


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~  151 (228)
                                +...+......+|++++|++++.+.+..+...+.++...   .  .|+++++||+|...
T Consensus        82 ----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~---~--vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        82 ----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY---K--TPFVVAANKIDRIP  135 (590)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc---C--CCEEEEEECCCccc
Confidence                      222233344578999999999877777766666655432   2  37999999999863

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.47  E-value=2.7e-13  Score=94.35  Aligned_cols=116  Identities=20%  Similarity=0.191  Sum_probs=64.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccc-cc-CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFK-AS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +|+|+|+.||||||||+.|++..... .. ......+....... .......+.++|++|.....       ......  
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~-------~~~~~~--   70 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIV-VDGDRQSLQFWDFGGQEEFY-------SQHQFF--   70 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEE-ETTEEEEEEEEEESSSHCHH-------CTSHHH--
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEE-ecCCceEEEEEecCccceec-------ccccch--
Confidence            68999999999999999999887531 11 11111222211111 11223347899999942211       111111  


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGD  148 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D  148 (228)
                        ....|++++++|+++.-|.... +++.++...-.....-|++++.||.|
T Consensus        71 --~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   71 --LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             --HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             --hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence              2356999999999855555543 23333443322112238999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.47  E-value=7.6e-15  Score=111.08  Aligned_cols=168  Identities=17%  Similarity=0.117  Sum_probs=101.8

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      +..-.++.+++++||||+|||||+|.|+|...|.+|    .+.........    ....-...+-++.+-++...+..++
T Consensus        24 sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G----~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlEN   99 (250)
T COG0411          24 SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG----TVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLEN   99 (250)
T ss_pred             eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCc----eEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHH
Confidence            334456789999999999999999999999886655    22222111110    0011122344455554444443333


Q ss_pred             HHHHHH------HHH---------hhccCCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090           89 VGKEIV------KCL---------GMAKDGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---V  143 (228)
Q Consensus        89 ~~~~~~------~~~---------~~~~~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v  143 (228)
                      ..--..      ..+         .....++..++..+..       ...+|.+++++++++++++.+|.   +++   |
T Consensus       100 v~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~---lLLLDEP  176 (250)
T COG0411         100 VAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPK---LLLLDEP  176 (250)
T ss_pred             HHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCC---EEEecCc
Confidence            211000      000         0000011111222222       25799999999999999998884   555   7


Q ss_pred             EeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          144 FTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       144 ~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ...+.....  .++.+.+.+.+          .|+++-+...|++++++..|.+..
T Consensus       177 aAGln~~e~--~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA  230 (250)
T COG0411         177 AAGLNPEET--EELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA  230 (250)
T ss_pred             cCCCCHHHH--HHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence            787777665  66666666554          689999999999999999888654

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.47  E-value=1.9e-12  Score=94.88  Aligned_cols=155  Identities=19%  Similarity=0.200  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce--eeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      +|+++|+.|+|||||++.+.+.....    ....|.  +....... .++  ..+.++|++|...           +...
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~~-----------~~~~   64 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPE----NYIPTIGIDSYSKEVS-IDGKPVNLEIWDTSGQER-----------FDSL   64 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTS----SSETTSSEEEEEEEEE-ETTEEEEEEEEEETTSGG-----------GHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccc----cccccccccccccccc-cccccccccccccccccc-----------cccc
Confidence            68999999999999999999876522    222232  22222222 223  3489999999321           1112


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      ........|+++++++.+++-|.... .|+..+........  |++++.||.|....  +.+..       ...+++.+.
T Consensus        65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~--~iivvg~K~D~~~~--~~v~~-------~~~~~~~~~  133 (162)
T PF00071_consen   65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDI--PIIVVGNKSDLSDE--REVSV-------EEAQEFAKE  133 (162)
T ss_dssp             HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTS--EEEEEEETTTGGGG--SSSCH-------HHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc--cceeeecccccccc--ccchh-------hHHHHHHHH
Confidence            22334577999999999866555554 46676666655222  89999999998753  22221       012334444


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ....++      ..++.++.++.+++..+.+.+
T Consensus       134 ~~~~~~------e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  134 LGVPYF------EVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTSEEE------EEBTTTTTTHHHHHHHHHHHH
T ss_pred             hCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence            332222      234556688999887766544

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.47  E-value=2.4e-13  Score=109.77  Aligned_cols=164  Identities=17%  Similarity=0.070  Sum_probs=100.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      .-+++.+++|+|+||||||||+++|+|...+.+|    .+.........  ........++.+.|.+....+..+.+. .
T Consensus        26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~-~  100 (303)
T TIGR01288        26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRG----KITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL-V  100 (303)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHH-H
Confidence            3456789999999999999999999998764444    22221111100  001122335556666554333222221 0


Q ss_pred             HHHHH-----------hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           93 IVKCL-----------GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        93 ~~~~~-----------~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                      .....           .........--..-.....+|+|+++++.++++++.+|.   +++   |++.+|....  ..+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~gLD~~~~--~~l~  175 (303)
T TIGR01288       101 FGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ---LLILDEPTTGLDPHAR--HLIW  175 (303)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH--HHHH
Confidence            00000           000000000000011114799999999999999998884   555   9999999877  8888


Q ss_pred             HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+..         +|++.++.+.|++.+++.+|.+.
T Consensus       176 ~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~  214 (303)
T TIGR01288       176 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI  214 (303)
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence            7776642         79999999999999999888754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.47  E-value=1.1e-12  Score=102.06  Aligned_cols=115  Identities=21%  Similarity=0.255  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccc--cc-CC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFK--AS-AG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~--~~-~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   84 (228)
                      +|+++|+.|+|||||+++|+...-..  .+ +.             ....+....... ..+++..+.++||||..+.  
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~-~~~~~~~i~liDTPG~~~f--   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVAS-FQWEDTKVNLIDTPGHMDF--   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEE-EEECCEEEEEEeCCCccch--
Confidence            58999999999999999997542100  00 00             111122222222 2356778999999997642  


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                           ..+...++    ..+|++++|+++..+.+.....+++.+...   .  .|+++++||+|....
T Consensus        78 -----~~~~~~~l----~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~---~--~P~iivvNK~D~~~a  131 (237)
T cd04168          78 -----IAEVERSL----SVLDGAILVISAVEGVQAQTRILWRLLRKL---N--IPTIIFVNKIDRAGA  131 (237)
T ss_pred             -----HHHHHHHH----HHhCeEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECccccCC
Confidence                 12333333    356999999999877777666666665432   2  278999999998754

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04169 RF3 RF3 subfamily

Probab=99.46  E-value=2.4e-12  Score=101.85  Aligned_cols=117  Identities=17%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcc--cccCC------------------CCCcceeeEeEeeeeeCCcEEEEEeCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAF--KASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTPG   78 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG   78 (228)
                      .++|+|+|+.|+|||||+++|+...-.  ..+..                  ....+....... ..+++..+.++||||
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~-~~~~~~~i~liDTPG   80 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQ-FEYRDCVINLLDTPG   80 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEE-EeeCCEEEEEEECCC
Confidence            378999999999999999999743110  01100                  011121122222 235677899999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ..+.       ..+....+    ..+|++++|+++..+.......+++.+...   .  .|+++++||+|....
T Consensus        81 ~~df-------~~~~~~~l----~~aD~~IlVvda~~g~~~~~~~i~~~~~~~---~--~P~iivvNK~D~~~a  138 (267)
T cd04169          81 HEDF-------SEDTYRTL----TAVDSAVMVIDAAKGVEPQTRKLFEVCRLR---G--IPIITFINKLDREGR  138 (267)
T ss_pred             chHH-------HHHHHHHH----HHCCEEEEEEECCCCccHHHHHHHHHHHhc---C--CCEEEEEECCccCCC
Confidence            5432       12222222    456999999999877666555555444321   2  379999999997654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.46  E-value=7.3e-13  Score=98.42  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=88.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      .++..++|+|+||+|||||++.|+|...+..|    .+.........  .........+.+.|.+.......    +.+.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~----~~~~   95 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR----ENLK   95 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEEcccchHhhhccEEEEecCCccccCCcHH----HHhh
Confidence            45679999999999999999999998764333    22221111100  00112233455555544322111    1110


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------  165 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------  165 (228)
                                            +|.++++++.+++++..+|   ++++   |++.+|....  ..+.+.+++..      
T Consensus        96 ----------------------LS~G~~qrv~laral~~~p---~illlDEPt~~LD~~~~--~~l~~~l~~~~~~g~ti  148 (173)
T cd03230          96 ----------------------LSGGMKQRLALAQALLHDP---ELLILDEPTSGLDPESR--REFWELLRELKKEGKTI  148 (173)
T ss_pred             ----------------------cCHHHHHHHHHHHHHHcCC---CEEEEeCCccCCCHHHH--HHHHHHHHHHHHCCCEE
Confidence                                  8999999999999999888   4666   9999998877  77777766542      


Q ss_pred             ---CchHHHHHHhcCCeEEEeeCC
Q 027090          166 ---PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       166 ---~~~~~~~~~~~~~~~~~~~~~  186 (228)
                         +|+...+...|+..+++.++.
T Consensus       149 ii~th~~~~~~~~~d~i~~l~~g~  172 (173)
T cd03230         149 LLSSHILEEAERLCDRVAILNNGR  172 (173)
T ss_pred             EEECCCHHHHHHhCCEEEEEeCCC
Confidence               677777777777777776553

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04167 Snu114p Snu114p subfamily

Probab=99.46  E-value=3.1e-13  Score=103.81  Aligned_cols=115  Identities=18%  Similarity=0.254  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------CCCCCcceeeEeEeeee----eCCcEEEEEeCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPG   78 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~-----------------~~~~~~t~~~~~~~~~~----~~~~~~~~iDtpG   78 (228)
                      ++|+|+|+.|+|||||+++|+........                 ......+..........    .....+.++||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            47999999999999999999865321110                 00011222111111111    1235689999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (228)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~  150 (228)
                      ..+..       ......    ...+|++++++|+....+....++++.+...   .  .|+++++||+|..
T Consensus        81 ~~~f~-------~~~~~~----~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNFM-------DEVAAA----LRLSDGVVLVVDVVEGVTSNTERLIRHAILE---G--LPIVLVINKIDRL  136 (213)
T ss_pred             CcchH-------HHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccC
Confidence            65421       222222    3366999999999877777665555544321   2  3799999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.45  E-value=3.1e-13  Score=110.85  Aligned_cols=165  Identities=16%  Similarity=0.111  Sum_probs=104.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHH--
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKE--   92 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~--   92 (228)
                      -.++..++|+|+||||||||+++|.|...+.+|    .+......... .........+.+.+.++...+..+++.-.  
T Consensus        29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G----~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~  104 (351)
T PRK11432         29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG----QIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLK  104 (351)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce----EEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHh
Confidence            346679999999999999999999999875555    22222211110 01112234566777766554433332110  


Q ss_pred             --------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090           93 --------IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        93 --------~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~  161 (228)
                              .........+....--+.-.....+|+|+++++.++++++.+|.   +++   |++.+|....  .++...+
T Consensus       105 ~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~---lLLLDEP~s~LD~~~r--~~l~~~l  179 (351)
T PRK11432        105 MLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK---VLLFDEPLSNLDANLR--RSMREKI  179 (351)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCCcccCCHHHH--HHHHHHH
Confidence                    00000000011111111122225799999999999999998884   666   9999998877  7777666


Q ss_pred             hccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          162 GHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       162 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +...          +|+..++...|++++++.+|.+..
T Consensus       180 ~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~  217 (351)
T PRK11432        180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ  217 (351)
T ss_pred             HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            5432          799999999999999999887654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.45  E-value=2.8e-14  Score=109.44  Aligned_cols=169  Identities=15%  Similarity=0.120  Sum_probs=106.8

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---CcceeeEeEe--e-eeeCCcEEEEEeCCCCCCCCCC
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTKTCEMKT--T-VLKDGQVVNVIDTPGLFDLSAG   85 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~---~~t~~~~~~~--~-~~~~~~~~~~iDtpG~~~~~~~   85 (228)
                      .+..-+++.+++++|+||+||||+++.|+|...+.+|....   .+......+.  . ....+..-..||.|-..+. ..
T Consensus        43 isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~-~v  121 (325)
T COG4586          43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSL-EV  121 (325)
T ss_pred             eeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhH-HH
Confidence            34455778899999999999999999999999877662211   1111000000  0 0011223456788832211 10


Q ss_pred             cHHHHHHHHHHHh-hccCCccEEEEEEeCC-------CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           86 SEFVGKEIVKCLG-MAKDGIHAFLVVFSVT-------NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        86 ~~~~~~~~~~~~~-~~~~~~~~il~v~~~~-------~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                      .    +.+...-. ...++.+-+..+++..       ..+|.|++.+.+++.+++++|.   +++   |.-.+|....  
T Consensus       122 ~----~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~---VLfLDEpTvgLDV~aq--  192 (325)
T COG4586         122 L----KLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPK---VLFLDEPTVGLDVNAQ--  192 (325)
T ss_pred             H----HHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCc---EEEecCCccCcchhHH--
Confidence            0    00000000 0001112122222222       4799999999999999999884   655   8888998877  


Q ss_pred             hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ..+.++++++.          +|++.++.+.|++++++..|....+
T Consensus       193 ~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d  238 (325)
T COG4586         193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD  238 (325)
T ss_pred             HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence            88999888765          8999999999999999999987654

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.45  E-value=6.6e-14  Score=106.89  Aligned_cols=158  Identities=11%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCC-CCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL-FDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~-~~~~~~~~~~~----   90 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .++.................+.+.|.+ ....+..++..    
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~   98 (205)
T cd03226          23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK   98 (205)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhh
Confidence            356779999999999999999999998765444    222211110000011112234444321 11111111110    


Q ss_pred             ------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090           91 ------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        91 ------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~  161 (228)
                            ..+...+...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+.+.+
T Consensus        99 ~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPt~~LD~~~~--~~l~~~l  169 (205)
T cd03226          99 ELDAGNEQAETVLKDL--DLYA--LKERHPLSLSGGQKQRLAIAAALLSGKD---LLIFDEPTSGLDYKNM--ERVGELI  169 (205)
T ss_pred             hcCccHHHHHHHHHHc--CCch--hcCCCchhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCccCCHHHH--HHHHHHH
Confidence                  0111111111  1111  1111224799999999999999988883   555   9999998877  7777777


Q ss_pred             hccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090          162 GHEC---------PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       162 ~~~~---------~~~~~~~~~~~~~~~~~~~~~  186 (228)
                      .+..         +|+..++...|+..+++.++.
T Consensus       170 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~  203 (205)
T cd03226         170 RELAAQGKAVIVITHDYEFLAKVCDRVLLLANGA  203 (205)
T ss_pred             HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence            6541         688888888888877776654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.45  E-value=3e-13  Score=103.91  Aligned_cols=160  Identities=16%  Similarity=0.163  Sum_probs=95.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH---
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG---   90 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~---   90 (228)
                      .-.++.+++|+|+||+|||||+++|+|...+.+|    .++........ .........+.+.|.+....+..+...   
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~   97 (213)
T cd03259          22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG----EILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGL   97 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHH
Confidence            3456789999999999999999999998765444    22222111000 001112234445554443222211110   


Q ss_pred             -----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        91 -----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                                 +.+...+...  +...  +.-.....+|+|+++++.++++++.+|   ++++   |++.+|....  ..
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrl~la~al~~~p---~~lllDEPt~~LD~~~~--~~  168 (213)
T cd03259          98 KLRGVPKAEIRARVRELLELV--GLEG--LLNRYPHELSGGQQQRVALARALAREP---SLLLLDEPLSALDAKLR--EE  168 (213)
T ss_pred             HHcCCCHHHHHHHHHHHHHHc--CChh--hhhcChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH--HH
Confidence                       0011111111  1110  111111479999999999999999888   4666   9999998877  77


Q ss_pred             HHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCC
Q 027090          157 LEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       157 ~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      +.+.+.+.    .      +|+...+...|+..+++.++.+
T Consensus       169 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i  209 (213)
T cd03259         169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRI  209 (213)
T ss_pred             HHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence            77776653    1      6888888888888888877654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.45  E-value=8.4e-12  Score=96.11  Aligned_cols=116  Identities=22%  Similarity=0.217  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-C--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+++|+.|||||||++.+.+.....    ....|........... .  ...+.++||+|           +.++...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g-----------q~~~~~~   70 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPE----GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG-----------QEEYRSL   70 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcc----cCCCceeeeeEEEEEEeCCCEEEEEeecCCC-----------HHHHHHH
Confidence            799999999999999999999887622    2233322222221111 1  34588999999           2344455


Q ss_pred             HhhccCCccEEEEEEeCCCCCC-HH-HHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFS-QE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s-~~-~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      +.....++++++++++....-+ .. ...+.+.+........  |++++.||+|+...
T Consensus        71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~--~iilv~nK~Dl~~~  126 (219)
T COG1100          71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDV--PILLVGNKIDLFDE  126 (219)
T ss_pred             HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCc--eEEEEecccccccc
Confidence            5566678899999999874222 22 2345556655543222  79999999999865

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.45  E-value=1.6e-12  Score=109.69  Aligned_cols=172  Identities=11%  Similarity=0.112  Sum_probs=105.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe-----------------ee------------
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT-----------------TV------------   64 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~-----------------~~------------   64 (228)
                      ...+..+|+++|+-..|||||+.+|+|.....- .......|.+.....                 ..            
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            345568999999999999999999998653111 011112222111100                 00            


Q ss_pred             ---eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCccccccE
Q 027090           65 ---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYM  140 (228)
Q Consensus        65 ---~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~s~~~~~~l~~~~~~~~~~~~~~~  140 (228)
                         ......+.++|+||.           +.+.+.+......+|.+++|+++.++ .....++.+.++. .++-+   ++
T Consensus       110 ~~~~~~~~~i~~IDtPGH-----------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi~---~i  174 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGH-----------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKLK---HI  174 (460)
T ss_pred             cccccccceEeeeeCCCH-----------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCCC---cE
Confidence               000235899999992           23344443444577999999999854 3444555554443 33433   78


Q ss_pred             EEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       141 llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ++++||+|....  .++.+..+.     +.++.....   ......++.||.++.++++|++.|.+.++..
T Consensus       175 IVvlNKiDlv~~--~~~~~~~~e-----i~~~l~~~~---~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        175 IILQNKIDLVKE--AQAQDQYEE-----IRNFVKGTI---ADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             EEEEecccccCH--HHHHHHHHH-----HHHHHHhhc---cCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            999999998765  555554444     444433211   1122345678888899999999999777653

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.45  E-value=4.1e-13  Score=103.18  Aligned_cols=157  Identities=15%  Similarity=0.101  Sum_probs=92.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .+......... .     ........+.+.|.++......+..
T Consensus        25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l  100 (214)
T TIGR02673        25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG----QVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV  100 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHH
Confidence            356789999999999999999999998764443    22222111100 0     0011223445555554332222221


Q ss_pred             H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      .              ..+...+...  +...  +.-.....+|.|+++++.++++++.+|   ++++   |++.+|....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~lllLDEPt~~LD~~~~  173 (214)
T TIGR02673       101 ALPLEVRGKKEREIQRRVGAALRQV--GLEH--KADAFPEQLSGGEQQRVAIARAIVNSP---PLLLADEPTGNLDPDLS  173 (214)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhCCC---CEEEEeCCcccCCHHHH
Confidence            0              0011111111  1110  111111479999999999999999888   3655   9999999877


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeC
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  185 (228)
                        ..+.+.+++..         +|...++...|+..+++.++
T Consensus       174 --~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G  213 (214)
T TIGR02673       174 --ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG  213 (214)
T ss_pred             --HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence              77777776531         67777777777777666544

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=4e-12  Score=92.01  Aligned_cols=155  Identities=15%  Similarity=0.155  Sum_probs=99.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~   96 (228)
                      ..++.++|..|+|||.|+...+....  ......++..+....... ......+++|||.|            ++.+ ..
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF--~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG------------qe~frsv   71 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRF--QPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG------------QESFRSV   71 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCc--cccccceeeeeeceeEEEEcCceEEEEEEecCC------------cHHHHHH
Confidence            36899999999999999999998765  111222233333332222 12344689999999            3433 33


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      ....++.+...|+|.|++.+-|+... +||+-++......+  -++|+.||+|+...  +.+.+          .+-..+
T Consensus        72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~Vs~----------EEGeaF  137 (216)
T KOG0098|consen   72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REVSK----------EEGEAF  137 (216)
T ss_pred             HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccccH----------HHHHHH
Confidence            44567888999999999977777654 57777777643332  35567799999876  55432          122233


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLV  204 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i  204 (228)
                      |...-+++-   ..||.+..+++|.+.-+
T Consensus       138 A~ehgLifm---ETSakt~~~VEEaF~nt  163 (216)
T KOG0098|consen  138 AREHGLIFM---ETSAKTAENVEEAFINT  163 (216)
T ss_pred             HHHcCceee---hhhhhhhhhHHHHHHHH
Confidence            333333333   45788889999887544

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.45  E-value=2.1e-13  Score=103.64  Aligned_cols=170  Identities=16%  Similarity=0.065  Sum_probs=102.8

Q ss_pred             CCCCccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCC
Q 027090            7 DGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGL   79 (228)
Q Consensus         7 ~~~~~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~   79 (228)
                      ....+....-+++..++|+||+|||||||+|.|.+...+.+|.    +........       ........-.+++...+
T Consensus        19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~----v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL   94 (226)
T COG1136          19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE----VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL   94 (226)
T ss_pred             EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce----EEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence            3344455566778899999999999999999999998765542    222111100       00011223466777777


Q ss_pred             CCCCCCcHHHHH----------HHHHHHhhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090           80 FDLSAGSEFVGK----------EIVKCLGMAKDGIHAFLVVF-SVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT  145 (228)
Q Consensus        80 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~il~v~-~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~  145 (228)
                      ....+..+++.-          +...........+..-=... .....+|+|++|++.++++++.+|   .+++   |..
T Consensus        95 l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P---~iilADEPTg  171 (226)
T COG1136          95 LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP---KIILADEPTG  171 (226)
T ss_pred             CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC---CeEEeeCccc
Confidence            666655554320          00000000000101110111 112479999999999999999888   4777   888


Q ss_pred             CCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCC
Q 027090          146 GGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       146 ~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  186 (228)
                      .+|..+.  ..+.+.+.+..          +|+. ++...|++++.+.++.
T Consensus       172 nLD~~t~--~~V~~ll~~~~~~~g~tii~VTHd~-~lA~~~dr~i~l~dG~  219 (226)
T COG1136         172 NLDSKTA--KEVLELLRELNKERGKTIIMVTHDP-ELAKYADRVIELKDGK  219 (226)
T ss_pred             cCChHHH--HHHHHHHHHHHHhcCCEEEEEcCCH-HHHHhCCEEEEEeCCe
Confidence            8898777  77777776642          4555 3456888888888776

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.45  E-value=3.6e-13  Score=103.42  Aligned_cols=158  Identities=15%  Similarity=0.062  Sum_probs=94.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+..|    .+.........     .........+.+.|.+.......++..
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~   98 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG----TIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENIT   98 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHH
Confidence            356789999999999999999999998764444    22222111100     001112234555555443222211110


Q ss_pred             ---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           91 ---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        91 ---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                                     +.....+...  +.+.  +.-.....+|.++++++.++++++.+|.   +++   |++.+|....
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEP~~~LD~~~~  171 (213)
T cd03262          99 LAPIKVKGMSKAEAEERALELLEKV--GLAD--KADAYPAQLSGGQQQRVAIARALAMNPK---VMLFDEPTSALDPELV  171 (213)
T ss_pred             hHHHHhcCCCHHHHHHHHHHHHHHc--CCHh--HhhhCccccCHHHHHHHHHHHHHhcCCC---EEEEeCCccCCCHHHH
Confidence                           0111111110  1111  1111124799999999999999998884   555   9999998776


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  186 (228)
                        +.+.+.+.+..         +|...++.+.|+..+++.++.
T Consensus       172 --~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~  212 (213)
T cd03262         172 --GEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR  212 (213)
T ss_pred             --HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence              77777666532         678888878888877776654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.45  E-value=1.9e-12  Score=108.45  Aligned_cols=117  Identities=14%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccc--------------cc-----------------CCCCCcceeeEeEeeeeeCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFK--------------AS-----------------AGSSGVTKTCEMKTTVLKDG   68 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~-----------------~~~~~~t~~~~~~~~~~~~~   68 (228)
                      .+|+++|+.++|||||+++|+...-..              .+                 ......|.+....... .++
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCC
Confidence            379999999999999999986332100              01                 0112344444333332 456


Q ss_pred             cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCC
Q 027090           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (228)
Q Consensus        69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D  148 (228)
                      ..+.++||||..           ++...+......+|++++|+++..+....+.+.+.++..+ +.+   ++++++||+|
T Consensus        80 ~~~~liDtPGh~-----------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~---~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHE-----------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIR---HVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCC---cEEEEEEecc
Confidence            678999999932           2333333344578999999999877777666655555443 322   6888999999


Q ss_pred             CCcc
Q 027090          149 DLED  152 (228)
Q Consensus       149 ~~~~  152 (228)
                      ....
T Consensus       145 ~~~~  148 (406)
T TIGR02034       145 LVDY  148 (406)
T ss_pred             cccc
Confidence            8753

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.45  E-value=1.2e-14  Score=106.75  Aligned_cols=169  Identities=18%  Similarity=0.199  Sum_probs=107.0

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC---CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      ..-.++..|+++||||+||||.+.+++|...+.+|.   ...++|...-+   ....-..-++-+.|.++...+..+++.
T Consensus        25 l~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~---~RArlGigYLpQE~SIFr~LtV~dNi~  101 (243)
T COG1137          25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH---KRARLGIGYLPQEASIFRKLTVEDNIM  101 (243)
T ss_pred             EEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChH---HHhhcCcccccccchHhhcCcHHHHHH
Confidence            345667899999999999999999999988765552   11122211100   001111234555565554443333211


Q ss_pred             HHHHHHHh-------------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCccchh
Q 027090           91 KEIVKCLG-------------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLEDHEK  155 (228)
Q Consensus        91 ~~~~~~~~-------------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~~~~~  155 (228)
                       -+.....             ...+.++.--+.-+....+|+++++++++++++..+|.  ++++  ||+.+|+..-  .
T Consensus       102 -~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~--fiLLDEPFAGVDPiaV--~  176 (243)
T COG1137         102 -AVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK--FILLDEPFAGVDPIAV--I  176 (243)
T ss_pred             -HHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC--EEEecCCccCCCchhH--H
Confidence             0111100             00111222222233335799999999999999998885  5666  9999999866  6


Q ss_pred             hHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          156 TLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       156 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      .+..++..++         .|..++.+..|++.+++..|.+...
T Consensus       177 dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~  220 (243)
T COG1137         177 DIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE  220 (243)
T ss_pred             HHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence            7776666554         8999999999999999999987654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.44  E-value=2.4e-13  Score=106.04  Aligned_cols=160  Identities=17%  Similarity=0.112  Sum_probs=97.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEFVG-   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~~~-   90 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+......... .  . .......+.+.|.++...+..+.+. 
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~   98 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG----SVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMV   98 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc----eEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHH
Confidence            356789999999999999999999998764444    22221111000 0  0 0111234455555544322222110 


Q ss_pred             -----------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EE
Q 027090           91 -----------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VF  144 (228)
Q Consensus        91 -----------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~  144 (228)
                                             ......+...  +...  +.-.....+|+|+++++.++++++.+|   ++++   |+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p---~llllDEPt  171 (236)
T cd03219          99 AAQARTGSGLLLARARREEREARERAEELLERV--GLAD--LADRPAGELSYGQQRRLEIARALATDP---KLLLLDEPA  171 (236)
T ss_pred             HHhhccccccccccccccHHHHHHHHHHHHHHc--Cccc--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCc
Confidence                                   0011111110  1111  111112479999999999999999888   3666   99


Q ss_pred             eCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          145 TGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       145 ~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+|....  ..+.+++++..         +|+...+...|+..+++.++.+.
T Consensus       172 ~~LD~~~~--~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~  222 (236)
T cd03219         172 AGLNPEET--EELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI  222 (236)
T ss_pred             ccCCHHHH--HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence            99998877  77777776532         79999998999999998888754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PLN00023 GTP-binding protein; Provisional

Probab=99.44  E-value=2.9e-12  Score=102.39  Aligned_cols=122  Identities=17%  Similarity=0.181  Sum_probs=77.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEe--Eeeeee--------------CCcEEEEEeCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLK--------------DGQVVNVIDTPGL   79 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~--------------~~~~~~~iDtpG~   79 (228)
                      .....+|+|+|..|||||||++.+.+....    .....|+....  ......              ....+.++||+|-
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~----~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq   93 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSI----ARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH   93 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcc----cccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence            334479999999999999999999987541    11222322211  111110              1245899999992


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--------c--ccccEEEEEeCCC
Q 027090           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--------N--VFDYMIVVFTGGD  148 (228)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~--------~--~~~~~llv~~~~D  148 (228)
                      .           .+.......+..++++|+|+|++++-|.... .|++.+......        +  ...|++||.||+|
T Consensus        94 E-----------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D  162 (334)
T PLN00023         94 E-----------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD  162 (334)
T ss_pred             h-----------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence            2           2233334456789999999999976666554 466666654210        0  1137899999999


Q ss_pred             CCcc
Q 027090          149 DLED  152 (228)
Q Consensus       149 ~~~~  152 (228)
                      +...
T Consensus       163 L~~~  166 (334)
T PLN00023        163 IAPK  166 (334)
T ss_pred             cccc
Confidence            8643

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.44  E-value=3.6e-13  Score=111.96  Aligned_cols=160  Identities=14%  Similarity=0.063  Sum_probs=97.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcH------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSE------   87 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~------   87 (228)
                      .++.+++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.+.+.......+      
T Consensus        27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG----~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~  102 (402)
T PRK09536         27 REGSLVGLVGPNGAGKTTLLRAINGTLTPTAG----TVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGR  102 (402)
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCCCCCCc----EEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhcc
Confidence            56789999999999999999999998765444    22222111100   000111223344444321111111      


Q ss_pred             ------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           88 ------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        88 ------------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                                  ...+.....+...    +.--+.-.....+|.|+++++.++++++.+|.   +++   |++.+|....
T Consensus       103 ~~~~~~~~~~~~~~~~~v~~~le~v----gl~~~~~~~~~~LSgGerQRv~IArAL~~~P~---iLLLDEPtsgLD~~~~  175 (402)
T PRK09536        103 TPHRSRFDTWTETDRAAVERAMERT----GVAQFADRPVTSLSGGERQRVLLARALAQATP---VLLLDEPTASLDINHQ  175 (402)
T ss_pred             chhcccccCCCHHHHHHHHHHHHHc----CCchhhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH
Confidence                        0001111122111    11101111125799999999999999999884   555   9999999876


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                        .++.++++++.         +|++..+.+.|++.+++.++.+..
T Consensus       176 --~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~  219 (402)
T PRK09536        176 --VRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA  219 (402)
T ss_pred             --HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence              77777666543         799999999999999999887653

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.44  E-value=1.6e-11  Score=86.97  Aligned_cols=164  Identities=17%  Similarity=0.170  Sum_probs=100.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+.+|+++|..||||||+++.+.|...     ....+|.-.+..... .+...+.++|.-|       +    +.+..+.
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~-~~~~~L~iwDvGG-------q----~~lr~~W   77 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLE-YKGYTLNIWDVGG-------Q----KTLRSYW   77 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEE-ecceEEEEEEcCC-------c----chhHHHH
Confidence            367999999999999999999998863     223455555555444 6778899999988       2    3344444


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ...++..|+++||+|.+.+....+- +.+..+..--+- .-.|++++.||.|....  -..+.+..   .-.+.++.+.+
T Consensus        78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerl-aG~~~Lvlank~dl~~~--l~~~~i~~---~~~L~~l~ks~  151 (185)
T KOG0073|consen   78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERL-AGAPLLVLANKQDLPGA--LSLEEISK---ALDLEELAKSH  151 (185)
T ss_pred             HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhh-cCCceEEEEecCcCccc--cCHHHHHH---hhCHHHhcccc
Confidence            4555566999999998755555442 222222211000 11269999999998743  22222111   11256666666


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.+++...+.      +++++.+-++++..-+.+
T Consensus       152 ~~~l~~cs~~------tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  152 HWRLVKCSAV------TGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             CceEEEEecc------ccccHHHHHHHHHHHHHH
Confidence            6666655554      445566666666554443

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.44  E-value=2.3e-12  Score=90.98  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH-HH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-CL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~-~~   97 (228)
                      .+|+|+|.+|+|||||+-.++...+-  ......+..++...... ..+...+.+|||+|            +|.++ ..
T Consensus        12 ~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG------------qErFRtLT   77 (209)
T KOG0080|consen   12 FKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG------------QERFRTLT   77 (209)
T ss_pred             EEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcCceEEEEEEeccc------------hHhhhccC
Confidence            79999999999999999998866541  11122233344333322 12344689999999            44444 44


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ...++++..+|+|.|++.+-+..... |++.+-....++. --.++|.||+|....  +.+.          .++=++++
T Consensus        78 pSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~d-iikmlVgNKiDkes~--R~V~----------reEG~kfA  144 (209)
T KOG0080|consen   78 PSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPD-IIKMLVGNKIDKESE--RVVD----------REEGLKFA  144 (209)
T ss_pred             HhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCcc-HhHhhhcccccchhc--cccc----------HHHHHHHH
Confidence            46678999999999999666665443 5565655544442 123458899997643  3332          12222333


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ...-++|...   +|++..+++..++.+...+
T Consensus       145 r~h~~LFiE~---SAkt~~~V~~~FeelveKI  173 (209)
T KOG0080|consen  145 RKHRCLFIEC---SAKTRENVQCCFEELVEKI  173 (209)
T ss_pred             HhhCcEEEEc---chhhhccHHHHHHHHHHHH
Confidence            3333344333   6777888888776554433

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.44  E-value=2.6e-13  Score=104.04  Aligned_cols=157  Identities=17%  Similarity=0.212  Sum_probs=94.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG------   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~------   90 (228)
                      .++.+++|+|+||||||||+++|+|...+.+|    .+......... ........+.+.|.+....+..+...      
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~   98 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSG----EVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK   98 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc
Confidence            46679999999999999999999998764444    22211110000 01112234455555544322222210      


Q ss_pred             --------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           91 --------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        91 --------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                              +.+...+...  +...  ..-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+.+
T Consensus        99 ~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p~---~lllDEP~~~LD~~~~--~~~~~  169 (210)
T cd03269          99 GLKKEEARRRIDEWLERL--ELSE--YANKRVEELSKGNQQKVQFIAAVIHDPE---LLILDEPFSGLDPVNV--ELLKD  169 (210)
T ss_pred             CCChHHHHHHHHHHHHHc--CChH--HHhCcHhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH--HHHHH
Confidence                    0011111110  1110  0111124799999999999999998883   555   9999998877  77777


Q ss_pred             HhhccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090          160 FLGHEC---------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       160 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      .++...         +|....+.+.|+..+++.++.+
T Consensus       170 ~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i  206 (210)
T cd03269         170 VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA  206 (210)
T ss_pred             HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEE
Confidence            776532         6888888888888888777654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.44  E-value=2.6e-12  Score=111.94  Aligned_cols=163  Identities=17%  Similarity=0.201  Sum_probs=97.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcc-cc-----cC-------CCCCcceeeEeEeeee----eCCcEEEEEeCCCCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAF-KA-----SA-------GSSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFD   81 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~-~~-----~~-------~~~~~t~~~~~~~~~~----~~~~~~~~iDtpG~~~   81 (228)
                      -++++|+|+.++|||||++.|+...-. ..     ..       .....|..........    .....+.++||||..+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            478999999999999999999754210 00     00       0113343332222211    1124689999999654


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~  161 (228)
                      .       ..++..+    ...+|++++|+|++.+.+..+...+..+..   ..  .|+++++||+|....  . .....
T Consensus        83 F-------~~~v~~~----l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~--~-~~~~~  143 (595)
T TIGR01393        83 F-------SYEVSRS----LAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSA--D-PERVK  143 (595)
T ss_pred             H-------HHHHHHH----HHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCcc--C-HHHHH
Confidence            2       1233333    346699999999987777766654443332   12  278999999998643  1 11111


Q ss_pred             hccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ++     +.+... +.     ....+..||.++.++++|++.|.+.++..
T Consensus       144 ~e-----l~~~lg-~~-----~~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       144 KE-----IEEVIG-LD-----ASEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             HH-----HHHHhC-CC-----cceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            22     222211 10     01134568888999999999998887754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.44  E-value=3.7e-13  Score=114.98  Aligned_cols=69  Identities=14%  Similarity=-0.021  Sum_probs=60.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      ..+|+|++.++.++++++.+|.   ++|   |.||+|....  .|+++++..+.      +|+..-+...|..++.+..+
T Consensus       152 ~~LSGG~r~Rv~LA~aL~~~pD---lLLLDEPTNHLD~~~i--~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g  226 (530)
T COG0488         152 SSLSGGWRRRVALARALLEEPD---LLLLDEPTNHLDLESI--EWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRG  226 (530)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCC---EEEEcCCCcccCHHHH--HHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCC
Confidence            5899999999999999999986   555   9999999988  99999998877      89999999999999888777


Q ss_pred             CCc
Q 027090          186 KTK  188 (228)
Q Consensus       186 ~~~  188 (228)
                      ...
T Consensus       227 ~l~  229 (530)
T COG0488         227 KLT  229 (530)
T ss_pred             cee
Confidence            543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.44  E-value=2.5e-12  Score=108.65  Aligned_cols=120  Identities=19%  Similarity=0.223  Sum_probs=73.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC---Ccc-----------ccc---------------CCCCCcceeeEeEeeeee
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR---KAF-----------KAS---------------AGSSGVTKTCEMKTTVLK   66 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~---~~~-----------~~~---------------~~~~~~t~~~~~~~~~~~   66 (228)
                      .++..+|+++|+.++|||||+++|+..   ...           ..+               ......|.+....... .
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-T   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-c
Confidence            345588999999999999999999742   110           000               0122445444443332 4


Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhCccccccEEEE
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVV  143 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s---~~~~~~l~~~~~~~~~~~~~~~llv  143 (228)
                      +...+.++||||..           ++...+......+|++++|+|++.+.+   ......+.++. .++.   ++++++
T Consensus        83 ~~~~i~iiDtpGh~-----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~-~~~~---~~iIVv  147 (426)
T TIGR00483        83 DKYEVTIVDCPGHR-----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR-TLGI---NQLIVA  147 (426)
T ss_pred             CCeEEEEEECCCHH-----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH-HcCC---CeEEEE
Confidence            56679999999932           233333334457899999999986522   22223233332 2332   268899


Q ss_pred             EeCCCCCc
Q 027090          144 FTGGDDLE  151 (228)
Q Consensus       144 ~~~~D~~~  151 (228)
                      +||+|...
T Consensus       148 iNK~Dl~~  155 (426)
T TIGR00483       148 INKMDSVN  155 (426)
T ss_pred             EEChhccC
Confidence            99999864

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.44  E-value=1.5e-13  Score=103.99  Aligned_cols=169  Identities=17%  Similarity=0.169  Sum_probs=112.4

Q ss_pred             ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHH-
Q 027090           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV-   89 (228)
Q Consensus        11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~-   89 (228)
                      ..+..-+++...+++|+||+||||++++|+|...+.+|    .++......... ..++.-++-.-.|++...+..+++ 
T Consensus        20 ~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G----~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv~dql~   94 (300)
T COG4152          20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG----EITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLK   94 (300)
T ss_pred             ceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCc----eEEEcCcchhhh-hhhhcccChhhhccCccCcHHHHHH
Confidence            35566678899999999999999999999998775444    333332222111 122223444455555544433322 


Q ss_pred             ---------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCccchhhHH
Q 027090           90 ---------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        90 ---------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~~~~~~~~  158 (228)
                               .+++...+..+.++.++.-...+.-..+|.+.+|.+.++.+.++.|.  -+|+  ||+.+|+.+.  +-+.
T Consensus        95 yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePe--LlILDEPFSGLDPVN~--elLk  170 (300)
T COG4152          95 YLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPE--LLILDEPFSGLDPVNV--ELLK  170 (300)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCC--EEEecCCccCCChhhH--HHHH
Confidence                     01122222222234444444444446899999999999999999985  3444  9999999988  8888


Q ss_pred             HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+++         +|.+..+.+.|++.+.+..|...
T Consensus       171 ~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V  209 (300)
T COG4152         171 DAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV  209 (300)
T ss_pred             HHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence            8777665         89999999999999888777644

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.3e-13  Score=104.40  Aligned_cols=165  Identities=12%  Similarity=0.087  Sum_probs=101.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      .-.++..++|+|++|||||||.++|.|...+.+|    .++........     .........+-|-.+-..........
T Consensus        29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G----~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~  104 (252)
T COG1124          29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSG----SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRI  104 (252)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc----eEEECCcccCccccchhhccceeEEecCCccccCcchhHHHH
Confidence            3456789999999999999999999999875554    44433322111     01111122233322222211111111


Q ss_pred             HHH-------------HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCccch
Q 027090           90 GKE-------------IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLEDHE  154 (228)
Q Consensus        90 ~~~-------------~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~~~~  154 (228)
                      ..|             +...+... .-...  +..+....+|+|+++++.+++++..+|+  .+++  +++.+|....  
T Consensus       105 l~Epl~~~~~~~~~~~i~~~L~~V-gL~~~--~l~R~P~eLSGGQ~QRiaIARAL~~~Pk--lLIlDEptSaLD~siQ--  177 (252)
T COG1124         105 LSEPLRPHGLSKSQQRIAELLDQV-GLPPS--FLDRRPHELSGGQRQRIAIARALIPEPK--LLILDEPTSALDVSVQ--  177 (252)
T ss_pred             HhhhhccCCccHHHHHHHHHHHHc-CCCHH--HHhcCchhcChhHHHHHHHHHHhccCCC--EEEecCchhhhcHHHH--
Confidence            111             11111111 00011  1112224699999999999999988885  3343  8899998877  


Q ss_pred             hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      .++.+++...+          +|++.-+...|++++++.+|.+...
T Consensus       178 a~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~  223 (252)
T COG1124         178 AQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI  223 (252)
T ss_pred             HHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence            88888777665          8999999999999999999986543

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.43  E-value=6.5e-13  Score=103.40  Aligned_cols=164  Identities=13%  Similarity=0.079  Sum_probs=99.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++..++|+|+||+|||||+++|+|...+..|    .+..........      ........+.+.|.++...+..+++.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~  104 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSG----SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVA  104 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHH
Confidence            56789999999999999999999998764444    232222111000      00122345566666654333222221


Q ss_pred             HHH----------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 KEI----------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ~~~----------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                      ...          ...........+.--+.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~---lllLDEP~~~LD~~~~--~~l  179 (233)
T cd03258         105 LPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK---VLLCDEATSALDPETT--QSI  179 (233)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC---EEEecCCCCcCCHHHH--HHH
Confidence            000          0000000011111001111124799999999999999998883   555   9999998877  777


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.+.+..          +|....+.+.|+..+++.++.+..
T Consensus       180 ~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  221 (233)
T cd03258         180 LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE  221 (233)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            76665431          789998888999998888887643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10218 GTP-binding protein; Provisional

Probab=99.43  E-value=4.2e-12  Score=110.42  Aligned_cols=118  Identities=18%  Similarity=0.260  Sum_probs=76.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc-cccc-------------CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   83 (228)
                      .-++|+|+|+.++|||||+++|+...- +...             ......|........ .+++..+.++||||..+..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-~~~~~~inliDTPG~~df~   82 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-KWNDYRINIVDTPGHADFG   82 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE-ecCCEEEEEEECCCcchhH
Confidence            347899999999999999999986311 1110             011223333332222 2567789999999965431


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                             .++..    ....+|++++|+|+..+....++..+..+... +    .|.++++||+|....
T Consensus        83 -------~~v~~----~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~a  135 (607)
T PRK10218         83 -------GEVER----VMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPGA  135 (607)
T ss_pred             -------HHHHH----HHHhCCEEEEEEecccCccHHHHHHHHHHHHc-C----CCEEEEEECcCCCCC
Confidence                   22223    33567999999999876666666666655442 2    267889999998643

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.43  E-value=5.8e-13  Score=104.95  Aligned_cols=157  Identities=15%  Similarity=0.163  Sum_probs=96.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG-----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~-----   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.......  ........++.+.|.+.......+.+.     
T Consensus        35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G----~i~~~g~~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~  108 (257)
T PRK11247         35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG----ELLAGTAPL--AEAREDTRLMFQDARLLPWKKVIDNVGLGLKG  108 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEH--HHhhCceEEEecCccCCCCCcHHHHHHhcccc
Confidence            356789999999999999999999998764444    222111100  001122234555565544322222211     


Q ss_pred             ---HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc
Q 027090           91 ---KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE  164 (228)
Q Consensus        91 ---~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~  164 (228)
                         ......+...  +...  +.-.....+|+|+++++.++++++.++.   +++   |++.+|....  ..+.+.+.+.
T Consensus       109 ~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGqkqrl~laraL~~~p~---lllLDEPt~~LD~~~~--~~l~~~L~~~  179 (257)
T PRK11247        109 QWRDAALQALAAV--GLAD--RANEWPAALSGGQKQRVALARALIHRPG---LLLLDEPLGALDALTR--IEMQDLIESL  179 (257)
T ss_pred             hHHHHHHHHHHHc--CChh--HhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCCHHHH--HHHHHHHHHH
Confidence               1111111111  1110  1111125799999999999999998884   555   9999998877  7776666542


Q ss_pred             ----C------CchHHHHHHhcCCeEEEeeCCC
Q 027090          165 ----C------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       165 ----~------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                          .      +|+...+...|+..+++.++.+
T Consensus       180 ~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i  212 (257)
T PRK11247        180 WQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI  212 (257)
T ss_pred             HHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence                1      7999998899998888877654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.43  E-value=2.4e-12  Score=113.59  Aligned_cols=121  Identities=12%  Similarity=0.130  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccC-----------------CCCCcceeeEeEee
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA-----------------GSSGVTKTCEMKTT   63 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~-----------------~~~~~t~~~~~~~~   63 (228)
                      +.++..+|+++|+.++|||||+++|+...-..              .+.                 .....|.+......
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            44556789999999999999999998643210              000                 01223333332222


Q ss_pred             eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEE
Q 027090           64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (228)
Q Consensus        64 ~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv  143 (228)
                      . .++..+.++||||..           ++...+......+|++++|+++..+....++..+.++... +.+   +++++
T Consensus       100 ~-~~~~~~~liDtPG~~-----------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~---~iivv  163 (632)
T PRK05506        100 A-TPKRKFIVADTPGHE-----------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIR---HVVLA  163 (632)
T ss_pred             c-cCCceEEEEECCChH-----------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCC---eEEEE
Confidence            2 456678999999932           2222233334578999999999877666555555555433 323   68899


Q ss_pred             EeCCCCCc
Q 027090          144 FTGGDDLE  151 (228)
Q Consensus       144 ~~~~D~~~  151 (228)
                      +||+|...
T Consensus       164 vNK~D~~~  171 (632)
T PRK05506        164 VNKMDLVD  171 (632)
T ss_pred             EEeccccc
Confidence            99999874

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.43  E-value=9.4e-12  Score=89.28  Aligned_cols=112  Identities=22%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee---CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      |+|++|+|||||+|+|++.......   ...|. .........   ....+.++|+||....           .......
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~---~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEE---YETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcc---cccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence            5899999999999999987652111   11221 221111111   2456899999995432           1111334


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHH--HHHHHHhCccccccEEEEEeCCCCCcc
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l--~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .+..|++++++++....+......+  .........  ..|+++++||+|....
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~nk~D~~~~  117 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGE--NIPIILVGNKIDLPEE  117 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccC--CCcEEEEEeccccccc
Confidence            4577999999999854444443322  112111122  2489999999998765

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.43  E-value=6.9e-13  Score=99.00  Aligned_cols=135  Identities=21%  Similarity=0.178  Sum_probs=83.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      +++.+++|+|+||+|||||+++|+|...+.+|    .+.........     .........+.+.|.+......     .
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~-----~   94 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG----SILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTV-----L   94 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCH-----H
Confidence            46679999999999999999999998764433    22221111100     0011122345555554432111     1


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---  165 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---  165 (228)
                      +   .+          .+      .+|.|+++++.++++++.++   ++++   |++.+|....  ..+.+.+++..   
T Consensus        95 ~---~l----------~~------~lS~G~~qr~~la~al~~~p---~llilDEP~~~LD~~~~--~~l~~~l~~~~~~~  150 (178)
T cd03229          95 E---NI----------AL------GLSGGQQQRVALARALAMDP---DVLLLDEPTSALDPITR--REVRALLKSLQAQL  150 (178)
T ss_pred             H---he----------ee------cCCHHHHHHHHHHHHHHCCC---CEEEEeCCcccCCHHHH--HHHHHHHHHHHHhc
Confidence            1   00          00      08999999999999999888   4665   8999998876  77766665421   


Q ss_pred             -------CchHHHHHHhcCCeEEEee
Q 027090          166 -------PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       166 -------~~~~~~~~~~~~~~~~~~~  184 (228)
                             +|+...+...|+..+++.+
T Consensus       151 ~~tiii~sH~~~~~~~~~d~i~~l~~  176 (178)
T cd03229         151 GITVVLVTHDLDEAARLADRVVVLRD  176 (178)
T ss_pred             CCEEEEEeCCHHHHHHhcCEEEEEeC
Confidence                   5666666666666655544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=3.5e-13  Score=110.75  Aligned_cols=161  Identities=12%  Similarity=0.107  Sum_probs=101.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGK---   91 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~---   91 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+........ ..........+.+.+.++...+..+++.-   
T Consensus        27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G----~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~  102 (356)
T PRK11650         27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSG----EIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLK  102 (356)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce----EEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence            345679999999999999999999998775444    2222221110 00011223456666666654333332210   


Q ss_pred             -----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           92 -----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        92 -----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                 .....+...  +++.  +.-.....+|+|+++++.+++++..+|.   +++   |++.+|....  ..+
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGq~QRvalARAL~~~P~---llLLDEP~s~LD~~~r--~~l  173 (356)
T PRK11650        103 IRGMPKAEIEERVAEAARIL--ELEP--LLDRKPRELSGGQRQRVAMGRAIVREPA---VFLFDEPLSNLDAKLR--VQM  173 (356)
T ss_pred             hcCCCHHHHHHHHHHHHHHc--CChh--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHH
Confidence                       011111110  1111  1111225799999999999999998884   555   9999998877  766


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ...+++..          +|+..++...|+..+++.++++..
T Consensus       174 ~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~  215 (356)
T PRK11650        174 RLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ  215 (356)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence            66655432          799999999999999998887643

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.43  E-value=7.5e-13  Score=109.46  Aligned_cols=161  Identities=14%  Similarity=0.099  Sum_probs=99.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+......... .........+.+.+.++...+..+++.    
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G----~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~  101 (369)
T PRK11000         26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG----DLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLK  101 (369)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHh
Confidence            346679999999999999999999998775444    22221111100 001112345556665554333222221    


Q ss_pred             ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                +.+...+...  +...  +.-.....+|+|+++++.++++++.+|.   ++|   |++.+|....  ..+
T Consensus       102 ~~~~~~~~~~~~~~~~l~~l--gL~~--~~~~~~~~LSgGq~QRvaLAraL~~~P~---lLLLDEPts~LD~~~~--~~l  172 (369)
T PRK11000        102 LAGAKKEEINQRVNQVAEVL--QLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPS---VFLLDEPLSNLDAALR--VQM  172 (369)
T ss_pred             hcCCCHHHHHHHHHHHHHHc--CChh--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHH
Confidence                      0011111110  1110  1111124799999999999999998884   555   9999998876  666


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.+++..          +|+..++...|+..+++.++.+..
T Consensus       173 ~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~  214 (369)
T PRK11000        173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ  214 (369)
T ss_pred             HHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            66555431          799999999999999998887653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.43  E-value=8.4e-14  Score=104.84  Aligned_cols=165  Identities=15%  Similarity=0.068  Sum_probs=104.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--------CCcEEEEEeCCCCCCCCCCc
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--------DGQVVNVIDTPGLFDLSAGS   86 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~~~iDtpG~~~~~~~~   86 (228)
                      .-+++..|+|+|++|+|||||+++|.|...+.+|    .+....  ......        ....-.+++-|++......-
T Consensus        26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G----~i~~~g--~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~   99 (258)
T COG3638          26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG----EILFNG--VQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVL   99 (258)
T ss_pred             EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc----eEEecc--cchhccchHHHHHHHHhceeEeccCCcccccHHH
Confidence            3456789999999999999999999996554333    222211  111101        11224566666554332221


Q ss_pred             HHHHHH-------HHHHHhh-----------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090           87 EFVGKE-------IVKCLGM-----------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT  145 (228)
Q Consensus        87 ~~~~~~-------~~~~~~~-----------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~  145 (228)
                      ++...-       +......           +.++++..=..+.-.+.+|+++++++.+++++..++.   ++|   |++
T Consensus       100 ~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pk---iILADEPva  176 (258)
T COG3638         100 ENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK---IILADEPVA  176 (258)
T ss_pred             HHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCC---EEecCCccc
Confidence            111000       0000000           0112222222222236899999999999999998884   788   999


Q ss_pred             CCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          146 GGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       146 ~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      -+|+...  ..+.+++++..          .|.++-..++|++.+-+.++++...
T Consensus       177 sLDp~~a--~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD  229 (258)
T COG3638         177 SLDPESA--KKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD  229 (258)
T ss_pred             ccChhhH--HHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence            9999988  88888887764          6899999999999998888887654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.43  E-value=4.5e-12  Score=100.74  Aligned_cols=115  Identities=20%  Similarity=0.239  Sum_probs=70.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcc--ccc-CCC-------------CCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAF--KAS-AGS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~--~~~-~~~-------------~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   84 (228)
                      +|+|+|++|+|||||+++|++....  ..+ ...             ...+....... ..+++..+.++||||..+.  
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~-~~~~~~~i~liDtPG~~~f--   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAP-LEWKGHKINLIDTPGYADF--   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEE-EEECCEEEEEEECcCHHHH--
Confidence            5899999999999999999753211  001 000             01111111111 2245677899999995421  


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                           ..+...+    ...+|.+++++++..+........++.+...   .  .|.++++||+|....
T Consensus        78 -----~~~~~~~----l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~---~--~p~iivvNK~D~~~~  131 (268)
T cd04170          78 -----VGETRAA----LRAADAALVVVSAQSGVEVGTEKLWEFADEA---G--IPRIIFINKMDRERA  131 (268)
T ss_pred             -----HHHHHHH----HHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCccCCC
Confidence                 1222333    3466999999999876666656555544322   2  278899999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.43  E-value=6.3e-13  Score=99.60  Aligned_cols=140  Identities=17%  Similarity=0.192  Sum_probs=87.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee----eeCCcEEEEEeCC---CCCCCCCCcHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV----LKDGQVVNVIDTP---GLFDLSAGSEF   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~iDtp---G~~~~~~~~~~   88 (228)
                      -+++..++|+|+||+|||||++.|+|...+.+|    .++.........    ........+.+.|   ++....+.   
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~---   95 (182)
T cd03215          23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASG----EITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSV---   95 (182)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcH---
Confidence            346679999999999999999999998764444    333222111000    0011223344443   23322211   


Q ss_pred             HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC
Q 027090           89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC  165 (228)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~  165 (228)
                        .+......                 .+|.++++++.++++++.+|   ++++   |++.+|....  ..+.+.+.+..
T Consensus        96 --~e~l~~~~-----------------~LS~G~~qrl~la~al~~~p---~llllDEP~~~LD~~~~--~~l~~~l~~~~  151 (182)
T cd03215          96 --AENIALSS-----------------LLSGGNQQKVVLARWLARDP---RVLILDEPTRGVDVGAK--AEIYRLIRELA  151 (182)
T ss_pred             --HHHHHHHh-----------------hcCHHHHHHHHHHHHHccCC---CEEEECCCCcCCCHHHH--HHHHHHHHHHH
Confidence              11111100                 08999999999999999888   4666   9999998877  77777666532


Q ss_pred             ---------CchHHHHHHhcCCeEEEeeCC
Q 027090          166 ---------PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       166 ---------~~~~~~~~~~~~~~~~~~~~~  186 (228)
                               +|...++...|+..+++.++.
T Consensus       152 ~~~~tiii~sh~~~~~~~~~d~v~~l~~G~  181 (182)
T cd03215         152 DAGKAVLLISSELDELLGLCDRILVMYEGR  181 (182)
T ss_pred             HCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence                     677777777787777766553

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.43  E-value=5.2e-13  Score=104.47  Aligned_cols=161  Identities=16%  Similarity=0.113  Sum_probs=96.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .-.++.+++|+|+||||||||+++|+|...+.+|    .+..........      ........+.+.+.++...+..+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   98 (241)
T cd03256          23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG----SVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLEN   98 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc----eEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHH
Confidence            3456789999999999999999999998764444    222211111000      001112334444444332221111


Q ss_pred             HH----------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090           89 VG----------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---V  143 (228)
Q Consensus        89 ~~----------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v  143 (228)
                      +.                      +.....+..    .+.--+.-.....+|.|+++++.++++++.+|.   +++   |
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEP  171 (241)
T cd03256          99 VLSGRLGRRSTWRSLFGLFPKEEKQRALAALER----VGLLDKAYQRADQLSGGQQQRVAIARALMQQPK---LILADEP  171 (241)
T ss_pred             HHhhhcccchhhhhhcccCcHHHHHHHHHHHHH----cCChhhhCCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCc
Confidence            10                      011111111    111001111124799999999999999998884   666   9


Q ss_pred             EeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          144 FTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       144 ~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ++.+|....  ..+.+.+.+..          +|++..+...|+..+++.++.+.
T Consensus       172 t~~LD~~~~--~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~  224 (241)
T cd03256         172 VASLDPASS--RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV  224 (241)
T ss_pred             cccCCHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999998877  77777665431          78999998899999999888754

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.43  E-value=2.6e-12  Score=109.35  Aligned_cols=121  Identities=12%  Similarity=0.144  Sum_probs=77.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccC-----------------CCCCcceeeEeEee
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA-----------------GSSGVTKTCEMKTT   63 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~-----------------~~~~~t~~~~~~~~   63 (228)
                      ..++..+|+++|+.++|||||+++|+...-..              .+.                 .....|.+......
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            35666899999999999999999987542100              010                 01234444433332


Q ss_pred             eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEE
Q 027090           64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (228)
Q Consensus        64 ~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv  143 (228)
                      . .+...+.++||||..           .+...+......+|++++|+++..+....+.+.+.++..+ +.   ++++++
T Consensus       103 ~-~~~~~i~~iDTPGh~-----------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~---~~iIvv  166 (474)
T PRK05124        103 S-TEKRKFIIADTPGHE-----------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GI---KHLVVA  166 (474)
T ss_pred             c-cCCcEEEEEECCCcH-----------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CC---CceEEE
Confidence            2 456678999999932           2222222234678999999999877666555554444433 32   368899


Q ss_pred             EeCCCCCc
Q 027090          144 FTGGDDLE  151 (228)
Q Consensus       144 ~~~~D~~~  151 (228)
                      +||+|...
T Consensus       167 vNKiD~~~  174 (474)
T PRK05124        167 VNKMDLVD  174 (474)
T ss_pred             EEeecccc
Confidence            99999874

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.42  E-value=1e-12  Score=104.44  Aligned_cols=161  Identities=17%  Similarity=0.154  Sum_probs=99.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee---e----eCCcEEEEEeCCCCCCCCCCcH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---L----KDGQVVNVIDTPGLFDLSAGSE   87 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---~----~~~~~~~~iDtpG~~~~~~~~~   87 (228)
                      .-+++..++|+|+||||||||+++|+|...+.+|    .+..........   .    .......+.+.|.++...+..+
T Consensus        46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G----~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  121 (269)
T cd03294          46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG----KVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLE  121 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHH
Confidence            3456789999999999999999999998765444    222222111000   0    0112345556666554333222


Q ss_pred             HHHH--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           88 FVGK--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        88 ~~~~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      .+.-              .+...+...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|..
T Consensus       122 ~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Gq~qrv~lAral~~~p~---illLDEPt~~LD~~  194 (269)
T cd03294         122 NVAFGLEVQGVPRAEREERAAEALELV--GLEG--WEHKYPDELSGGMQQRVGLARALAVDPD---ILLMDEAFSALDPL  194 (269)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHc--CCHh--HhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCCccCCHH
Confidence            2110              001111110  1110  1111114799999999999999998884   555   99999988


Q ss_pred             ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..  ..+.+.+.+..          +|.+..+...|+..+++.++.+.
T Consensus       195 ~~--~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~  240 (269)
T cd03294         195 IR--REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV  240 (269)
T ss_pred             HH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence            77  77777665431          68999988999999888887754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.42  E-value=5.7e-12  Score=95.98  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=66.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee---eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +|+|+|++|||||||++.|.+......-    + ++.........   ..+..+.++||||...       ....+..  
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~----~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-------~~~~~~~--   67 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTV----T-SIEPNVATFILNSEGKGKKFRLVDVPGHPK-------LRDKLLE--   67 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc----C-cEeecceEEEeecCCCCceEEEEECCCCHH-------HHHHHHH--
Confidence            6899999999999999999987542211    1 11111111111   1356789999999442       1122222  


Q ss_pred             hhccCCc-cEEEEEEeCCCCC-CHHH-HHHH-HHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           98 GMAKDGI-HAFLVVFSVTNRF-SQEE-ETAV-HRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        98 ~~~~~~~-~~il~v~~~~~~~-s~~~-~~~l-~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                        ..... +++++++|+.... +..+ ..++ .++..........|++++.||+|+...
T Consensus        68 --~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          68 --TLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             --HHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence              22344 9999999998431 1111 2222 222221111112389999999998643

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.42  E-value=5.7e-13  Score=109.41  Aligned_cols=164  Identities=15%  Similarity=0.073  Sum_probs=103.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI--   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~--   93 (228)
                      +++..++|+|+||||||||+++|.|...+.+|    .+......... .........+.+.+.++...+..+++.-..  
T Consensus        28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G----~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~  103 (353)
T TIGR03265        28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG----TIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKN  103 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCCCCce----EEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHh
Confidence            45679999999999999999999999875544    22222211110 001122346667777665544333321100  


Q ss_pred             --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090           94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~  162 (228)
                              ........+..+.--+.-.....+|+|+++++.++++++.+|.   +++   |++.+|...+  .++...++
T Consensus       104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~---llLLDEP~s~LD~~~r--~~l~~~L~  178 (353)
T TIGR03265       104 RGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG---LLLLDEPLSALDARVR--EHLRTEIR  178 (353)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHHHH
Confidence                    0000000011111001111224799999999999999998884   555   9999998877  77777665


Q ss_pred             ccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          163 HEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       163 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +..          +|+..++...|++.+++.+|.+..
T Consensus       179 ~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~  215 (353)
T TIGR03265       179 QLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ  215 (353)
T ss_pred             HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            432          899999999999999999987653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.42  E-value=4.6e-13  Score=104.19  Aligned_cols=160  Identities=17%  Similarity=0.156  Sum_probs=97.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .+......... .  . .......+.+.|.+....+..+...-
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~   98 (232)
T cd03218          23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG----KILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILA   98 (232)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHH
Confidence            346679999999999999999999998765444    22221111100 0  0 00112344555554443222221100


Q ss_pred             --------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           92 --------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        92 --------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                                    .+...+...  +...  ..-.....+|.|+++++.++++++.+|   ++++   |++.+|....  
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~llllDEPt~~LD~~~~--  169 (232)
T cd03218          99 VLEIRGLSKKEREEKLEELLEEF--HITH--LRKSKASSLSGGERRRVEIARALATNP---KFLLLDEPFAGVDPIAV--  169 (232)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEecCCcccCCHHHH--
Confidence                          000111100  1110  011111479999999999999999888   4655   9999998877  


Q ss_pred             hhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          155 KTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       155 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+.++...         +|+...+.+.|+..+++.++.+.
T Consensus       170 ~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~  212 (232)
T cd03218         170 QDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL  212 (232)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence            77776665432         78999999999999999888764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=7.8e-13  Score=108.43  Aligned_cols=161  Identities=13%  Similarity=0.120  Sum_probs=99.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .-+++..++|+|+||||||||+++|+|...+.+|    .+......... .     ........+.+.|.+....+..++
T Consensus        27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~en  102 (343)
T PRK11153         27 HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG----RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDN  102 (343)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHH
Confidence            3456789999999999999999999998765444    22222111100 0     001122345566665543222222


Q ss_pred             HH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           89 VG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        89 ~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      +.              +.....+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|...
T Consensus       103 i~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGq~qRv~lAraL~~~p~---iLlLDEPts~LD~~~  175 (343)
T PRK11153        103 VALPLELAGTPKAEIKARVTELLELV--GLSD--KADRYPAQLSGGQKQRVAIARALASNPK---VLLCDEATSALDPAT  175 (343)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHc--CCch--hhhCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHH
Confidence            10              0011111110  1110  1111124799999999999999998884   555   999999887


Q ss_pred             cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .  ..+.+.+.+..          +|.+..+.+.|+..+++.++.+.
T Consensus       176 ~--~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~  220 (343)
T PRK11153        176 T--RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV  220 (343)
T ss_pred             H--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            7  77777766531          79999999999999999888764

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=3.7e-12  Score=94.00  Aligned_cols=116  Identities=22%  Similarity=0.221  Sum_probs=82.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ++|+++|.+|+|||-|+-..+....-...  ..++..+....... .++  ...++|||.|            ++..+++
T Consensus        15 FKiVliGDS~VGKsnLlsRftrnEF~~~S--ksTIGvef~t~t~~-vd~k~vkaqIWDTAG------------QERyrAi   79 (222)
T KOG0087|consen   15 FKIVLIGDSAVGKSNLLSRFTRNEFSLES--KSTIGVEFATRTVN-VDGKTVKAQIWDTAG------------QERYRAI   79 (222)
T ss_pred             EEEEEeCCCccchhHHHHHhcccccCccc--ccceeEEEEeecee-ecCcEEEEeeecccc------------hhhhccc
Confidence            58999999999999999999877652222  22233333222222 233  3479999999            5555555


Q ss_pred             h-hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           98 G-MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        98 ~-~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      . ..++++...++|.|++.+.+.+.. +||..++.+.....  +++||.||+|+...
T Consensus        80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~l  134 (222)
T KOG0087|consen   80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNHL  134 (222)
T ss_pred             cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhhc
Confidence            4 557899999999999988888765 58888888754443  67789999999864

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.42  E-value=5e-14  Score=104.77  Aligned_cols=168  Identities=15%  Similarity=0.053  Sum_probs=104.2

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe----eeeeCCcEEEEEeCCCCCCCCCCcH
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----TVLKDGQVVNVIDTPGLFDLSAGSE   87 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~iDtpG~~~~~~~~~   87 (228)
                      .+..-.++.+++|+||+|||||||+++|.+...+.+|    .+..+.....    ........-.+++...++.+.+..+
T Consensus        21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G----~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvle   96 (240)
T COG1126          21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG----SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE   96 (240)
T ss_pred             cceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc----eEEECCEeccchhhHHHHHHhcCeecccccccccchHHH
Confidence            3445567889999999999999999999999885555    4444332111    0001112235666666666554433


Q ss_pred             HHHHHHHHHHhh--------c---cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           88 FVGKEIVKCLGM--------A---KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        88 ~~~~~~~~~~~~--------~---~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                      +...-.......        +   ...+...=-.-.....+|+|++|++.++++++-+|.   +++   |.+.+|+.-- 
T Consensus        97 Nv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~---vmLFDEPTSALDPElv-  172 (240)
T COG1126          97 NVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK---VMLFDEPTSALDPELV-  172 (240)
T ss_pred             HHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCC---EEeecCCcccCCHHHH-
Confidence            321111111000        0   000000000111125799999999999999977773   555   8899998765 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       .++.+.+..+.         +|.+.-.-+.+++++++..|.+.
T Consensus       173 -~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ii  215 (240)
T COG1126         173 -GEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII  215 (240)
T ss_pred             -HHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEE
Confidence             67777666654         79999888888988888888554

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.42  E-value=8.4e-13  Score=101.26  Aligned_cols=159  Identities=18%  Similarity=0.156  Sum_probs=95.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+......... .........+.+.|.++...+..++..    
T Consensus        21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G----~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~   96 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG----RVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLS   96 (211)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccc
Confidence            356779999999999999999999998765444    22221111100 000112234445555443222211110    


Q ss_pred             ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                +.+...+...  +...  +.-.....+|.++++++.++++++.+|.   +++   |++.+|....  ..+
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~ia~al~~~p~---llllDEP~~~LD~~~~--~~l  167 (211)
T cd03298          97 PGLKLTAEDRQAIEVALARV--GLAG--LEKRLPGELSGGERQRVALARVLVRDKP---VLLLDEPFAALDPALR--AEM  167 (211)
T ss_pred             cccCccHHHHHHHHHHHHHc--CCHH--HHhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHH
Confidence                      1111111111  1110  1111124799999999999999998884   555   9999999877  777


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      .+.+.+..          +|+...+.+.|++.+++.++.+
T Consensus       168 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i  207 (211)
T cd03298         168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI  207 (211)
T ss_pred             HHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEE
Confidence            77665431          7888888888988888877754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.3e-11  Score=86.48  Aligned_cols=152  Identities=17%  Similarity=0.184  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .+++++|+.|+|||.|+..+.-..+-.  ..+..+..+....-+. -.+...+++|||.|            ++.++.+.
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkD--dssHTiGveFgSrIinVGgK~vKLQIWDTAG------------QErFRSVt   75 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKD--DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG------------QERFRSVT   75 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcc--cccceeeeeecceeeeecCcEEEEEEeeccc------------HHHHHHHH
Confidence            489999999999999999988665522  2222333333222221 12345689999999            55455443


Q ss_pred             -hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           99 -MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        99 -~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                       ..++++...++|.|++++-|.... .||.-++.+.+...  -++++.||-|+...  +++.          ..+..++|
T Consensus        76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~--R~Vt----------flEAs~Fa  141 (214)
T KOG0086|consen   76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE--REVT----------FLEASRFA  141 (214)
T ss_pred             HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh--hhhh----------HHHHHhhh
Confidence             567888999999999988888765 58888888765442  23446699998766  5543          33445666


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLS  202 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~  202 (228)
                      ....+.+...   ++.++++++|.+-
T Consensus       142 qEnel~flET---Sa~TGeNVEEaFl  164 (214)
T KOG0086|consen  142 QENELMFLET---SALTGENVEEAFL  164 (214)
T ss_pred             cccceeeeee---cccccccHHHHHH
Confidence            6665554443   6778899988663

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.42  E-value=1.7e-11  Score=92.50  Aligned_cols=138  Identities=22%  Similarity=0.289  Sum_probs=89.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-----CCCCCcceeeEeEeeeeeC-C--cEEEEEeCCCCCCCCCCcHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTKTCEMKTTVLKD-G--QVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-----~~~~~~t~~~~~~~~~~~~-~--~~~~~iDtpG~~~~~~~~~~   88 (228)
                      ....+|.++|.+|.|||||+|.|+....-.++     ....+.|++....+..... +  -.+.++|||||+|....+..
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            34579999999999999999999876543321     1233455555444333222 2  24899999999998765543


Q ss_pred             HHHHHHHH--------H--------hh--ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCC
Q 027090           89 VGKEIVKC--------L--------GM--AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (228)
Q Consensus        89 ~~~~~~~~--------~--------~~--~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~  149 (228)
                      + +-+.++        +        +.  ..-++||++|++..+ ..+..-+...++-+....      +++-|+.|.|.
T Consensus       124 W-ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDt  196 (336)
T KOG1547|consen  124 W-EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADT  196 (336)
T ss_pred             h-HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeeccc
Confidence            3 111121        1        11  123789999999987 456777777666655442      68889999998


Q ss_pred             CccchhhHHHHhhc
Q 027090          150 LEDHEKTLEDFLGH  163 (228)
Q Consensus       150 ~~~~~~~~~~~~~~  163 (228)
                      ..-  ++-.++.+.
T Consensus       197 lTl--eEr~~Fkqr  208 (336)
T KOG1547|consen  197 LTL--EERSAFKQR  208 (336)
T ss_pred             ccH--HHHHHHHHH
Confidence            876  555555544

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.42  E-value=4.4e-13  Score=107.76  Aligned_cols=165  Identities=18%  Similarity=0.150  Sum_probs=103.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHH---
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVG---   90 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~---   90 (228)
                      .-+++..++|+||||||||||+++|.|...+.+|    .+............. ...-.+++..-++.+.+..++..   
T Consensus        25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G----~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~L  100 (338)
T COG3839          25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG----EILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGL  100 (338)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhh
Confidence            3456679999999999999999999999885554    444433333221122 23345666665555543322210   


Q ss_pred             -------HHHHHHHhhccC--CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           91 -------KEIVKCLGMAKD--GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        91 -------~~~~~~~~~~~~--~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                             .++...+....+  +++-++  -.....+|+|++|++.+++++..+|.   +++   |++.+|..-+  ..+.
T Consensus       101 k~~~~~k~ei~~rV~eva~~L~l~~lL--~r~P~~LSGGQrQRVAlaRAlVr~P~---v~L~DEPlSnLDa~lR--~~mr  173 (338)
T COG3839         101 KLRGVPKAEIDKRVKEVAKLLGLEHLL--NRKPLQLSGGQRQRVALARALVRKPK---VFLLDEPLSNLDAKLR--VLMR  173 (338)
T ss_pred             hhCCCchHHHHHHHHHHHHHcCChhHH--hcCcccCChhhHHHHHHHHHHhcCCC---EEEecCchhHhhHHHH--HHHH
Confidence                   111111111110  112122  12225799999999999999999884   555   8898997655  5555


Q ss_pred             HHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          159 DFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       159 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ..+++..          +|+-.++...++++.++.+|.+...
T Consensus       174 ~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~  215 (338)
T COG3839         174 SEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV  215 (338)
T ss_pred             HHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec
Confidence            5444422          8999999999999999988876543

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.42  E-value=8.4e-13  Score=101.75  Aligned_cols=156  Identities=16%  Similarity=0.086  Sum_probs=90.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-------eCCcEEEEEeCCCCCCCCCCcHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-------KDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      -+++..++|+|+||+|||||+++|+|...+.+|    .+...........       .......+.+.|.++...+..+.
T Consensus        27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~  102 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG----EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALEN  102 (218)
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce----eEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHH
Confidence            356779999999999999999999998764444    2222211110000       01122345555555443222221


Q ss_pred             HH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           89 VG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        89 ~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      ..              +.+...+...  +.+..  .-.....+|.|+++++.++++++.+|   ++++   |++.+|...
T Consensus       103 l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p---~lllLDEP~~~LD~~~  175 (218)
T cd03255         103 VELPLLLAGVPKKERRERAEELLERV--GLGDR--LNHYPSELSGGQQQRVAIARALANDP---KIILADEPTGNLDSET  175 (218)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHc--CCchh--hhcChhhcCHHHHHHHHHHHHHccCC---CEEEEcCCcccCCHHH
Confidence            10              0111111111  11111  11111479999999999999999888   4666   999999887


Q ss_pred             cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeC
Q 027090          152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      .  ..+.+.+.+..          +|....+. .|+..+++.++
T Consensus       176 ~--~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G  216 (218)
T cd03255         176 G--KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDG  216 (218)
T ss_pred             H--HHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCC
Confidence            7  77777666531          56666654 66666666554

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.42  E-value=9.7e-13  Score=107.45  Aligned_cols=160  Identities=14%  Similarity=0.127  Sum_probs=101.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+..........      ........+.+.+.+....+..++.
T Consensus        28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G----~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni  103 (343)
T TIGR02314        28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG----SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNV  103 (343)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHH
Confidence            456779999999999999999999999875544    222222111000      0012234556666665443332222


Q ss_pred             HH--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 GK--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 ~~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      .-              .....+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|....
T Consensus       104 ~~~~~~~~~~~~~~~~~v~e~l~~v--gL~~--~~~~~~~~LSgGqkQRV~IARAL~~~P~---iLLlDEPts~LD~~t~  176 (343)
T TIGR02314       104 ALPLELDNTPKDEIKRKVTELLALV--GLGD--KHDSYPSNLSGGQKQRVAIARALASNPK---VLLCDEATSALDPATT  176 (343)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHc--CCch--hhhCChhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCcccCCHHHH
Confidence            10              001111110  1100  1111125799999999999999998884   666   9999999877


Q ss_pred             chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                        ..+.+.+++..          +|.+..+.+.|++.+++.++.+.
T Consensus       177 --~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv  220 (343)
T TIGR02314       177 --QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI  220 (343)
T ss_pred             --HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence              77777766642          79999999999999999888764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.42  E-value=5.5e-13  Score=104.47  Aligned_cols=160  Identities=15%  Similarity=0.100  Sum_probs=95.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee------eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT------VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+.........      .........+.+.|.+....+..+..
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l  100 (243)
T TIGR02315        25 INPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG----SILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV  100 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCcc----EEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHH
Confidence            356679999999999999999999998765444    22221111000      00011122334444433221111111


Q ss_pred             ----------------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EE
Q 027090           90 ----------------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VF  144 (228)
Q Consensus        90 ----------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~  144 (228)
                                            .+.+...+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---llllDEPt  173 (243)
T TIGR02315       101 LHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLAD--KAYQRADQLSGGQQQRVAIARALAQQPD---LILADEPI  173 (243)
T ss_pred             hhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHh--hhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCc
Confidence                                  01111111111  1110  1111124799999999999999998884   666   99


Q ss_pred             eCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          145 TGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       145 ~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+|....  ..+.+.+.+..          +|....+.+.|+..+++.++.+.
T Consensus       174 ~~LD~~~~--~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~  225 (243)
T TIGR02315       174 ASLDPKTS--KQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV  225 (243)
T ss_pred             ccCCHHHH--HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence            99998876  77776665431          78999988999999999888754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.42  E-value=9.2e-13  Score=101.03  Aligned_cols=157  Identities=20%  Similarity=0.143  Sum_probs=90.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCC-CCCCCCcHHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGL-FDLSAGSEFVG-   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~-~~~~~~~~~~~-   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.........   ........++.+.|.. .......+... 
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~   99 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG----EVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAF   99 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHH
Confidence            346789999999999999999999998764444    22222111100   0001112344444421 11111111110 


Q ss_pred             -------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           91 -------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        91 -------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                                   ......+...  +.+.  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~laral~~~p~---llllDEPt~~LD~~~~--  170 (211)
T cd03225         100 GLENLGLPEEEIEERVEEALELV--GLEG--LRDRSPFTLSGGQKQRVAIAGVLAMDPD---ILLLDEPTAGLDPAGR--  170 (211)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHc--CcHh--hhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--
Confidence                         0111111111  1111  1111225799999999999999998884   655   9999998877  


Q ss_pred             hhHHHHhhccC---------CchHHHHHHhcCCeEEEeeC
Q 027090          155 KTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       155 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      ..+.+.+.+..         +|...++...|+.++++.++
T Consensus       171 ~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G  210 (211)
T cd03225         171 RELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG  210 (211)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            77777776532         67777777778777766554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.42  E-value=9.2e-13  Score=101.23  Aligned_cols=157  Identities=13%  Similarity=0.074  Sum_probs=93.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++.+++|+|+||+|||||++.|+|...+.+|    .+..........      ........+.+.|.++......++..
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~  100 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG----TIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVA  100 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHH
Confidence            46679999999999999999999998764444    222221111000      01112345566666554322222211


Q ss_pred             H--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           91 K--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        91 ~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                      .              .+...+...  +.+.  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|.... 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPt~~LD~~~~-  172 (214)
T cd03292         101 FALEVTGVPPREIRKRVPAALELV--GLSH--KHRALPAELSGGEQQRVAIARAIVNSPT---ILIADEPTGNLDPDTT-  172 (214)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHc--CCHH--HhhCChhhcCHHHHHHHHHHHHHHcCCC---EEEEeCCCCcCCHHHH-
Confidence            0              011111110  1111  1111124799999999999999998884   555   9999998877 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCC
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  186 (228)
                       ..+.+.+++..         +|....+...|+..+++.++.
T Consensus       173 -~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~  213 (214)
T cd03292         173 -WEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK  213 (214)
T ss_pred             -HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence             77777666532         677777777777777665543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=9.1e-12  Score=86.86  Aligned_cols=160  Identities=17%  Similarity=0.202  Sum_probs=103.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      -.+|+++|..|+|||.|++.++....|..-.  ..+..+.-..+.... +...+++|||.|            ++.++.+
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqg--atigvdfmiktvev~gekiklqiwdtag------------qerfrsi   72 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVEVNGEKIKLQIWDTAG------------QERFRSI   72 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCC--ceeeeeEEEEEEEECCeEEEEEEeeccc------------hHHHHHH
Confidence            3689999999999999999998666532211  122333333333322 234589999999            5555544


Q ss_pred             h-hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           98 G-MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        98 ~-~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      . +.++.+|+++++.|++...|..- ..|+..+.....++.  --++|.||+|...+  +++..-+-+    .+.+..  
T Consensus        73 tqsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qige----efs~~q--  142 (213)
T KOG0095|consen   73 TQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIGE----EFSEAQ--  142 (213)
T ss_pred             HHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHHH----HHHHhh--
Confidence            4 45678899999999986666654 468888888876665  45678999999877  777654443    111111  


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHH-HHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLV-NSVIV  209 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~  209 (228)
                        .-     --...+|....+++.|+..+ .+++.
T Consensus       143 --dm-----yfletsakea~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  143 --DM-----YFLETSAKEADNVEKLFLDLACRLIS  170 (213)
T ss_pred             --hh-----hhhhhcccchhhHHHHHHHHHHHHHH
Confidence              00     11234666678898888544 34443

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.42  E-value=1.3e-12  Score=101.57  Aligned_cols=157  Identities=18%  Similarity=0.163  Sum_probs=97.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH-----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK-----   91 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~-----   91 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+........  ........+.+.|++....+..+...-     
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~--~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~   82 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSG----GVILEGKQIT--EPGPDRMVVFQNYSLLPWLTVRENIALAVDRV   82 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECC--CCChhheEEecCcccCCCCCHHHHHHHHHHhc
Confidence            45679999999999999999999999765444    2222111110  001112345566665543222222100     


Q ss_pred             -----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           92 -----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        92 -----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                 .....+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|....  ..+
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~gLD~~~~--~~l  153 (230)
T TIGR01184        83 LPDLSKSERRAIVEEHIALV--GLTE--AADKRPGQLSGGMKQRVAIARALSIRPK---VLLLDEPFGALDALTR--GNL  153 (230)
T ss_pred             ccCCCHHHHHHHHHHHHHHc--CCHH--HHcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCCCcCCCHHHH--HHH
Confidence                       001111100  1110  0111124799999999999999998884   555   9999998877  777


Q ss_pred             HHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          158 EDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       158 ~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+.+.    .      +|.+..+.+.|+..+++.++.+.
T Consensus       154 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~  194 (230)
T TIGR01184       154 QEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA  194 (230)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence            7766542    1      79999999999999988887654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.41  E-value=5.4e-13  Score=102.81  Aligned_cols=158  Identities=20%  Similarity=0.219  Sum_probs=96.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+.........  .........+.+.|.++......+...    
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~  104 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG----FATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAG  104 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc----eEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHH
Confidence            46679999999999999999999998764444    22222211110  001122345566666554333222210    


Q ss_pred             ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                ..+...+...  +...  +.-.....+|.++++++.++++++.+|.   +++   |++.+|....  ..+
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---illlDEPt~~LD~~~~--~~l  175 (218)
T cd03266         105 LYGLKGDELTARLEELADRL--GMEE--LLDRRVGGFSTGMRQKVAIARALVHDPP---VLLLDEPTTGLDVMAT--RAL  175 (218)
T ss_pred             HcCCCHHHHHHHHHHHHHHc--CCHH--HHhhhhhhcCHHHHHHHHHHHHHhcCCC---EEEEcCCCcCCCHHHH--HHH
Confidence                      0001111100  1100  0011114799999999999999998884   555   9999998877  777


Q ss_pred             HHHhhccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090          158 EDFLGHEC---------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       158 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      .+.+.+..         +|...++...|+..+++.++.+
T Consensus       176 ~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i  214 (218)
T cd03266         176 REFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRV  214 (218)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence            77776542         6888888888888888877654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.41  E-value=1.1e-12  Score=102.52  Aligned_cols=160  Identities=18%  Similarity=0.164  Sum_probs=96.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+......... .........+.+.|.+....+..+...    
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  100 (239)
T cd03296          25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSG----TILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLR  100 (239)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhh
Confidence            346679999999999999999999998765444    22221111000 000112234455555443222211110    


Q ss_pred             --------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           91 --------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        91 --------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                    ..+...+...  +...  +.-.....+|.|+++++.++++++.+|   ++++   |++.+|.... 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~llllDEP~~~LD~~~~-  172 (239)
T cd03296         101 VKPRSERPPEAEIRAKVHELLKLV--QLDW--LADRYPAQLSGGQRQRVALARALAVEP---KVLLLDEPFGALDAKVR-  172 (239)
T ss_pred             hccccccCCHHHHHHHHHHHHHHc--CChh--hhhcChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH-
Confidence                          0011111111  1110  011111479999999999999999888   3666   9999998877 


Q ss_pred             hhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       ..+.+.+.+.    .      +|....+...|++.+++.++.+.
T Consensus       173 -~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~  216 (239)
T cd03296         173 -KELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE  216 (239)
T ss_pred             -HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence             7777766543    1      78999888999999998888764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=1.2e-12  Score=108.74  Aligned_cols=160  Identities=14%  Similarity=0.121  Sum_probs=101.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-ee------eCCcEEEEEeCCCCCCCCCCcHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL------KDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~------~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+......... ..      ......++.+.++++...+..++
T Consensus        51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG----~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~en  126 (400)
T PRK10070         51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG----QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDN  126 (400)
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC----EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHH
Confidence            456789999999999999999999998775444    22222211100 00      01123456677776654333222


Q ss_pred             HH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           89 VG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        89 ~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      +.              +.....+...  +.+.  +.-.....+|+|+++++.++++++.+|   +++|   |++.+|...
T Consensus       127 l~~~~~~~~~~~~~~~~~~~e~L~~~--gL~~--~~~~~~~~LSgGq~QRv~LArAL~~~P---~iLLLDEPts~LD~~~  199 (400)
T PRK10070        127 TAFGMELAGINAEERREKALDALRQV--GLEN--YAHSYPDELSGGMRQRVGLARALAINP---DILLMDEAFSALDPLI  199 (400)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHc--CCCh--hhhcCcccCCHHHHHHHHHHHHHhcCC---CEEEEECCCccCCHHH
Confidence            21              0011111111  1111  111222579999999999999999888   4666   999999887


Q ss_pred             cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .  ..+.+.+.+..          +|++.++...|+.++++.++.+.
T Consensus       200 r--~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~  244 (400)
T PRK10070        200 R--TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV  244 (400)
T ss_pred             H--HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            7  77776665431          79999999999999999888754

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.41  E-value=7e-13  Score=102.35  Aligned_cols=159  Identities=15%  Similarity=0.119  Sum_probs=95.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      .++.+++|+|+||+|||||+++|+|...+.+|    .+.........  .........+.+.|.+.......+.+.    
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~   99 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHAR   99 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHH
Confidence            45679999999999999999999998765444    22211111000  000111233445454433222111110    


Q ss_pred             ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                +.+...+...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qr~~la~al~~~p~---llllDEPt~~LD~~~~--~~l  170 (220)
T cd03265         100 LYGVPGAERRERIDELLDFV--GLLE--AADRLVKTYSGGMRRRLEIARSLVHRPE---VLFLDEPTIGLDPQTR--AHV  170 (220)
T ss_pred             HcCCCHHHHHHHHHHHHHHc--CCHH--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCccCCCHHHH--HHH
Confidence                      0111111111  1110  0111114799999999999999998884   655   9999998876  777


Q ss_pred             HHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          158 EDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       158 ~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+.+.    .      +|+...+...|++.+++.++.+.
T Consensus       171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~  211 (220)
T cd03265         171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII  211 (220)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence            7666542    1      78999999999998888888764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.41  E-value=2e-13  Score=104.52  Aligned_cols=158  Identities=20%  Similarity=0.218  Sum_probs=93.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG-----   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~-----   90 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+......... .........+.+.+.+....+..+++.     
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~   99 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG----EITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL   99 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHh
Confidence            46679999999999999999999998765444    22211110000 001112234444454443222222110     


Q ss_pred             -----HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090           91 -----KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        91 -----~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~  162 (228)
                           +.....+...  +...  +.-.....+|.++++++.++.+++.+|   ++++   |++.+|....  ..+.+.+.
T Consensus       100 ~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p---~llllDEPt~~LD~~~~--~~l~~~l~  170 (208)
T cd03268         100 LGIRKKRIDEVLDVV--GLKD--SAKKKVKGFSLGMKQRLGIALALLGNP---DLLILDEPTNGLDPDGI--KELRELIL  170 (208)
T ss_pred             cCCcHHHHHHHHHHc--CCHH--HHhhhHhhCCHHHHHHHHHHHHHhcCC---CEEEECCCcccCCHHHH--HHHHHHHH
Confidence                 0011111100  1110  011112479999999999999999888   4666   9999999877  77776665


Q ss_pred             ccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090          163 HEC---------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       163 ~~~---------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      +..         +|+...+...|+..+++.++.+
T Consensus       171 ~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i  204 (208)
T cd03268         171 SLRDQGITVLISSHLLSEIQKVADRIGIINKGKL  204 (208)
T ss_pred             HHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence            431         7888888888888888877653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=8e-13  Score=103.49  Aligned_cols=160  Identities=11%  Similarity=0.014  Sum_probs=99.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---------eeeeCCcEEEEEeCCCCCCCCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---------TVLKDGQVVNVIDTPGLFDLSAGS   86 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---------~~~~~~~~~~~iDtpG~~~~~~~~   86 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+........         ..........+.+.|.++...+..
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~  100 (242)
T PRK11124         25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG----TLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQ  100 (242)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHH
Confidence            356779999999999999999999998764444    2222221110         000011234455666555432222


Q ss_pred             HHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           87 EFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        87 ~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                      +++..               .....+...  +.+.  +.-.....+|+|+++++.+++++..+|   ++++   |++.+|
T Consensus       101 e~i~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~laral~~~p---~llilDEPt~~LD  173 (242)
T PRK11124        101 QNLIEAPCRVLGLSKDQALARAEKLLERL--RLKP--YADRFPLHLSGGQQQRVAIARALMMEP---QVLLFDEPTAALD  173 (242)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCcCC
Confidence            22110               001111110  1111  111112579999999999999999888   3555   899999


Q ss_pred             CCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          149 DLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ....  ..+.+.+++..         +|+...+.+.|+..+++.++.+.
T Consensus       174 ~~~~--~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~  220 (242)
T PRK11124        174 PEIT--AQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV  220 (242)
T ss_pred             HHHH--HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence            8877  77777776532         78999988899988888888764

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.41  E-value=1.3e-11  Score=107.32  Aligned_cols=113  Identities=19%  Similarity=0.209  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--ee---------------eCCcEEEEEeCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VL---------------KDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~---------------~~~~~~~~iDtpG~~~~   82 (228)
                      ..|+++|+.++|||||+++|.+........  +..|........  ..               ..-..+.++||||..+ 
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~--g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~-   83 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEA--GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA-   83 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccCCC--CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH-
Confidence            489999999999999999998875422111  112211111100  00               0001268999999432 


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~  150 (228)
                                +...+.......|++++|++++.+........+..+...   .  .|+++++||+|..
T Consensus        84 ----------f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~---~--vpiIvviNK~D~~  136 (586)
T PRK04004         84 ----------FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR---K--TPFVVAANKIDRI  136 (586)
T ss_pred             ----------HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcCCc
Confidence                      222222334567999999999876766666666655432   2  2799999999975

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.41  E-value=1.6e-12  Score=98.35  Aligned_cols=144  Identities=17%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCC--cccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      -.++.+++|+|+||+|||||++.|+|..  .+..|    .+..................+.+.|.+.......+.    +
T Consensus        32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G----~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~----i  103 (194)
T cd03213          32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG----EVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRET----L  103 (194)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce----EEEECCEeCchHhhhheEEEccCcccCCCCCcHHHH----H
Confidence            3567899999999999999999999987  54333    222221111100011222344555555433222221    1


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC-----
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC-----  165 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~-----  165 (228)
                       ......    .          .+|.++++++.++++++.++   ++++   |++.+|....  ..+.+.+++..     
T Consensus       104 -~~~~~~----~----------~LS~G~~qrv~laral~~~p---~illlDEP~~~LD~~~~--~~l~~~l~~~~~~~~t  163 (194)
T cd03213         104 -MFAAKL----R----------GLSGGERKRVSIALELVSNP---SLLFLDEPTSGLDSSSA--LQVMSLLRRLADTGRT  163 (194)
T ss_pred             -HHHHHh----c----------cCCHHHHHHHHHHHHHHcCC---CEEEEeCCCcCCCHHHH--HHHHHHHHHHHhCCCE
Confidence             111000    0          79999999999999999888   4666   8899998877  77777666532     


Q ss_pred             ----CchHH-HHHHhcCCeEEEeeCCC
Q 027090          166 ----PKPLK-EILQLCDNRCVLFDNKT  187 (228)
Q Consensus       166 ----~~~~~-~~~~~~~~~~~~~~~~~  187 (228)
                          +|+.. ++.+.|++.+++.++.+
T Consensus       164 iii~sh~~~~~~~~~~d~v~~l~~G~i  190 (194)
T cd03213         164 IICSIHQPSSEIFELFDKLLLLSQGRV  190 (194)
T ss_pred             EEEEecCchHHHHHhcCEEEEEeCCEE
Confidence                57775 56677887777766653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.41  E-value=9.8e-12  Score=108.52  Aligned_cols=164  Identities=16%  Similarity=0.215  Sum_probs=97.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc-ccc---c---------CCCCCcceeeEeEeee----eeCCcEEEEEeCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA---S---------AGSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLF   80 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~---~---------~~~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~~   80 (228)
                      .-++++|+|+.++|||||+..|+...- ...   +         ......|.........    ..+...+.++||||..
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            457999999999999999999965311 000   0         0012233332222111    1124568999999965


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~  160 (228)
                      +.       ..++.+++    ...|++++++|++.+....+...+..+..   ..  .|+++++||+|....   .....
T Consensus        86 dF-------~~~v~~sl----~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~~a---~~~~v  146 (600)
T PRK05433         86 DF-------SYEVSRSL----AACEGALLVVDASQGVEAQTLANVYLALE---ND--LEIIPVLNKIDLPAA---DPERV  146 (600)
T ss_pred             HH-------HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHH---CC--CCEEEEEECCCCCcc---cHHHH
Confidence            42       13333333    35699999999987777666554444332   12  278999999998643   12221


Q ss_pred             hhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .+.     +.+... +..     ...+..||.++.++++|++.|.+.++..
T Consensus       147 ~~e-----i~~~lg-~~~-----~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        147 KQE-----IEDVIG-IDA-----SDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHH-----HHHHhC-CCc-----ceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            222     222211 110     1134568888899999999998888754

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.41  E-value=4.6e-13  Score=102.71  Aligned_cols=156  Identities=15%  Similarity=0.144  Sum_probs=93.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG-----   90 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~-----   90 (228)
                      ++ +++|+|+||+|||||+++|+|...+.+|    .+.........  .........+.+.|.++......+...     
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~   99 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSG----TIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL   99 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCCCCCcc----EEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHH
Confidence            46 9999999999999999999998765444    22211110000  001112234455555443322222211     


Q ss_pred             ---------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           91 ---------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        91 ---------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                               +.+...+...  +....  .-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+.
T Consensus       100 ~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEPt~~LD~~~~--~~l~  170 (211)
T cd03264         100 KGIPSKEVKARVDEVLELV--NLGDR--AKKKIGSLSGGMRRRVGIAQALVGDPS---ILIVDEPTAGLDPEER--IRFR  170 (211)
T ss_pred             hCCCHHHHHHHHHHHHHHC--CCHHH--HhCchhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHH
Confidence                     0011111110  11100  011114799999999999999998884   555   9999999877  8888


Q ss_pred             HHhhccC--------CchHHHHHHhcCCeEEEeeCCC
Q 027090          159 DFLGHEC--------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       159 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      +++++..        +|+...+.+.|++.+++.++.+
T Consensus       171 ~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i  207 (211)
T cd03264         171 NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKL  207 (211)
T ss_pred             HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence            8777653        7888888888888877776653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.41  E-value=1.2e-12  Score=107.62  Aligned_cols=160  Identities=19%  Similarity=0.215  Sum_probs=99.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      .++..++|+|+||||||||+++|+|...+.+|    .+........       ..........+.+.+.++...+..+++
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G----~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl   97 (352)
T PRK11144         22 PAQGITAIFGRSGAGKTSLINAISGLTRPQKG----RIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL   97 (352)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence            45679999999999999999999998765544    2222111100       000112233456666655443332222


Q ss_pred             H--------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           90 G--------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        90 ~--------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                      .        +++...+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|....  ..+.
T Consensus        98 ~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qRvalaraL~~~p~---llLLDEPts~LD~~~~--~~l~  168 (352)
T PRK11144         98 RYGMAKSMVAQFDKIVALL--GIEP--LLDRYPGSLSGGEKQRVAIGRALLTAPE---LLLMDEPLASLDLPRK--RELL  168 (352)
T ss_pred             HhhhhhhhHHHHHHHHHHc--CCch--hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEcCCcccCCHHHH--HHHH
Confidence            1        0111111111  1111  1111124799999999999999998884   665   9999998876  7776


Q ss_pred             HHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          159 DFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       159 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +.+++..          +|+..++...|+..+++.++.+..
T Consensus       169 ~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~  209 (352)
T PRK11144        169 PYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA  209 (352)
T ss_pred             HHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence            6665431          789999999999999998887653

>PRK10908 cell division protein FtsE; Provisional

Probab=99.40  E-value=1.2e-12  Score=101.27  Aligned_cols=158  Identities=15%  Similarity=0.076  Sum_probs=94.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+......... .     ........+.+.|.+.......+++.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~  101 (222)
T PRK10908         26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAG----KIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVA  101 (222)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHH
Confidence            56789999999999999999999998765444    22222111100 0     00111234455554432222111110


Q ss_pred             --------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           91 --------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        91 --------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                    +.+...+...  +...  +.-.....+|.++++++.++++++.+|   ++++   |++.+|.... 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~-  173 (222)
T PRK10908        102 IPLIIAGASGDDIRRRVSAALDKV--GLLD--KAKNFPIQLSGGEQQRVGIARAVVNKP---AVLLADEPTGNLDDALS-  173 (222)
T ss_pred             hHHHhcCCCHHHHHHHHHHHHHHc--CChh--hhhCCchhCCHHHHHHHHHHHHHHcCC---CEEEEeCCCCcCCHHHH-
Confidence                          0111111111  1110  111122579999999999999999888   3555   8999998776 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                       ..+.+.+.+..         +|+...+...|+..+++.++.+
T Consensus       174 -~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i  215 (222)
T PRK10908        174 -EGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL  215 (222)
T ss_pred             -HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence             67766666532         7888888888988888877764

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.40  E-value=1.3e-12  Score=107.26  Aligned_cols=159  Identities=17%  Similarity=0.177  Sum_probs=99.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVG-----   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~-----   90 (228)
                      .++..++|+|+||||||||+++|+|...+.+|    .+........ ..........+.+.+.++...+..++..     
T Consensus        26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G----~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~  101 (353)
T PRK10851         26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG----HIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTV  101 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhh
Confidence            46679999999999999999999998775444    2332221110 0001122345555555554332222211     


Q ss_pred             -------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           91 -------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        91 -------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                                   +.....+...  +...  +.-.....+|+++++++.++++++.+|.   +++   |++.+|....  
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LSgGq~QRvalArAL~~~P~---llLLDEP~s~LD~~~r--  172 (353)
T PRK10851        102 LPRRERPNAAAIKAKVTQLLEMV--QLAH--LADRYPAQLSGGQKQRVALARALAVEPQ---ILLLDEPFGALDAQVR--  172 (353)
T ss_pred             cccccCCCHHHHHHHHHHHHHHc--CCch--hhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH--
Confidence                         1111111111  1110  1111125799999999999999998884   666   9999998876  


Q ss_pred             hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..+.+.+++..          +|+..++...|++.+++.++++.
T Consensus       173 ~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~  216 (353)
T PRK10851        173 KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE  216 (353)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            67766665432          79999999999999999888764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.40  E-value=8e-13  Score=103.49  Aligned_cols=160  Identities=15%  Similarity=0.158  Sum_probs=98.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEFVG-   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~~~-   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+......... .   ........+.+.+.+....+..+.+. 
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~  100 (242)
T TIGR03411        25 VDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG----SVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLEL  100 (242)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC----eEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHH
Confidence            446779999999999999999999998765444    22222211100 0   00111234455555443322221110 


Q ss_pred             ---------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeC
Q 027090           91 ---------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTG  146 (228)
Q Consensus        91 ---------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~  146 (228)
                                           ......+...  +...  ..-.....+|.|+++++.++++++.+|.   +++   |++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Ge~qrv~laral~~~p~---~lllDEPt~~  173 (242)
T TIGR03411       101 ALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLAD--EADRLAGLLSHGQKQWLEIGMLLMQDPK---LLLLDEPVAG  173 (242)
T ss_pred             hhhcccccccccccccHHHHHHHHHHHHHHc--CCch--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEecCCccC
Confidence                                 0111111111  1111  1111124799999999999999998884   555   9999


Q ss_pred             CCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          147 GDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +|....  ..+.+.++.+.        +|....+...|++++++.++.+.
T Consensus       174 LD~~~~--~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~  221 (242)
T TIGR03411       174 MTDEET--EKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL  221 (242)
T ss_pred             CCHHHH--HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence            999877  78887777643        68999988899999998888764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.40  E-value=7.1e-12  Score=102.13  Aligned_cols=175  Identities=17%  Similarity=0.179  Sum_probs=87.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---CcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ..+|+|+|.+|+|||||||+|-|...-..+....   ..|.....+.  ..+..++.+||.||++....+.    +++..
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~pnv~lWDlPG~gt~~f~~----~~Yl~  108 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKFPNVTLWDLPGIGTPNFPP----EEYLK  108 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--H----HHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCCCCCeEEeCCCCCCCCCCH----HHHHH
Confidence            4799999999999999999998754322222221   2233333332  2344568999999987654322    33444


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC-cc----chhh--HHHHhhccCCch
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL-ED----HEKT--LEDFLGHECPKP  168 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~-~~----~~~~--~~~~~~~~~~~~  168 (228)
                      .+..  ...|.+|++.+  .+++..+.+....++.. +    |++++|-||+|.. ..    .++.  -+..+++.+.+-
T Consensus       109 ~~~~--~~yD~fiii~s--~rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c  179 (376)
T PF05049_consen  109 EVKF--YRYDFFIIISS--ERFTENDVQLAKEIQRM-G----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC  179 (376)
T ss_dssp             HTTG--GG-SEEEEEES--SS--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH
T ss_pred             Hccc--cccCEEEEEeC--CCCchhhHHHHHHHHHc-C----CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH
Confidence            3332  35687666555  48888888776666543 2    2699999999951 00    0001  112222211111


Q ss_pred             HHHHH--HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          169 LKEIL--QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       169 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      .+.+.  ..+...+++..+.-..    ..+.+.|.+.+.+-++...
T Consensus       180 ~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  180 LENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-GGG
T ss_pred             HHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHHHH
Confidence            22221  1244566665554332    3678888888877766643

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.40  E-value=1.1e-12  Score=100.71  Aligned_cols=159  Identities=16%  Similarity=0.131  Sum_probs=93.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      -+++..++|+|+||+|||||++.|+|...+.+|    .+......... .........+.+.+.+....+..+...    
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~   98 (213)
T cd03301          23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG----RIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLK   98 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHH
Confidence            356789999999999999999999998765444    22221111100 000111233444454433222221110    


Q ss_pred             ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                +.+...+...  +.+.  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qr~~laral~~~p~---llllDEPt~~LD~~~~--~~l  169 (213)
T cd03301          99 LRKVPKDEIDERVREVAELL--QIEH--LLDRKPKQLSGGQRQRVALGRAIVREPK---VFLMDEPLSNLDAKLR--VQM  169 (213)
T ss_pred             hcCCCHHHHHHHHHHHHHHc--CCHH--HHhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHH
Confidence                      0111111111  1110  1111114799999999999999998884   555   9999998877  777


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      .+.+.+..          +|+...+...|+..+++.++.+
T Consensus       170 ~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~  209 (213)
T cd03301         170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI  209 (213)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence            77665431          6888888888888877776654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.40  E-value=1.4e-12  Score=107.43  Aligned_cols=159  Identities=18%  Similarity=0.228  Sum_probs=99.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      .++..++|+|+||||||||+++|+|...+.+|    .+........       ..........+.+.|.++...+..+++
T Consensus        21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G----~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl   96 (354)
T TIGR02142        21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG----EIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL   96 (354)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHH
Confidence            46679999999999999999999998765444    2222111110       000112234556666665543332222


Q ss_pred             HH------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           90 GK------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        90 ~~------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                      .-            .+...+...  +.+.  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|....  
T Consensus        97 ~~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGqkqRvalAraL~~~p~---lllLDEPts~LD~~~~--  167 (354)
T TIGR02142        97 RYGMKRARPSERRISFERVIELL--GIGH--LLGRLPGRLSGGEKQRVAIGRALLSSPR---LLLMDEPLAALDDPRK--  167 (354)
T ss_pred             HHHhhccChhHHHHHHHHHHHHc--CChh--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCCCcCCCHHHH--
Confidence            10            001111100  1110  1111114799999999999999998884   666   9999998876  


Q ss_pred             hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..+...+++..          +|+..++...|+..+++.++.+.
T Consensus       168 ~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~  211 (354)
T TIGR02142       168 YEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA  211 (354)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence            77666665431          79999999999999999888764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.40  E-value=1.6e-12  Score=102.27  Aligned_cols=161  Identities=14%  Similarity=0.054  Sum_probs=97.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----------eeeCCcEEEEEeCCCCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----------VLKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~~~~~~iDtpG~~~~~~   84 (228)
                      -+++.+++|+|+||+|||||+++|+|...+..|    .+.........           .........+.+.|.+.....
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t  101 (250)
T PRK11264         26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG----TIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRT  101 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCC
Confidence            356779999999999999999999998764444    22211111000           000112234455555543322


Q ss_pred             CcHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeC
Q 027090           85 GSEFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTG  146 (228)
Q Consensus        85 ~~~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~  146 (228)
                      ..+.+..               .....+...  +...  ..-.....+|.|+++++.++++++.+|   ++++   |++.
T Consensus       102 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~Gq~qrv~la~al~~~p---~lllLDEPt~~  174 (250)
T PRK11264        102 VLENIIEGPVIVKGEPKEEATARARELLAKV--GLAG--KETSYPRRLSGGQQQRVAIARALAMRP---EVILFDEPTSA  174 (250)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCcc--hhhCChhhCChHHHHHHHHHHHHhcCC---CEEEEeCCCcc
Confidence            2222100               000111100  1111  111122579999999999999999888   4666   9999


Q ss_pred             CCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          147 GDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +|....  ..+.+++.+..         +|+...+...|++.+++.++.+..
T Consensus       175 LD~~~~--~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~  224 (250)
T PRK11264        175 LDPELV--GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE  224 (250)
T ss_pred             CCHHHH--HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            998877  77777665432         789999888999999998887643

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.40  E-value=4.9e-12  Score=100.04  Aligned_cols=151  Identities=19%  Similarity=0.213  Sum_probs=90.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc---------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS---------   86 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~---------   86 (228)
                      -.++.+++|+|+||+|||||+++|+|...+..|    .+......          ..+...+++.......         
T Consensus        47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G----~I~~~g~~----------~~~~~~~~~~~~~tv~enl~~~~~~  112 (264)
T PRK13546         47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG----KVDRNGEV----------SVIAISAGLSGQLTGIENIEFKMLC  112 (264)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCEE----------eEEecccCCCCCCcHHHHHHHHHHH
Confidence            346779999999999999999999998764444    22221110          0011122222111111         


Q ss_pred             -----HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           87 -----EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        87 -----~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                           +.........+...  +.+..  .-.....+|.|+++++.++.+++.+|.   +++   |++.+|....  ..+.
T Consensus       113 ~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LS~Gq~qrv~Laral~~~p~---iLlLDEPt~gLD~~~~--~~l~  183 (264)
T PRK13546        113 MGFKRKEIKAMTPKIIEFS--ELGEF--IYQPVKKYSSGMRAKLGFSINITVNPD---ILVIDEALSVGDQTFA--QKCL  183 (264)
T ss_pred             cCCCHHHHHHHHHHHHHHc--CCchh--hcCCcccCCHHHHHHHHHHHHHhhCCC---EEEEeCccccCCHHHH--HHHH
Confidence                 11100001111110  11111  111124799999999999999998883   555   9999998765  6666


Q ss_pred             HHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +.+....         +|....+.+.|+..+++.++.+..
T Consensus       184 ~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~  223 (264)
T PRK13546        184 DKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD  223 (264)
T ss_pred             HHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence            6554431         789999988999888888887653

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=6.9e-13  Score=104.67  Aligned_cols=161  Identities=14%  Similarity=0.132  Sum_probs=97.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEFVG-   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~~~-   90 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+......... .  . .......+.+.|.+....+..+... 
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~  103 (255)
T PRK11300         28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG----TILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLV  103 (255)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc----eEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHH
Confidence            356789999999999999999999998765444    22221111100 0  0 0011123445555443322211110 


Q ss_pred             ----------------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE
Q 027090           91 ----------------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV  142 (228)
Q Consensus        91 ----------------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll  142 (228)
                                                  ......+...  +...  +.-.....+|.|+++++.++.+++.+|.   +++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~la~al~~~p~---lll  176 (255)
T PRK11300        104 AQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLE--HANRQAGNLAYGQQRRLEIARCMVTQPE---ILM  176 (255)
T ss_pred             hhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--Chhh--hhhCChhhCCHHHHHHHHHHHHHhcCCC---EEE
Confidence                                        0011111100  1110  1111114799999999999999998884   666


Q ss_pred             ---EEeCCCCCccchhhHHHHhhcc-----C-----CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          143 ---VFTGGDDLEDHEKTLEDFLGHE-----C-----PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       143 ---v~~~~D~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                         |++.+|....  ..+.+.+.+.     .     +|+...+...|+..+++.++.+..
T Consensus       177 lDEPt~~LD~~~~--~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  234 (255)
T PRK11300        177 LDEPAAGLNPKET--KELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA  234 (255)
T ss_pred             EcCCccCCCHHHH--HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence               9999999877  7777777543     1     789999999999999998887653

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.40  E-value=3.6e-12  Score=91.76  Aligned_cols=112  Identities=20%  Similarity=0.069  Sum_probs=78.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      -+++..++|+|+||+|||||+++|+|...+.+|    .+..          ++.                          
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~----------~~~--------------------------   62 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG----IVTW----------GST--------------------------   62 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce----EEEE----------CCe--------------------------
Confidence            356679999999999999999999998653322    1111          110                          


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------C
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------P  166 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~  166 (228)
                               ..+-++.    .+|.++++++.++++++.++   ++++   |++.+|....  ..+.+.+++..      +
T Consensus        63 ---------~~i~~~~----~lS~G~~~rv~laral~~~p---~illlDEP~~~LD~~~~--~~l~~~l~~~~~til~~t  124 (144)
T cd03221          63 ---------VKIGYFE----QLSGGEKMRLALAKLLLENP---NLLLLDEPTNHLDLESI--EALEEALKEYPGTVILVS  124 (144)
T ss_pred             ---------EEEEEEc----cCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH--HHHHHHHHHcCCEEEEEE
Confidence                     0011111    19999999999999999888   3555   8899998877  78877777543      5


Q ss_pred             chHHHHHHhcCCeEEEeeC
Q 027090          167 KPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~  185 (228)
                      |....+...|+..+++.++
T Consensus       125 h~~~~~~~~~d~v~~l~~g  143 (144)
T cd03221         125 HDRYFLDQVATKIIELEDG  143 (144)
T ss_pred             CCHHHHHHhCCEEEEEeCC
Confidence            6777776777766666544

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.39  E-value=1.6e-12  Score=102.70  Aligned_cols=162  Identities=14%  Similarity=0.076  Sum_probs=100.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----------------eeeCCcEEEEEeCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----------------VLKDGQVVNVIDTPGL   79 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~~~~~iDtpG~   79 (228)
                      -.++.+++|+|+||+|||||+++|.|...+.+|    .++........                ........++.+.|.+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l  103 (257)
T PRK10619         28 ANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG----SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL  103 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEEcccccccccccccccchHHHHHhhceEEEecCccc
Confidence            346789999999999999999999998765444    22222211100                0011223455566655


Q ss_pred             CCCCCCcHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--
Q 027090           80 FDLSAGSEFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--  142 (228)
Q Consensus        80 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--  142 (228)
                      .......+++..               .....+...  +....+ .-.....+|.|+++++.++++++.+|.   +++  
T Consensus       104 ~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~-~~~~~~~LS~G~~qrv~laral~~~p~---llllD  177 (257)
T PRK10619        104 WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV--GIDERA-QGKYPVHLSGGQQQRVSIARALAMEPE---VLLFD  177 (257)
T ss_pred             CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCChhh-hhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEe
Confidence            543332222210               011111111  111111 011225799999999999999998884   666  


Q ss_pred             -EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          143 -VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       143 -v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                       |++.+|....  ..+.+.+....         +|+...+...|++.+++.++.+..
T Consensus       178 EPt~~LD~~~~--~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  232 (257)
T PRK10619        178 EPTSALDPELV--GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE  232 (257)
T ss_pred             CCcccCCHHHH--HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence             9999998877  77777665542         789999888999998888887653

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.39  E-value=1.3e-12  Score=100.86  Aligned_cols=160  Identities=18%  Similarity=0.157  Sum_probs=98.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHH--
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGK--   91 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~--   91 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+.........  .........+.+.|.+....+..+....  
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~  100 (220)
T cd03263          25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYA  100 (220)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHH
Confidence            356779999999999999999999998765444    22221111100  0011122455566665543332222100  


Q ss_pred             ------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           92 ------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        92 ------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                                  .+...+...  +...  ..-.....+|.|+++++.++++++.+|.   +++   |++.+|....  +.
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEP~~~LD~~~~--~~  171 (220)
T cd03263         101 RLKGLPKSEIKEEVELLLRVL--GLTD--KANKRARTLSGGMKRKLSLAIALIGGPS---VLLLDEPTSGLDPASR--RA  171 (220)
T ss_pred             HHcCCCHHHHHHHHHHHHHHc--CCHH--HHhChhhhCCHHHHHHHHHHHHHhcCCC---EEEECCCCCCCCHHHH--HH
Confidence                        000111100  1110  0011114799999999999999998884   665   9999998877  77


Q ss_pred             HHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          157 LEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       157 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+++..        +|....+.+.|+..+++.++.+.
T Consensus       172 l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~  211 (220)
T cd03263         172 IWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR  211 (220)
T ss_pred             HHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence            777776543        78888888889988888887654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.39  E-value=1.7e-11  Score=104.18  Aligned_cols=140  Identities=15%  Similarity=0.211  Sum_probs=88.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~   80 (228)
                      ..++..+++++|+.++|||||+++|++.....              ........|.+....... .++..+.++||||..
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~  155 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHA  155 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHH
Confidence            35566889999999999999999998531100              011123344443333222 356678999999932


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~  160 (228)
                                 ++...+......+|++++|+++..+....+++.+.++... +.+   ++++++||+|....  ++..+.
T Consensus       156 -----------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~--~~~~~~  218 (478)
T PLN03126        156 -----------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD--EELLEL  218 (478)
T ss_pred             -----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH--HHHHHH
Confidence                       2333333333477999999999877777777777766543 333   47889999998764  444333


Q ss_pred             hhccCCchHHHHHHhc
Q 027090          161 LGHECPKPLKEILQLC  176 (228)
Q Consensus       161 ~~~~~~~~~~~~~~~~  176 (228)
                      +..    .+.+++..+
T Consensus       219 i~~----~i~~~l~~~  230 (478)
T PLN03126        219 VEL----EVRELLSSY  230 (478)
T ss_pred             HHH----HHHHHHHhc
Confidence            332    255555543

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.39  E-value=9.4e-13  Score=96.84  Aligned_cols=126  Identities=19%  Similarity=0.226  Sum_probs=84.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      -.++..++|+|+||+|||||++.|.|...+..|    .+.          .++..+     ... .    .    .+...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~v~----------~~g~~~-----~~~-~----~----~~~~~   74 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSG----EIL----------VDGKEV-----SFA-S----P----RDARR   74 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEE----------ECCEEC-----CcC-C----H----HHHHh
Confidence            456789999999999999999999998653322    111          111111     000 0    0    01000


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC-------
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC-------  165 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~-------  165 (228)
                               ..+-++.+    +|.++++++.++++++.+|   ++++   |++.+|....  +.+.+.+++..       
T Consensus        75 ---------~~i~~~~q----LS~G~~qrl~laral~~~p---~illlDEP~~~LD~~~~--~~l~~~l~~~~~~~~tii  136 (163)
T cd03216          75 ---------AGIAMVYQ----LSVGERQMVEIARALARNA---RLLILDEPTAALTPAEV--ERLFKVIRRLRAQGVAVI  136 (163)
T ss_pred             ---------cCeEEEEe----cCHHHHHHHHHHHHHhcCC---CEEEEECCCcCCCHHHH--HHHHHHHHHHHHCCCEEE
Confidence                     11223333    9999999999999999888   4666   9999998877  77777776542       


Q ss_pred             --CchHHHHHHhcCCeEEEeeCCC
Q 027090          166 --PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                        +|+...+.+.|+..+++.++.+
T Consensus       137 i~sh~~~~~~~~~d~~~~l~~g~i  160 (163)
T cd03216         137 FISHRLDEVFEIADRVTVLRDGRV  160 (163)
T ss_pred             EEeCCHHHHHHhCCEEEEEECCEE
Confidence              6788888888888877776653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.39  E-value=1.2e-12  Score=108.22  Aligned_cols=164  Identities=17%  Similarity=0.129  Sum_probs=101.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI--   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~--   93 (228)
                      .++..++|+|+||||||||+++|.|...+.+|    .+........ ..........+++.+.++...+..+++.-.+  
T Consensus        38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G----~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~  113 (375)
T PRK09452         38 NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG----RIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRM  113 (375)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhh
Confidence            45679999999999999999999998875444    2222221111 0001122344556666654433333221100  


Q ss_pred             --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090           94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~  162 (228)
                              ...+....+....--+.-.....+|+|+++++.++++++.+|.   +++   |++.+|...+  ..+...++
T Consensus       114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~---llLLDEP~s~LD~~~r--~~l~~~L~  188 (375)
T PRK09452        114 QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK---VLLLDESLSALDYKLR--KQMQNELK  188 (375)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCcCCHHHH--HHHHHHHH
Confidence                    0000000000010001111125799999999999999998884   666   9999998877  77777665


Q ss_pred             ccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          163 HEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       163 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.          +|+..++...|+.++++.+|++..
T Consensus       189 ~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~  225 (375)
T PRK09452        189 ALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ  225 (375)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            532          799999999999999999987653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.39  E-value=3.2e-13  Score=102.83  Aligned_cols=165  Identities=20%  Similarity=0.195  Sum_probs=106.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .-+++..++++|++||||||++++|.+...+.+|    .+.+......   ........-++++--|++.+.+..++. .
T Consensus        23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G----~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNI-a   97 (309)
T COG1125          23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG----EILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI-A   97 (309)
T ss_pred             EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCc----eEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHH-H
Confidence            3456679999999999999999999988775554    3332221111   011122234777878877766544331 1


Q ss_pred             HHHHHHhhc----cCCccEEE---------EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           92 EIVKCLGMA----KDGIHAFL---------VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        92 ~~~~~~~~~----~~~~~~il---------~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                      -+-......    ..+++.++         |.-+....+|+|+++++-+++++..+|   ++++   ||..+|...+  .
T Consensus        98 ~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP---~ilLMDEPFgALDpI~R--~  172 (309)
T COG1125          98 TVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP---PILLMDEPFGALDPITR--K  172 (309)
T ss_pred             hhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC---CeEeecCCccccChhhH--H
Confidence            010110000    01112222         222333579999999999999998888   6888   9999999987  6


Q ss_pred             hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ++.+.+....          +|++++..+..++++++..|.+..
T Consensus       173 ~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q  216 (309)
T COG1125         173 QLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ  216 (309)
T ss_pred             HHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence            6655544433          899999999999999998887653

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.39  E-value=2e-12  Score=99.83  Aligned_cols=165  Identities=19%  Similarity=0.177  Sum_probs=102.8

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe----eeeeCCcEEEEEeCC-----------
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----TVLKDGQVVNVIDTP-----------   77 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~iDtp-----------   77 (228)
                      ...-+++..++|+|+||||||||+++|.|...+.+|.    +........    ..........+++.|           
T Consensus        24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~----v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~   99 (235)
T COG1122          24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE----VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVED   99 (235)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCE----EEECCeeccchhhHHHhhcceEEEEECcccccccCcHHH
Confidence            3445667899999999999999999999998866552    111111100    011112223444444           


Q ss_pred             ----CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCc
Q 027090           78 ----GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLE  151 (228)
Q Consensus        78 ----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~  151 (228)
                          |........++..+....++...  +....  .-.....+|+|+++++.++..+.-.|.  -+++  |++.+|...
T Consensus       100 evafg~~n~g~~~~e~~~rv~~~l~~v--gl~~~--~~r~p~~LSGGqkqRvaIA~vLa~~P~--iliLDEPta~LD~~~  173 (235)
T COG1122         100 EVAFGLENLGLPREEIEERVAEALELV--GLEEL--LDRPPFNLSGGQKQRVAIAGVLAMGPE--ILLLDEPTAGLDPKG  173 (235)
T ss_pred             HHhhchhhcCCCHHHHHHHHHHHHHHc--Cchhh--ccCCccccCCcceeeHHhhHHHHcCCC--EEEEcCCCCCCCHHH
Confidence                22222222222222222222211  11111  122225799999999999999877774  2333  889999988


Q ss_pred             cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  +++.+.+.++.          +|+++.+...|+..+++.++.+..
T Consensus       174 ~--~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~  219 (235)
T COG1122         174 R--RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA  219 (235)
T ss_pred             H--HHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence            7  88887776654          899999999999999999988743

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.39  E-value=1.5e-12  Score=100.55  Aligned_cols=161  Identities=14%  Similarity=0.102  Sum_probs=97.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      -.++..++|+|+||||||||+++|.|...+..|    .++........ .   ........+.+.|.+....+..++..-
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~   98 (222)
T cd03224          23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG----SIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLL   98 (222)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHH
Confidence            456789999999999999999999998764444    23322211100 0   001112344555554443222221100


Q ss_pred             ------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           92 ------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        92 ------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                                  .....+... .....  ..-.....+|.|+++++.++++++.+|   ++++   |++.+|....  ..
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~-~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~--~~  170 (222)
T cd03224          99 GAYARRRAKRKARLERVYELF-PRLKE--RRKQLAGTLSGGEQQMLAIARALMSRP---KLLLLDEPSEGLAPKIV--EE  170 (222)
T ss_pred             HhhhcCchhHHHHHHHHHHHH-Hhhhh--hhhCchhhCCHHHHHHHHHHHHHhcCC---CEEEECCCcccCCHHHH--HH
Confidence                        000011000 00000  001111469999999999999998888   4666   9999999877  77


Q ss_pred             HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+.+..         +|....+...|+..+++.++.+.
T Consensus       171 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  211 (222)
T cd03224         171 IFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV  211 (222)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence            777776542         68888888999988888887754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.39  E-value=1e-12  Score=101.66  Aligned_cols=158  Identities=17%  Similarity=0.167  Sum_probs=95.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH-----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK-----   91 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~-----   91 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+.......... .......+.+.+.+.......+...-     
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~~~~~~~~-~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~   98 (223)
T TIGR03740        24 PKNSVYGLLGPNGAGKSTLLKMITGILRPTSG----EIIFDGHPWTRK-DLHKIGSLIESPPLYENLTARENLKVHTTLL   98 (223)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEecccc-ccccEEEEcCCCCccccCCHHHHHHHHHHHc
Confidence            46679999999999999999999998764444    222211110000 00112344455544432222222100     


Q ss_pred             -----HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090           92 -----EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        92 -----~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~  163 (228)
                           +....+...  +.+.  +.-.....+|.++++++.++.+++.+|   ++++   |++.+|....  +.+.+.+.+
T Consensus        99 ~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~~rv~laral~~~p---~llllDEP~~~LD~~~~--~~l~~~L~~  169 (223)
T TIGR03740        99 GLPDSRIDEVLNIV--DLTN--TGKKKAKQFSLGMKQRLGIAIALLNHP---KLLILDEPTNGLDPIGI--QELRELIRS  169 (223)
T ss_pred             CCCHHHHHHHHHHc--CCcH--HHhhhHhhCCHHHHHHHHHHHHHhcCC---CEEEECCCccCCCHHHH--HHHHHHHHH
Confidence                 000011000  1110  001111469999999999999999888   3665   9999998877  777776665


Q ss_pred             cC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          164 EC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       164 ~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..         +|+...+.+.|++.+.+.++.+.
T Consensus       170 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~  203 (223)
T TIGR03740       170 FPEQGITVILSSHILSEVQQLADHIGIISEGVLG  203 (223)
T ss_pred             HHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence            42         78999888999998888887754

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=3e-12  Score=102.70  Aligned_cols=162  Identities=17%  Similarity=0.082  Sum_probs=98.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCC--CCCCCCCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTP--GLFDLSAG   85 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtp--G~~~~~~~   85 (228)
                      .-.++.+++|+|+||+|||||+++|+|...+.+|    .++.......       ..........+.+.|  .+... ..
T Consensus        28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv  102 (288)
T PRK13643         28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG----KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE-TV  102 (288)
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCc----EEEECCEECccccccccHHHHHhhEEEEecCcchhcccc-hH
Confidence            3456679999999999999999999998775544    2222221110       000111223455555  22221 11


Q ss_pred             cHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           86 SEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        86 ~~~~--------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                      .+++              ...+...+...  +...- +.-.....+|+++++++.++.+++.+|.   ++|   |++.+|
T Consensus       103 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~-~~~~~~~~LSgGqkqrvaiA~aL~~~p~---illLDEPt~gLD  176 (288)
T PRK13643        103 LKDVAFGPQNFGIPKEKAEKIAAEKLEMV--GLADE-FWEKSPFELSGGQMRRVAIAGILAMEPE---VLVLDEPTAGLD  176 (288)
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHc--CCChh-hccCCcccCCHHHHHHHHHHHHHHhCCC---EEEEECCccCCC
Confidence            1111              01111111111  11000 1112225799999999999999998884   555   899999


Q ss_pred             CCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          149 DLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ....  ..+.+.+..+.         +|++..+...|++++++.++.+..
T Consensus       177 ~~~~--~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~  224 (288)
T PRK13643        177 PKAR--IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS  224 (288)
T ss_pred             HHHH--HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            8877  77777665432         799999999999999998887643

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=2.2e-12  Score=101.64  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG-----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~-----   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+........  ........+.+.|.+.......+.+.     
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~--~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~   97 (255)
T PRK11248         24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG----SITLDGKPVE--GPGAERGVVFQNEGLLPWRNVQDNVAFGLQL   97 (255)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECC--CCCCcEEEEeCCCccCCCCcHHHHHHhHHHH
Confidence            456789999999999999999999998765444    2222111100  01111234455555543222222110     


Q ss_pred             ---------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           91 ---------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        91 ---------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                               ..+...+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|....  ..+.
T Consensus        98 ~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qrl~laral~~~p~---lllLDEPt~~LD~~~~--~~l~  168 (255)
T PRK11248         98 AGVEKMQRLEIAHQMLKKV--GLEG--AEKRYIWQLSGGQRQRVGIARALAANPQ---LLLLDEPFGALDAFTR--EQMQ  168 (255)
T ss_pred             cCCCHHHHHHHHHHHHHHc--CChh--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH--HHHH
Confidence                     0011111111  1110  0111124799999999999999998883   655   9999998877  7777


Q ss_pred             HHhhcc----C------CchHHHHHHhcCCeEEEee
Q 027090          159 DFLGHE----C------PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       159 ~~~~~~----~------~~~~~~~~~~~~~~~~~~~  184 (228)
                      +.+.+.    .      +|+...+...|+..+++.+
T Consensus       169 ~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~  204 (255)
T PRK11248        169 TLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP  204 (255)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            776653    1      7999999999998888763

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.38  E-value=4.6e-11  Score=86.59  Aligned_cols=118  Identities=18%  Similarity=0.274  Sum_probs=82.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccc-----cCC---CCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAG---SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~-----~~~---~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      +-+|+|+|+-++||||++++++....+..     ...   .++.|+...........+..+++++|||            
T Consensus        10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG------------   77 (187)
T COG2229          10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG------------   77 (187)
T ss_pred             ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC------------
Confidence            46899999999999999999987763221     111   1123444444444544456799999999            


Q ss_pred             HHHHHHHh-hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           91 KEIVKCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        91 ~~~~~~~~-~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ++.++++. ...+++..++++++.+..........++.+.....  .  |+++..||.|+...
T Consensus        78 q~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~--i--p~vVa~NK~DL~~a  136 (187)
T COG2229          78 QERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP--I--PVVVAINKQDLFDA  136 (187)
T ss_pred             cHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC--C--CEEEEeeccccCCC
Confidence            45555544 44567888888888875666666677777765532  2  79999999999876

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.38  E-value=1.3e-12  Score=100.38  Aligned_cols=154  Identities=10%  Similarity=0.060  Sum_probs=88.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG-----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~-----   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .++.................+.+.|++.......+...     
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~  109 (214)
T PRK13543         34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG----QIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGL  109 (214)
T ss_pred             ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe----eEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHh
Confidence            346779999999999999999999998764444    22222111100001111234445565544322222110     


Q ss_pred             ------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090           91 ------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        91 ------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~  161 (228)
                            +.....+...  +...  +.-.....+|.++++++.++++++.++.   +++   |++.+|....  +.+.+.+
T Consensus       110 ~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPt~~LD~~~~--~~l~~~l  180 (214)
T PRK13543        110 HGRRAKQMPGSALAIV--GLAG--YEDTLVRQLSAGQKKRLALARLWLSPAP---LWLLDEPYANLDLEGI--TLVNRMI  180 (214)
T ss_pred             cCCcHHHHHHHHHHHc--CChh--hccCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHHH
Confidence                  0000111100  1100  0111114799999999999999998884   555   8899998877  7777777


Q ss_pred             hccC---------CchHHHHHHhcCCeEEE
Q 027090          162 GHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       162 ~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      .+..         +|+..++.+.|++.+.+
T Consensus       181 ~~~~~~~~tiii~sH~~~~~~~~~~~i~~l  210 (214)
T PRK13543        181 SAHLRGGGAALVTTHGAYAAPPVRTRMLTL  210 (214)
T ss_pred             HHHHhCCCEEEEEecChhhhhhhcceEEEE
Confidence            6421         56777777777665544

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.38  E-value=3.6e-12  Score=94.68  Aligned_cols=133  Identities=17%  Similarity=0.161  Sum_probs=82.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      -+++..++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.|.+... .    . .+
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t----v-~~   94 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPNELGDHVGYLPQDDELFSG-S----I-AE   94 (173)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCC----eEEECCEEcccCCHHHHHhheEEECCCCccccC-c----H-HH
Confidence            346679999999999999999999998764433    22221111100   0001111233333333221 0    0 10


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC----  165 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~----  165 (228)
                      .                      -+|.++++++.++++++.++.   +++   |++.+|....  ..+.+.+....    
T Consensus        95 ~----------------------lLS~G~~qrv~la~al~~~p~---~lllDEPt~~LD~~~~--~~l~~~l~~~~~~~~  147 (173)
T cd03246          95 N----------------------ILSGGQRQRLGLARALYGNPR---ILVLDEPNSHLDVEGE--RALNQAIAALKAAGA  147 (173)
T ss_pred             H----------------------CcCHHHHHHHHHHHHHhcCCC---EEEEECCccccCHHHH--HHHHHHHHHHHhCCC
Confidence            0                      089999999999999998884   665   9999999877  77777766532    


Q ss_pred             -----CchHHHHHHhcCCeEEEeeCC
Q 027090          166 -----PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       166 -----~~~~~~~~~~~~~~~~~~~~~  186 (228)
                           +|+...+ ..|+..+++.++.
T Consensus       148 tii~~sh~~~~~-~~~d~v~~l~~G~  172 (173)
T cd03246         148 TRIVIAHRPETL-ASADRILVLEDGR  172 (173)
T ss_pred             EEEEEeCCHHHH-HhCCEEEEEECCC
Confidence                 5666655 4677666665543

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.38  E-value=1.8e-12  Score=100.54  Aligned_cols=157  Identities=18%  Similarity=0.138  Sum_probs=92.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee------e-CCcEEEEEeCCCCCCCCCCcHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------K-DGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------~-~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+...........      . ......+.+.|.+.......+++
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l  109 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLDDGSSG----EVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENV  109 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe----eEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHH
Confidence            46789999999999999999999998765444    2222111110000      0 01223445556554432222211


Q ss_pred             H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      .              +.+...+...  +...  +.-.....+|.|+++++.++++++.++.   +++   |++.+|....
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Ge~qrl~la~al~~~p~---llllDEPt~~LD~~~~  182 (228)
T PRK10584        110 ELPALLRGESSRQSRNGAKALLEQL--GLGK--RLDHLPAQLSGGEQQRVALARAFNGRPD---VLFADEPTGNLDRQTG  182 (228)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHc--CCHh--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCCHHHH
Confidence            0              1111111111  1110  1111124799999999999999998884   555   9999998877


Q ss_pred             chhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCC
Q 027090          153 HEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       153 ~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                        ..+.+.+.+.    .      +|+...+ ..|+..+++.++.+
T Consensus       183 --~~l~~~l~~~~~~~~~tii~~sH~~~~~-~~~d~i~~l~~g~i  224 (228)
T PRK10584        183 --DKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNGQL  224 (228)
T ss_pred             --HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEE
Confidence              7777777442    1      6777766 45877777766654

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=2.2e-12  Score=106.80  Aligned_cols=164  Identities=11%  Similarity=0.041  Sum_probs=100.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI--   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~--   93 (228)
                      .++..++|+|+||||||||+++|.|...+..|    .+........ ..........+.+.+.++...+..+++.-..  
T Consensus        43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~  118 (377)
T PRK11607         43 YKGEIFALLGASGCGKSTLLRMLAGFEQPTAG----QIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQ  118 (377)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999999875544    2222221110 0001122345667777665544333321100  


Q ss_pred             --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090           94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~  162 (228)
                              .............--+.-.....+|+++++++.+++++..+|.   +++   |++.+|....  ..+...+.
T Consensus       119 ~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~---lLLLDEP~s~LD~~~r--~~l~~~l~  193 (377)
T PRK11607        119 DKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK---LLLLDEPMGALDKKLR--DRMQLEVV  193 (377)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHHHH
Confidence                    0000000011111111111124799999999999999998884   666   9999998766  66654433


Q ss_pred             cc----C------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          163 HE----C------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       163 ~~----~------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +.    .      +|+..++...|++.+++.++++..
T Consensus       194 ~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~  230 (377)
T PRK11607        194 DILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ  230 (377)
T ss_pred             HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE
Confidence            32    2      899999999999999998887643

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.37  E-value=2.5e-12  Score=98.83  Aligned_cols=155  Identities=17%  Similarity=0.147  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCCCCCCCCcHHHHH-
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGLFDLSAGSEFVGK-   91 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~~~~~~~~~~~~~-   91 (228)
                      ..++|+|+||+|||||+++|+|...+.+|    .+........       ..........+.+.+.+.......+...- 
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~   99 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEKPDGG----TIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFG   99 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHH
Confidence            69999999999999999999998765444    2222111110       00011123455666665543322222110 


Q ss_pred             -----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           92 -----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        92 -----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                 .+...+...  +...  ..-.....+|.|+++++.++++++.+|.   +++   |++.+|....  +.+
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~p~---llllDEPt~~LD~~~~--~~l  170 (214)
T cd03297         100 LKRKRNREDRISVDELLDLL--GLDH--LLNRYPAQLSGGEKQRVALARALAAQPE---LLLLDEPFSALDRALR--LQL  170 (214)
T ss_pred             HhhCCHHHHHHHHHHHHHHc--CCHh--HhhcCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHH
Confidence                       011111111  1110  0111124799999999999999998884   555   9999998877  777


Q ss_pred             HHHhhcc-----C-----CchHHHHHHhcCCeEEEeeCCC
Q 027090          158 EDFLGHE-----C-----PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       158 ~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      .+.+.+.     .     +|+...+...|+..+++.++.+
T Consensus       171 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i  210 (214)
T cd03297         171 LPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL  210 (214)
T ss_pred             HHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence            7766542     1     7888888888988888877754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.37  E-value=4.3e-12  Score=93.72  Aligned_cols=67  Identities=13%  Similarity=0.220  Sum_probs=41.8

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCC
Q 027090           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (228)
Q Consensus        70 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~  147 (228)
                      .+.++||||+.+......   +.+.+++    +..|++++|+++...++..+...+........    ..+++|+||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~---~~~~~~~----~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~----~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHT---EITEEYL----PKADVVIFVVDANQDLTESDMEFLKQMLDPDK----SRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTS---HHHHHHH----STTEEEEEEEETTSTGGGHHHHHHHHHHTTTC----SSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhH---HHHHHhh----ccCCEEEEEeccCcccchHHHHHHHHHhcCCC----CeEEEEEcCC
Confidence            479999999977433222   2223333    46699999999986666666555444433211    2488899985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.37  E-value=2.5e-12  Score=100.98  Aligned_cols=165  Identities=13%  Similarity=0.105  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||+|||||+++|+|...+. .....+.++........     .........+.+.|.+.. ....++.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l  102 (247)
T TIGR00972        24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNI  102 (247)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHH
Confidence            3567899999999999999999999987643 00002222222211100     000112234555565544 2222221


Q ss_pred             H---------------HHHHHHHhhccCCccEE--EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           90 G---------------KEIVKCLGMAKDGIHAF--LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        90 ~---------------~~~~~~~~~~~~~~~~i--l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      .               +.....+...  +....  -..-.....+|.|+++++.+++++..+|.   +++   |++.+|.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~---llllDEPt~~LD~  177 (247)
T TIGR00972       103 AYGPRLHGIKDKKELDEIVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPE---VLLLDEPTSALDP  177 (247)
T ss_pred             HhHHHhcCCCCHHHHHHHHHHHHHHc--CCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCH
Confidence            1               0001111110  11100  01112225799999999999999998884   555   8999998


Q ss_pred             CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ...  ..+.+.+.+..        +|....+...|+..+++.++.+.
T Consensus       178 ~~~--~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~  222 (247)
T TIGR00972       178 IAT--GKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV  222 (247)
T ss_pred             HHH--HHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            877  77777666543        78999999999999898888764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.37  E-value=3.2e-12  Score=98.18  Aligned_cols=161  Identities=18%  Similarity=0.213  Sum_probs=97.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHH--
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGK--   91 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~--   91 (228)
                      .-.++.+++|+|+||+|||||+++|+|...+.+|    .+........ ..........+.+.|.++...+..++...  
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~   95 (213)
T TIGR01277        20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG----SIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGL   95 (213)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHh
Confidence            3346789999999999999999999998765444    2222111100 00011223455566665543222222210  


Q ss_pred             ------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           92 ------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        92 ------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                                  .+...+...  +...  +.-.....+|.++++++.++++++.+|   ++++   |++.+|....  ..
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p---~llllDEPt~~LD~~~~--~~  166 (213)
T TIGR01277        96 HPGLKLNAEQQEKVVDAAQQV--GIAD--YLDRLPEQLSGGQRQRVALARCLVRPN---PILLLDEPFSALDPLLR--EE  166 (213)
T ss_pred             hccCCccHHHHHHHHHHHHHc--CcHH--HhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHHHH--HH
Confidence                        011111110  1110  111112479999999999999998887   3665   9999998876  76


Q ss_pred             HHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          157 LEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       157 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+.+..          +|....+.+.|+..+++.++.+.
T Consensus       167 ~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~  208 (213)
T TIGR01277       167 MLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK  208 (213)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE
Confidence            666555431          68888888888888888777643

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.37  E-value=9.7e-12  Score=105.12  Aligned_cols=118  Identities=19%  Similarity=0.218  Sum_probs=75.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc-c----------------------------ccCCCCCcceeeEeEeeeee
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-K----------------------------ASAGSSGVTKTCEMKTTVLK   66 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~----------------------------~~~~~~~~t~~~~~~~~~~~   66 (228)
                      .++..+++++|+.++|||||+.+|+...-. .                            ........|.+....... .
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~   82 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-T   82 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-c
Confidence            345578999999999999999988642100 0                            000122344444433332 4


Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCcccccc
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDY  139 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------s~~~~~~l~~~~~~~~~~~~~~  139 (228)
                      ++..+.++||||..           ++...+......+|.+++|+++..+.       ....++.+.++..+ +-+   +
T Consensus        83 ~~~~i~lIDtPGh~-----------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi~---~  147 (446)
T PTZ00141         83 PKYYFTIIDAPGHR-----------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GVK---Q  147 (446)
T ss_pred             CCeEEEEEECCChH-----------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CCC---e
Confidence            56779999999932           33444444445789999999998554       24555555555443 433   5


Q ss_pred             EEEEEeCCCC
Q 027090          140 MIVVFTGGDD  149 (228)
Q Consensus       140 ~llv~~~~D~  149 (228)
                      +++++||+|.
T Consensus       148 iiv~vNKmD~  157 (446)
T PTZ00141        148 MIVCINKMDD  157 (446)
T ss_pred             EEEEEEcccc
Confidence            8889999994

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.37  E-value=2.4e-12  Score=100.81  Aligned_cols=163  Identities=17%  Similarity=0.169  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHHH--
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVG--   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~~--   90 (228)
                      -.++..++|+|+||+|||||+++|+|...+..|    .+.........   .........+.+.|.+....+..+++.  
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~   99 (242)
T cd03295          24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG----EIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALV   99 (242)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHH
Confidence            356779999999999999999999998764444    22221111000   001112234555565554322222211  


Q ss_pred             ------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           91 ------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        91 ------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                                  ......+...  +...--+.-.....+|.|+++++.++++++.+|   ++++   |++.+|....  .
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~--~  172 (242)
T cd03295         100 PKLLKWPKEKIRERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAADP---PLLLMDEPFGALDPITR--D  172 (242)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC---CEEEecCCcccCCHHHH--H
Confidence                        0011111110  111000111112479999999999999999888   4666   9999998876  6


Q ss_pred             hHHHHhhcc-----C-----CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          156 TLEDFLGHE-----C-----PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       156 ~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.+.+...     .     +|...++...|+..+++.++.+..
T Consensus       173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  216 (242)
T cd03295         173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ  216 (242)
T ss_pred             HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            766666543     1     789999999999999988887643

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.37  E-value=2.2e-12  Score=100.85  Aligned_cols=160  Identities=14%  Similarity=0.073  Sum_probs=97.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.........     .........+.+.+.+.......++..
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~   99 (240)
T PRK09493         24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG----DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVM   99 (240)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHH
Confidence            346789999999999999999999998764444    22222111100     000111234455555443222211110


Q ss_pred             ---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           91 ---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        91 ---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                                     +.+...+...  +...  +.-.....+|.|+++++.++++++.+|   ++++   |++.+|....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~la~al~~~p---~llllDEP~~~LD~~~~  172 (240)
T PRK09493        100 FGPLRVRGASKEEAEKQARELLAKV--GLAE--RAHHYPSELSGGQQQRVAIARALAVKP---KLMLFDEPTSALDPELR  172 (240)
T ss_pred             hHHHHhcCCCHHHHHHHHHHHHHHc--CChH--HHhcChhhcCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH
Confidence                           0011111110  1110  111111479999999999999999888   4666   9999999877


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                        ..+.+++....         +|+...+...|+..+++.++.+.
T Consensus       173 --~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  215 (240)
T PRK09493        173 --HEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA  215 (240)
T ss_pred             --HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence              77777775442         78999998899999999888764

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.37  E-value=1.9e-11  Score=85.18  Aligned_cols=157  Identities=18%  Similarity=0.226  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL-G   98 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~-~   98 (228)
                      ..+|+|.+|+|||+|+-.+.....  ++....++..+....+... .....++++||+|            +|.++-+ .
T Consensus        10 kllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG------------qErFrtits   75 (198)
T KOG0079|consen   10 KLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAG------------QERFRTITS   75 (198)
T ss_pred             HHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeecCCcEEEEEEeeccc------------HHHHHHHHH
Confidence            568999999999999998876644  3322222233333333321 2234589999999            5555544 4


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ..+++.|.+++|.|+++.-|... ++||+.+.+.+..-   |-+||.||.|...+  +.+...-       .+......+
T Consensus        76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv---~~vLVGNK~d~~~R--rvV~t~d-------Ar~~A~~mg  143 (198)
T KOG0079|consen   76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSV---PKVLVGNKNDDPER--RVVDTED-------ARAFALQMG  143 (198)
T ss_pred             HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccc---cceecccCCCCccc--eeeehHH-------HHHHHHhcC
Confidence            56789999999999998778776 46888888875433   78999999998876  4433211       111111111


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                            -.....|++...++++-+..|.+.+-
T Consensus       144 ------ie~FETSaKe~~NvE~mF~cit~qvl  169 (198)
T KOG0079|consen  144 ------IELFETSAKENENVEAMFHCITKQVL  169 (198)
T ss_pred             ------chheehhhhhcccchHHHHHHHHHHH
Confidence                  01223456666788887776655443

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.37  E-value=1.4e-12  Score=100.23  Aligned_cols=155  Identities=14%  Similarity=0.122  Sum_probs=89.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC--CCCc-------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL--SAGS-------   86 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~--~~~~-------   86 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+........  ........+.+.|.+...  .+..       
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~   95 (213)
T cd03235          22 VKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG----SIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGL   95 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC----EEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhcc
Confidence            356779999999999999999999998765444    2221110000  001111222332222100  0000       


Q ss_pred             -----------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           87 -----------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        87 -----------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                                 ....+.+...+...  +...  +.-.....+|.|+++++.+++++..+|.   +++   |++.+|....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---llllDEPt~~LD~~~~  168 (213)
T cd03235          96 YGHKGLFRRLSKADKAKVDEALERV--GLSE--LADRQIGELSGGQQQRVLLARALVQDPD---LLLLDEPFAGVDPKTQ  168 (213)
T ss_pred             ccccccccCCCHHHHHHHHHHHHHc--CCHH--HHhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH
Confidence                       11111111222111  1110  0111124799999999999999998883   655   9999998877


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeC
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  185 (228)
                        ..+.+.+.+..         +|+...+.+.|+..+++.++
T Consensus       169 --~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~  208 (213)
T cd03235         169 --EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT  208 (213)
T ss_pred             --HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence              77777666532         68888888888877777554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.36  E-value=2.8e-12  Score=99.74  Aligned_cols=160  Identities=18%  Similarity=0.237  Sum_probs=95.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      -.++.+++|+|+||+|||||++.|+|...+.+|    .+......... ........++.+.|+++......+++.    
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~   97 (232)
T PRK10771         22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASG----SLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLN   97 (232)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccc
Confidence            346679999999999999999999998765444    22221111000 000111234455555443222111110    


Q ss_pred             ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                +.+...+...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---lllLDEP~~gLD~~~~--~~~  168 (232)
T PRK10771         98 PGLKLNAAQREKLHAIARQM--GIED--LLARLPGQLSGGQRQRVALARCLVREQP---ILLLDEPFSALDPALR--QEM  168 (232)
T ss_pred             cccCCCHHHHHHHHHHHHHc--CcHH--HHhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHH
Confidence                      1111111111  1110  1111124799999999999999998883   555   8999998876  666


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+.+..          +|....+.+.|++.+++.++.+.
T Consensus       169 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~  209 (232)
T PRK10771        169 LTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA  209 (232)
T ss_pred             HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            66555421          68889888899988888888764

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.36  E-value=2.6e-12  Score=105.79  Aligned_cols=164  Identities=11%  Similarity=0.067  Sum_probs=100.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccc--cCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--SAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~--~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .++..++|+|+||||||||+++|.|...+.+  |    .+........ ..........+++.+.++...+..+++.--+
T Consensus        29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G----~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l  104 (362)
T TIGR03258        29 EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG----RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGL  104 (362)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCE----EEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHH
Confidence            4567999999999999999999999877544  4    2222211110 0001122345667676665444333321000


Q ss_pred             ----------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090           94 ----------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        94 ----------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~  160 (228)
                                ........+....--+.-.....+|+++++++.++++++.+|.   +++   |++.+|....  .++...
T Consensus       105 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~---llLLDEP~s~LD~~~r--~~l~~~  179 (362)
T TIGR03258       105 RAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD---VLLLDEPLSALDANIR--ANMREE  179 (362)
T ss_pred             HHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCccccCCHHHH--HHHHHH
Confidence                      0000000000010001111125799999999999999998884   666   9999998876  666665


Q ss_pred             hhcc-----C------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          161 LGHE-----C------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       161 ~~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +++.     .      +|+..++...|++++++.++.+..
T Consensus       180 l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~  219 (362)
T TIGR03258       180 IAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA  219 (362)
T ss_pred             HHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            5432     1      799999999999999998887643

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.36  E-value=3.9e-12  Score=101.08  Aligned_cols=164  Identities=14%  Similarity=0.117  Sum_probs=97.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+......... .     ........+.+.+.+....+..+++
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl  105 (269)
T PRK11831         30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG----EILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNV  105 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHH
Confidence            345679999999999999999999998764444    22222111100 0     0011223455666655432222222


Q ss_pred             HHHHHH-----------HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           90 GKEIVK-----------CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        90 ~~~~~~-----------~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                      .-....           ...........--+.-.....+|+|+++++.++++++.+|   ++++   |++.+|....  .
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p---~lllLDEPt~~LD~~~~--~  180 (269)
T PRK11831        106 AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP---DLIMFDEPFVGQDPITM--G  180 (269)
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHHHH--H
Confidence            100000           0000000011000001111479999999999999999888   3655   9999998877  7


Q ss_pred             hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+.+.+..          +|++..+...|+..+++.++.+.
T Consensus       181 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~  223 (269)
T PRK11831        181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV  223 (269)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE
Confidence            7766665431          78999999999998888887654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.36  E-value=4.4e-12  Score=104.78  Aligned_cols=165  Identities=16%  Similarity=0.090  Sum_probs=102.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE--eeee---------eCCcEEEEEeCCCCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVL---------KDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~---------~~~~~~~~iDtpG~~~~~~   84 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+.......  ....         .......+++.++++...+
T Consensus        47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G----~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~T  122 (382)
T TIGR03415        47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG----SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLT  122 (382)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc----EEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCc
Confidence            346679999999999999999999998775544    333322100  0000         0123356677777766444


Q ss_pred             CcHHHHHHH----------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           85 GSEFVGKEI----------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        85 ~~~~~~~~~----------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      ..+++.-..          ........+....--+.-.....+|+++++++.+++++..+|.   +++   |++.+|...
T Consensus       123 v~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~---ILLlDEPts~LD~~~  199 (382)
T TIGR03415       123 VEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD---ILLMDEPFSALDPLI  199 (382)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEECCCccCCHHH
Confidence            333321100          0000000011111001111114699999999999999998884   666   999999887


Q ss_pred             cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  .++.+.+.++.          +|++.++.+.|++++++.++.+..
T Consensus       200 r--~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~  245 (382)
T TIGR03415       200 R--TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ  245 (382)
T ss_pred             H--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            7  77776664431          799999999999999998887653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.36  E-value=9.7e-13  Score=112.45  Aligned_cols=160  Identities=13%  Similarity=-0.016  Sum_probs=101.6

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC-cEEEEEeCCCCCCCCCCcHHHHH
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      +..-..+.+|+|+|+||+|||||++.|.|...+.+|......+....++.+....- ..-+++|.---.   .+.. ...
T Consensus       342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~---~~~~-~e~  417 (530)
T COG0488         342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEG---FPDG-DEQ  417 (530)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhh---Cccc-cHH
Confidence            34455678999999999999999999998877665543444445555544321000 001111110000   0000 013


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---  165 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---  165 (228)
                      ++..++....-..+.+  .-.+ ..+|+|++.++.++..++.+|   +++|   |.|++|....  +.+++.+..+.   
T Consensus       418 ~~r~~L~~f~F~~~~~--~~~v-~~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe~aL~~f~Gtv  489 (530)
T COG0488         418 EVRAYLGRFGFTGEDQ--EKPV-GVLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALEEALLDFEGTV  489 (530)
T ss_pred             HHHHHHHHcCCChHHH--hCch-hhcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHHHHHHhCCCeE
Confidence            3344443321111111  1122 479999999999999888777   5666   9999999988  99999999987   


Q ss_pred             ---CchHHHHHHhcCCeEEEee
Q 027090          166 ---PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       166 ---~~~~~~~~~~~~~~~~~~~  184 (228)
                         +|+..-+...|..++.+.+
T Consensus       490 l~VSHDr~Fl~~va~~i~~~~~  511 (530)
T COG0488         490 LLVSHDRYFLDRVATRIWLVED  511 (530)
T ss_pred             EEEeCCHHHHHhhcceEEEEcC
Confidence               9999999999988777765

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.36  E-value=3.6e-12  Score=98.46  Aligned_cols=158  Identities=15%  Similarity=0.088  Sum_probs=90.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-ee-----eC-CcEEEEEeCCCCCCCCCCcH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL-----KD-GQVVNVIDTPGLFDLSAGSE   87 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~-----~~-~~~~~~iDtpG~~~~~~~~~   87 (228)
                      .-.++.+++|+|+||+|||||+++|+|...+.+|    .+......... ..     .. .....+.+.|.+.......+
T Consensus        27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~  102 (221)
T TIGR02211        27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG----EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALE  102 (221)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHH
Confidence            3356789999999999999999999998764444    22221111100 00     00 11234455555544322222


Q ss_pred             HHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           88 FVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        88 ~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      ...              +.+...+...  +.+.  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|..
T Consensus       103 ~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---illlDEPt~~LD~~  175 (221)
T TIGR02211       103 NVAMPLLIGKKSVKEAKERAYEMLEKV--GLEH--RINHRPSELSGGERQRVAIARALVNQPS---LVLADEPTGNLDNN  175 (221)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHc--CChh--hhhCChhhCCHHHHHHHHHHHHHhCCCC---EEEEeCCCCcCCHH
Confidence            210              0011111110  1111  1111125799999999999999998883   666   89999988


Q ss_pred             ccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCC
Q 027090          151 EDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       151 ~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~  186 (228)
                      ..  ..+.+.+...    .      +|+...+ ..|+..+++.++.
T Consensus       176 ~~--~~l~~~l~~~~~~~~~tii~~tH~~~~~-~~~d~v~~l~~G~  218 (221)
T TIGR02211       176 NA--KIIFDLMLELNRELNTSFLVVTHDLELA-KKLDRVLEMKDGQ  218 (221)
T ss_pred             HH--HHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEEEeCCE
Confidence            77  7777766542    1      6777765 4476666665554

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.36  E-value=2.5e-12  Score=102.05  Aligned_cols=160  Identities=10%  Similarity=0.075  Sum_probs=94.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV---   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~---   89 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.+++.......++.   
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  109 (265)
T PRK10575         34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG----EILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG  109 (265)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC----EEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhC
Confidence            346789999999999999999999998764443    22221111000   00011122333433332221111111   


Q ss_pred             ---------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           90 ---------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        90 ---------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                                     .+.....+...  +...  +.-.....+|+|+++++.+++++..+|   +++|   |++.+|...
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~laral~~~p---~lllLDEPt~~LD~~~  182 (265)
T PRK10575        110 RYPWHGALGRFGAADREKVEEAISLV--GLKP--LAHRLVDSLSGGERQRAWIAMLVAQDS---RCLLLDEPTSALDIAH  182 (265)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHc--CCHH--HhcCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHH
Confidence                           01111111111  1110  111112479999999999999999888   4666   999999887


Q ss_pred             cchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          152 DHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       152 ~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .  +.+.+.+...    .      +|.+..+.+.|+..+++.++.+.
T Consensus       183 ~--~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~  227 (265)
T PRK10575        183 Q--VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI  227 (265)
T ss_pred             H--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence            6  6666655443    1      78999999999999888888764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.36  E-value=4.1e-12  Score=98.54  Aligned_cols=164  Identities=17%  Similarity=0.143  Sum_probs=94.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCCC--CCCCCCCc
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTPG--LFDLSAGS   86 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtpG--~~~~~~~~   86 (228)
                      .-+++..++|+|+||+|||||++.|+|...+.+|    .+......... .     ........+.+.|.  +....+..
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~  102 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSG----SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIG  102 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHH
Confidence            3456789999999999999999999998765444    22222111100 0     01112234455552  22211111


Q ss_pred             HHHHH-----------HHHHHH-hhccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           87 EFVGK-----------EIVKCL-GMAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        87 ~~~~~-----------~~~~~~-~~~~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      +.+..           +..... .......... -+.-.....+|.|+++++.++++++.+|   ++++   |++.+|..
T Consensus       103 ~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p---~lllLDEPt~~LD~~  179 (228)
T cd03257         103 EQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNP---KLLIADEPTSALDVS  179 (228)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCC---CEEEecCCCCCCCHH
Confidence            11100           000000 0000011110 0111112479999999999999999888   4666   99999988


Q ss_pred             ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090          151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      ..  ..+.+.+.+..          +|+...+...|+..+++.++.+
T Consensus       180 ~~--~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i  224 (228)
T cd03257         180 VQ--AQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI  224 (228)
T ss_pred             HH--HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEE
Confidence            76  77776665431          6888888888888888877654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.36  E-value=2.7e-12  Score=102.96  Aligned_cols=164  Identities=16%  Similarity=0.045  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-------eeeCCcEEEEEeCCC--CCCCCCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-------VLKDGQVVNVIDTPG--LFDLSAG   85 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~~~iDtpG--~~~~~~~   85 (228)
                      .-.++..++|+|+||+|||||+++|+|...+.+|    .+.........       .........+.+.|.  +.. .+.
T Consensus        29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~-~tv  103 (287)
T PRK13641         29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG----TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE-NTV  103 (287)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEECccccccchHHHHHhceEEEEeChhhhhcc-chH
Confidence            3456789999999999999999999998775444    33332221100       001112234555552  221 111


Q ss_pred             cHHHHH----------HHHHHHhhccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           86 SEFVGK----------EIVKCLGMAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        86 ~~~~~~----------~~~~~~~~~~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      .+.+.-          +..............- -+.-.....+|.|+++++.++++++.+|   ++++   |++.+|...
T Consensus       104 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p---~lLlLDEPt~gLD~~~  180 (287)
T PRK13641        104 LKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP---EILCLDEPAAGLDPEG  180 (287)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC---CEEEEECCCCCCCHHH
Confidence            221100          0000000000011110 0111112479999999999999999888   3655   999999887


Q ss_pred             cchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          152 DHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       152 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .  ..+.+.++...         +|++..+...|++.+++.++.+.
T Consensus       181 ~--~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~  224 (287)
T PRK13641        181 R--KEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI  224 (287)
T ss_pred             H--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            7  77777776542         79999999999999999888754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.35  E-value=1.6e-12  Score=112.26  Aligned_cols=160  Identities=19%  Similarity=0.140  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHHH--
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEFV--   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~~--   89 (228)
                      -+++.+++|+|+||||||||+++|.|...+.+|    .+......... .  . .......+.+.|.+.......+.+  
T Consensus        34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  109 (510)
T PRK15439         34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG----TLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF  109 (510)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhc
Confidence            356679999999999999999999998765444    22221111000 0  0 001122444545443322221111  


Q ss_pred             --------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           90 --------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        90 --------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                              .+.+...+...  +...  +.-.....+|+|+++++.++++++.+|.   ++|   |++.+|....  .++.
T Consensus       110 ~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~aL~~~p~---lllLDEPt~~LD~~~~--~~l~  180 (510)
T PRK15439        110 GLPKRQASMQKMKQLLAAL--GCQL--DLDSSAGSLEVADRQIVEILRGLMRDSR---ILILDEPTASLTPAET--ERLF  180 (510)
T ss_pred             ccccchHHHHHHHHHHHHc--CCCc--cccCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECCCCCCCHHHH--HHHH
Confidence                    01111122111  1111  1111125799999999999999998884   665   9999999877  7887


Q ss_pred             HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+++..         +|++..+...|+..+++.++.+.
T Consensus       181 ~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~  219 (510)
T PRK15439        181 SRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA  219 (510)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            7776542         79999999999999999888754

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.35  E-value=1.1e-11  Score=95.37  Aligned_cols=115  Identities=20%  Similarity=0.314  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccc----c----------CCCCCcceeeEeEeeee---------eCCcEEEEEeC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKA----S----------AGSSGVTKTCEMKTTVL---------KDGQVVNVIDT   76 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~----~----------~~~~~~t~~~~~~~~~~---------~~~~~~~~iDt   76 (228)
                      ++|+++|+.++|||||+.+|+...-...    +          ...+..|..........         .....+.++||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            4799999999999999999975421000    0          00112332222111111         11456899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (228)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~  150 (228)
                      ||..+..       .+...+    ...+|++++|+|+..+.+..+...++.+...   .  .|+++++||+|..
T Consensus        81 PG~~~f~-------~~~~~~----l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFS-------SEVTAA----LRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL  138 (222)
T ss_pred             CCccccH-------HHHHHH----HHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence            9966431       233333    3466999999999988888776666655432   2  2789999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.35  E-value=2.1e-12  Score=100.14  Aligned_cols=159  Identities=14%  Similarity=0.125  Sum_probs=95.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCC-----cccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRK-----AFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAG   85 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~-----~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~   85 (228)
                      -.++..++|+|+||+|||||+++|+|..     .+.+|    .+.........     .........+.+.|.+. ..+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv   97 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG----EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSI   97 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCe----EEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccH
Confidence            3567899999999999999999999987     54333    22221111000     00011122344444443 2221


Q ss_pred             cHHHH---------------HHHHHHHhhccCCccEEEEEEeC--CCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090           86 SEFVG---------------KEIVKCLGMAKDGIHAFLVVFSV--TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT  145 (228)
Q Consensus        86 ~~~~~---------------~~~~~~~~~~~~~~~~il~v~~~--~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~  145 (228)
                      .++..               +.+...+...  +...  .....  ...+|+|+++++.++.+++.+|   ++++   |++
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~~~LSgG~~qrv~la~al~~~p---~llllDEPt~  170 (227)
T cd03260          98 YDNVAYGLRLHGIKLKEELDERVEEALRKA--ALWD--EVKDRLHALGLSGGQQQRLCLARALANEP---EVLLLDEPTS  170 (227)
T ss_pred             HHHHHhHHHhcCCCcHHHHHHHHHHHHHHc--CCCh--HHhccCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCc
Confidence            11110               1111111111  1111  11111  2479999999999999999887   4666   999


Q ss_pred             CCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          146 GGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       146 ~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+|....  ..+.+.+.+..        +|+...+...|+..+++.++.+.
T Consensus       171 ~LD~~~~--~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~  219 (227)
T cd03260         171 ALDPIST--AKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV  219 (227)
T ss_pred             cCCHHHH--HHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence            9999877  77777776543        68888888889988888887653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=1.4e-12  Score=102.08  Aligned_cols=160  Identities=17%  Similarity=0.174  Sum_probs=94.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHHH--
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEFV--   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~~--   89 (228)
                      -.++.+++|+|+||+|||||+++|.|...+.+|    .++........    .........+.+.|.+.......+++  
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~  101 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG----NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMA  101 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhh
Confidence            356789999999999999999999998765444    22222111000    00011122334444433321111111  


Q ss_pred             -------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        90 -------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                   .......+...  +....  .-.....+|.|+++++.+++++..+|   ++++   |++.+|.... 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~-  173 (241)
T PRK10895        102 VLQIRDDLSAEQREDRANELMEEF--HIEHL--RDSMGQSLSGGERRRVEIARALAANP---KFILLDEPFAGVDPISV-  173 (241)
T ss_pred             hhhcccccCHHHHHHHHHHHHHHc--CCHHH--hhcchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH-
Confidence                         00111111111  11110  11112479999999999999998888   4666   9999998876 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       ..+.+.+....         +|....+...|+..+++.++.+.
T Consensus       174 -~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~  216 (241)
T PRK10895        174 -IDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI  216 (241)
T ss_pred             -HHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE
Confidence             66665555432         78999999999998888888764

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.35  E-value=6.2e-12  Score=106.58  Aligned_cols=150  Identities=18%  Similarity=0.200  Sum_probs=91.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCC----------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG----------   85 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~----------   85 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.......          .+...+++....+.          
T Consensus        47 I~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG----eI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~  112 (549)
T PRK13545         47 VPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG----TVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLM  112 (549)
T ss_pred             EeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce----EEEECCEee----------eEEeccccCCCCcHHHHHHhhhhh
Confidence            456789999999999999999999998765444    222211100          00001111111110          


Q ss_pred             ----cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           86 ----SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        86 ----~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                          .....+.....+...  ++..  +.-.....+|+|+++++.++++++.+|.   ++|   |++.+|....  ..+.
T Consensus       113 ~~~~~~e~~e~i~elLe~l--gL~~--~ld~~~~~LSGGQrQRVaLArAL~~~P~---LLLLDEPTsgLD~~sr--~~Ll  183 (549)
T PRK13545        113 MGLTKEKIKEIIPEIIEFA--DIGK--FIYQPVKTYSSGMKSRLGFAISVHINPD---ILVIDEALSVGDQTFT--KKCL  183 (549)
T ss_pred             cCCCHHHHHHHHHHHHHHc--CChh--HhhCCcccCCHHHHHHHHHHHHHHhCCC---EEEEECCcccCCHHHH--HHHH
Confidence                111101111111111  1110  1111124799999999999999998884   555   9999998876  6777


Q ss_pred             HHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          159 DFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       159 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+....         +|++..+...|+..+++.++.+.
T Consensus       184 elL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv  222 (549)
T PRK13545        184 DKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK  222 (549)
T ss_pred             HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            6665432         89999999999999988888754

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=7.1e-12  Score=100.46  Aligned_cols=163  Identities=13%  Similarity=0.059  Sum_probs=97.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCCCCC-CCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPGLFD-LSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG~~~-~~~~~~~~   89 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+..........     .......++.+.|...- ..+..+++
T Consensus        30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l  105 (287)
T PRK13637         30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG----KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDI  105 (287)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc----EEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHH
Confidence            356789999999999999999999998765444    222222111000     00112234445442111 11111111


Q ss_pred             --------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 --------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 --------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                                    .+.+...+...  +...--+.-.....+|+|+++++.++++++.+|.   +++   |++.+|....
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~---llllDEPt~gLD~~~~  180 (287)
T PRK13637        106 AFGPINLGLSEEEIENRVKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK---ILILDEPTAGLDPKGR  180 (287)
T ss_pred             HhHHHHCCCCHHHHHHHHHHHHHHc--CCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECCccCCCHHHH
Confidence                          01111111111  1110001112225799999999999999998884   666   9999999877


Q ss_pred             chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                        .++.+.++.+.          +|++.++...|++++++.++.+..
T Consensus       181 --~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~  225 (287)
T PRK13637        181 --DEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL  225 (287)
T ss_pred             --HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence              77777665431          799999999999999998887643

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.35  E-value=9.4e-12  Score=94.75  Aligned_cols=149  Identities=16%  Similarity=0.139  Sum_probs=90.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc---ccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA---FKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~---~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .++..++|+|+||+|||||++.|+|...   +.+|    .+.........  .........+.+.+.+....+..+..  
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G----~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l--  104 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG----DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETL--  104 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcce----EEEECCEECccchhhhcceEEEEecccccCCCCcHHHHH--
Confidence            4667999999999999999999999865   3333    22222111100  00111223445555544332222221  


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---  165 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---  165 (228)
                         ......    .    .-.....+|.++++++.++++++.+|   ++++   |++.+|....  +.+.+.+.+..   
T Consensus       105 ---~~~~~~----~----~~~~~~~LS~Ge~qrl~laral~~~p---~llllDEPt~~LD~~~~--~~~~~~l~~~~~~~  168 (202)
T cd03233         105 ---DFALRC----K----GNEFVRGISGGERKRVSIAEALVSRA---SVLCWDNSTRGLDSSTA--LEILKCIRTMADVL  168 (202)
T ss_pred             ---hhhhhh----c----cccchhhCCHHHHHHHHHHHHHhhCC---CEEEEcCCCccCCHHHH--HHHHHHHHHHHHhC
Confidence               111000    0    11111479999999999999999888   4555   8899998876  66666555421   


Q ss_pred             --------CchHHHHHHhcCCeEEEeeCCC
Q 027090          166 --------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       166 --------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                              +|...++.+.|+..+++.++.+
T Consensus       169 ~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i  198 (202)
T cd03233         169 KTTTFVSLYQASDEIYDLFDKVLVLYEGRQ  198 (202)
T ss_pred             CCEEEEEEcCCHHHHHHhCCeEEEEECCEE
Confidence                    3445677777887777777654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.35  E-value=5.4e-12  Score=95.32  Aligned_cols=141  Identities=16%  Similarity=0.094  Sum_probs=86.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      .++..++|+|+||+|||||++.|.|...  +..|    .+........ .........+.+.|.+.......++.     
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G----~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l-----  100 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITG----EILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREAL-----  100 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcce----EEEECCEehH-HHhhhceEEecccCccccCCcHHHHH-----
Confidence            4667999999999999999999999642  2222    2222211110 00111223445555554432222221     


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------  165 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------  165 (228)
                      .+....    +          .+|.++++++.++++++.+|   ++++   |++.+|....  ..+.+.+++..      
T Consensus       101 ~~~~~~----~----------~LSgGe~qrv~la~al~~~p---~vlllDEP~~~LD~~~~--~~l~~~l~~~~~~~~ti  161 (192)
T cd03232         101 RFSALL----R----------GLSVEQRKRLTIGVELAAKP---SILFLDEPTSGLDSQAA--YNIVRFLKKLADSGQAI  161 (192)
T ss_pred             HHHHHH----h----------cCCHHHhHHHHHHHHHhcCC---cEEEEeCCCcCCCHHHH--HHHHHHHHHHHHcCCEE
Confidence            111000    0          79999999999999999888   4666   8899998877  77777666532      


Q ss_pred             ---CchHH-HHHHhcCCeEEEee-CC
Q 027090          166 ---PKPLK-EILQLCDNRCVLFD-NK  186 (228)
Q Consensus       166 ---~~~~~-~~~~~~~~~~~~~~-~~  186 (228)
                         +|... .+...|++.+++.+ +.
T Consensus       162 iivtH~~~~~~~~~~d~i~~l~~~g~  187 (192)
T cd03232         162 LCTIHQPSASIFEKFDRLLLLKRGGK  187 (192)
T ss_pred             EEEEcCChHHHHhhCCEEEEEcCCCe
Confidence               56666 35667776666655 44

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=9.1e-13  Score=102.86  Aligned_cols=161  Identities=16%  Similarity=0.136  Sum_probs=95.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEFVG-   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~~~-   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+......... .   ........+.+.+.++...+..++.. 
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  103 (237)
T PRK11614         28 INQGEIVTLIGANGAGKTTLLGTLCGDPRATSG----RIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAM  103 (237)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc----eEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHH
Confidence            356789999999999999999999998765444    22211111000 0   00111223344444333211111110 


Q ss_pred             -----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        91 -----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                                 ..+...+... +....  ........+|.|+++++.++++++.+|   ++++   |++.+|....  ..
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~-~~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p---~illlDEPt~~LD~~~~--~~  175 (237)
T PRK11614        104 GGFFAERDQFQERIKWVYELF-PRLHE--RRIQRAGTMSGGEQQMLAIGRALMSQP---RLLLLDEPSLGLAPIII--QQ  175 (237)
T ss_pred             hhhccChhHHHHHHHHHHHHH-HHHHH--HHhCchhhCCHHHHHHHHHHHHHHhCC---CEEEEcCccccCCHHHH--HH
Confidence                       0011111100 00000  000111479999999999999999888   4665   9999998876  77


Q ss_pred             HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+.+..         +|+..++.+.|++.+++.++.+.
T Consensus       176 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  216 (237)
T PRK11614        176 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV  216 (237)
T ss_pred             HHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence            777665432         78999999999999999888764

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.34  E-value=1.7e-11  Score=92.47  Aligned_cols=162  Identities=22%  Similarity=0.161  Sum_probs=103.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+++++|..|+|||+|...+.+...    ...+..|+...+......++  ..+.++||+|.           +++...
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f----~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~-----------~~~~~~   67 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRF----VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQ-----------EEFSAM   67 (196)
T ss_pred             ceEEEEECCCCCCcchheeeeccccc----ccccCCCccccceEEEEECCEEEEEEEEcCCCc-----------ccChHH
Confidence            46899999999999999999888776    44456666655444333333  34789999992           233333


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ........|++++|++.+++-|..+...+............-|+++|.||+|+...  +.+...-       -..+....
T Consensus        68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~--R~V~~ee-------g~~la~~~  138 (196)
T KOG0395|consen   68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE--RQVSEEE-------GKALARSW  138 (196)
T ss_pred             HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc--cccCHHH-------HHHHHHhc
Confidence            34445567999999999989899887643332222222222489999999999763  3332110       11121111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .      -+-+..||+...++++++..+.+.+..
T Consensus       139 ~------~~f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  139 G------CAFIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             C------CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence            1      012344666678999999888776665

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.34  E-value=2.5e-11  Score=93.57  Aligned_cols=114  Identities=18%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC---cc--------------------------cccCCCCCcceeeEeEeeeeeCCcEE
Q 027090           21 TVVLLGRTGNGKSATGNSILGRK---AF--------------------------KASAGSSGVTKTCEMKTTVLKDGQVV   71 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~---~~--------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~   71 (228)
                      +|+++|+.++|||||+.+|+...   ..                          .........|.+....... .++..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence            58999999999999999985321   00                          0001112334333333332 467789


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (228)
Q Consensus        72 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~s~~~~~~l~~~~~~~~~~~~~~~llv~  144 (228)
                      .++||||..+           +...+......+|++++|+|+...       ........+..+. ..+.   +|+++++
T Consensus        80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv  144 (219)
T cd01883          80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV  144 (219)
T ss_pred             EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence            9999999422           122222233467999999999852       2223333333332 2232   3789999


Q ss_pred             eCCCCC
Q 027090          145 TGGDDL  150 (228)
Q Consensus       145 ~~~D~~  150 (228)
                      ||+|..
T Consensus       145 NK~Dl~  150 (219)
T cd01883         145 NKMDDV  150 (219)
T ss_pred             Eccccc
Confidence            999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.34  E-value=7.3e-12  Score=92.93  Aligned_cols=114  Identities=15%  Similarity=0.077  Sum_probs=79.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      -+++.+++|+|+||+|||||++.|+|...+.+|    .+..          ++..+.++  |                  
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~----------~g~~i~~~--~------------------   67 (177)
T cd03222          22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD----NDEW----------DGITPVYK--P------------------   67 (177)
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCc----EEEE----------CCEEEEEE--c------------------
Confidence            356789999999999999999999998764333    2221          11111111  0                  


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc-----C--
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE-----C--  165 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~-----~--  165 (228)
                                      ... .+|.++++++.++++++.++.   +++   |++.+|....  ..+.+.+.+.     .  
T Consensus        68 ----------------q~~-~LSgGq~qrv~laral~~~p~---lllLDEPts~LD~~~~--~~l~~~l~~~~~~~~~ti  125 (177)
T cd03222          68 ----------------QYI-DLSGGELQRVAIAAALLRNAT---FYLFDEPSAYLDIEQR--LNAARAIRRLSEEGKKTA  125 (177)
T ss_pred             ----------------ccC-CCCHHHHHHHHHHHHHhcCCC---EEEEECCcccCCHHHH--HHHHHHHHHHHHcCCCEE
Confidence                            000 189999999999999988884   555   8899998766  6665555432     1  


Q ss_pred             ---CchHHHHHHhcCCeEEEeeC
Q 027090          166 ---PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       166 ---~~~~~~~~~~~~~~~~~~~~  185 (228)
                         +|....+...|+..+++.+.
T Consensus       126 iivsH~~~~~~~~~d~i~~l~~~  148 (177)
T cd03222         126 LVVEHDLAVLDYLSDRIHVFEGE  148 (177)
T ss_pred             EEEECCHHHHHHhCCEEEEEcCC
Confidence               78888888888877776544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.34  E-value=4.1e-13  Score=104.33  Aligned_cols=163  Identities=13%  Similarity=0.087  Sum_probs=98.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .+......... .   ........+.+.+.++......+.. .
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l-~   97 (230)
T TIGR03410        23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG----SIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENL-L   97 (230)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----EEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHH-H
Confidence            356789999999999999999999998765444    23322211100 0   0011223455666655432222221 1


Q ss_pred             HHHHHH--------hhccCCccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           92 EIVKCL--------GMAKDGIHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        92 ~~~~~~--------~~~~~~~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                      ......        .......+.+- ..-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~---illlDEPt~~LD~~~~--~~l~~  172 (230)
T TIGR03410        98 TGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK---LLLLDEPTEGIQPSII--KDIGR  172 (230)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEecCCcccCCHHHH--HHHHH
Confidence            000000        00000000000 0011114699999999999999998884   555   9999998877  77777


Q ss_pred             Hhhcc-----C-----CchHHHHHHhcCCeEEEeeCCCc
Q 027090          160 FLGHE-----C-----PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       160 ~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+.     .     +|....+...|++.+++.++.+.
T Consensus       173 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~  211 (230)
T TIGR03410       173 VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV  211 (230)
T ss_pred             HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            66543     1     78999988899999888888754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=5.6e-12  Score=100.33  Aligned_cols=160  Identities=14%  Similarity=0.080  Sum_probs=95.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCCCCCC-CCCcHHH-
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPGLFDL-SAGSEFV-   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG~~~~-~~~~~~~-   89 (228)
                      .++.+++|+|+||+|||||+++|+|...+.+|    .+..........     ........+.+.|..... ....+.. 
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~  100 (271)
T PRK13638         25 SLSPVTGLVGANGCGKSTLFMNLSGLLRPQKG----AVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIA  100 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCCCCcc----EEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHH
Confidence            45679999999999999999999998765444    222221111000     001112334444431111 1111110 


Q ss_pred             -------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        90 -------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                   .+.....+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|.... 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrl~laraL~~~p~---lllLDEPt~~LD~~~~-  172 (271)
T PRK13638        101 FSLRNLGVPEAEITRRVDEALTLV--DAQH--FRHQPIQCLSHGQKKRVAIAGALVLQAR---YLLLDEPTAGLDPAGR-  172 (271)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHc--CCHh--HhcCCchhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence                         00011111110  1110  0111124799999999999999998884   666   9999998877 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                       ..+.+.+.+..         +|++..+...|+..+++.++.+..
T Consensus       173 -~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~  216 (271)
T PRK13638        173 -TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT  216 (271)
T ss_pred             -HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence             77777766542         799999989999999998887643

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.34  E-value=3.2e-12  Score=94.76  Aligned_cols=131  Identities=17%  Similarity=0.137  Sum_probs=80.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      -.++..++|+|+||+|||||+++|+|...+..|    .+.........   .........+.+.|.+...     ...+.
T Consensus        25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~-----t~~e~   95 (171)
T cd03228          25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG----EILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG-----TIREN   95 (171)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC----EEEECCEEhhhcCHHHHHhhEEEEcCCchhccc-----hHHHH
Confidence            346679999999999999999999998764433    22221111000   0001112233333332211     00000


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC----  165 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~----  165 (228)
                      +                       +|.++++++.++++++.+|.   +++   |++.+|....  ..+.+.+.+..    
T Consensus        96 l-----------------------LS~G~~~rl~la~al~~~p~---llllDEP~~gLD~~~~--~~l~~~l~~~~~~~t  147 (171)
T cd03228          96 I-----------------------LSGGQRQRIAIARALLRDPP---ILILDEATSALDPETE--ALILEALRALAKGKT  147 (171)
T ss_pred             h-----------------------hCHHHHHHHHHHHHHhcCCC---EEEEECCCcCCCHHHH--HHHHHHHHHhcCCCE
Confidence            0                       89999999999999988884   555   9999998877  77777776532    


Q ss_pred             ----CchHHHHHHhcCCeEEEee
Q 027090          166 ----PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       166 ----~~~~~~~~~~~~~~~~~~~  184 (228)
                          +|+...+.. |+..+.+.+
T Consensus       148 ii~~sh~~~~~~~-~d~~~~l~~  169 (171)
T cd03228         148 VIVIAHRLSTIRD-ADRIIVLDD  169 (171)
T ss_pred             EEEEecCHHHHHh-CCEEEEEcC
Confidence                566666654 665555544

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.34  E-value=5.4e-11  Score=106.00  Aligned_cols=120  Identities=21%  Similarity=0.237  Sum_probs=78.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc---ccCC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK---ASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~---~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   79 (228)
                      ..+-++|+|+|+.++|||||+++|+...-..   ....             ....|.+...... .+++..+.++||||.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~-~~~~~~i~liDTPG~   85 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTV-FWKGHRINIIDTPGH   85 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEE-EECCeEEEEEECCCC
Confidence            3445799999999999999999996422100   0011             1234444433333 356778999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .+..       .+....    ...+|++++|+|+..+....+...+..+...   .  .|+++++||+|....
T Consensus        86 ~~~~-------~~~~~~----l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~--~p~ivviNK~D~~~~  142 (689)
T TIGR00484        86 VDFT-------VEVERS----LRVLDGAVAVLDAVGGVQPQSETVWRQANRY---E--VPRIAFVNKMDKTGA  142 (689)
T ss_pred             cchh-------HHHHHH----HHHhCEEEEEEeCCCCCChhHHHHHHHHHHc---C--CCEEEEEECCCCCCC
Confidence            6532       222333    3355999999999877777766666554432   2  278899999998754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=4.8e-11  Score=99.72  Aligned_cols=162  Identities=17%  Similarity=0.180  Sum_probs=112.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ..|.++|+--.|||||+..|=+.++...  ..+.+|.....+.....  ....+.++||||            ++-+..|
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPG------------HeAFt~m   71 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPG------------HEAFTAM   71 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCc------------HHHHHHH
Confidence            4899999999999999999987776322  34567777777776644  346799999999            4444333


Q ss_pred             -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 -GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 -~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                       ..-..-.|++++++++++++-..+..-+..+++.   ..  |+++..||+|.....+..+...+.+   +  .-..+..
T Consensus        72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a---~v--P~iVAiNKiDk~~~np~~v~~el~~---~--gl~~E~~  141 (509)
T COG0532          72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAA---GV--PIVVAINKIDKPEANPDKVKQELQE---Y--GLVPEEW  141 (509)
T ss_pred             HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC---CC--CEEEEEecccCCCCCHHHHHHHHHH---c--CCCHhhc
Confidence             3445567999999999989988888888887765   33  7999999999986533334333333   1  0011111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ++.    -..++.||.++.++++|++.+.-...
T Consensus       142 gg~----v~~VpvSA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         142 GGD----VIFVPVSAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             CCc----eEEEEeeccCCCCHHHHHHHHHHHHH
Confidence            111    12356799999999999987754433

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.34  E-value=7.9e-12  Score=97.26  Aligned_cols=161  Identities=17%  Similarity=0.121  Sum_probs=98.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH--
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI--   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~--   93 (228)
                      .++.+++|+|+||+|||||+++|+|...+..|    .++........ .........+.+.|.++......++.....  
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G----~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~   99 (232)
T cd03300          24 KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG----EILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL   99 (232)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHh
Confidence            46789999999999999999999999775444    22222211100 001122234455566554322222211000  


Q ss_pred             --------HHHHhhccC--CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090           94 --------VKCLGMAKD--GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        94 --------~~~~~~~~~--~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~  160 (228)
                              ...+.....  +.+..  .-.....+|.++++++.++++++.+|.   +++   |++.+|....  ..+.+.
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~lS~G~~qrl~laral~~~p~---llllDEP~~gLD~~~~--~~l~~~  172 (232)
T cd03300         100 KKLPKAEIKERVAEALDLVQLEGY--ANRKPSQLSGGQQQRVAIARALVNEPK---VLLLDEPLGALDLKLR--KDMQLE  172 (232)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchh--hcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHH
Confidence                    000000000  11111  111114799999999999999999884   555   9999998877  777766


Q ss_pred             hhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          161 LGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       161 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+..          +|...++.+.|++.+++.++.+.
T Consensus       173 l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~  210 (232)
T cd03300         173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ  210 (232)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence            65431          68888888899999888888754

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.34  E-value=4.6e-12  Score=99.15  Aligned_cols=167  Identities=13%  Similarity=0.109  Sum_probs=107.9

Q ss_pred             ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee------eeeCCcEEEEEeCCCCCCCCC
Q 027090           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT------VLKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~~~~iDtpG~~~~~~   84 (228)
                      +.+-.-+++.+++|+|.+|+|||||++++.+...|.+|    .+..+......      .......-.+++-+++....+
T Consensus        24 ~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG----~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT   99 (339)
T COG1135          24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG----SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT   99 (339)
T ss_pred             cceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc----eEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence            34445567889999999999999999999999886665    33322211110      001122345666666665443


Q ss_pred             CcHH--------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090           85 GSEF--------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG  147 (228)
Q Consensus        85 ~~~~--------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~  147 (228)
                      ..++              ..+.....+...  +..  =..-.....+|+|++|++.+++++..+|.   +++   +.+.+
T Consensus       100 V~~NvA~PLeiag~~k~ei~~RV~elLelV--gL~--dk~~~yP~qLSGGQKQRVaIARALa~~P~---iLL~DEaTSAL  172 (339)
T COG1135         100 VFENVAFPLELAGVPKAEIKQRVAELLELV--GLS--DKADRYPAQLSGGQKQRVAIARALANNPK---ILLCDEATSAL  172 (339)
T ss_pred             HHhhhhhhHhhcCCCHHHHHHHHHHHHHHc--CCh--hhhccCchhcCcchhhHHHHHHHHhcCCC---EEEecCccccC
Confidence            3322              111222222111  000  00011114699999999999999988884   666   78999


Q ss_pred             CCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          148 DDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       148 D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      |+...  +.+.+.+++..          +|.++-+-+.|++..++..|.+...
T Consensus       173 DP~TT--~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~  223 (339)
T COG1135         173 DPETT--QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE  223 (339)
T ss_pred             ChHHH--HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence            99877  77777776643          8999999999999999999986543

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.33  E-value=5.8e-12  Score=99.21  Aligned_cols=160  Identities=14%  Similarity=0.135  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----------------eeeCCcEEEEEeCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----------------VLKDGQVVNVIDTPGL   79 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----------------~~~~~~~~~~iDtpG~   79 (228)
                      -.++.+++|+|+||+|||||++.|+|...+.+|    .+.........                .........+.+.+.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~   98 (252)
T TIGR03005        23 VAAGEKVALIGPSGSGKSTILRILMTLEPIDEG----QIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNL   98 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccccccccccccchhHHHHHhhCeEEEecCccc
Confidence            356779999999999999999999998765444    22222111100                0011223455566665


Q ss_pred             CCCCCCcHHHH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--
Q 027090           80 FDLSAGSEFVG---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--  142 (228)
Q Consensus        80 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--  142 (228)
                      ....+..+++.               ..+...+...  +.+.  +.-.....+|.++++++.++++++.+|.   +++  
T Consensus        99 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllD  171 (252)
T TIGR03005        99 FPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV--GLAD--KADHMPAQLSGGQQQRVAIARALAMRPK---VMLFD  171 (252)
T ss_pred             CCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChh--HhhcChhhcCHHHHHHHHHHHHHHcCCC---EEEEe
Confidence            54322222211               0011111111  1111  1111225799999999999999998884   555  


Q ss_pred             -EEeCCCCCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          143 -VFTGGDDLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       143 -v~~~~D~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       |++.+|....  ..+.+.+.+.    .      +|+...+...|++.+++.++.+.
T Consensus       172 EP~~~LD~~~~--~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~  226 (252)
T TIGR03005       172 EVTSALDPELV--GEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV  226 (252)
T ss_pred             CCcccCCHHHH--HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence             9999998876  6776666542    1      78999988899999998888764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK00007 elongation factor G; Reviewed

Probab=99.33  E-value=4.5e-11  Score=106.48  Aligned_cols=120  Identities=21%  Similarity=0.260  Sum_probs=80.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHh---CCCcccccC-------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   79 (228)
                      ...-++|+|+|+.++|||||+++|+   |.......+             .....|.+...... .+.+..+.++||||.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~-~~~~~~~~liDTPG~   85 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTC-FWKDHRINIIDTPGH   85 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEE-EECCeEEEEEeCCCc
Confidence            3445799999999999999999996   332110001             12334444433333 356778999999995


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .+.       ..+...    +...+|++++|+|+..+....+...+..+... +    .|.++++||+|....
T Consensus        86 ~~f-------~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~  142 (693)
T PRK00007         86 VDF-------TIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHH-------HHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence            431       123333    33456999999999888888887777766543 2    268899999998754

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.33  E-value=1.1e-11  Score=96.74  Aligned_cols=160  Identities=15%  Similarity=0.101  Sum_probs=94.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-eeCCcEEEEEeCCCCCCCCCCcHHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-LKDGQVVNVIDTPGLFDLSAGSEFVG---   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-~~~~~~~~~iDtpG~~~~~~~~~~~~---   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+......... . ........+.+.|.+.......+...   
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G----~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~   99 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG----QISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHA   99 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHH
Confidence            346789999999999999999999998765544    22221111000 0 00011234444454432222222110   


Q ss_pred             -----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        91 -----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                                 +.....+...  +...  ..-.....+|.|+++++.++++++.+|.   +++   |++.+|....  ..
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEP~~~LD~~~~--~~  170 (236)
T TIGR03864       100 ALHGLSRAEARERIAALLARL--GLAE--RADDKVRELNGGHRRRVEIARALLHRPA---LLLLDEPTVGLDPASR--AA  170 (236)
T ss_pred             HhcCCCHHHHHHHHHHHHHHc--CChh--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCccCCCHHHH--HH
Confidence                       0001111100  1110  0111114799999999999999998884   666   9999999877  77


Q ss_pred             HHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          157 LEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       157 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +.+.+.+..          +|....+. .|+..+++.++.+..
T Consensus       171 l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~i~~l~~G~i~~  212 (236)
T TIGR03864       171 IVAHVRALCRDQGLSVLWATHLVDEIE-ADDRLVVLHRGRVLA  212 (236)
T ss_pred             HHHHHHHHHHhCCCEEEEEecChhhHh-hCCEEEEEeCCeEEE
Confidence            777665431          68888875 488888888887643

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.33  E-value=4.2e-12  Score=97.44  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=88.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcc-eeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      -+++..++|+|+||+|||||++.|+|...+.+|    .+. ...          ..+.+-..+.+.......+.. ....
T Consensus        10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG----~i~~~~~----------~~~~~~~~~~l~~~ltv~enl-~~~~   74 (213)
T PRK15177         10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG----DFIGLRG----------DALPLGANSFILPGLTGEENA-RMMA   74 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC----CEEEecC----------ceeccccccccCCcCcHHHHH-HHHH
Confidence            345679999999999999999999998765444    222 111          011111123332222111111 1111


Q ss_pred             HHHhhc----------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090           95 KCLGMA----------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        95 ~~~~~~----------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~  161 (228)
                      ......          ..+.+.  ..-.....+|.++++++.++++++.+|   ++++   |++.+|....  ..+...+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~lS~G~~qrv~la~al~~~p---~llllDEP~~~lD~~~~--~~~~~~l  147 (213)
T PRK15177         75 SLYGLDGDEFSHFCYQLTQLEQ--CYTDRVSEYSVTMKTHLAFAINLLLPC---RLYIADGKLYTGDNATQ--LRMQAAL  147 (213)
T ss_pred             HHcCCCHHHHHHHHHHHhChhH--HhhchHhhcCHHHHHHHHHHHHHhcCC---CEEEECCCCccCCHHHH--HHHHHHH
Confidence            100000          000000  000111479999999999999999888   4655   7888887665  5555544


Q ss_pred             hc-c--C-----CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          162 GH-E--C-----PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       162 ~~-~--~-----~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .. .  .     +|.+..+.+.|+..+++.++.+..
T Consensus       148 ~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~  183 (213)
T PRK15177        148 ACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM  183 (213)
T ss_pred             HHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE
Confidence            21 1  1     789999889999999998887653

>smart00053 DYNc Dynamin, GTPase

Probab=99.33  E-value=9.1e-11  Score=90.88  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=52.1

Q ss_pred             cEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhccC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe
Q 027090           69 QVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (228)
Q Consensus        69 ~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~  145 (228)
                      ..+.++||||+......  .....+.+...+..+.. ..+.+++++++...++..+.  ++++..+-  +..+++++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~--l~ia~~ld--~~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA--LKLAKEVD--PQGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH--HHHHHHHH--HcCCcEEEEEE
Confidence            45899999999754211  12232334444444433 34688999998766666553  23333321  12247999999


Q ss_pred             CCCCCccchhhHHHHhhc
Q 027090          146 GGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus       146 ~~D~~~~~~~~~~~~~~~  163 (228)
                      |+|...+. .++.+.++.
T Consensus       201 K~D~~~~~-~~~~~~~~~  217 (240)
T smart00053      201 KLDLMDEG-TDARDILEN  217 (240)
T ss_pred             CCCCCCcc-HHHHHHHhC
Confidence            99988652 334444443

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.33  E-value=2e-11  Score=82.73  Aligned_cols=139  Identities=18%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      ++++++|+.|+|||||+++|-|...    ....++..+        +++  -..+||||.+-.       .+.+..++..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~----lykKTQAve--------~~d--~~~IDTPGEy~~-------~~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDT----LYKKTQAVE--------FND--KGDIDTPGEYFE-------HPRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchh----hhcccceee--------ccC--ccccCCchhhhh-------hhHHHHHHHH
Confidence            6899999999999999999998765    222222211        111  137899995532       2455555666


Q ss_pred             ccCCccEEEEEEeCCC---CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090          100 AKDGIHAFLVVFSVTN---RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~---~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ....+++++++..+..   +++.+-           .....+++|-++||.|+.+.  +.+....+         .+..+
T Consensus        61 t~~dadvi~~v~~and~~s~f~p~f-----------~~~~~k~vIgvVTK~DLaed--~dI~~~~~---------~L~ea  118 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFPPGF-----------LDIGVKKVIGVVTKADLAED--ADISLVKR---------WLREA  118 (148)
T ss_pred             HhhccceeeeeecccCccccCCccc-----------ccccccceEEEEecccccch--HhHHHHHH---------HHHHc
Confidence            6678899999988873   343321           11222368889999999865  55554333         23333


Q ss_pred             CCe-EEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          177 DNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       177 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ... ++..+.      -...++++|++++...
T Consensus       119 Ga~~IF~~s~------~d~~gv~~l~~~L~~~  144 (148)
T COG4917         119 GAEPIFETSA------VDNQGVEELVDYLASL  144 (148)
T ss_pred             CCcceEEEec------cCcccHHHHHHHHHhh
Confidence            322 222222      2347889998887643

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.33  E-value=2.3e-12  Score=111.09  Aligned_cols=160  Identities=19%  Similarity=0.150  Sum_probs=96.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEF---   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~---   88 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+.........    .........+.+.|.+....+..+.   
T Consensus        27 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  102 (501)
T PRK10762         27 VYPGRVMALVGENGAGKSTMMKVLTGIYTRDAG----SILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFL  102 (501)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhh
Confidence            346789999999999999999999998765444    22221111000    0001112233444433222111111   


Q ss_pred             ---------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           89 ---------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        89 ---------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                                     ..+.....+...  +...  ..-.....+|+|+++++.++++++.+|.   ++|   |++.+|..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~~LD~~  175 (501)
T PRK10762        103 GREFVNRFGRIDWKKMYAEADKLLARL--NLRF--SSDKLVGELSIGEQQMVEIAKVLSFESK---VIIMDEPTDALTDT  175 (501)
T ss_pred             ccccccccCccCHHHHHHHHHHHHHHc--CCCC--CccCchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcCCCCHH
Confidence                           001111122111  1111  1111124799999999999999998884   555   99999998


Q ss_pred             ccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          151 EDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..  .++.+.+.+..         +|++..+...|++.+++.++.+.
T Consensus       176 ~~--~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~  220 (501)
T PRK10762        176 ET--ESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI  220 (501)
T ss_pred             HH--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence            77  77776665532         89999999999999999888753

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=5.2e-12  Score=99.67  Aligned_cols=69  Identities=14%  Similarity=0.074  Sum_probs=57.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|.|+++++.++++++.+|   +++|   |++.+|....  ..+.+.+....         +|.+..+.+.|+..+++
T Consensus       137 ~~LS~G~~qrv~laral~~~p---~llllDEP~~~LD~~~~--~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l  211 (255)
T PRK11231        137 TDLSGGQRQRAFLAMVLAQDT---PVVLLDEPTTYLDINHQ--VELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL  211 (255)
T ss_pred             ccCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH--HHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence            579999999999999999888   4666   9999998877  77777665432         78999999999999999


Q ss_pred             eeCCCc
Q 027090          183 FDNKTK  188 (228)
Q Consensus       183 ~~~~~~  188 (228)
                      .++.+.
T Consensus       212 ~~G~i~  217 (255)
T PRK11231        212 ANGHVM  217 (255)
T ss_pred             ECCeEE
Confidence            888764

>cd01882 BMS1 Bms1

Probab=99.33  E-value=2.7e-10  Score=88.09  Aligned_cols=113  Identities=16%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ..++..|+|+|++|+|||||+|+|.+...... ......+     ..........+.++||||..          .....
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-~~~~~g~-----i~i~~~~~~~i~~vDtPg~~----------~~~l~   99 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-ISDIKGP-----ITVVTGKKRRLTFIECPNDI----------NAMID   99 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCc-ccccccc-----EEEEecCCceEEEEeCCchH----------HHHHH
Confidence            45568999999999999999999987632111 1111111     11122356678999999832          22222


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .    ...+|++++++|+.......+...+..+... +.+   .+++++||+|....
T Consensus       100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~p---~vi~VvnK~D~~~~  148 (225)
T cd01882         100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GFP---RVMGVLTHLDLFKK  148 (225)
T ss_pred             H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CCC---eEEEEEeccccCCc
Confidence            2    2456999999999877777777766666543 222   24559999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.32  E-value=3.3e-12  Score=103.29  Aligned_cols=165  Identities=16%  Similarity=0.117  Sum_probs=99.6

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcE-EEEEeCCCCCCCCCCcHH---
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFDLSAGSEF---   88 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~iDtpG~~~~~~~~~~---   88 (228)
                      +..-.++..+.++||+||||||++++|.|-..+.+|    .+..............++ -.+++..-++.+.+..++   
T Consensus        25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G----~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVaf  100 (352)
T COG3842          25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG----EILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAF  100 (352)
T ss_pred             eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhh
Confidence            344566789999999999999999999999886555    333332222111122222 223333222222222221   


Q ss_pred             ------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           89 ------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        89 ------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                  ..+....++...    ..-=+--.....+|+++++++.+++++...|.   ++|   |+..+|..-+ 
T Consensus       101 GLk~~~~~~~~~i~~rv~e~L~lV----~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~---vLLLDEPlSaLD~kLR-  172 (352)
T COG3842         101 GLKVRKKLKKAEIKARVEEALELV----GLEGFADRKPHQLSGGQQQRVALARALVPEPK---VLLLDEPLSALDAKLR-  172 (352)
T ss_pred             hhhhcCCCCHHHHHHHHHHHHHHc----CchhhhhhChhhhChHHHHHHHHHHHhhcCcc---hhhhcCcccchhHHHH-
Confidence                        112222222211    10012222225799999999999999987773   555   8999997544 


Q ss_pred             hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                       .++...+++..          +|+..+.+..++++.++.+|++...
T Consensus       173 -~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~  218 (352)
T COG3842         173 -EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV  218 (352)
T ss_pred             -HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeec
Confidence             44444443322          8999999999999999999987543

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=7.4e-12  Score=98.68  Aligned_cols=169  Identities=13%  Similarity=0.041  Sum_probs=99.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.. ....+.++.......   .  .........+.+.|.+....+..++.
T Consensus        27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl  106 (253)
T PRK14267         27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNV  106 (253)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHH
Confidence            45678999999999999999999999865320 011223332221110   0  00112234455666655433222222


Q ss_pred             HHH------------HHHHHhhccCCccE--EE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           90 GKE------------IVKCLGMAKDGIHA--FL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        90 ~~~------------~~~~~~~~~~~~~~--il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      ...            ....+.......+.  .+  ..-.....+|.++++++.++++++.+|   ++++   |++.+|..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEP~~~LD~~  183 (253)
T PRK14267        107 AIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKP---KILLMDEPTANIDPV  183 (253)
T ss_pred             HHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHH
Confidence            100            00000000011110  00  011112579999999999999999888   4666   99999988


Q ss_pred             ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ..  ..+.+.+++..        +|....+...|++++++.++.+..
T Consensus       184 ~~--~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  228 (253)
T PRK14267        184 GT--AKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE  228 (253)
T ss_pred             HH--HHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence            77  77777776543        689999889999998988887643

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.32  E-value=7e-12  Score=97.62  Aligned_cols=159  Identities=13%  Similarity=0.103  Sum_probs=91.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-ee-----e-CCcEEEEEeCCCCCCCCCCcH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VL-----K-DGQVVNVIDTPGLFDLSAGSE   87 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~-----~-~~~~~~~iDtpG~~~~~~~~~   87 (228)
                      .-.++..++|+|+||+|||||+++|+|...+.+|    .++........ ..     . .....++.+.|.++...+..+
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e  106 (233)
T PRK11629         31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG----DVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALE  106 (233)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHH
Confidence            3456779999999999999999999998764444    22222111100 00     0 011234455555443322222


Q ss_pred             HHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           88 FVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        88 ~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      ++.              +.....+...  +....  .-.....+|.|+++++.+++++..+|.   +++   |++.+|..
T Consensus       107 ~l~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~--~~~~~~~LSgG~~qrl~la~al~~~p~---lllLDEPt~~LD~~  179 (233)
T PRK11629        107 NVAMPLLIGKKKPAEINSRALEMLAAV--GLEHR--ANHRPSELSGGERQRVAIARALVNNPR---LVLADEPTGNLDAR  179 (233)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchh--hhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCCHH
Confidence            210              0111111111  11111  111114799999999999999998884   655   99999988


Q ss_pred             ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090          151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      ..  ..+.+.+++..          +|+...+.. ++..+++.++.+
T Consensus       180 ~~--~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i  223 (233)
T PRK11629        180 NA--DSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRL  223 (233)
T ss_pred             HH--HHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEE
Confidence            77  77777666531          678877665 456666666654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.32  E-value=6.8e-12  Score=99.88  Aligned_cols=68  Identities=16%  Similarity=0.249  Sum_probs=54.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++++++.+|   ++++   |++.+|....  ..+.+.+.+..         +|+...+...|+..++.
T Consensus       141 ~~LSgG~~qrv~laraL~~~p---~llllDEPt~~LD~~~~--~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~  215 (272)
T PRK15056        141 GELSGGQKKRVFLARAIAQQG---QVILLDEPFTGVDVKTE--ARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV  215 (272)
T ss_pred             ccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCccCCHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            479999999999999999888   4666   9999998877  77777776542         78999998889876554


Q ss_pred             eeCCCc
Q 027090          183 FDNKTK  188 (228)
Q Consensus       183 ~~~~~~  188 (228)
                       ++.+.
T Consensus       216 -~G~i~  220 (272)
T PRK15056        216 -KGTVL  220 (272)
T ss_pred             -CCEEE
Confidence             66654

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.32  E-value=1.1e-11  Score=100.64  Aligned_cols=161  Identities=15%  Similarity=0.100  Sum_probs=97.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-------------------eeeCCcEEEEEeC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-------------------VLKDGQVVNVIDT   76 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~~~~iDt   76 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .++........                   .........+.+.
T Consensus        49 i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G----~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~  124 (320)
T PRK13631         49 FEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG----TIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF  124 (320)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----eEEECCEEcccccccccccccccccccchHHHHHhcEEEEEEC
Confidence            356789999999999999999999999775544    22222111000                   0011122345555


Q ss_pred             CC--CCCCCCCcHHH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccE
Q 027090           77 PG--LFDLSAGSEFV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM  140 (228)
Q Consensus        77 pG--~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~  140 (228)
                      |.  +... +..+++              .+.....+...  +... -+.-.....+|+|+++++.++++++.+|.   +
T Consensus       125 ~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~-~~~~~~~~~LSgGqkqRvaiAraL~~~p~---i  197 (320)
T PRK13631        125 PEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKM--GLDD-SYLERSPFGLSGGQKRRVAIAGILAIQPE---I  197 (320)
T ss_pred             chhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHc--CCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCC---E
Confidence            52  2221 111111              01111111111  1110 01111224799999999999999998884   6


Q ss_pred             EE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          141 IV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       141 ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +|   |++.+|....  ..+.+.+....         +|++..+.+.|++++++.++.+..
T Consensus       198 LLLDEPtsgLD~~~~--~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~  256 (320)
T PRK13631        198 LIFDEPTAGLDPKGE--HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK  256 (320)
T ss_pred             EEEECCccCCCHHHH--HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            66   8999998877  77777665431         799999999999999998887653

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.32  E-value=7e-12  Score=97.86  Aligned_cols=165  Identities=17%  Similarity=0.133  Sum_probs=98.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-   93 (228)
                      -.++.+++|+|+||+|||||++.|+|...+..|    .++........ .........+.+.|.++...+..++..... 
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~   98 (237)
T TIGR00968        23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG----RIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLE   98 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHH
Confidence            346779999999999999999999998664433    22222111100 001122345555666554322222211000 


Q ss_pred             ---------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090           94 ---------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        94 ---------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~  161 (228)
                               .............--+.-.....+|.++++++.+++++..+|.   +++   |++.+|....  ..+.+.+
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~---llllDEP~~~LD~~~~--~~~~~~l  173 (237)
T TIGR00968        99 IRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ---VLLLDEPFGALDAKVR--KELRSWL  173 (237)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHHH
Confidence                     0000000001111000111114799999999999999998883   555   9999998877  7777777


Q ss_pred             hcc-----C-----CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          162 GHE-----C-----PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       162 ~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.     .     +|...++...|++.+++.++.+..
T Consensus       174 ~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~  211 (237)
T TIGR00968       174 RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ  211 (237)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence            653     1     788888889999999988887653

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.32  E-value=5e-12  Score=100.30  Aligned_cols=161  Identities=13%  Similarity=0.038  Sum_probs=95.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV---   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~---   89 (228)
                      -.++.+++|+|+||+|||||+++|+|...+..|    .+.........   ........++.+.|.+.......+..   
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~  105 (265)
T PRK10253         30 IPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG----HVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARG  105 (265)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc----EEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhC
Confidence            346779999999999999999999998764444    22221111000   00001122334444332211111100   


Q ss_pred             ---------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           90 ---------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        90 ---------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                                     .......+...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Gq~qrv~laral~~~p~---llllDEPt~gLD~~~  178 (265)
T PRK10253        106 RYPHQPLFTRWRKEDEEAVTKAMQAT--GITH--LADQSVDTLSGGQRQRAWIAMVLAQETA---IMLLDEPTTWLDISH  178 (265)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHc--CCHH--HhcCCcccCChHHHHHHHHHHHHhcCCC---EEEEeCccccCCHHH
Confidence                           01111111111  1111  1111225799999999999999998884   555   999999887


Q ss_pred             cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.+.+..          +|++..+...|++.+++.++.+..
T Consensus       179 ~--~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~  224 (265)
T PRK10253        179 Q--IDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA  224 (265)
T ss_pred             H--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            6  77766665431          789999999999999998887643

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.32  E-value=9.9e-12  Score=97.35  Aligned_cols=145  Identities=12%  Similarity=-0.002  Sum_probs=87.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH---
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI---   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~---   93 (228)
                      .++.+++|+|+||+|||||+++|+|...+.+|    .+.....         ....+.+.+......+..+.+ ...   
T Consensus        23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G----~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l-~~~~~~   88 (246)
T cd03237          23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEG----DIEIELD---------TVSYKPQYIKADYEGTVRDLL-SSITKD   88 (246)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC----eEEECCc---------eEEEecccccCCCCCCHHHHH-HHHhhh
Confidence            46789999999999999999999998765544    2221110         111122222211111111111 000   


Q ss_pred             --------HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090           94 --------VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        94 --------~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~  162 (228)
                              ...+...  +.+.  ..-.....+|+|+++++.++++++.++.   +++   |++.+|....  ..+.+.++
T Consensus        89 ~~~~~~~~~~~l~~l--~l~~--~~~~~~~~LSgGe~qrv~iaraL~~~p~---llllDEPt~~LD~~~~--~~l~~~l~  159 (246)
T cd03237          89 FYTHPYFKTEIAKPL--QIEQ--ILDREVPELSGGELQRVAIAACLSKDAD---IYLLDEPSAYLDVEQR--LMASKVIR  159 (246)
T ss_pred             ccccHHHHHHHHHHc--CCHH--HhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHHHH
Confidence                    0001000  1110  0111124799999999999999998884   555   9999998877  77776665


Q ss_pred             ccC----------CchHHHHHHhcCCeEEEee
Q 027090          163 HEC----------PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       163 ~~~----------~~~~~~~~~~~~~~~~~~~  184 (228)
                      +..          +|++..+...|+..+++..
T Consensus       160 ~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~  191 (246)
T cd03237         160 RFAENNEKTAFVVEHDIIMIDYLADRLIVFEG  191 (246)
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence            531          7888888888998777643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.32  E-value=9.5e-12  Score=100.40  Aligned_cols=69  Identities=16%  Similarity=0.098  Sum_probs=57.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++.+++.+|.   ++|   |++.+|....  ..+.+.+....         +|++..+.+.|++++++
T Consensus       164 ~~LSgGqkqrvalA~aL~~~P~---lLlLDEPt~~LD~~~~--~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl  238 (305)
T PRK13651        164 FELSGGQKRRVALAGILAMEPD---FLVFDEPTAGLDPQGV--KEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF  238 (305)
T ss_pred             hhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCCCCCHHHH--HHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence            5799999999999999998884   555   9999998877  77777665432         79999999999999999


Q ss_pred             eeCCCc
Q 027090          183 FDNKTK  188 (228)
Q Consensus       183 ~~~~~~  188 (228)
                      .++.+.
T Consensus       239 ~~G~i~  244 (305)
T PRK13651        239 KDGKII  244 (305)
T ss_pred             ECCEEE
Confidence            888754

>PRK12739 elongation factor G; Reviewed

Probab=99.32  E-value=5e-11  Score=106.22  Aligned_cols=119  Identities=24%  Similarity=0.311  Sum_probs=79.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcc--ccc-C-------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KAS-A-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~--~~~-~-------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~   80 (228)
                      ..-++|+|+|+.++|||||+++|+...-.  ..+ +             .....|.+....... +++..+.++||||..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~   84 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHV   84 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHH
Confidence            34578999999999999999999642110  000 0             123445444444333 567789999999954


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      +       ...+...    +...+|++++|+|+..+....+...+..+... +    +|.++++||+|....
T Consensus        85 ~-------f~~e~~~----al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~  140 (691)
T PRK12739         85 D-------FTIEVER----SLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA  140 (691)
T ss_pred             H-------HHHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence            3       1123333    33456999999999878877777766665432 2    268899999998754

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.32  E-value=4.1e-12  Score=96.62  Aligned_cols=145  Identities=16%  Similarity=0.114  Sum_probs=92.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCC--cccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~--~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .-.++..++|+|+||+|||||++.|.|..  .+..|    .+......... .   ........+.+.|.+......   
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~---   94 (200)
T cd03217          22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG----EILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKN---   94 (200)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCcc----EEEECCEECCcCCHHHHhhCcEEEeecChhhccCccH---
Confidence            33567799999999999999999999983  33333    22222211100 0   001112344555544322111   


Q ss_pred             HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC
Q 027090           89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC  165 (228)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~  165 (228)
                        .+..                -.....+|.++++++.++++++.+|   ++++   |++.+|....  ..+.+.+.+..
T Consensus        95 --~~~l----------------~~~~~~LS~G~~qrv~laral~~~p---~illlDEPt~~LD~~~~--~~l~~~L~~~~  151 (200)
T cd03217          95 --ADFL----------------RYVNEGFSGGEKKRNEILQLLLLEP---DLAILDEPDSGLDIDAL--RLVAEVINKLR  151 (200)
T ss_pred             --HHHH----------------hhccccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCccCCHHHH--HHHHHHHHHHH
Confidence              1111                0111379999999999999999888   4666   8999998876  77777665432


Q ss_pred             ---------CchHHHHHH-hcCCeEEEeeCCCcc
Q 027090          166 ---------PKPLKEILQ-LCDNRCVLFDNKTKD  189 (228)
Q Consensus       166 ---------~~~~~~~~~-~~~~~~~~~~~~~~~  189 (228)
                               +|....+.. .|+..+++.++.+..
T Consensus       152 ~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~  185 (200)
T cd03217         152 EEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK  185 (200)
T ss_pred             HCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE
Confidence                     688887766 689888888887543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.31  E-value=1.3e-11  Score=97.44  Aligned_cols=161  Identities=16%  Similarity=0.067  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--eeCCcEEEEEeCCCCCCCCCCcHHHH--
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--LKDGQVVNVIDTPGLFDLSAGSEFVG--   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~~~~~~~~~iDtpG~~~~~~~~~~~~--   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+..|    .+......... .  ........+.+.|.+.......+.+.  
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~   99 (256)
T TIGR03873        24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG----TVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALG   99 (256)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC----EEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhc
Confidence            356789999999999999999999998764444    22222111100 0  00111223344443222111111110  


Q ss_pred             ----------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           91 ----------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        91 ----------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                                      +.+...+...  +...  +.-.....+|.++++++.+++++..+|.   +++   |++.+|...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEPt~~LD~~~  172 (256)
T TIGR03873       100 RIPHRSLWAGDSPHDAAVVDRALART--ELSH--LADRDMSTLSGGERQRVHVARALAQEPK---LLLLDEPTNHLDVRA  172 (256)
T ss_pred             chhhhhhccCCCHHHHHHHHHHHHHc--CcHh--hhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCccccCCHHH
Confidence                            0111111111  1110  1111124799999999999999998884   555   999999887


Q ss_pred             cchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.+.+..         +|.+..+.+.|+..+++.++.+..
T Consensus       173 ~--~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (256)
T TIGR03873       173 Q--LETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA  217 (256)
T ss_pred             H--HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence            6  77777666542         789999999999999998887653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.31  E-value=1.2e-12  Score=98.89  Aligned_cols=165  Identities=17%  Similarity=0.176  Sum_probs=103.8

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSE   87 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~   87 (228)
                      ..-+++...+|+|++|+|||||+++|.|...|..|.    +-.........      ....+--.+++--.+++.....+
T Consensus        29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge----I~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~e  104 (263)
T COG1127          29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE----ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFE  104 (263)
T ss_pred             eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe----EEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhH
Confidence            344667899999999999999999999998866652    11111110000      00111123344333333332222


Q ss_pred             H--------------HHHHHHHHHhhccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           88 F--------------VGKEIVKCLGMAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        88 ~--------------~~~~~~~~~~~~~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      +              ..+++.. ++...-+.... ...+.  ..+|+|++++..+++++.-+|.   +++   |++.+|+
T Consensus       105 NVafplre~~~lp~~~i~~lv~-~KL~~VGL~~~~~~~~P--sELSGGM~KRvaLARAialdPe---ll~~DEPtsGLDP  178 (263)
T COG1127         105 NVAFPLREHTKLPESLIRELVL-MKLELVGLRGAAADLYP--SELSGGMRKRVALARAIALDPE---LLFLDEPTSGLDP  178 (263)
T ss_pred             hhheehHhhccCCHHHHHHHHH-HHHHhcCCChhhhhhCc--hhhcchHHHHHHHHHHHhcCCC---EEEecCCCCCCCc
Confidence            2              2222211 11111111111 11222  4799999999999999988884   666   9999999


Q ss_pred             CccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          150 LEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ...  ..+.+.+..+.          +|++..+...|++.+++.++++...
T Consensus       179 I~a--~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~  227 (263)
T COG1127         179 ISA--GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE  227 (263)
T ss_pred             chH--HHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence            987  77777777655          8999999999999999999987654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.31  E-value=6.8e-12  Score=99.38  Aligned_cols=162  Identities=16%  Similarity=0.128  Sum_probs=96.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--------eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--------VLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--------~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .++.+++|+|+||+|||||+++|+|...+..+ ..+.+.........        .........+.+.+.++...+..+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~  106 (262)
T PRK09984         28 HHGEMVALLGPSGSGKSTLLRHLSGLITGDKS-AGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLEN  106 (262)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCCCCCC-CceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHH
Confidence            46789999999999999999999998653221 01122221111100        0001112344555554432221111


Q ss_pred             HH----------------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090           89 VG----------------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---V  143 (228)
Q Consensus        89 ~~----------------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v  143 (228)
                      +.                      .....++...  +...  +.-.....+|.++++++.++++++.+|.   ++|   |
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEP  179 (262)
T PRK09984        107 VLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVH--FAHQRVSTLSGGQQQRVAIARALMQQAK---VILADEP  179 (262)
T ss_pred             HHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHH--HHhCCccccCHHHHHHHHHHHHHhcCCC---EEEecCc
Confidence            10                      0111111111  1110  1111125799999999999999998884   666   9


Q ss_pred             EeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          144 FTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       144 ~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ++.+|....  ..+.+.+++..          +|+...+...|++++++.++.+.
T Consensus       180 t~~LD~~~~--~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~  232 (262)
T PRK09984        180 IASLDPESA--RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF  232 (262)
T ss_pred             cccCCHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999999877  77777776542          68999999999999988888764

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.31  E-value=1.5e-11  Score=95.06  Aligned_cols=156  Identities=16%  Similarity=0.128  Sum_probs=93.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC-C-CC----------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD-L-SA----------   84 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~-~-~~----------   84 (228)
                      +++.+++|+|+||+|||||+++|+|...+.+|    .+.......  ........++.+.|.+.. . ..          
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~--~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~   77 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKG----TVKVAGASP--GKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT   77 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCccc--hHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence            45789999999999999999999998764444    222221110  000111223334333210 0 00          


Q ss_pred             --------CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           85 --------GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        85 --------~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                              ......+.+...+...  +...  +.-.....+|.++++++.++++++.+|.   +++   |++.+|.... 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llilDEP~~~LD~~~~-  149 (223)
T TIGR03771        78 GHIGWLRRPCVADFAAVRDALRRV--GLTE--LADRPVGELSGGQRQRVLVARALATRPS---VLLLDEPFTGLDMPTQ-  149 (223)
T ss_pred             cccccccCCcHHHHHHHHHHHHHh--CCch--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH-
Confidence                    0000001112222211  1111  1111224799999999999999998884   666   9999999877 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       ..+.+.+.+..         +|+...+...|+..+++ ++.+.
T Consensus       150 -~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~  191 (223)
T TIGR03771       150 -ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI  191 (223)
T ss_pred             -HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence             77777776542         78999998899988776 66654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=1.4e-11  Score=96.88  Aligned_cols=166  Identities=13%  Similarity=0.045  Sum_probs=97.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFVG-   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~~~~-   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.. .+..+.+........   ..........+.+.|.+....+..++.. 
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~  105 (250)
T PRK14247         26 IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVAL  105 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHH
Confidence            34677999999999999999999999864210 011112222111100   0001112234556665443322222211 


Q ss_pred             ---------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           91 ---------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        91 ---------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                                     +.+...+...  +.+..+  ..-.....+|+|+++++.++++++.+|.   +++   |++.+|..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~---lllLDEP~~~LD~~  180 (250)
T PRK14247        106 GLKLNRLVKSKKELQERVRWALEKA--QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPE---VLLADEPTANLDPE  180 (250)
T ss_pred             HHHhccccCCHHHHHHHHHHHHHHc--CCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCCccCCHH
Confidence                           0011111110  111000  0111125799999999999999998874   555   99999998


Q ss_pred             ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..  ..+.+.+.+..        +|....+.+.|+..+++.++.+.
T Consensus       181 ~~--~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  224 (250)
T PRK14247        181 NT--AKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV  224 (250)
T ss_pred             HH--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE
Confidence            77  77777776543        78999888999988888888764

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1e-10  Score=97.65  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=110.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL-G   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~-~   98 (228)
                      ..|-|||+-..|||||+.+|-+..+...+  .+++|.-...+.+...++..+++.||||            ..-+..| .
T Consensus       154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGAF~V~~p~G~~iTFLDTPG------------HaAF~aMRa  219 (683)
T KOG1145|consen  154 PVVTIMGHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGAFTVTLPSGKSITFLDTPG------------HAAFSAMRA  219 (683)
T ss_pred             CeEEEeecccCChhhHHHHHhhCceehhh--cCCccceeceEEEecCCCCEEEEecCCc------------HHHHHHHHh
Confidence            58999999999999999999877763333  3467777777777767888999999999            4434444 3


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      .-+.-.|.+++|+.++++.-..+.+.++.+.+.   ..  |+++.+||+|....   ..+...+++.++.+  ..+...+
T Consensus       220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a---~pekv~~eL~~~gi--~~E~~GG  289 (683)
T KOG1145|consen  220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGA---NPEKVKRELLSQGI--VVEDLGG  289 (683)
T ss_pred             ccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCC---CHHHHHHHHHHcCc--cHHHcCC
Confidence            456678999999999988888887776666553   33  89999999998754   33333332111111  1111111


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      -.    -.++.||.+++|++.|.+.+.-.
T Consensus       290 dV----QvipiSAl~g~nl~~L~eaill~  314 (683)
T KOG1145|consen  290 DV----QVIPISALTGENLDLLEEAILLL  314 (683)
T ss_pred             ce----eEEEeecccCCChHHHHHHHHHH
Confidence            11    12567888999999998876433

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.31  E-value=7.3e-12  Score=98.12  Aligned_cols=162  Identities=15%  Similarity=0.121  Sum_probs=94.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCC--cccccCCCCCcceeeEeEee-e--e-eCCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTKTCEMKTT-V--L-KDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~--~~~~~~~~~~~t~~~~~~~~-~--~-~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .-.++..++|+|+||+|||||+++|+|..  .+.+|    .+......... .  . .......+.+.|.+.......+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~   97 (243)
T TIGR01978        22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSG----TILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEF   97 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc----eEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHH
Confidence            34567899999999999999999999984  33333    22222111100 0  0 00111234455554432221111


Q ss_pred             HH---------------------HHHHHHHhhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090           89 VG---------------------KEIVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIV---V  143 (228)
Q Consensus        89 ~~---------------------~~~~~~~~~~~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~~~~~ll---v  143 (228)
                      ..                     +.+...+...  +...- +.-.... .+|.|+++++.++++++.+|.   +++   |
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEP  171 (243)
T TIGR01978        98 LRSALNARRSARGEEPLDLLDFLKLLKAKLALL--GMDEE-FLNRSVNEGFSGGEKKRNEILQMALLEPK---LAILDEI  171 (243)
T ss_pred             HHHHHHHhhcccccccccHHHHHHHHHHHHHHc--CCchh-hcccccccCcCHHHHHHHHHHHHHhcCCC---EEEecCC
Confidence            10                     0011111110  11100 0111112 499999999999999998884   555   9


Q ss_pred             EeCCCCCccchhhHHHHhhccC---------CchHHHHHHh-cCCeEEEeeCCCc
Q 027090          144 FTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQL-CDNRCVLFDNKTK  188 (228)
Q Consensus       144 ~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~  188 (228)
                      ++.+|....  ..+.+.+.+..         +|+...+... |+..+++.++.+.
T Consensus       172 t~~LD~~~~--~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~  224 (243)
T TIGR01978       172 DSGLDIDAL--KIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV  224 (243)
T ss_pred             cccCCHHHH--HHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE
Confidence            999999877  78877776542         7888888887 7888888877654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.31  E-value=9.8e-12  Score=96.19  Aligned_cols=68  Identities=18%  Similarity=0.151  Sum_probs=53.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|.++++++.++++++.+|.   +++   |++.+|....  ..+.+.+....         +|+..++...|++.+++
T Consensus       141 ~~LSgG~~qrv~laral~~~p~---llllDEP~~gLD~~~~--~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  215 (224)
T cd03220         141 KTYSSGMKARLAFAIATALEPD---ILLIDEVLAVGDAAFQ--EKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL  215 (224)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4799999999999999998884   555   9999998766  66666655432         68888888888888777


Q ss_pred             eeCCC
Q 027090          183 FDNKT  187 (228)
Q Consensus       183 ~~~~~  187 (228)
                      .++.+
T Consensus       216 ~~G~i  220 (224)
T cd03220         216 EKGKI  220 (224)
T ss_pred             ECCEE
Confidence            77654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.31  E-value=1.4e-11  Score=98.98  Aligned_cols=160  Identities=17%  Similarity=0.136  Sum_probs=96.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-------eeeCCcEEEEEeCCC--CCCCCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-------VLKDGQVVNVIDTPG--LFDLSAGS   86 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~~~iDtpG--~~~~~~~~   86 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+.........       ........++.+.|.  +... +..
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv~  104 (290)
T PRK13634         30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG----TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE-TVE  104 (290)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc----EEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhh-hHH
Confidence            356779999999999999999999998765444    23222211100       000112234555542  2221 111


Q ss_pred             HHHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           87 EFVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        87 ~~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      +++.              +.....+...  +.+..+ .-.....+|.++++++.++.+++.+|.   ++|   |++.+|.
T Consensus       105 eni~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~-~~~~~~~LSgGq~qrv~lAraL~~~P~---llllDEPt~~LD~  178 (290)
T PRK13634        105 KDICFGPMNFGVSEEDAKQKAREMIELV--GLPEEL-LARSPFELSGGQMRRVAIAGVLAMEPE---VLVLDEPTAGLDP  178 (290)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHC--CCChhh-hhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCH
Confidence            1110              0011111111  111000 111124799999999999999998884   655   8999998


Q ss_pred             CccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          150 LEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ...  ..+.+.++...          +|++..+.+.|++.+++.++.+.
T Consensus       179 ~~~--~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~  225 (290)
T PRK13634        179 KGR--KEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF  225 (290)
T ss_pred             HHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            876  77766665431          78999999999999998888754

>TIGR00503 prfC peptide chain release factor 3

Probab=99.31  E-value=6.3e-11  Score=101.94  Aligned_cols=119  Identities=15%  Similarity=0.200  Sum_probs=74.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC--Cccccc-CC-----------------CCCcceeeEeEeeeeeCCcEEEEEeC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR--KAFKAS-AG-----------------SSGVTKTCEMKTTVLKDGQVVNVIDT   76 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~--~~~~~~-~~-----------------~~~~t~~~~~~~~~~~~~~~~~~iDt   76 (228)
                      ...++++|+|+.++|||||+++|+-.  .....+ +.                 ....+........ .+++..+.++||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~-~~~~~~inliDT   87 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF-PYRDCLVNLLDT   87 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE-eeCCeEEEEEEC
Confidence            34579999999999999999998521  110011 00                 0122222222222 256778999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ||..+.       ..+...+    ...+|++++|+++..++.......++.+..  . .  .|+++++||+|....
T Consensus        88 PG~~df-------~~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~-~--~PiivviNKiD~~~~  147 (527)
T TIGR00503        88 PGHEDF-------SEDTYRT----LTAVDNCLMVIDAAKGVETRTRKLMEVTRL--R-D--TPIFTFMNKLDRDIR  147 (527)
T ss_pred             CChhhH-------HHHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHh--c-C--CCEEEEEECccccCC
Confidence            996432       1222233    346699999999987666666665554432  1 2  379999999998643

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.31  E-value=7.5e-11  Score=95.26  Aligned_cols=86  Identities=19%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce-eeEeEeeee-----------------------eCCcEEEEEeCC
Q 027090           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVL-----------------------KDGQVVNVIDTP   77 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~-----------------------~~~~~~~~iDtp   77 (228)
                      |+|+|.+++|||||+|+|++...   .+.+++.|+ +........                       .....+.++|||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~---~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a   77 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADV---EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA   77 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCC---cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence            58999999999999999998764   222333333 222111110                       122468999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (228)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (228)
                      |+.............+...    .+.+|++++|+++.
T Consensus        78 Glv~ga~~~~glg~~fL~~----ir~aD~ii~Vvd~~  110 (318)
T cd01899          78 GLVPGAHEGKGLGNKFLDD----LRDADALIHVVDAS  110 (318)
T ss_pred             CCCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence            9865433222222333333    34669999999986

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.31  E-value=1.1e-11  Score=95.98  Aligned_cols=162  Identities=14%  Similarity=0.084  Sum_probs=92.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc---ccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA---FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      -.++.+++|+|+||+|||||++.|+|...   +.+|    .+..................+.+.+.+....+..+++. .
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G----~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~-~  104 (226)
T cd03234          30 VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG----QILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLT-Y  104 (226)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCce----EEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHH-H
Confidence            35678999999999999999999999865   3333    22221111100011122234445555543322222211 0


Q ss_pred             HHHHH--------------hh-ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           93 IVKCL--------------GM-AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        93 ~~~~~--------------~~-~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                      .....              .. ..+..+.--+.-.....+|.++++++.++++++.+|.   +++   |++.+|....  
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~---illlDEP~~gLD~~~~--  179 (226)
T cd03234         105 TAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK---VLILDEPTSGLDSFTA--  179 (226)
T ss_pred             HHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCC---EEEEeCCCcCCCHHHH--
Confidence            00000              00 0000010000111114799999999999999998884   555   8999998876  


Q ss_pred             hhHHHHhhccC---------CchH-HHHHHhcCCeEEEeeCCC
Q 027090          155 KTLEDFLGHEC---------PKPL-KEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       155 ~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~  187 (228)
                      ..+.+.+.+..         +|.. .++.+.|+..+++.++.+
T Consensus       180 ~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i  222 (226)
T cd03234         180 LNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI  222 (226)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEE
Confidence            77777665432         5776 578888888888777654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=1.2e-11  Score=98.23  Aligned_cols=159  Identities=16%  Similarity=0.129  Sum_probs=92.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCc------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGS------   86 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~------   86 (228)
                      +++.+++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.|. +.......      
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~  108 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG----EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG  108 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhh
Confidence            56789999999999999999999998765444    22222111100   000111223444442 11111100      


Q ss_pred             --------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           87 --------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        87 --------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                              ..........+...  +...  +.-.....+|.|+++++.++++++.+|.   ++|   |++.+|....  .
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p~---lllLDEPt~~LD~~~~--~  179 (269)
T PRK13648        109 LENHAVPYDEMHRRVSEALKQV--DMLE--RADYEPNALSGGQKQRVAIAGVLALNPS---VIILDEATSMLDPDAR--Q  179 (269)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHc--CCch--hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--H
Confidence                    11101111111111  1110  1111225799999999999999998884   666   9999998877  7


Q ss_pred             hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.+.+.+..          +|....+.. |++.+++.++.+..
T Consensus       180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~  222 (269)
T PRK13648        180 NLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK  222 (269)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE
Confidence            7777666431          677777764 88888888887643

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=9.3e-12  Score=99.35  Aligned_cols=160  Identities=19%  Similarity=0.166  Sum_probs=95.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC--CCCCCCCcHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG--LFDLSAGSEFV-   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG--~~~~~~~~~~~-   89 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.|.  +... +..+++ 
T Consensus        27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~-tv~~~l~  101 (277)
T PRK13652         27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG----SVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP-TVEQDIA  101 (277)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCcCCHHHHHhheEEEecCcccccccc-cHHHHHH
Confidence            356789999999999999999999998765544    22221111100   000111223333331  1111 111111 


Q ss_pred             -------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        90 -------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                   .+.+...+...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|.... 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~Gq~qrl~laraL~~~p~---llilDEPt~gLD~~~~-  173 (277)
T PRK13652        102 FGPINLGLDEETVAHRVSSALHML--GLEE--LRDRVPHHLSGGEKKRVAIAGVIAMEPQ---VLVLDEPTAGLDPQGV-  173 (277)
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHHC--CChh--HhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence                         00111111110  1110  1111125799999999999999999884   665   8999998877 


Q ss_pred             hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                       ..+.+.+++..          +|.+.++.+.|++.+++.++.+..
T Consensus       174 -~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~  218 (277)
T PRK13652        174 -KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA  218 (277)
T ss_pred             -HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence             77776665421          789999999999999988887643

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.30  E-value=4.1e-12  Score=109.30  Aligned_cols=159  Identities=13%  Similarity=0.091  Sum_probs=95.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCc------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGS------   86 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~------   86 (228)
                      .++.+++|+|+||||||||+++|+|...+.+|    .+.........    .........+.+.|.+....+..      
T Consensus        22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~   97 (491)
T PRK10982         22 RPHSIHALMGENGAGKSTLLKCLFGIYQKDSG----SILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLG   97 (491)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCCCCce----EEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcc
Confidence            56679999999999999999999998765444    22211110000    00001112233333222111110      


Q ss_pred             -----------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           87 -----------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        87 -----------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                                 ....+.....+...  +.+.  ..-.....+|+|+++++.++++++.+|.   ++|   |++.+|....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGq~qrv~lA~al~~~p~---lllLDEPt~~LD~~~~  170 (491)
T PRK10982         98 RYPTKGMFVDQDKMYRDTKAIFDEL--DIDI--DPRAKVATLSVSQMQMIEIAKAFSYNAK---IVIMDEPTSSLTEKEV  170 (491)
T ss_pred             cccccccccCHHHHHHHHHHHHHHc--CCCC--CccCchhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCCCCCHHHH
Confidence                       11001111222211  1111  1111124799999999999999998884   555   9999999877


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                        .++.+.+.+..         +|++..+...|+..+++.++.+.
T Consensus       171 --~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~  213 (491)
T PRK10982        171 --NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI  213 (491)
T ss_pred             --HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence              88877776542         89999999999999999888754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=1.8e-11  Score=98.16  Aligned_cols=159  Identities=17%  Similarity=0.108  Sum_probs=95.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-------eeCCcEEEEEeCC--CCCCCCCCcH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-------LKDGQVVNVIDTP--GLFDLSAGSE   87 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-------~~~~~~~~~iDtp--G~~~~~~~~~   87 (228)
                      .++..++|+|+||||||||+++|+|...+..|    .+..+.......       ........+.+.|  .+... ...+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~-tv~e  105 (286)
T PRK13646         31 EQGKYYAIVGQTGSGKSTLIQNINALLKPTTG----TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED-TVER  105 (286)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEECccccccchHHHHHhheEEEecChHhccchh-hHHH
Confidence            46679999999999999999999998765444    232222111000       0011223445544  22211 1111


Q ss_pred             HH--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           88 FV--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        88 ~~--------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      ++              .+....++...  +... -+.-.....+|+|+++++.++.+++.+|.   +++   |++.+|..
T Consensus       106 ~i~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~-~~~~~~~~~LSgGq~qrv~laraL~~~p~---illlDEPt~~LD~~  179 (286)
T PRK13646        106 EIIFGPKNFKMNLDEVKNYAHRLLMDL--GFSR-DVMSQSPFQMSGGQMRKIAIVSILAMNPD---IIVLDEPTAGLDPQ  179 (286)
T ss_pred             HHHhhHHHcCCCHHHHHHHHHHHHHHc--CCCh-hhhhCCcccCCHHHHHHHHHHHHHHhCCC---EEEEECCcccCCHH
Confidence            11              01111111110  1110 00011124799999999999999998884   555   99999998


Q ss_pred             ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..  ..+.+.++.+.          +|++..+...|++.+++.++.+.
T Consensus       180 ~~--~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~  225 (286)
T PRK13646        180 SK--RQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV  225 (286)
T ss_pred             HH--HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            77  78777776531          78999998999998888887754

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.30  E-value=9e-12  Score=98.91  Aligned_cols=164  Identities=13%  Similarity=0.122  Sum_probs=96.0

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC--CCCCCCCcH
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG--LFDLSAGSE   87 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG--~~~~~~~~~   87 (228)
                      +..-+++.+++|+|+||+|||||+++|+|...+.+|    .++........   .........+.+.|.  +.......+
T Consensus        33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~  108 (267)
T PRK15112         33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG----ELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQ  108 (267)
T ss_pred             eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC----EEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHH
Confidence            344456789999999999999999999999775554    22222111100   000111233444442  111100000


Q ss_pred             ---------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           88 ---------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        88 ---------------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                                     ...+++...+...  +++.- +.-.....+|.|+++++.++++++.+|   +++|   |++.+|.
T Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LS~G~~qrv~laral~~~p---~lllLDEPt~~LD~  182 (267)
T PRK15112        109 ILDFPLRLNTDLEPEQREKQIIETLRQV--GLLPD-HASYYPHMLAPGQKQRLGLARALILRP---KVIIADEALASLDM  182 (267)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHc--CCChH-HHhcCchhcCHHHHHHHHHHHHHHhCC---CEEEEcCCcccCCH
Confidence                           0001111111111  11000 000111479999999999999999888   4666   9999998


Q ss_pred             CccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          150 LEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ...  ..+.+.+.+.    .      +|....+...|++.+++.++.+.
T Consensus       183 ~~~--~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~  229 (267)
T PRK15112        183 SMR--SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV  229 (267)
T ss_pred             HHH--HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence            876  7777666553    1      78999998889998888887654

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=8.7e-12  Score=99.78  Aligned_cols=159  Identities=17%  Similarity=0.106  Sum_probs=95.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCCCC-CCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPGLF-DLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG~~-~~~~~~~~~~   90 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+..........     .......++.+.|... ...+..+++.
T Consensus        30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G----~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~  105 (283)
T PRK13636         30 KKGEVTAILGGNGAGKSTLFQNLNGILKPSSG----RILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVS  105 (283)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCcc----EEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHH
Confidence            46779999999999999999999998764444    333222211000     0111223445554211 1111111110


Q ss_pred             --------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           91 --------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        91 --------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                    +.....+...  +...  +.-.....+|.|+++++.+++++..+|   ++++   |++.+|.... 
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LS~G~~qrl~laraL~~~p---~lLilDEPt~gLD~~~~-  177 (283)
T PRK13636        106 FGAVNLKLPEDEVRKRVDNALKRT--GIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEP---KVLVLDEPTAGLDPMGV-  177 (283)
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHHC--CChh--hhhCCcccCCHHHHHHHHHHHHHHcCC---CEEEEeCCccCCCHHHH-
Confidence                          0011111111  1110  111112579999999999999999888   4665   9999998876 


Q ss_pred             hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       ..+.+.+....          +|++..+...|++.+++.++.+.
T Consensus       178 -~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~  221 (283)
T PRK13636        178 -SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI  221 (283)
T ss_pred             -HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence             66666554431          79999998899999988888754

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.30  E-value=1.3e-11  Score=97.93  Aligned_cols=162  Identities=19%  Similarity=0.181  Sum_probs=96.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee------eCCcEEEEEeCCC--CCCCCCCc
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------KDGQVVNVIDTPG--LFDLSAGS   86 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~iDtpG--~~~~~~~~   86 (228)
                      .-+++.+++|+|+||+|||||+++|+|...+.+|    .++..........      .......+.+.|.  +.......
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~  108 (265)
T TIGR02769        33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG----TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVR  108 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHH
Confidence            3456789999999999999999999998765444    2332221111000      0112234455542  22211111


Q ss_pred             HHHH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           87 EFVG---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        87 ~~~~---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                      +.+.               +.....+...  +.+.. +.-.....+|.|+++++.++++++.+|.   +++   |++.+|
T Consensus       109 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~-~~~~~~~~LSgGe~qrv~laral~~~p~---illLDEPt~~LD  182 (265)
T TIGR02769       109 QIIGEPLRHLTSLDESEQKARIAELLDMV--GLRSE-DADKLPRQLSGGQLQRINIARALAVKPK---LIVLDEAVSNLD  182 (265)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCC
Confidence            1110               0111111111  11100 0111124799999999999999998884   555   999999


Q ss_pred             CCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          149 DLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ....  ..+.+.+.+.    .      +|++..+...|+..+++.++.+.
T Consensus       183 ~~~~--~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~  230 (265)
T TIGR02769       183 MVLQ--AVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV  230 (265)
T ss_pred             HHHH--HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence            8766  6666655543    1      78999998899999888887654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.5e-12  Score=110.22  Aligned_cols=160  Identities=16%  Similarity=0.083  Sum_probs=95.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSE----   87 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~----   87 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+......... .   ........+.+.|.+.......+    
T Consensus        28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  103 (510)
T PRK09700         28 VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG----TITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYI  103 (510)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCcc----EEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhh
Confidence            356789999999999999999999998765444    22211110000 0   00011122333333222111111    


Q ss_pred             -----------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090           88 -----------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG  147 (228)
Q Consensus        88 -----------------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~  147 (228)
                                       .....+...+...  ++..  ..-.....+|+|+++++.++++++.+|.   ++|   |++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgG~~qrv~ia~al~~~p~---lllLDEPt~~L  176 (510)
T PRK09700        104 GRHLTKKVCGVNIIDWREMRVRAAMMLLRV--GLKV--DLDEKVANLSISHKQMLEIAKTLMLDAK---VIIMDEPTSSL  176 (510)
T ss_pred             ccccccccccccccCHHHHHHHHHHHHHHc--CCCC--CcccchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCC
Confidence                             0111111222111  1110  1111124799999999999999998884   666   99999


Q ss_pred             CCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          148 DDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       148 D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      |....  ..+.+.+.+..         +|++..+...|+..+++.++.+.
T Consensus       177 D~~~~--~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~  224 (510)
T PRK09700        177 TNKEV--DYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV  224 (510)
T ss_pred             CHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence            99877  78777766542         89999999999999998888753

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.30  E-value=1.2e-11  Score=96.39  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=92.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEE-eCCCCCCCCCCcHHHH---
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVI-DTPGLFDLSAGSEFVG---   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~i-DtpG~~~~~~~~~~~~---   90 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+.........  .........+. +.+.+.......+...   
T Consensus        45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~  120 (236)
T cd03267          45 EKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG----EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA  120 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHH
Confidence            46679999999999999999999998765444    22221111000  00011112233 3344432221111110   


Q ss_pred             -----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        91 -----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                                 +.+...+...  +.+..  .-.....+|.++++++.++.+++.+|.   +++   |++.+|....  +.
T Consensus       121 ~~~~~~~~~~~~~~~~~l~~~--gl~~~--~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEPt~~LD~~~~--~~  191 (236)
T cd03267         121 AIYDLPPARFKKRLDELSELL--DLEEL--LDTPVRQLSLGQRMRAEIAAALLHEPE---ILFLDEPTIGLDVVAQ--EN  191 (236)
T ss_pred             HHcCCCHHHHHHHHHHHHHHc--CChhH--hcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCCCCCCHHHH--HH
Confidence                       0000111100  11100  001114799999999999999998884   655   9999999877  78


Q ss_pred             HHHHhhccC----------CchHHHHHHhcCCeEEEeeCCC
Q 027090          157 LEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       157 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      +.+.+.+..          +|....+...|+..+++.++.+
T Consensus       192 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i  232 (236)
T cd03267         192 IRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL  232 (236)
T ss_pred             HHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence            887776541          6888888888888888877654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.30  E-value=5.7e-12  Score=121.25  Aligned_cols=163  Identities=16%  Similarity=0.156  Sum_probs=102.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+.........  .........+.+.+.+.+..+..+.+ ...
T Consensus      1962 I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG----~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L-~l~ 2036 (2272)
T TIGR01257      1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG----DATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHL-YLY 2036 (2272)
T ss_pred             EcCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc----EEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHH-HHH
Confidence            356789999999999999999999999875554    22222111100  00111223456666666544333322 111


Q ss_pred             HHHHh-----------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           94 VKCLG-----------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        94 ~~~~~-----------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                      .....           ...+..+.--+.-.....+|+|+++++.++.+++++|.   +++   |++.+|...+  +.+++
T Consensus      2037 a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~---VLLLDEPTsGLDp~sr--~~l~~ 2111 (2272)
T TIGR01257      2037 ARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP---LVLLDEPTTGMDPQAR--RMLWN 2111 (2272)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEECCCCCCCHHHH--HHHHH
Confidence            11000           00000110001111125799999999999999999884   666   9999999988  88888


Q ss_pred             HhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          160 FLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       160 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+..         +|++.++...|++.+++.+|++.
T Consensus      2112 lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~ 2149 (2272)
T TIGR01257      2112 TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ 2149 (2272)
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            776642         89999999999999998887643

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=6.3e-12  Score=100.12  Aligned_cols=159  Identities=18%  Similarity=0.097  Sum_probs=97.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC--CCCCCCCcHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG--LFDLSAGSEFVG   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG--~~~~~~~~~~~~   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.|.  +.. .+..+++.
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~e~l~  102 (274)
T PRK13647         28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG----RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS-STVWDDVA  102 (274)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce----EEEECCEECCCCCHHHHHhhEEEEecChhhhhcc-CcHHHHHH
Confidence            356789999999999999999999998765444    22222211100   000111234444442  221 11111110


Q ss_pred             --------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           91 --------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        91 --------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                    +.+...+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|.... 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LSgG~~qrv~laraL~~~p~---llllDEPt~~LD~~~~-  174 (274)
T PRK13647        103 FGPVNMGLDKDEVERRVEEALKAV--RMWD--FRDKPPYHLSYGQKKRVAIAGVLAMDPD---VIVLDEPMAYLDPRGQ-  174 (274)
T ss_pred             hhHHHcCCCHHHHHHHHHHHHHHC--CCHH--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECCCcCCCHHHH-
Confidence                          1111111110  1111  1111125799999999999999999884   555   9999999877 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       .++.+.+....         +|++..+.+.|++.+++.++.+.
T Consensus       175 -~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~  217 (274)
T PRK13647        175 -ETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL  217 (274)
T ss_pred             -HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence             77777776542         79999998999999999888754

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.30  E-value=3.2e-11  Score=88.98  Aligned_cols=129  Identities=14%  Similarity=0.105  Sum_probs=81.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+....        ......+.+.|.+.. .+    . .+...
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~~--------~~~i~~~~q~~~~~~-~t----v-~~nl~   85 (166)
T cd03223          24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG----RIGMPE--------GEDLLFLPQRPYLPL-GT----L-REQLI   85 (166)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECC--------CceEEEECCCCcccc-cc----H-HHHhh
Confidence            356789999999999999999999998764433    222111        011223334343321 11    1 11111


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------C
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------P  166 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~  166 (228)
                      .   .            ....+|.++++++.++++++.+|   ++++   |++.+|....  ..+.+.+.+..      +
T Consensus        86 ~---~------------~~~~LS~G~~~rv~laral~~~p---~~lllDEPt~~LD~~~~--~~l~~~l~~~~~tiiivs  145 (166)
T cd03223          86 Y---P------------WDDVLSGGEQQRLAFARLLLHKP---KFVFLDEATSALDEESE--DRLYQLLKELGITVISVG  145 (166)
T ss_pred             c---c------------CCCCCCHHHHHHHHHHHHHHcCC---CEEEEECCccccCHHHH--HHHHHHHHHhCCEEEEEe
Confidence            0   0            12489999999999999999888   4555   8999998877  77777776632      4


Q ss_pred             chHHHHHHhcCCeEEEe
Q 027090          167 KPLKEILQLCDNRCVLF  183 (228)
Q Consensus       167 ~~~~~~~~~~~~~~~~~  183 (228)
                      |+... ...|++.+.+.
T Consensus       146 h~~~~-~~~~d~i~~l~  161 (166)
T cd03223         146 HRPSL-WKFHDRVLDLD  161 (166)
T ss_pred             CChhH-HhhCCEEEEEc
Confidence            55543 34566555443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.30  E-value=1.4e-12  Score=96.90  Aligned_cols=169  Identities=13%  Similarity=0.130  Sum_probs=101.2

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeeeeC---------CcEEEEEeCCCCC
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD---------GQVVNVIDTPGLF   80 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~---------~~~~~~iDtpG~~   80 (228)
                      ....-+++.+.+++||+|||||||+++|..-.....+     ...+..  ......+.         .+.-.+++-|.-+
T Consensus        26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~-----~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF  100 (253)
T COG1117          26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG-----ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF  100 (253)
T ss_pred             CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcC-----ceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence            3444566789999999999999999998765432111     111111  11111111         1224667777644


Q ss_pred             CCCCCcHH---------HHHHHHHHHhhccCCccEEEEE---E-eCCCCCCHHHHHHHHHHHHHhCccccccEEE---EE
Q 027090           81 DLSAGSEF---------VGKEIVKCLGMAKDGIHAFLVV---F-SVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VF  144 (228)
Q Consensus        81 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~il~v---~-~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~  144 (228)
                      ..+--+.-         ..+++-..++.+.+.+...=.|   + +..-++|+|++|+|=+++++.-+|.   ++|   |.
T Consensus       101 p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~Pe---VlLmDEPt  177 (253)
T COG1117         101 PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPE---VLLMDEPT  177 (253)
T ss_pred             CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCc---EEEecCcc
Confidence            32100000         0011111121111111111111   1 2224799999999999999977774   666   88


Q ss_pred             eCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          145 TGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       145 ~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      +.+|+...  ..+++.+.+++        +|.+++..+.++..+++..|.+...
T Consensus       178 SALDPIsT--~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~  229 (253)
T COG1117         178 SALDPIST--LKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF  229 (253)
T ss_pred             cccCchhH--HHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence            99999988  88888887766        8999999999999988888876543

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=9.4e-11  Score=81.68  Aligned_cols=161  Identities=16%  Similarity=0.105  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .++.|+|.+.+|||||+-..++....  ...-.+..++....++-. .+...++++||.|..           .+.....
T Consensus        22 fKlliiGnssvGKTSfl~ry~ddSFt--~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE-----------ryrtiTT   88 (193)
T KOG0093|consen   22 FKLLIIGNSSVGKTSFLFRYADDSFT--SAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE-----------RYRTITT   88 (193)
T ss_pred             eeEEEEccCCccchhhhHHhhccccc--cceeeeeeeeEEEeEeeecccEEEEEEEecccch-----------hhhHHHH
Confidence            48999999999999999999988652  122223333343333221 223458999999922           1233334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ..+++++++++++|.++.-|..-.+ |.-.+....-.  +-+++|+.||||....  +.+....       -..+.+..+
T Consensus        89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~--naqvilvgnKCDmd~e--Rvis~e~-------g~~l~~~LG  157 (193)
T KOG0093|consen   89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD--NAQVILVGNKCDMDSE--RVISHER-------GRQLADQLG  157 (193)
T ss_pred             HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc--CceEEEEecccCCccc--eeeeHHH-------HHHHHHHhC
Confidence            5568899999999998666665544 43334333222  2389999999998765  4433211       112222221


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      -      .-...+++.+-+++++++++...+-+
T Consensus       158 f------efFEtSaK~NinVk~~Fe~lv~~Ic~  184 (193)
T KOG0093|consen  158 F------EFFETSAKENINVKQVFERLVDIICD  184 (193)
T ss_pred             h------HHhhhcccccccHHHHHHHHHHHHHH
Confidence            1      11233555567777777776665544

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=3.8e-12  Score=112.38  Aligned_cols=155  Identities=17%  Similarity=0.084  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHH-------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-------   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~-------   88 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|.    +..... ..+....+...     +.+.........       
T Consensus       335 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~----i~~~~~-~~igy~~Q~~~-----~~l~~~~~~~~~~~~~~~~  404 (638)
T PRK10636        335 LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGE----IGLAKG-IKLGYFAQHQL-----EFLRADESPLQHLARLAPQ  404 (638)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe----EEECCC-EEEEEecCcch-----hhCCccchHHHHHHHhCch
Confidence            3567899999999999999999999987655542    221100 00010111000     000000000000       


Q ss_pred             -HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc
Q 027090           89 -VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE  164 (228)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~  164 (228)
                       ....+...+...  ++..- ........+|+|+++++.++..++.++   +++|   |+|++|....  ..+.+++..+
T Consensus       405 ~~~~~~~~~L~~~--~l~~~-~~~~~~~~LSgGekqRl~La~~l~~~p---~lLlLDEPt~~LD~~~~--~~l~~~L~~~  476 (638)
T PRK10636        405 ELEQKLRDYLGGF--GFQGD-KVTEETRRFSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMR--QALTEALIDF  476 (638)
T ss_pred             hhHHHHHHHHHHc--CCChh-HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHHHHHHc
Confidence             001111111111  11000 011111479999999999999998877   4666   9999999988  8999988876


Q ss_pred             C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          165 C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       165 ~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .      +|+...+...|+.++++.++.+.
T Consensus       477 ~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~  506 (638)
T PRK10636        477 EGALVVVSHDRHLLRSTTDDLYLVHDGKVE  506 (638)
T ss_pred             CCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            5      89999999999999988887753

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.29  E-value=1e-11  Score=96.49  Aligned_cols=165  Identities=16%  Similarity=0.156  Sum_probs=93.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCC--CCCCCCCcHHH----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPG--LFDLSAGSEFV----   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG--~~~~~~~~~~~----   89 (228)
                      +++.+++|+|+||+|||||+++|+|...+...+..+.+......... .........+.+.|.  +.......+..    
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~   89 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETL   89 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHH
Confidence            46679999999999999999999998764100012222222111100 000112234445543  22211111111    


Q ss_pred             ----------HHHHHHHHhhccCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           90 ----------GKEIVKCLGMAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        90 ----------~~~~~~~~~~~~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                                .+.+...+...  +.+.. -+.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  .
T Consensus        90 ~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~---vllLDEPt~~LD~~~~--~  162 (230)
T TIGR02770        90 RSLGKLSKQARALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPP---FLIADEPTTDLDVVNQ--A  162 (230)
T ss_pred             HHcCccHHHHHHHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCC---EEEEcCCccccCHHHH--H
Confidence                      00111111111  11100 00111114799999999999999998883   555   8999998766  6


Q ss_pred             hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+.+.+..          +|...++...|+..+++.++.+.
T Consensus       163 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  205 (230)
T TIGR02770       163 RVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV  205 (230)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            6666555321          78999998999999888888764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=2.2e-11  Score=97.15  Aligned_cols=159  Identities=21%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCC--CCCCCCCcHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPG--LFDLSAGSEFV   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG--~~~~~~~~~~~   89 (228)
                      .++..++|+|+||+|||||+++|+|...+..|    .++.........     .......++.+.|.  +... ...+.+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~-tv~e~i  100 (275)
T PRK13639         26 EKGEMVALLGPNGAGKSTLFLHFNGILKPTSG----EVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP-TVEEDV  100 (275)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc----EEEECCEECccccchHHHHHhheEEEeeChhhhhccc-cHHHHH
Confidence            46679999999999999999999998764444    232222111000     00111233444442  2221 111111


Q ss_pred             H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      .              ......+...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LS~Gq~qrv~laral~~~p~---llllDEPt~gLD~~~~  173 (275)
T PRK13639        101 AFGPLNLGLSKEEVEKRVKEALKAV--GMEG--FENKPPHHLSGGQKKRVAIAGILAMKPE---IIVLDEPTSGLDPMGA  173 (275)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHC--CCch--hhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH
Confidence            0              0111111111  1110  1111125799999999999999998884   555   9999999877


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                        ..+.+.+....         +|++..+.+.|++.+++.++.+..
T Consensus       174 --~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~  217 (275)
T PRK13639        174 --SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK  217 (275)
T ss_pred             --HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence              77777776542         789999988999988888876543

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.29  E-value=1.1e-11  Score=92.42  Aligned_cols=137  Identities=20%  Similarity=0.212  Sum_probs=86.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.........  .........+.+.|.+... .    ..+.+
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~-t----v~~~i   95 (178)
T cd03247          25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG----EITLDGVPVSDLEKALSSLISVLNQRPYLFDT-T----LRNNL   95 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC----EEEECCEEHHHHHHHHHhhEEEEccCCeeecc-c----HHHhh
Confidence            346679999999999999999999998764333    22221111000  0001112233444433221 0    00110


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC-----
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC-----  165 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~-----  165 (228)
                                          ...+|.++++++.++++++.+|   ++++   |++.+|....  +.+.+.+.+..     
T Consensus        96 --------------------~~~LS~G~~qrv~laral~~~p---~~lllDEP~~~LD~~~~--~~l~~~l~~~~~~~ti  150 (178)
T cd03247          96 --------------------GRRFSGGERQRLALARILLQDA---PIVLLDEPTVGLDPITE--RQLLSLIFEVLKDKTL  150 (178)
T ss_pred             --------------------cccCCHHHHHHHHHHHHHhcCC---CEEEEECCcccCCHHHH--HHHHHHHHHHcCCCEE
Confidence                                2479999999999999999888   4666   8999998877  77777776532     


Q ss_pred             ---CchHHHHHHhcCCeEEEeeCCC
Q 027090          166 ---PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       166 ---~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                         +|+...+. .|++.+++.++.+
T Consensus       151 i~~sh~~~~~~-~~d~~~~l~~g~i  174 (178)
T cd03247         151 IWITHHLTGIE-HMDKILFLENGKI  174 (178)
T ss_pred             EEEecCHHHHH-hCCEEEEEECCEE
Confidence               67777664 5776766666653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1e-11  Score=104.76  Aligned_cols=165  Identities=18%  Similarity=0.123  Sum_probs=100.0

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE---eeeeeCCcEEEEEeCCCCCC-------
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK---TTVLKDGQVVNVIDTPGLFD-------   81 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~iDtpG~~~-------   81 (228)
                      ....-+++.+++++|++|||||||++.|.|...+..|    .++......   ....+......+-+-|-++.       
T Consensus       340 l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G----~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi  415 (559)
T COG4988         340 LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG----EIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI  415 (559)
T ss_pred             ceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc----eEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHh
Confidence            3345577889999999999999999999999875444    222221111   00111111223333333322       


Q ss_pred             ----CCCCcHHHHHHHHHHHhhc-----cCCccEEEEE-EeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           82 ----LSAGSEFVGKEIVKCLGMA-----KDGIHAFLVV-FSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~~~-----~~~~~~il~v-~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                          ....+    +++....+..     .+.++.+=.. -+.+..+|+|+.+++.+++++..++   ++++   |.+++|
T Consensus       416 ~l~~~~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~---~l~llDEpTA~LD  488 (559)
T COG4988         416 LLARPDASD----EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA---SLLLLDEPTAHLD  488 (559)
T ss_pred             hccCCcCCH----HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC---CEEEecCCccCCC
Confidence                11112    2233322211     1112222222 2334679999999999999998876   5777   899999


Q ss_pred             CCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          149 DLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ...+  ..+.+.+.+..        +|.+..+ ..++.++++.+|.+...
T Consensus       489 ~etE--~~i~~~l~~l~~~ktvl~itHrl~~~-~~~D~I~vld~G~l~~~  535 (559)
T COG4988         489 AETE--QIILQALQELAKQKTVLVITHRLEDA-ADADRIVVLDNGRLVEQ  535 (559)
T ss_pred             HhHH--HHHHHHHHHHHhCCeEEEEEcChHHH-hcCCEEEEecCCceecc
Confidence            8876  66666665543        6766654 57888899988887654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=1.2e-11  Score=96.70  Aligned_cols=159  Identities=13%  Similarity=0.115  Sum_probs=95.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcHHHH---
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFVG---   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~~~~---   90 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .++.......   ..........+.+.|.++.. ...+...   
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~-tv~e~l~~~~  101 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG----SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGP  101 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEEhhhcChHHhhhcEEEEecCchhchh-hHHHHHhcch
Confidence            45679999999999999999999998764444    2222211110   00001112344455544321 1111100   


Q ss_pred             -------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHH
Q 027090           91 -------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        91 -------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~  160 (228)
                             .+....+...  +...- +.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  +.+.+.
T Consensus       102 ~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEPt~~LD~~~~--~~l~~~  173 (241)
T PRK14250        102 MLKGEKNVDVEYYLSIV--GLNKE-YATRDVKNLSGGEAQRVSIARTLANNPE---VLLLDEPTSALDPTST--EIIEEL  173 (241)
T ss_pred             hhcCcHHHHHHHHHHHc--CCCHH-HhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH--HHHHHH
Confidence                   0111111111  11000 0011124799999999999999998884   555   9999998876  777666


Q ss_pred             hhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          161 LGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       161 ~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +...    .      +|+...+...|+..+++.++.+.
T Consensus       174 l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~  211 (241)
T PRK14250        174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV  211 (241)
T ss_pred             HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence            6543    1      78999988899999888888764

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.29  E-value=8e-11  Score=101.27  Aligned_cols=119  Identities=16%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC--CcccccC-C-----------------CCCcceeeEeEeeeeeCCcEEEEEeC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR--KAFKASA-G-----------------SSGVTKTCEMKTTVLKDGQVVNVIDT   76 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~--~~~~~~~-~-----------------~~~~t~~~~~~~~~~~~~~~~~~iDt   76 (228)
                      .+.++|+|+|+.|+|||||+++|+..  .....+. .                 ....+....... ..+++..+.++||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~-~~~~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQ-FPYRDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEE-EEECCEEEEEEEC
Confidence            34579999999999999999999621  1100000 0                 011222222222 2256778999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ||..+..       .+....+    ..+|++++|+++.++........++.+...   .  .|+++++||+|....
T Consensus        87 PG~~df~-------~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~--iPiiv~iNK~D~~~a  146 (526)
T PRK00741         87 PGHEDFS-------EDTYRTL----TAVDSALMVIDAAKGVEPQTRKLMEVCRLR---D--TPIFTFINKLDRDGR  146 (526)
T ss_pred             CCchhhH-------HHHHHHH----HHCCEEEEEEecCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCccccc
Confidence            9965421       2233333    356999999999877766666655544321   2  279999999998654

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=1.7e-11  Score=97.92  Aligned_cols=158  Identities=17%  Similarity=0.108  Sum_probs=93.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee---eeCCcEEEEEeCCC-CCCCCCCcHHH---
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTPG-LFDLSAGSEFV---   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~iDtpG-~~~~~~~~~~~---   89 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+..........   .......++.+.|. +....+..+++   
T Consensus        31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G----~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~  106 (279)
T PRK13635         31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG----TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG  106 (279)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc----EEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhh
Confidence            56779999999999999999999999775444    233222111100   00112234444441 22111111111   


Q ss_pred             -----------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           90 -----------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        90 -----------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                                 .+.+...+...  +...  +.-.....+|.|+++++.++++++.+|.   ++|   |++.+|....  .
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LS~G~~qrv~laral~~~p~---lllLDEPt~gLD~~~~--~  177 (279)
T PRK13635        107 LENIGVPREEMVERVDQALRQV--GMED--FLNREPHRLSGGQKQRVAIAGVLALQPD---IIILDEATSMLDPRGR--R  177 (279)
T ss_pred             HhhCCCCHHHHHHHHHHHHHHc--CChh--hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--H
Confidence                       01111111111  1111  1111124799999999999999999884   555   9999999877  7


Q ss_pred             hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+.+....          +|++..+. .|++.+++.++.+.
T Consensus       178 ~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~  219 (279)
T PRK13635        178 EVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL  219 (279)
T ss_pred             HHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE
Confidence            7777665432          68888875 58888888887654

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.29  E-value=1.1e-11  Score=99.14  Aligned_cols=160  Identities=19%  Similarity=0.119  Sum_probs=94.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-------eeeCCcEEEEEeCCC--CCCCCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-------VLKDGQVVNVIDTPG--LFDLSAGS   86 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~~~iDtpG--~~~~~~~~   86 (228)
                      -+++.+++|+|+||+|||||+++|+|...+.+|    .+.........       .........+.+.|.  +... +..
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~-tv~  104 (280)
T PRK13649         30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG----SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE-TVL  104 (280)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEEccccccccCHHHHHhheEEEeeChhhhhccc-cHH
Confidence            356779999999999999999999998765444    22221111100       000111233444442  2221 111


Q ss_pred             HHHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           87 EFVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        87 ~~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      +++.              +.....+...  +.... +.-.....+|.|+++++.++++++.+|.   ++|   |++.+|.
T Consensus       105 e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~~LD~  178 (280)
T PRK13649        105 KDVAFGPQNFGVSQEEAEALAREKLALV--GISES-LFEKNPFELSGGQMRRVAIAGILAMEPK---ILVLDEPTAGLDP  178 (280)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCH
Confidence            1110              0000111110  11100 0111124799999999999999998884   555   9999998


Q ss_pred             CccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          150 LEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ...  +.+.+.+.+..         +|....+...|+..+++.++.+.
T Consensus       179 ~~~--~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~  224 (280)
T PRK13649        179 KGR--KELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV  224 (280)
T ss_pred             HHH--HHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE
Confidence            877  77777665432         78999898999998888887754

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.28  E-value=2.8e-11  Score=101.54  Aligned_cols=173  Identities=17%  Similarity=0.177  Sum_probs=108.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ...+..||+|+|.-|+||||||-+|+...++..-+...+. +.....  ......+..++||..-.+           -.
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~-i~IPad--vtPe~vpt~ivD~ss~~~-----------~~   70 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR-ILIPAD--VTPENVPTSIVDTSSDSD-----------DR   70 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc-cccCCc--cCcCcCceEEEecccccc-----------hh
Confidence            3455689999999999999999999988875443222111 111111  123455589999974211           11


Q ss_pred             HHHhhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchh----hHHHHhhccCCch
Q 027090           95 KCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK----TLEDFLGHECPKP  168 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~--~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~----~~~~~~~~~~~~~  168 (228)
                      .++....+.+|+++++...++  .+..-...||-+++..+++....|+|+|.||+|.......    .+.-++++     
T Consensus        71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~-----  145 (625)
T KOG1707|consen   71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA-----  145 (625)
T ss_pred             HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH-----
Confidence            112223345588888887763  3444456799999999977777799999999998754112    12222222     


Q ss_pred             HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCC
Q 027090          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYT  217 (228)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~  217 (228)
                      +.++.           ..+..+|.+..++.|++.+-++++.-.-.+.|.
T Consensus       146 f~EiE-----------tciecSA~~~~n~~e~fYyaqKaVihPt~PLyd  183 (625)
T KOG1707|consen  146 FAEIE-----------TCIECSALTLANVSELFYYAQKAVIHPTSPLYD  183 (625)
T ss_pred             hHHHH-----------HHHhhhhhhhhhhHhhhhhhhheeeccCccccc
Confidence            33433           345567777788888888777776654444443

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=4.3e-11  Score=94.59  Aligned_cols=165  Identities=15%  Similarity=0.093  Sum_probs=97.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++..++|+|+||+|||||+++|+|...+.. ....+.+.........     .........+.+.|.+.. .+..+++.
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~  114 (258)
T PRK14268         36 PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVA  114 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHH
Confidence            4667999999999999999999999864210 0011222222111100     001112345556666544 22222211


Q ss_pred             H--------------HHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           91 K--------------EIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        91 ~--------------~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      -              .+...+...  +....+  ..-.....+|.|+++++.++++++.+|.   +++   |++.+|...
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~---llllDEPt~~LD~~~  189 (258)
T PRK14268        115 YGPRIHGANKKDLDGVVENALRSA--ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPK---IILFDEPTSALDPIS  189 (258)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHc--CCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCCcccCHHH
Confidence            0              001111111  110000  0011124799999999999999998884   555   899999987


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.+++..        +|+...+...|++.+++.++.+..
T Consensus       190 ~--~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  233 (258)
T PRK14268        190 T--ARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE  233 (258)
T ss_pred             H--HHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            7  77777776542        789999989999999998887643

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=1.6e-11  Score=96.66  Aligned_cols=167  Identities=13%  Similarity=0.071  Sum_probs=97.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++.+++|+|+||+|||||+++|+|...+ ......+.+.........     .........+.+.|.++.. ...++..
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~enl~  106 (251)
T PRK14251         28 EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPF-SVYDNVA  106 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCC-cHHHHHH
Confidence            45679999999999999999999998641 000011222222211100     0011223455666666532 2222111


Q ss_pred             HHH-----------HHHHhhccCCccE---E-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           91 KEI-----------VKCLGMAKDGIHA---F-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        91 ~~~-----------~~~~~~~~~~~~~---i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      -..           ...+.......+.   . ...-.....+|.|+++++.+++++..+|.   +++   |++.+|....
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~---llllDEP~~~LD~~~~  183 (251)
T PRK14251        107 YGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPK---VVLLDEPTSALDPISS  183 (251)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCC---EEEecCCCccCCHHHH
Confidence            000           0000000000111   0 00011124799999999999999998884   555   8999998877


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                        +.+.+.+.+..        +|....+.+.|++.+++.++.+..
T Consensus       184 --~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~  226 (251)
T PRK14251        184 --SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE  226 (251)
T ss_pred             --HHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence              77777776542        789999999999988888887643

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=5.4e-12  Score=108.92  Aligned_cols=161  Identities=15%  Similarity=0.116  Sum_probs=96.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcc--cccCCCCCcceeeEeEeee----eeCCcEEEEEeCCCCCCCCCCcH-
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAF--KASAGSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDLSAGSE-   87 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~--~~~~~~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~~~~~~~~~-   87 (228)
                      .-.++..++|+|+||||||||+++|+|...+  .+|    .+..........    ........+.+.|.+.......+ 
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~  102 (506)
T PRK13549         27 KVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEG----EIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLEN  102 (506)
T ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCe----EEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHH
Confidence            3356789999999999999999999998653  233    222111100000    00011223344443322111111 


Q ss_pred             ----------------HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           88 ----------------FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        88 ----------------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                                      ...+.+...+...  +...  +.-.....+|+|+++++.++++++.+|.   ++|   |++.+|
T Consensus       103 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGqkqrv~la~al~~~p~---lllLDEPt~~LD  175 (506)
T PRK13549        103 IFLGNEITPGGIMDYDAMYLRAQKLLAQL--KLDI--NPATPVGNLGLGQQQLVEIAKALNKQAR---LLILDEPTASLT  175 (506)
T ss_pred             hhhcccccccCCcCHHHHHHHHHHHHHHc--CCCC--CcccchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCC
Confidence                            1111111222111  1110  1111124799999999999999998884   555   899999


Q ss_pred             CCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          149 DLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ....  .++.+.+.++.         +|++..+...|+..+++.++.+.
T Consensus       176 ~~~~--~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~  222 (506)
T PRK13549        176 ESET--AVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI  222 (506)
T ss_pred             HHHH--HHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence            9877  77777775542         89999999999999998887653

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.28  E-value=1.5e-12  Score=101.71  Aligned_cols=162  Identities=17%  Similarity=0.159  Sum_probs=98.0

Q ss_pred             ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcE--EEEEeCCCCCCCCCC
Q 027090           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQV--VNVIDTPGLFDLSAG   85 (228)
Q Consensus        11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~--~~~iDtpG~~~~~~~   85 (228)
                      +.+..-+.+..++++|+||||||||+++|.|...++.|.    +........   ......++  +.+-|.. ++.+.+.
T Consensus        20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~----I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA-LF~HmtV   94 (345)
T COG1118          20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR----IRLNGRVLFDVSNLAVRDRKVGFVFQHYA-LFPHMTV   94 (345)
T ss_pred             cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCce----EEECCEeccchhccchhhcceeEEEechh-hcccchH
Confidence            344455677899999999999999999999998876662    222111000   00011111  2333332 3222221


Q ss_pred             cHHH-------------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---E
Q 027090           86 SEFV-------------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---V  143 (228)
Q Consensus        86 ~~~~-------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v  143 (228)
                      .+++                   ..++...+...       -+--.....+|+++++++.+++++...|   ++++   |
T Consensus        95 a~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-------~la~ryP~QLSGGQrQRVALARALA~eP---~vLLLDEP  164 (345)
T COG1118          95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-------GLADRYPAQLSGGQRQRVALARALAVEP---KVLLLDEP  164 (345)
T ss_pred             HhhhhhcccccccCCChhhHHHHHHHHHHHhccc-------chhhcCchhcChHHHHHHHHHHHhhcCC---CeEeecCC
Confidence            1111                   01111111110       0001111469999999999999998877   4666   8


Q ss_pred             EeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          144 FTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       144 ~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +..+|..-+  .+++..+.++.          +|+..+..+.|+++.++.+|.+..
T Consensus       165 f~ALDa~vr--~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq  218 (345)
T COG1118         165 FGALDAKVR--KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ  218 (345)
T ss_pred             chhhhHHHH--HHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence            999997655  55555555433          899999999999999999997653

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.28  E-value=1.5e-11  Score=100.24  Aligned_cols=163  Identities=13%  Similarity=0.140  Sum_probs=99.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCC--CCCCCCCCc
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTP--GLFDLSAGS   86 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtp--G~~~~~~~~   86 (228)
                      .-.++..++|+|+||+|||||+++|+|...+.+|    .+..........      ........+.+.|  .+.......
T Consensus        43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G----~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~  118 (331)
T PRK15079         43 RLYEGETLGVVGESGCGKSTFARAIIGLVKATDG----EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIG  118 (331)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCc----EEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHH
Confidence            3456789999999999999999999998764443    233222111000      0112234455555  233222222


Q ss_pred             HHHHH----------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090           87 EFVGK----------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG  147 (228)
Q Consensus        87 ~~~~~----------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~  147 (228)
                      +++..                .....+...  +...- +.-.....+|+|+++++.++.++..+|.   ++|   |++.+
T Consensus       119 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~v--gl~~~-~~~~~p~~LSgG~~QRv~iArAL~~~P~---llilDEPts~L  192 (331)
T PRK15079        119 EIIAEPLRTYHPKLSRQEVKDRVKAMMLKV--GLLPN-LINRYPHEFSGGQCQRIGIARALILEPK---LIICDEPVSAL  192 (331)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHc--CCChH-HhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccC
Confidence            22110                001111111  11000 0111125799999999999999998884   666   88999


Q ss_pred             CCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          148 DDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       148 D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      |....  .++.+.++...          +|++..+...|++++++.++.+..
T Consensus       193 D~~~~--~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive  242 (331)
T PRK15079        193 DVSIQ--AQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE  242 (331)
T ss_pred             CHHHH--HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            98877  77776665432          799999999999999998887653

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=2e-11  Score=97.61  Aligned_cols=157  Identities=15%  Similarity=0.080  Sum_probs=93.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCC--CCCCCCCcHH--
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPG--LFDLSAGSEF--   88 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG--~~~~~~~~~~--   88 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .++........    .........+.+.|.  +... ...+.  
T Consensus        34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G----~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~-~v~~~l~  108 (280)
T PRK13633         34 KKGEFLVILGRNGSGKSTIAKHMNALLIPSEG----KVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT-IVEEDVA  108 (280)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEeccccccHHHHhhheEEEecChhhhhccc-cHHHHHH
Confidence            46679999999999999999999999775444    23322211100    000111233444442  1111 11110  


Q ss_pred             ------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           89 ------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        89 ------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                  ..+.+...+...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|.... 
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPt~gLD~~~~-  180 (280)
T PRK13633        109 FGPENLGIPPEEIRERVDESLKKV--GMYE--YRRHAPHLLSGGQKQRVAIAGILAMRPE---CIIFDEPTAMLDPSGR-  180 (280)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHC--CCHh--HhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence                        001111111111  1111  1111225899999999999999999884   555   9999999877 


Q ss_pred             hhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       ..+.+.+....          +|++..+.. |++.+++.++.+.
T Consensus       181 -~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~  223 (280)
T PRK13633        181 -REVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV  223 (280)
T ss_pred             -HHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEE
Confidence             77777766431          688888765 9888888887654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.28  E-value=6.5e-12  Score=108.29  Aligned_cols=161  Identities=17%  Similarity=0.103  Sum_probs=97.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHH--
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEF--   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~--   88 (228)
                      .-.++..++|+|+||+|||||+++|+|...+.+|    .+.........    .........+.+.|.+....+..++  
T Consensus        26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~  101 (501)
T PRK11288         26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAG----SILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY  101 (501)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC----EEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHH
Confidence            3456789999999999999999999998765444    22111110000    0001112233444443322111111  


Q ss_pred             ---------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           89 ---------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        89 ---------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                                     ..+.+...+...  +....  .-.....+|+|+++++.+++++..+|   +++|   |++.+|..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LSgGq~qrv~laral~~~p---~lllLDEPt~~LD~~  174 (501)
T PRK11288        102 LGQLPHKGGIVNRRLLNYEAREQLEHL--GVDID--PDTPLKYLSIGQRQMVEIAKALARNA---RVIAFDEPTSSLSAR  174 (501)
T ss_pred             hcccccccCCCCHHHHHHHHHHHHHHc--CCCCC--cCCchhhCCHHHHHHHHHHHHHHhCC---CEEEEcCCCCCCCHH
Confidence                           111111222211  11100  11111479999999999999998888   3666   99999998


Q ss_pred             ccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          151 EDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..  .++.+.+.+..         +|++..+...|+..+++.++.+.
T Consensus       175 ~~--~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~  219 (501)
T PRK11288        175 EI--EQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV  219 (501)
T ss_pred             HH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            77  88887776542         89999999999999888887653

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.28  E-value=1.8e-11  Score=96.70  Aligned_cols=162  Identities=11%  Similarity=0.082  Sum_probs=92.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++.+++|+|+||+|||||++.|+|...+.. .+..+.+........   .  .........+.+.+.+....+..++..
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~  107 (258)
T PRK14241         28 EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV  107 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHH
Confidence            4677999999999999999999999864210 001122222211110   0  001112234445555443322222211


Q ss_pred             HHH-----------HHHHhhccCCccE--EE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           91 KEI-----------VKCLGMAKDGIHA--FL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        91 ~~~-----------~~~~~~~~~~~~~--il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      ...           ...........+.  .+  ..-.....+|.|+++++.++++++.+|   ++++   |++.+|....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~~~  184 (258)
T PRK14241        108 AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEP---DVLLMDEPCSALDPIST  184 (258)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHHHH
Confidence            000           0000000001110  00  011112579999999999999999888   3665   8999998877


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF  183 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  183 (228)
                        ..+.+.+.+..        +|....+.+.|++.+++.
T Consensus       185 --~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~  221 (258)
T PRK14241        185 --LAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFN  221 (258)
T ss_pred             --HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence              77777776542        789999989999887775

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.28  E-value=6.5e-12  Score=110.39  Aligned_cols=160  Identities=14%  Similarity=0.129  Sum_probs=96.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCC-------c
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAG-------S   86 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~-------~   86 (228)
                      +++.+++|+|++|+|||||++.|+|.. +.+|    .+..+......   .........+-+.|-+++..-.       .
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G----~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~  448 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL-PYQG----SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP  448 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc----EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC
Confidence            578899999999999999999999987 5444    23322211100   0001112233333433322100       0


Q ss_pred             HHHHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           87 EFVGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        87 ~~~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                      +...+++..+...+         ..+.|..  +-+....+|+|++|++.++++++.++   ++++   +++.+|....  
T Consensus       449 ~~~~eei~~al~~a~l~~~i~~lp~G~dT~--vge~G~~LSGGQrQRialARAll~~~---~IliLDE~TSaLD~~te--  521 (588)
T PRK11174        449 DASDEQLQQALENAWVSEFLPLLPQGLDTP--IGDQAAGLSVGQAQRLALARALLQPC---QLLLLDEPTASLDAHSE--  521 (588)
T ss_pred             CCCHHHHHHHHHHhCHHHHHHhcccccccc--cccCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH--
Confidence            01112333322211         1223322  22333579999999999999999988   4666   8899998877  


Q ss_pred             hhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          155 KTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       155 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +.+.+.+.+..        +|.... .+.|+.++++.+|.+..
T Consensus       522 ~~i~~~l~~~~~~~TvIiItHrl~~-i~~aD~Iivl~~G~i~e  563 (588)
T PRK11174        522 QLVMQALNAASRRQTTLMVTHQLED-LAQWDQIWVMQDGQIVQ  563 (588)
T ss_pred             HHHHHHHHHHhCCCEEEEEecChHH-HHhCCEEEEEeCCeEee
Confidence            77777666542        677754 56799999998887654

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=7.1e-12  Score=99.83  Aligned_cols=159  Identities=16%  Similarity=0.067  Sum_probs=93.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCC-CCCCCCcHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGL-FDLSAGSEFV-   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~-~~~~~~~~~~-   89 (228)
                      -.++..++|+|+||+|||||+++|+|...+..|    .+.........    .........+.+.|.. .......+++ 
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~  100 (274)
T PRK13644         25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG----KVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLA  100 (274)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHH
Confidence            356789999999999999999999998764444    22222211100    0001112344555431 1111111111 


Q ss_pred             -------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        90 -------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                   .+.....+...  +...  +.-.....+|.|+++++.++++++.+|.   ++|   |++.+|.... 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrv~laral~~~p~---lllLDEPt~gLD~~~~-  172 (274)
T PRK13644        101 FGPENLCLPPIEIRKRVDRALAEI--GLEK--YRHRSPKTLSGGQGQCVALAGILTMEPE---CLIFDEVTSMLDPDSG-  172 (274)
T ss_pred             hhHHHcCCCHHHHHHHHHHHHHHC--CCHH--HhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence                         00111111110  1110  1111125799999999999999998884   666   9999998876 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       ..+.+.+++..         +|++..+ ..|++.+++.++.+.
T Consensus       173 -~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~~G~i~  214 (274)
T PRK13644        173 -IAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIV  214 (274)
T ss_pred             -HHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEECCEEE
Confidence             77777665432         7888887 569988888887754

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.28  E-value=3.4e-10  Score=94.15  Aligned_cols=88  Identities=19%  Similarity=0.166  Sum_probs=54.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce-eeEeEeeee-----------------------eCCcEEEEEe
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVL-----------------------KDGQVVNVID   75 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~-----------------------~~~~~~~~iD   75 (228)
                      .+|+|+|.+++|||||+|+|++....   ...++.++ +........                       .....+.++|
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~---~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D   78 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVE---IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELID   78 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccc---ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEE
Confidence            47999999999999999999987642   22333333 222211110                       1123478999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090           76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (228)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (228)
                      |||+.............+...+    +.+|++++|++..
T Consensus        79 ~aGl~~ga~~g~glg~~fL~~i----r~ad~ll~Vvd~~  113 (396)
T PRK09602         79 VAGLVPGAHEGRGLGNQFLDDL----RQADALIHVVDAS  113 (396)
T ss_pred             cCCcCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence            9998765433333333333333    4569999999985

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.28  E-value=7e-11  Score=83.77  Aligned_cols=159  Identities=16%  Similarity=0.108  Sum_probs=101.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHH-H
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK-C   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~-~   96 (228)
                      .+..++|.+-+|||+|++..+..+.  .+....++..+.-...++...  ...++++||+|            ++.++ .
T Consensus         9 frlivigdstvgkssll~~ft~gkf--aelsdptvgvdffarlie~~pg~riklqlwdtag------------qerfrsi   74 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEGKF--AELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG------------QERFRSI   74 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcCcc--cccCCCccchHHHHHHHhcCCCcEEEEEEeeccc------------hHHHHHH
Confidence            4889999999999999999987765  222222333222211122222  33589999999            44444 4


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccE-EEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYM-IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~-llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ..+.++..-.+++++|.+++-|.+... |++.+......|. |++ +||..|+|+...  +++...-       .+.+..
T Consensus        75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~-k~VFlLVGhKsDL~Sq--RqVt~EE-------aEklAa  144 (213)
T KOG0091|consen   75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPD-KVVFLLVGHKSDLQSQ--RQVTAEE-------AEKLAA  144 (213)
T ss_pred             HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCC-eeEEEEeccccchhhh--ccccHHH-------HHHHHH
Confidence            446678889999999999999998865 8888877777453 233 338899998865  5443211       223333


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      .|.-.+      +..|++++.|++|-++.+.+.+
T Consensus       145 ~hgM~F------VETSak~g~NVeEAF~mlaqeI  172 (213)
T KOG0091|consen  145 SHGMAF------VETSAKNGCNVEEAFDMLAQEI  172 (213)
T ss_pred             hcCceE------EEecccCCCcHHHHHHHHHHHH
Confidence            333111      2346667788888776664433

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.28  E-value=2.4e-11  Score=96.19  Aligned_cols=165  Identities=11%  Similarity=0.116  Sum_probs=96.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++..++|+|+||+|||||+++|+|...+ ...+..+.+.........     .........+.+.|.+.. ....++..
T Consensus        37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~  115 (260)
T PRK10744         37 AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIA  115 (260)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHh
Confidence            46789999999999999999999998531 000111222222111100     000112334556565543 11111110


Q ss_pred             ---------------HHHHHHHhhccCCccE-E-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           91 ---------------KEIVKCLGMAKDGIHA-F-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        91 ---------------~~~~~~~~~~~~~~~~-i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                                     +.+...+...  +... + -..-.....+|.|+++++.++++++.+|.   ++|   |++.+|..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~---lllLDEPt~~LD~~  190 (260)
T PRK10744        116 FGVRLFEKLSRAEMDERVEWALTKA--ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPE---VLLLDEPCSALDPI  190 (260)
T ss_pred             hhHhhcCCCCHHHHHHHHHHHHHHc--CCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCC---EEEEcCCCccCCHH
Confidence                           0111111111  0000 0 00111124799999999999999998884   666   99999988


Q ss_pred             ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ..  ..+.+.+.+..        +|....+...|++.+++.++.+..
T Consensus       191 ~~--~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  235 (260)
T PRK10744        191 ST--GRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE  235 (260)
T ss_pred             HH--HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            77  77777776542        789999888999999998887653

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.28  E-value=1.1e-11  Score=97.89  Aligned_cols=160  Identities=13%  Similarity=0.044  Sum_probs=92.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV---   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~---   89 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.+.+....+..+..   
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  100 (258)
T PRK13548         25 LRPGEVVAILGPNGAGKSTLLRALSGELSPDSG----EVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMG  100 (258)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----EEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhh
Confidence            346679999999999999999999998765444    22221111000   00001112333444332211111111   


Q ss_pred             -----------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC------ccccccEEE---EEeCCCC
Q 027090           90 -----------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG------KNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        90 -----------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~------~~~~~~~ll---v~~~~D~  149 (228)
                                 .+....++...  +...  +.-.....+|.|+++++.++++++.      +|   ++++   |++.+|.
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p---~lllLDEPt~~LD~  173 (258)
T PRK13548        101 RAPHGLSRAEDDALVAAALAQV--DLAH--LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP---RWLLLDEPTSALDL  173 (258)
T ss_pred             hcccCCCcHHHHHHHHHHHHHc--CCHh--HhcCCcccCCHHHHHHHHHHHHHhcccccCCCC---CEEEEeCCcccCCH
Confidence                       01111111111  1110  1111125799999999999999983      45   3555   8999998


Q ss_pred             CccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          150 LEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ...  ..+.+.+.+..          +|+...+...|+.++++.++.+.
T Consensus       174 ~~~--~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  220 (258)
T PRK13548        174 AHQ--HHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV  220 (258)
T ss_pred             HHH--HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE
Confidence            876  67766665431          68999998899999988888754

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=1.3e-11  Score=98.65  Aligned_cols=158  Identities=16%  Similarity=0.143  Sum_probs=92.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCcHHH---
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGSEFV---   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~~~~---   89 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.|- .....+..+++   
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~  106 (279)
T PRK13650         31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG----QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG  106 (279)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhh
Confidence            46789999999999999999999998765444    22222211100   000111223444431 11111111111   


Q ss_pred             -----------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           90 -----------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        90 -----------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                                 .+.....+...  +...  +.-.....+|+|+++++.++++++.+|.   ++|   |++.+|....  .
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGq~qrv~lAral~~~p~---lLlLDEPt~~LD~~~~--~  177 (279)
T PRK13650        107 LENKGIPHEEMKERVNEALELV--GMQD--FKEREPARLSGGQKQRVAIAGAVAMRPK---IIILDEATSMLDPEGR--L  177 (279)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHC--CCHh--HhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH--H
Confidence                       01111111111  1111  1111124799999999999999998884   655   9999998876  7


Q ss_pred             hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+.+....          +|.+..+ ..|+.++++.++.+.
T Consensus       178 ~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~  219 (279)
T PRK13650        178 ELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVE  219 (279)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence            7766655431          6888887 579988888888754

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.28  E-value=1.9e-11  Score=96.38  Aligned_cols=165  Identities=13%  Similarity=0.114  Sum_probs=96.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||+|||||+++|+|.... ......+.+.........     .........+.+.|.++.. +..++.
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl  107 (253)
T PRK14242         29 FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENV  107 (253)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcC-cHHHHH
Confidence            356679999999999999999999997420 000111222222111100     0001122345555555432 222211


Q ss_pred             HH---------------HHHHHHhhccCCccE-EE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           90 GK---------------EIVKCLGMAKDGIHA-FL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        90 ~~---------------~~~~~~~~~~~~~~~-il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      .-               .+...+...  +... +. ..-.....+|.|+++++.++++++.+|   ++++   |++.+|.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p---~llllDEPt~~LD~  182 (253)
T PRK14242        108 AYGLRVNGVKDKAYLAERVERSLRHA--ALWDEVKDRLHESALGLSGGQQQRLCIARALAVEP---EVLLMDEPASALDP  182 (253)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHc--CCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCH
Confidence            00               000111100  1100 00 011112579999999999999998888   3665   9999998


Q ss_pred             CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ...  ..+.+.+.+..        +|+...+.+.|+..+++.++.+.
T Consensus       183 ~~~--~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~  227 (253)
T PRK14242        183 IAT--QKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI  227 (253)
T ss_pred             HHH--HHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence            877  77777776543        78999999999999988888764

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.28  E-value=9.9e-12  Score=101.27  Aligned_cols=152  Identities=16%  Similarity=0.136  Sum_probs=93.2

Q ss_pred             EEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHH-----------
Q 027090           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGK-----------   91 (228)
Q Consensus        24 l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~-----------   91 (228)
                      |+|+||||||||+++|+|...+.+|    .+........ ..........+.+.+.++...+..+++.-           
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G----~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~   76 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSG----SIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE   76 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCce----EEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH
Confidence            5899999999999999999775544    2222211110 00011122345666665544332222110           


Q ss_pred             ---HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC
Q 027090           92 ---EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC  165 (228)
Q Consensus        92 ---~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~  165 (228)
                         .+...+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|....  ..+.+.+.+..
T Consensus        77 ~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGq~qRvalaraL~~~p~---lllLDEP~s~LD~~~~--~~l~~~l~~l~  147 (325)
T TIGR01187        77 IKPRVLEALRLV--QLEE--FADRKPHQLSGGQQQRVALARALVFKPK---ILLLDEPLSALDKKLR--DQMQLELKTIQ  147 (325)
T ss_pred             HHHHHHHHHHHc--CCcc--hhcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCccCCHHHH--HHHHHHHHHHH
Confidence               011111110  1111  1111225799999999999999998884   665   9999998877  77776665431


Q ss_pred             ----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          166 ----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       166 ----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                                +|++.++...|++.+++.++.+.
T Consensus       148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~  180 (325)
T TIGR01187       148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIA  180 (325)
T ss_pred             HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence                      79999999999999999888764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3.4e-11  Score=94.85  Aligned_cols=167  Identities=13%  Similarity=0.089  Sum_probs=97.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||||||||+++|+|...+ ......+.+.........     .........+.+.+.+....+..+++
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl  106 (252)
T PRK14256         27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV  106 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHH
Confidence            356779999999999999999999997531 000011222222111100     00111223455656555432222221


Q ss_pred             H---------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           90 G---------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        90 ~---------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      .               +.....+...  +.+..+  ..-.....+|.|+++++.++++++.+|.   +++   |++.+|.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEP~~gLD~  181 (252)
T PRK14256        107 IAGYKLNGRVNRSEADEIVESSLKRV--ALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPE---VILMDEPASALDP  181 (252)
T ss_pred             HhHHHhcCCCCHHHHHHHHHHHHHHc--CCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCH
Confidence            1               0011111110  110000  0011124799999999999999988884   555   9999998


Q ss_pred             CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ...  ..+...+++..        +|....+.+.|++.+++.++.+..
T Consensus       182 ~~~--~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14256        182 IST--LKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE  227 (252)
T ss_pred             HHH--HHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence            877  77777776553        789999999999998888887643

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=4.1e-11  Score=104.07  Aligned_cols=68  Identities=15%  Similarity=0.068  Sum_probs=58.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      ..+|+|+++++.++.+++.+|.   ++|   |++++|....  .++.+.+.+..      +|++..+.+.|++.+++.++
T Consensus       154 ~~LSgGq~qrv~lA~aL~~~p~---lLlLDEPt~~LD~~~~--~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g  228 (530)
T PRK15064        154 SEVAPGWKLRVLLAQALFSNPD---ILLLDEPTNNLDINTI--RWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYG  228 (530)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCC---EEEEcCCCcccCHHHH--HHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCC
Confidence            4799999999999999988873   555   9999999988  88988887643      89999999999999999888


Q ss_pred             CC
Q 027090          186 KT  187 (228)
Q Consensus       186 ~~  187 (228)
                      .+
T Consensus       229 ~i  230 (530)
T PRK15064        229 EL  230 (530)
T ss_pred             EE
Confidence            75

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.27  E-value=3.3e-11  Score=88.98  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=63.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE-eeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...|+|+|++|+|||+|+..|.....+.+- .+  +  ..+.. .........+.++|+||.....       ..+...+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS--~--e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~   70 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTV-TS--M--ENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL   70 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B------S--SEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCee-cc--c--cCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence            468999999999999999999876432111 11  1  11111 1111245569999999965432       2222221


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH----HHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE----ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~----~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      . ....+.+|+||+|.. .....-    .....++...-..+...|++|+.||.|....
T Consensus        71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            1 233579999999986 222211    1223333333211222389999999998764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=9e-12  Score=108.13  Aligned_cols=153  Identities=10%  Similarity=0.025  Sum_probs=94.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCC--CCCCCCCcHHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG--LFDLSAGSEFVG---   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG--~~~~~~~~~~~~---   90 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .+.....        ....++.+.|.  +.......+...   
T Consensus       342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G----~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~  409 (530)
T PRK15064        342 LEAGERLAIIGENGVGKTTLLRTLVGELEPDSG----TVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWR  409 (530)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhc
Confidence            346679999999999999999999998764444    2211110        01112222221  111111111110   


Q ss_pred             ------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090           91 ------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        91 ------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~  161 (228)
                            +.+...+...  +... -..-.....+|+|+++++.++++++.++   +++|   |++.+|....  ..+.+.+
T Consensus       410 ~~~~~~~~~~~~l~~~--~l~~-~~~~~~~~~LSgGq~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~l~~~l  481 (530)
T PRK15064        410 QEGDDEQAVRGTLGRL--LFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQKP---NVLVMDEPTNHMDMESI--ESLNMAL  481 (530)
T ss_pred             cCCccHHHHHHHHHHc--CCCh-hHhcCcccccCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHHHH
Confidence                  0111111111  0000 0011112589999999999999998887   4666   9999999887  8888888


Q ss_pred             hccC------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          162 GHEC------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       162 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.      +|+...+...|+..+++.++.+.
T Consensus       482 ~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~  514 (530)
T PRK15064        482 EKYEGTLIFVSHDREFVSSLATRIIEITPDGVV  514 (530)
T ss_pred             HHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence            8754      89999999999999988887754

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.27  E-value=5.1e-11  Score=91.10  Aligned_cols=149  Identities=17%  Similarity=0.155  Sum_probs=91.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV----   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~----   89 (228)
                      .++..++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.|.+... ...++.    
T Consensus        32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~  106 (207)
T cd03369          32 KAGEKIGIVGRTGAGKSTLILALFRFLEAEEG----KIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD  106 (207)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccCCCCC----eEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC
Confidence            56789999999999999999999998764444    22222211100   0011223345555555432 111111    


Q ss_pred             ---HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090           90 ---GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~  163 (228)
                         ..++...+       +    .-.....+|.++++++.++++++.+|.   +++   |++.+|....  ..+.+.+.+
T Consensus       107 ~~~~~~~~~~l-------~----~~~~~~~LS~G~~qrv~laral~~~p~---llllDEP~~~LD~~~~--~~l~~~l~~  170 (207)
T cd03369         107 EYSDEEIYGAL-------R----VSEGGLNLSQGQRQLLCLARALLKRPR---VLVLDEATASIDYATD--ALIQKTIRE  170 (207)
T ss_pred             CCCHHHHHHHh-------h----ccCCCCcCCHHHHHHHHHHHHHhhCCC---EEEEeCCcccCCHHHH--HHHHHHHHH
Confidence               01111111       1    111225799999999999999988874   555   8899998877  777777765


Q ss_pred             cC--------CchHHHHHHhcCCeEEEeeCCC
Q 027090          164 EC--------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       164 ~~--------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                      ..        +|....+.. |+..+++.++.+
T Consensus       171 ~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i  201 (207)
T cd03369         171 EFTNSTILTIAHRLRTIID-YDKILVMDAGEV  201 (207)
T ss_pred             hcCCCEEEEEeCCHHHHhh-CCEEEEEECCEE
Confidence            43        677777754 877777777654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.27  E-value=2.8e-11  Score=97.23  Aligned_cols=159  Identities=14%  Similarity=0.112  Sum_probs=94.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--------eeeeCCcEEEEEeCCCC--CCCCCCc
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--------TVLKDGQVVNVIDTPGL--FDLSAGS   86 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--------~~~~~~~~~~~iDtpG~--~~~~~~~   86 (228)
                      .++.+++|+|+||||||||+++|+|...+.+|    .+........        .........++.+.|.+  ... ...
T Consensus        35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~-tv~  109 (289)
T PRK13645         35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISETG----QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIE  109 (289)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhh-HHH
Confidence            56679999999999999999999998765444    2222111100        00011122344555421  111 111


Q ss_pred             HHHH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           87 EFVG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        87 ~~~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      +.+.              +.+...+...  +... -+.-.....+|.|+++++.++++++.+|.   ++|   |++.+|.
T Consensus       110 enl~~~~~~~~~~~~~~~~~~~~ll~~~--~L~~-~~~~~~~~~LS~Gq~qrv~laral~~~p~---lLlLDEPt~~LD~  183 (289)
T PRK13645        110 KDIAFGPVNLGENKQEAYKKVPELLKLV--QLPE-DYVKRSPFELSGGQKRRVALAGIIAMDGN---TLVLDEPTGGLDP  183 (289)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCCh-hHhcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCcccCCH
Confidence            1110              0000111100  1100 00111125799999999999999998884   665   9999998


Q ss_pred             CccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          150 LEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ...  ..+.+.+.+.    .      +|...++.+.|+..+++.++.+.
T Consensus       184 ~~~--~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~  230 (289)
T PRK13645        184 KGE--EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI  230 (289)
T ss_pred             HHH--HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            877  7776655433    1      79999999999999999888754

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.27  E-value=2.6e-11  Score=94.49  Aligned_cols=160  Identities=18%  Similarity=0.186  Sum_probs=97.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHH----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGK----   91 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~----   91 (228)
                      .++.+++|+|+||+|||||+++|+|...+..|    .+......... .........+.+.+.+.......++..-    
T Consensus        23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G----~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~   98 (235)
T cd03299          23 ERGDYFVILGPTGSGKSVLLETIAGFIKPDSG----KILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKK   98 (235)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHH
Confidence            46679999999999999999999998765444    22221111000 0001122344555555543222222210    


Q ss_pred             ----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHH
Q 027090           92 ----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        92 ----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~  158 (228)
                                +...++...  +...  +.-.....+|.++++++.+++++..++.   +++   |++.+|....  ..+.
T Consensus        99 ~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEPt~gLD~~~~--~~l~  169 (235)
T cd03299          99 RKVDKKEIERKVLEIAEML--GIDH--LLNRKPETLSGGEQQRVAIARALVVNPK---ILLLDEPFSALDVRTK--EKLR  169 (235)
T ss_pred             cCCCHHHHHHHHHHHHHHc--CChh--HHhcCcccCCHHHHHHHHHHHHHHcCCC---EEEECCCcccCCHHHH--HHHH
Confidence                      011111110  1110  0111114799999999999999998884   555   9999999877  7777


Q ss_pred             HHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          159 DFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       159 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ..+....          +|...++...|+.++.+.++.+..
T Consensus       170 ~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~  210 (235)
T cd03299         170 EELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ  210 (235)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            7665431          689999888999998888887653

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.27  E-value=4.1e-11  Score=104.52  Aligned_cols=68  Identities=18%  Similarity=0.008  Sum_probs=59.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      ..+|+|+++++.++.+++.+|.   ++|   |+|++|....  .++.+.++...      +|+...+...|+.++++.++
T Consensus       162 ~~LSgGqkqrv~la~al~~~p~---vlLLDEPt~~LD~~~~--~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g  236 (556)
T PRK11819        162 TKLSGGERRRVALCRLLLEKPD---MLLLDEPTNHLDAESV--AWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRG  236 (556)
T ss_pred             hhcCHHHHHHHHHHHHHhCCCC---EEEEcCCCCcCChHHH--HHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence            5799999999999999998884   666   9999999888  88888888755      89999999999999888887


Q ss_pred             CC
Q 027090          186 KT  187 (228)
Q Consensus       186 ~~  187 (228)
                      .+
T Consensus       237 ~i  238 (556)
T PRK11819        237 RG  238 (556)
T ss_pred             EE
Confidence            64

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=3e-11  Score=94.86  Aligned_cols=162  Identities=15%  Similarity=0.128  Sum_probs=97.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc---ccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA---FKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~---~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||+|||||+++|+|...   +.+|    .++........   .........+.+.|.++.. ...+++
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G----~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~-tv~eni   99 (246)
T PRK14269         25 IEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG----LVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK-SIYENI   99 (246)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCce----EEEECCEecccCCHHHHhhhEEEEecCCccccc-cHHHHh
Confidence            34678999999999999999999999753   2222    22222111100   0001122345555554431 111111


Q ss_pred             H----------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           90 G----------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        90 ~----------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                      .                .++...+...  +.+..+  ..-.....+|.++++++.++++++.+|   ++++   |++.+|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~lllLDEP~~~LD  174 (246)
T PRK14269        100 SYAPKLHGMIKNKDEEEALVVDCLQKV--GLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP---KLLLLDEPTSALD  174 (246)
T ss_pred             hhHHhhcCcccChHHHHHHHHHHHHHc--CCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCC
Confidence            0                0111111111  110000  011112479999999999999999888   4666   999999


Q ss_pred             CCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          149 DLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ....  ..+.+.+.+..        +|....+...|+..+++.++.+..
T Consensus       175 ~~~~--~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~  221 (246)
T PRK14269        175 PISS--GVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE  221 (246)
T ss_pred             HHHH--HHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence            8877  77777776542        789999999999999998887653

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=3.2e-11  Score=95.22  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=98.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC--CCcceeeEeE---eeeeeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--SGVTKTCEMK---TTVLKDGQVVNVIDTPGLFDLSAGSEFVG-   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~--~~~t~~~~~~---~~~~~~~~~~~~iDtpG~~~~~~~~~~~~-   90 (228)
                      .++..++|+|+||+|||||++.|+|...+.+|...  +.........   ...........+.+.|.++...+..++.. 
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~  113 (257)
T PRK14246         34 PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY  113 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHH
Confidence            45679999999999999999999998765544211  1110000000   00001122234555565543322221110 


Q ss_pred             --------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           91 --------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        91 --------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                                    +....++...  +.+..+  ........+|.++++++.++++++.+|.   +++   |++.+|...
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~---llllDEPt~~LD~~~  188 (257)
T PRK14246        114 PLKSHGIKEKREIKKIVEECLRKV--GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPK---VLLMDEPTSMIDIVN  188 (257)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHc--CCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEcCCCccCCHHH
Confidence                          0001111111  111110  0111225799999999999999998884   555   999999987


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.+.+..        +|....+...|++.+++.++.+..
T Consensus       189 ~--~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~  232 (257)
T PRK14246        189 S--QAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE  232 (257)
T ss_pred             H--HHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            7  78887776543        788888889999888888877543

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.26  E-value=9.5e-12  Score=109.80  Aligned_cols=165  Identities=21%  Similarity=0.189  Sum_probs=100.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCc----
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGS----   86 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~----   86 (228)
                      -.-+++.+|+|+|++|||||||.+.|+|...+..|    .+..+......   ....+....+-+.+-++...-.+    
T Consensus       494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G----~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l  569 (709)
T COG2274         494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG----RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIAL  569 (709)
T ss_pred             EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhc
Confidence            34567889999999999999999999999885555    33332221111   00111112222323222211000    


Q ss_pred             ---HHHHHHHHHHHhhccCCccEEEE---------EEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           87 ---EFVGKEIVKCLGMAKDGIHAFLV---------VFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        87 ---~~~~~~~~~~~~~~~~~~~~il~---------v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                         +...+++..+...+  ++|.++.         +-..+..+|+|++|++.+++++..+|   ++++   +++.+|...
T Consensus       570 ~~p~~~~e~i~~A~~~a--g~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P---~ILlLDEaTSaLD~~s  644 (709)
T COG2274         570 GNPEATDEEIIEAAQLA--GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP---KILLLDEATSALDPET  644 (709)
T ss_pred             CCCCCCHHHHHHHHHHh--CcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---CEEEEeCcccccCHhH
Confidence               00113333333222  2232222         22334579999999999999999988   4666   889999887


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      +  +.+.+.+.+..        +|.. ..++.|++++++..|++...
T Consensus       645 E--~~I~~~L~~~~~~~T~I~IaHRl-~ti~~adrIiVl~~Gkiv~~  688 (709)
T COG2274         645 E--AIILQNLLQILQGRTVIIIAHRL-STIRSADRIIVLDQGKIVEQ  688 (709)
T ss_pred             H--HHHHHHHHHHhcCCeEEEEEccc-hHhhhccEEEEccCCceecc
Confidence            7  77777666644        4444 45578999999999988765

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.26  E-value=2.4e-11  Score=96.96  Aligned_cols=159  Identities=17%  Similarity=0.086  Sum_probs=94.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCcHHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGSEFVG-   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~~~~~-   90 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.|. ........+++. 
T Consensus        30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G----~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~  105 (277)
T PRK13642         30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG----KVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAF  105 (277)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC----EEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHh
Confidence            356789999999999999999999999875444    22222111100   001111234444442 121111111110 


Q ss_pred             -------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           91 -------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        91 -------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                                   +.+..++...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|....  
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~lAraL~~~p~---llllDEPt~~LD~~~~--  176 (277)
T PRK13642        106 GMENQGIPREEMIKRVDEALLAV--NMLD--FKTREPARLSGGQKQRVAVAGIIALRPE---IIILDESTSMLDPTGR--  176 (277)
T ss_pred             hHHHcCCCHHHHHHHHHHHHHHC--CCHh--HhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--
Confidence                         0011111110  1111  1111225799999999999999998884   665   9999998877  


Q ss_pred             hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..+.+.+.+..          +|.+..+. .|+..+++.++.+.
T Consensus       177 ~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~  219 (277)
T PRK13642        177 QEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII  219 (277)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence            77777665331          78888875 58888888888754

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.26  E-value=1.7e-11  Score=93.67  Aligned_cols=134  Identities=15%  Similarity=0.137  Sum_probs=77.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-ee------eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TV------LKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      .++.+++|+|+||+|||||+++|+|...+.+|    .+........ ..      ........+.+.|.+....+..+..
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~   97 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG----QVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL   97 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHH
Confidence            45679999999999999999999998765444    2222211100 00      0011223445555554432222211


Q ss_pred             H--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 G--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 ~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      .              +.+...+...  +...  +.-.....+|.|+++++.++++++.+|.   +++   |++.+|....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~lS~G~~qr~~laral~~~p~---llllDEPt~~LD~~~~  170 (206)
T TIGR03608        98 DLGLKYKKLSKKEKREKKKEALEKV--GLNL--KLKQKIYELSGGEQQRVALARAILKDPP---LILADEPTGSLDPKNR  170 (206)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHc--Cchh--hhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcCCCCHHHH
Confidence            0              0111111111  1110  1111124799999999999999998884   555   9999998776


Q ss_pred             chhhHHHHhhc
Q 027090          153 HEKTLEDFLGH  163 (228)
Q Consensus       153 ~~~~~~~~~~~  163 (228)
                        ..+.+.+++
T Consensus       171 --~~l~~~l~~  179 (206)
T TIGR03608       171 --DEVLDLLLE  179 (206)
T ss_pred             --HHHHHHHHH
Confidence              777776665

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=2.1e-11  Score=96.87  Aligned_cols=161  Identities=14%  Similarity=0.133  Sum_probs=96.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCc
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA-----FKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGS   86 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~-----~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~   86 (228)
                      .++..++|+|+||+|||||+++|+|...     +.+|    .+.........     ........++.+.|.++.. ...
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G----~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~  119 (268)
T PRK14248         45 EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG----EILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIY  119 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCce----EEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHH
Confidence            4677999999999999999999999642     1222    22221111100     0011123455566655432 211


Q ss_pred             HHHHH---------------HHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeC
Q 027090           87 EFVGK---------------EIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTG  146 (228)
Q Consensus        87 ~~~~~---------------~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~  146 (228)
                      ++...               .....+...  +....+  ..-.....+|.|+++++.++++++.+|.   +++   |++.
T Consensus       120 enl~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~---lllLDEPt~~  194 (268)
T PRK14248        120 NNITHALKYAGERRKSVLDEIVEESLTKA--ALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPA---VLLLDEPASA  194 (268)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHc--CCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCC---EEEEcCCCcc
Confidence            11100               000011100  000000  0011125799999999999999998884   555   9999


Q ss_pred             CCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          147 GDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +|....  ..+.+.+.+..        +|++..+.+.|++.+++.++.+..
T Consensus       195 LD~~~~--~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~  243 (268)
T PRK14248        195 LDPISN--AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE  243 (268)
T ss_pred             cCHHHH--HHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence            998877  77777776542        689999999999999988887643

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.26  E-value=1.7e-11  Score=96.73  Aligned_cols=167  Identities=16%  Similarity=0.190  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCC-CCCCCCC-cHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPG-LFDLSAG-SEFV---   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG-~~~~~~~-~~~~---   89 (228)
                      -.++..++|+|+||+|||||++.|+|...+......+.+......... ........++.+.|. .+..... .+..   
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~  105 (254)
T PRK10418         26 LQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARET  105 (254)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHH
Confidence            346679999999999999999999998764110012222221111100 001111234455443 1111111 0000   


Q ss_pred             ---------HHHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           90 ---------GKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        90 ---------~~~~~~~~~~~~~~~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                               ...+...+...  +..... +.-.....+|.|+++++.++++++.+|.   ++|   |++.+|....  +.
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~---lLlLDEPt~~LD~~~~--~~  178 (254)
T PRK10418        106 CLALGKPADDATLTAALEAV--GLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP---FIIADEPTTDLDVVAQ--AR  178 (254)
T ss_pred             HHHcCCChHHHHHHHHHHHc--CCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC---EEEEeCCCcccCHHHH--HH
Confidence                     00111111111  111000 0111124799999999999999998884   555   8899998766  66


Q ss_pred             HHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          157 LEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       157 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +.+.+....          +|...++...|+..+++.++.+..
T Consensus       179 l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~  221 (254)
T PRK10418        179 ILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE  221 (254)
T ss_pred             HHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            666655431          789999989999988888887643

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.26  E-value=3.2e-11  Score=94.87  Aligned_cols=167  Identities=11%  Similarity=0.086  Sum_probs=96.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++..++|+|+||+|||||+++|+|...+ ......+.+.........     .........+.+.|.+.. ....++..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~  105 (250)
T PRK14240         27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVA  105 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHH
Confidence            46779999999999999999999996431 000011222222111100     001112245556666554 22222111


Q ss_pred             HH-----------HHHHHhhccCCccE---E-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           91 KE-----------IVKCLGMAKDGIHA---F-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        91 ~~-----------~~~~~~~~~~~~~~---i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      ..           ............+.   + -..-.....+|.++++++.++++++.+|.   +++   |++.+|....
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEP~~~LD~~~~  182 (250)
T PRK14240        106 YGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPE---VLLMDEPTSALDPIST  182 (250)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH
Confidence            00           00000000001110   0 00111225799999999999999998884   555   9999999877


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                        ..+.+.+.+..        +|+...+.+.|++.+++.++.+..
T Consensus       183 --~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~  225 (250)
T PRK14240        183 --LKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE  225 (250)
T ss_pred             --HHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence              77777776543        689988889999988888887653

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.26  E-value=2.5e-11  Score=96.34  Aligned_cols=165  Identities=13%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||+|||||+++|+|...+.. .+..+.++........     .........+.+.|.+... ...+.+
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl  120 (267)
T PRK14235         42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENV  120 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHH
Confidence            35678999999999999999999999764210 0112223222211100     0011122355666665542 222221


Q ss_pred             H----------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           90 G----------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        90 ~----------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                      .                ..+...+...  ++...+  ..-.....+|.|+++++.++++++.+|.   +++   |++.+|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~---lllLDEPt~~LD  195 (267)
T PRK14235        121 AYGPRIHGLARSKAELDEIVETSLRKA--GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPE---VILMDEPCSALD  195 (267)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHc--CCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCCcCCC
Confidence            0                0000111100  110000  0011124799999999999999998884   555   999999


Q ss_pred             CCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          149 DLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ....  ..+.+.++...        +|....+...|+..+++.++.+.
T Consensus       196 ~~~~--~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~  241 (267)
T PRK14235        196 PIAT--AKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV  241 (267)
T ss_pred             HHHH--HHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence            8877  77777776543        78999988999988888888764

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=8.7e-12  Score=101.56  Aligned_cols=170  Identities=12%  Similarity=0.102  Sum_probs=98.5

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-------eCCcEEEEEeCCC--CCCCCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-------KDGQVVNVIDTPG--LFDLSA   84 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~~~iDtpG--~~~~~~   84 (228)
                      ..-.++..++|+|+||||||||+++|+|...+......+.+...........       .......+.+-|.  +.....
T Consensus        28 l~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~  107 (326)
T PRK11022         28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT  107 (326)
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence            3445677999999999999999999999864211112222222221110000       0011234555552  221111


Q ss_pred             CcHHHH---------------HHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090           85 GSEFVG---------------KEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT  145 (228)
Q Consensus        85 ~~~~~~---------------~~~~~~~~~~~~~~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~  145 (228)
                      ..+...               +.....+...  +.+... ..-.....+|+|+++++.++++++.+|.   ++|   |++
T Consensus       108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~--gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~---llilDEPts  182 (326)
T PRK11022        108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQV--GIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPK---LLIADEPTT  182 (326)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC--CCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCC---EEEEeCCCC
Confidence            111110               0111111111  111000 0111225799999999999999998884   666   899


Q ss_pred             CCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          146 GGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       146 ~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      .+|....  ..+.+.+.++.          +|++..+.+.|+.++++..|.+...
T Consensus       183 ~LD~~~~--~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~  235 (326)
T PRK11022        183 ALDVTIQ--AQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET  235 (326)
T ss_pred             CCCHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9998877  77777666542          7999999999999999998876543

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=8.8e-12  Score=101.77  Aligned_cols=70  Identities=14%  Similarity=0.124  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCV  181 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~  181 (228)
                      ..+|+|+++++.++.+++.+|.   ++|   |++.+|....  .++.+.++++.          +|++..+...|+.+++
T Consensus       157 ~~LSgG~~QRv~iArAL~~~P~---llilDEPts~LD~~~~--~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v  231 (330)
T PRK15093        157 YELTEGECQKVMIAIALANQPR---LLIADEPTNAMEPTTQ--AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV  231 (330)
T ss_pred             hhCCHHHHHHHHHHHHHHCCCC---EEEEeCCCCcCCHHHH--HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence            4799999999999999998884   555   9999998877  77777766532          7999999999999999


Q ss_pred             EeeCCCcc
Q 027090          182 LFDNKTKD  189 (228)
Q Consensus       182 ~~~~~~~~  189 (228)
                      +..|.+..
T Consensus       232 m~~G~ive  239 (330)
T PRK15093        232 LYCGQTVE  239 (330)
T ss_pred             EECCEEEE
Confidence            98887643

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.25  E-value=3.5e-11  Score=94.79  Aligned_cols=167  Identities=15%  Similarity=0.110  Sum_probs=96.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~--~~~~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      -.++..++|+|+||+|||||+++|+|...  +. ....+.+........   .  .........+.+.|.++. ....++
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en  105 (252)
T PRK14239         28 FYPNEITALIGPSGSGKSTLLRSINRMNDLNPE-VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYEN  105 (252)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcccccCCC-CCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHH
Confidence            34678999999999999999999998632  21 001122222211110   0  001122344556666554 222222


Q ss_pred             HHHH-----------HHHHHhhccCCccEE--E--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           89 VGKE-----------IVKCLGMAKDGIHAF--L--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        89 ~~~~-----------~~~~~~~~~~~~~~i--l--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      +.-.           ...............  +  ..-.....+|.|+++++.++++++.+|   +++|   |++.+|..
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEPt~~LD~~  182 (252)
T PRK14239        106 VVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSP---KIILLDEPTSALDPI  182 (252)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCccccCHH
Confidence            1100           000000000001100  0  011122579999999999999998888   3666   99999988


Q ss_pred             ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ..  ..+.+.+.+..        +|++..+.+.|++.+++.++.+..
T Consensus       183 ~~--~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14239        183 SA--GKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE  227 (252)
T ss_pred             HH--HHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence            77  77777776542        789999999999999998887643

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=3.1e-11  Score=95.47  Aligned_cols=164  Identities=10%  Similarity=0.069  Sum_probs=95.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      +++..++|+|+||+|||||+++|+|...+ ......+.++........     ........++.+-|.++.. ...+...
T Consensus        36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~  114 (259)
T PRK14274         36 PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVA  114 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHH
Confidence            46779999999999999999999997542 000011222222211100     0001122344455554432 1111110


Q ss_pred             ---------------HHHHHHHhhccCCccE-EE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           91 ---------------KEIVKCLGMAKDGIHA-FL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        91 ---------------~~~~~~~~~~~~~~~~-il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                                     +.....+...  +... +. ..-.....+|.|+++++.++++++.+|.   +++   |++.+|..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~---llllDEPt~~LD~~  189 (259)
T PRK14274        115 YGPRIHGTKNKKKLQEIVEKSLKDV--ALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPD---VLLMDEPTSALDPV  189 (259)
T ss_pred             hHHHhcCCCCHHHHHHHHHHHHHHc--CCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHH
Confidence                           0000111110  1100 00 0111224799999999999999998884   666   99999998


Q ss_pred             ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..  ..+.+.+.+..        +|....+.+.|++.+++.++.+.
T Consensus       190 ~~--~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~  233 (259)
T PRK14274        190 ST--RKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV  233 (259)
T ss_pred             HH--HHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence            77  77777776653        68999988999998888888764

>PRK13351 elongation factor G; Reviewed

Probab=99.25  E-value=1.3e-10  Score=103.64  Aligned_cols=118  Identities=19%  Similarity=0.233  Sum_probs=76.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc---ccccCC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA---FKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~---~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   81 (228)
                      ..++|+|+|+.|+|||||+++|+....   ......             .+..|........ .+....+.++||||..+
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~-~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSC-DWDNHRINLIDTPGHID   85 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEE-EECCEEEEEEECCCcHH
Confidence            457999999999999999999974311   000000             1233433333332 25677899999999543


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .       ..+..    .....+|++++++++..+.+......+..+...   .  .|+++++||+|....
T Consensus        86 f-------~~~~~----~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~~~  140 (687)
T PRK13351         86 F-------TGEVE----RSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY---G--IPRLIFINKMDRVGA  140 (687)
T ss_pred             H-------HHHHH----HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCCCCCC
Confidence            1       12222    333466999999999877777766666554332   2  278999999998753

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=3.2e-11  Score=95.12  Aligned_cols=169  Identities=10%  Similarity=0.071  Sum_probs=97.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .-.++.+++|+|+||+|||||+++|+|...+..+ ...+.+.........     .........+.+.|.+.. .+..++
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en  107 (254)
T PRK14273         29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDN  107 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHH
Confidence            3456789999999999999999999998653210 011222221111100     001112234555555542 221111


Q ss_pred             HHHH-----------HHHHHhhccCCccEE--E--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           89 VGKE-----------IVKCLGMAKDGIHAF--L--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        89 ~~~~-----------~~~~~~~~~~~~~~i--l--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      +.-.           ............+..  +  ..-.....+|+|+++++.++++++.+|.   ++|   |++.+|..
T Consensus       108 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~---lllLDEPt~~LD~~  184 (254)
T PRK14273        108 ISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPN---VILMDEPTSALDPI  184 (254)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCCcccCHH
Confidence            1000           000000000000100  0  0011124799999999999999998884   555   89999988


Q ss_pred             ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ..  ..+.+.+.+..        +|....+...|++.+++.++.+..
T Consensus       185 ~~--~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~  229 (254)
T PRK14273        185 ST--GKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE  229 (254)
T ss_pred             HH--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            77  77777776653        789999888999988888887653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.25  E-value=3.6e-11  Score=95.04  Aligned_cols=69  Identities=17%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCV  181 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~  181 (228)
                      ..+|.|+++++.++++++.+|.   +++   |++.+|....  .++.+.++..    .      +|....+...|+..++
T Consensus       150 ~~LS~Gq~qrl~laral~~~p~---llllDEPt~~LD~~~~--~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~  224 (258)
T PRK11701        150 TTFSGGMQQRLQIARNLVTHPR---LVFMDEPTGGLDVSVQ--ARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV  224 (258)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCCHHHH--HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence            5799999999999999998884   666   9999998876  7777765432    1      7899999889999999


Q ss_pred             EeeCCCc
Q 027090          182 LFDNKTK  188 (228)
Q Consensus       182 ~~~~~~~  188 (228)
                      +.++.+.
T Consensus       225 l~~g~i~  231 (258)
T PRK11701        225 MKQGRVV  231 (258)
T ss_pred             EECCEEE
Confidence            9888764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.25  E-value=6.3e-11  Score=103.31  Aligned_cols=68  Identities=16%  Similarity=-0.019  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      ..+|+|+++++.++.+++.+|.   ++|   |+|++|....  .++.+.+.+..      +|+...+...|+..+++.++
T Consensus       160 ~~LSgGqkqrv~la~al~~~p~---lLLLDEPt~~LD~~~~--~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g  234 (552)
T TIGR03719       160 TKLSGGERRRVALCRLLLSKPD---MLLLDEPTNHLDAESV--AWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRG  234 (552)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCC---EEEEcCCCCCCChHHH--HHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence            4799999999999999988883   666   9999999988  88988888754      89999999999988888877


Q ss_pred             CC
Q 027090          186 KT  187 (228)
Q Consensus       186 ~~  187 (228)
                      .+
T Consensus       235 ~i  236 (552)
T TIGR03719       235 RG  236 (552)
T ss_pred             EE
Confidence            64

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.25  E-value=1.8e-11  Score=106.06  Aligned_cols=163  Identities=14%  Similarity=0.154  Sum_probs=98.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee-eE----eEeee-----eeCCcEEEEEeCCCCCCCCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CE----MKTTV-----LKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~----~~~~~-----~~~~~~~~~iDtpG~~~~~~   84 (228)
                      .-.++.+++|+|+||||||||+++|+|...+.+|    .+... ..    .....     .......++.+.|.+.....
T Consensus       306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G----~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t  381 (520)
T TIGR03269       306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG----EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRT  381 (520)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCc
Confidence            3456789999999999999999999998764444    22221 00    00000     00111234455555444322


Q ss_pred             CcHHHHH-------------HHHHHHhhccCCccEE---EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEe
Q 027090           85 GSEFVGK-------------EIVKCLGMAKDGIHAF---LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFT  145 (228)
Q Consensus        85 ~~~~~~~-------------~~~~~~~~~~~~~~~i---l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~  145 (228)
                      ..+.+..             .....+...  +....   -+.-.....+|+|+++++.+++++..+|   +++|   |++
T Consensus       382 v~e~l~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p---~lLllDEPt~  456 (520)
T TIGR03269       382 VLDNLTEAIGLELPDELARMKAVITLKMV--GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEP---RIVILDEPTG  456 (520)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCcc
Confidence            2222210             011111111  11100   0011112479999999999999998887   4666   999


Q ss_pred             CCCCCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          146 GGDDLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       146 ~~D~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+|....  +.+.+.+.+.    .      +|++..+...|+..+++.++.+.
T Consensus       457 ~LD~~~~--~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~  507 (520)
T TIGR03269       457 TMDPITK--VDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV  507 (520)
T ss_pred             cCCHHHH--HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            9999877  7777777432    1      89999999999999999888754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=7.7e-11  Score=93.24  Aligned_cols=160  Identities=11%  Similarity=0.078  Sum_probs=94.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee---e--eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT---V--LKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~---~--~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -+++.+++|+|+||+|||||+++|+|...+..+ ...+.++........   .  ........+.+.|.++. ....++.
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl  109 (261)
T PRK14263         31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS-MSIFDNV  109 (261)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcccc-ccHHHHH
Confidence            356779999999999999999999998653111 112233322221100   0  01122344555555542 2222221


Q ss_pred             H-------------HHHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           90 G-------------KEIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        90 ~-------------~~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      .             ..+...+...  +....+  ..-.....+|.++++++.++++++.+|.   +++   |++.+|...
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~---llllDEPtsgLD~~~  184 (261)
T PRK14263        110 AFGLRLNRYKGDLGDRVKHALQGA--ALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPE---VLLLDEPCSALDPIA  184 (261)
T ss_pred             HHHHhhcCchHHHHHHHHHHHHHc--CCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCCccCCHHH
Confidence            1             0111111111  110000  0011124699999999999999998884   665   999999887


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF  183 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  183 (228)
                      .  .++.+.+++..        +|.+..+.+.|++++++.
T Consensus       185 ~--~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~  222 (261)
T PRK14263        185 T--RRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS  222 (261)
T ss_pred             H--HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence            7  77777777653        789999999999888885

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.24  E-value=2.3e-11  Score=92.61  Aligned_cols=136  Identities=13%  Similarity=0.078  Sum_probs=76.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFV---   89 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~---   89 (228)
                      .-.++.+++|+|+||+|||||++.|+|...+.+|    .+.........  .........+.+.|++.......+..   
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~   97 (201)
T cd03231          22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG----RVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFW   97 (201)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhh
Confidence            3456789999999999999999999998765444    22221111100  00111223344445443322211111   


Q ss_pred             -----HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090           90 -----GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        90 -----~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~  161 (228)
                           .+.+...+...  +...  +.-.....+|.++++++.+++++..+|.   +++   |++.+|....  ..+.+.+
T Consensus        98 ~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEPt~~LD~~~~--~~l~~~l  168 (201)
T cd03231          98 HADHSDEQVEEALARV--GLNG--FEDRPVAQLSAGQQRRVALARLLLSGRP---LWILDEPTTALDKAGV--ARFAEAM  168 (201)
T ss_pred             cccccHHHHHHHHHHc--CChh--hhcCchhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCCCCCHHHH--HHHHHHH
Confidence                 01111111111  1110  1111124799999999999999998884   555   8899998776  7777666


Q ss_pred             hc
Q 027090          162 GH  163 (228)
Q Consensus       162 ~~  163 (228)
                      .+
T Consensus       169 ~~  170 (201)
T cd03231         169 AG  170 (201)
T ss_pred             HH
Confidence            54

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=3.6e-11  Score=98.00  Aligned_cols=167  Identities=11%  Similarity=0.136  Sum_probs=100.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++.+++|+|++|||||||+++|+|...+..+ +..+.+..+.....   .  .........+.+.|.++.. +..+++
T Consensus       105 I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~-ti~eNi  183 (329)
T PRK14257        105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEM-SIFDNV  183 (329)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCC-cHHHHH
Confidence            356679999999999999999999998642110 11222222221110   0  0112223445566665532 111111


Q ss_pred             H----------HH-----HHHHHhhcc--CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           90 G----------KE-----IVKCLGMAK--DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        90 ~----------~~-----~~~~~~~~~--~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      .          ++     ....+....  ..++  -.+-.....+|+|+++++.++++++.++.   +++   |++.+|.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~--~~~~~~~~~LSgGqkqRl~LARAl~~~p~---IlLLDEPts~LD~  258 (329)
T PRK14257        184 AYGPRNNGINDRKILEKIVEKSLKSAALWDEVK--DDLDKAGNALSGGQQQRLCIARAIALEPE---VLLMDEPTSALDP  258 (329)
T ss_pred             HhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh--hhhhCCcccCCHHHHHHHHHHHHHHhCCC---EEEEeCCcccCCH
Confidence            1          00     011111110  0000  01112235799999999999999998884   666   8999998


Q ss_pred             CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ...  ..+.+.+....        +|.+..+.+.|++++++.+|.+...
T Consensus       259 ~~~--~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~  305 (329)
T PRK14257        259 IAT--AKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA  305 (329)
T ss_pred             HHH--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            766  77777776543        7899999999999999999876543

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=4.9e-11  Score=94.82  Aligned_cols=65  Identities=8%  Similarity=0.088  Sum_probs=54.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF  183 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  183 (228)
                      ..+|.++++++.++++++.+|.   +++   |++.+|....  ..+.+.+++..        +|++..+...|++.+++.
T Consensus       153 ~~LS~G~~qrl~laral~~~p~---lllLDEPt~gLD~~~~--~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~  227 (269)
T PRK14259        153 YSLSGGQQQRLCIARTIAIEPE---VILMDEPCSALDPIST--LKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFN  227 (269)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCC---EEEEcCCCccCCHHHH--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence            4799999999999999998884   655   9999998877  77777776543        789999999999888887


Q ss_pred             e
Q 027090          184 D  184 (228)
Q Consensus       184 ~  184 (228)
                      +
T Consensus       228 ~  228 (269)
T PRK14259        228 A  228 (269)
T ss_pred             c
Confidence            6

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.24  E-value=1.2e-11  Score=110.60  Aligned_cols=163  Identities=17%  Similarity=0.133  Sum_probs=99.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcH-----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSE-----   87 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~-----   87 (228)
                      -+++.+++|+|++|||||||++.|+|...+.+|    .+..+.....   ..........+.+.|-++...-.+.     
T Consensus       476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G----~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~  551 (686)
T TIGR03797       476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG----SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGA  551 (686)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC----EEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCC
Confidence            457889999999999999999999999875544    3333221111   0001112233344444332210000     


Q ss_pred             -HHHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           88 -FVGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        88 -~~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                       ...+++..+....         ..+.|..+  -+....+|+|++|++.++++++.+|   ++++   +++.+|....  
T Consensus       552 ~~~~e~i~~al~~a~l~~~i~~lp~G~dt~i--ge~G~~LSGGQrQRialARAll~~p---~iLiLDEpTS~LD~~te--  624 (686)
T TIGR03797       552 PLTLDEAWEAARMAGLAEDIRAMPMGMHTVI--SEGGGTLSGGQRQRLLIARALVRKP---RILLFDEATSALDNRTQ--  624 (686)
T ss_pred             CCCHHHHHHHHHHcCcHHHHHhccccccccc--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH--
Confidence             0012233332211         11223222  2333579999999999999999988   5666   8899998877  


Q ss_pred             hhHHHHhhccC------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          155 KTLEDFLGHEC------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       155 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      +.+.+.+++..      +|....+ +.|+.++++.+|++...
T Consensus       625 ~~i~~~L~~~~~T~IiItHr~~~i-~~~D~Iivl~~G~iv~~  665 (686)
T TIGR03797       625 AIVSESLERLKVTRIVIAHRLSTI-RNADRIYVLDAGRVVQQ  665 (686)
T ss_pred             HHHHHHHHHhCCeEEEEecChHHH-HcCCEEEEEECCEEEEE
Confidence            78877777653      6777555 66999999988876543

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=8.1e-11  Score=92.70  Aligned_cols=169  Identities=11%  Similarity=0.093  Sum_probs=98.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||+|||||+++|.|...+... ...+.+.........     .........+.+.|.++...+..++.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl  106 (252)
T PRK14272         27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNV  106 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHH
Confidence            356779999999999999999999998643210 011222222111100     00111223455556554432222221


Q ss_pred             HHHH-----------HHHHhhccCCccEE--E-EEEe-CCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           90 GKEI-----------VKCLGMAKDGIHAF--L-VVFS-VTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        90 ~~~~-----------~~~~~~~~~~~~~i--l-~v~~-~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      ....           ...........+..  + -..+ ....+|.|+++++.+++++..+|   ++++   |++.+|...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEP~~~LD~~~  183 (252)
T PRK14272        107 VAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEP---EILLMDEPTSALDPAS  183 (252)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCccCCHHH
Confidence            1000           00000000001000  0 0011 11479999999999999999888   4666   999999887


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.+++..        +|....+...|++.+++.++.+..
T Consensus       184 ~--~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T PRK14272        184 T--ARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE  227 (252)
T ss_pred             H--HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            7  77777776543        789999988999999998887643

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.24  E-value=4.7e-11  Score=94.85  Aligned_cols=160  Identities=15%  Similarity=0.141  Sum_probs=93.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCC--CCCCCCCcHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPG--LFDLSAGSEF   88 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG--~~~~~~~~~~   88 (228)
                      .++.+++|+|+||+|||||+++|+|...+.+|    .+..........      ........+.+.|.  +.......+.
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG----~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~  111 (268)
T PRK10419         36 KSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREI  111 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHH
Confidence            46679999999999999999999998764444    222222111000      00112234445442  3221111111


Q ss_pred             HH---------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           89 VG---------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        89 ~~---------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      ..               ......+...  +.+.-+ .-.....+|.|+++++.++++++.+|.   ++|   |++.+|..
T Consensus       112 l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~-~~~~~~~LS~Ge~qrl~laral~~~p~---lllLDEPt~~LD~~  185 (268)
T PRK10419        112 IREPLRHLLSLDKAERLARASEMLRAV--DLDDSV-LDKRPPQLSGGQLQRVCLARALAVEPK---LLILDEAVSNLDLV  185 (268)
T ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHc--CCChhH-hhCCCccCChHHHHHHHHHHHHhcCCC---EEEEeCCCcccCHH
Confidence            10               0011111111  111001 111224799999999999999998884   555   89999987


Q ss_pred             ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..  ..+.+.++...          +|....+.+.|+..+++.++.+.
T Consensus       186 ~~--~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~  231 (268)
T PRK10419        186 LQ--AGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV  231 (268)
T ss_pred             HH--HHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence            66  66655554331          78999998999988888877654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=5.7e-11  Score=93.53  Aligned_cols=166  Identities=13%  Similarity=0.073  Sum_probs=97.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++..++|+|+||+|||||++.|+|...+. .....+.+..........     ........+.+.|.++. ....++.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl  105 (251)
T PRK14270         27 IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNV  105 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHH
Confidence            3567899999999999999999999975420 000112222221111000     00112345555555543 2222211


Q ss_pred             H---------------HHHHHHHhhccCCcc-EEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           90 G---------------KEIVKCLGMAKDGIH-AFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        90 ~---------------~~~~~~~~~~~~~~~-~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      .               +.....+...  +.. .+- ..-.....+|.|+++++.++++++.++   ++++   |++.+|.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p---~llllDEP~~~LD~  180 (251)
T PRK14270        106 AYGPRIHGIKDKKELDKIVEWALKKA--ALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKP---DVILMDEPTSALDP  180 (251)
T ss_pred             HhHHHhcCCCcHHHHHHHHHHHHHHc--CCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCH
Confidence            1               0000111110  000 000 011112579999999999999998887   4666   9999999


Q ss_pred             CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ...  ..+.+.+.+..        +|+...+.+.|++.+++.++.+..
T Consensus       181 ~~~--~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~  226 (251)
T PRK14270        181 IST--LKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE  226 (251)
T ss_pred             HHH--HHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence            877  77777776542        789999889999999998887643

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.23  E-value=1.1e-11  Score=109.68  Aligned_cols=153  Identities=11%  Similarity=0.058  Sum_probs=92.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC-CCCCCCCCcHHH-----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFV-----   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~-----   89 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .+..... ..+       .++.+.+ .+....+..+.+     
T Consensus       342 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G----~i~~~~~-~~i-------~y~~q~~~~l~~~~tv~e~l~~~~~  409 (635)
T PRK11147        342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG----RIHCGTK-LEV-------AYFDQHRAELDPEKTVMDNLAEGKQ  409 (635)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc----EEEECCC-cEE-------EEEeCcccccCCCCCHHHHHHhhcc
Confidence            356679999999999999999999998765444    2211000 000       0111111 111111111110     


Q ss_pred             -------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           90 -------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        90 -------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                             ...+...+...  ++..- ........+|+|+++++.+++.++.++   +++|   |+|++|....  ..+.+
T Consensus       410 ~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgGekqRl~la~al~~~p---~lLlLDEPt~~LD~~~~--~~l~~  481 (635)
T PRK11147        410 EVMVNGRPRHVLGYLQDF--LFHPK-RAMTPVKALSGGERNRLLLARLFLKPS---NLLILDEPTNDLDVETL--ELLEE  481 (635)
T ss_pred             cccccchHHHHHHHHHhc--CCCHH-HHhChhhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHH
Confidence                   01111111111  00000 001111479999999999999998877   4666   9999999887  88888


Q ss_pred             HhhccC------CchHHHHHHhcCCeEEEe-eCCCc
Q 027090          160 FLGHEC------PKPLKEILQLCDNRCVLF-DNKTK  188 (228)
Q Consensus       160 ~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~  188 (228)
                      .++.+.      +|+...+...|+.++++. ++.+.
T Consensus       482 ~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~  517 (635)
T PRK11147        482 LLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIG  517 (635)
T ss_pred             HHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEE
Confidence            888754      899999999999888886 56543

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.23  E-value=6.9e-11  Score=92.07  Aligned_cols=160  Identities=18%  Similarity=0.137  Sum_probs=93.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV---   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~---   89 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.|.+... ...++.   
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~enl~~~   99 (234)
T cd03251          25 IPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG----RILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENIAYG   99 (234)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccccCCCC----EEEECCEEhhhCCHHHHHhhEEEeCCCCeeccc-cHHHHhhcc
Confidence            346679999999999999999999999765444    22221111000   0000111222233322211 000000   


Q ss_pred             -----HHHHHHH---------HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 -----GKEIVKC---------LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 -----~~~~~~~---------~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                           ..++...         +.....+.+..  .-.....+|.++++++.++++++.+|.   +++   |++.+|....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~---lllLDEP~~~LD~~~~  174 (234)
T cd03251         100 RPGATREEVEEAARAANAHEFIMELPEGYDTV--IGERGVKLSGGQRQRIAIARALLKDPP---ILILDEATSALDTESE  174 (234)
T ss_pred             CCCCCHHHHHHHHHHcCcHHHHHhcccCccee--eccCCCcCCHHHHHHHHHHHHHhcCCC---EEEEeCccccCCHHHH
Confidence                 0111110         00000012211  112225799999999999999998884   555   9999999877


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                        ..+.+.+.+..        +|....+.. |+..+++.++.+.
T Consensus       175 --~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~  215 (234)
T cd03251         175 --RLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV  215 (234)
T ss_pred             --HHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe
Confidence              78877776643        788888755 9888888888764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.23  E-value=1.4e-11  Score=110.59  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCC----------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDL----------   82 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~----------   82 (228)
                      -+++.+++|+|++|||||||++.|+|...+..|    .+..+.....   ..........+.+.|-+++.          
T Consensus       502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G----~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~  577 (710)
T TIGR03796       502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD  577 (710)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC
Confidence            467889999999999999999999999875544    3332221110   00011111233333333221          


Q ss_pred             -CCCcHHHHHHHHHHHhh---------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           83 -SAGSEFVGKEIVKCLGM---------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        83 -~~~~~~~~~~~~~~~~~---------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                       ...+    +++..+...         ...+.|..+  -+....+|+|++|++.++++++.+|   ++++   +++.+|.
T Consensus       578 ~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i--~e~G~~LSGGQrQRiaLARall~~p---~iliLDEptS~LD~  648 (710)
T TIGR03796       578 PTIPD----ADLVRACKDAAIHDVITSRPGGYDAEL--AEGGANLSGGQRQRLEIARALVRNP---SILILDEATSALDP  648 (710)
T ss_pred             CCCCH----HHHHHHHHHhCCHHHHHhCcCccccee--ccCCCCCCHHHHHHHHHHHHHhhCC---CEEEEECccccCCH
Confidence             1112    222222221         112334332  2334579999999999999999888   4666   8899998


Q ss_pred             CccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          150 LEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ...  ..+.+.+....      +|....+ ..|+.++++.+|.+..
T Consensus       649 ~te--~~i~~~l~~~~~T~IiitHrl~~i-~~~D~Iivl~~G~i~~  691 (710)
T TIGR03796       649 ETE--KIIDDNLRRRGCTCIIVAHRLSTI-RDCDEIIVLERGKVVQ  691 (710)
T ss_pred             HHH--HHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEeCCEEEE
Confidence            877  77777776533      6777655 5699999998887654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.23  E-value=3e-11  Score=96.10  Aligned_cols=168  Identities=10%  Similarity=0.077  Sum_probs=97.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++.+++|+|+||+|||||+++|+|.... ...+..+.+........   .  .........+.+.|.++.. ...++.
T Consensus        47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni  125 (271)
T PRK14238         47 IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNV  125 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHH
Confidence            356789999999999999999999997541 00011122222221110   0  0011223455666665432 222211


Q ss_pred             HHH-----------HHHHHhhccCCccE---EE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           90 GKE-----------IVKCLGMAKDGIHA---FL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        90 ~~~-----------~~~~~~~~~~~~~~---il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      .-.           ............+.   +. ..-.....+|.|+++++.++++++.++.   +++   |++.+|...
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~---lllLDEPt~~LD~~~  202 (271)
T PRK14238        126 TYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPD---VILMDEPTSALDPIS  202 (271)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCCCcCCHHH
Confidence            000           00000000001100   00 0011125799999999999999998884   555   999999987


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.+....        +|++..+...|++.+++.++.+..
T Consensus       203 ~--~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~  246 (271)
T PRK14238        203 T--LKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE  246 (271)
T ss_pred             H--HHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence            7  77777766543        688999889999988988887643

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.23  E-value=2.3e-11  Score=92.79  Aligned_cols=135  Identities=17%  Similarity=0.133  Sum_probs=77.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVG---   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~---   90 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.+|    .+.........  .........+.+.+.+....+..+...   
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G----~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~   99 (204)
T PRK13538         24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAG----EVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQ   99 (204)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHH
Confidence            346679999999999999999999998775444    22222111100  001112233445454443222222110   


Q ss_pred             --------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           91 --------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        91 --------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                              +.+...+...  +...  +.-.....+|.++++++.++++++.+|.   +++   |++.+|....  ..+.+
T Consensus       100 ~~~~~~~~~~~~~~l~~~--gl~~--~~~~~~~~LS~G~~qrl~la~al~~~p~---llllDEPt~~LD~~~~--~~l~~  170 (204)
T PRK13538        100 RLHGPGDDEALWEALAQV--GLAG--FEDVPVRQLSAGQQRRVALARLWLTRAP---LWILDEPFTAIDKQGV--ARLEA  170 (204)
T ss_pred             HhcCccHHHHHHHHHHHc--CCHH--HhhCChhhcCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH--HHHHH
Confidence                    0111111110  1110  0111124799999999999999998884   666   8999998877  77777


Q ss_pred             Hhhc
Q 027090          160 FLGH  163 (228)
Q Consensus       160 ~~~~  163 (228)
                      .+++
T Consensus       171 ~l~~  174 (204)
T PRK13538        171 LLAQ  174 (204)
T ss_pred             HHHH
Confidence            6665

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.23  E-value=2.8e-10  Score=96.25  Aligned_cols=118  Identities=17%  Similarity=0.234  Sum_probs=74.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc---c------------------------c--ccCCCCCcceeeEeEeeeeeC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA---F------------------------K--ASAGSSGVTKTCEMKTTVLKD   67 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~---~------------------------~--~~~~~~~~t~~~~~~~~~~~~   67 (228)
                      ++..+++++|+.++|||||+-+|+-..-   .                        .  ........|.+....... .+
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~   83 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TT   83 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CC
Confidence            4558899999999999999987752110   0                        0  001123455554444333 45


Q ss_pred             CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhCccccccE
Q 027090           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYM  140 (228)
Q Consensus        68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~s------~~~~~~l~~~~~~~~~~~~~~~  140 (228)
                      +..+.++||||.           .++...+......+|++++|+++..+ +.      ...++.+.++.. .+-+   ++
T Consensus        84 ~~~i~liDtPGh-----------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi~---~i  148 (447)
T PLN00043         84 KYYCTVIDAPGH-----------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGVK---QM  148 (447)
T ss_pred             CEEEEEEECCCH-----------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCCC---cE
Confidence            678999999992           34555555555688999999999843 21      333444444433 3333   58


Q ss_pred             EEEEeCCCCC
Q 027090          141 IVVFTGGDDL  150 (228)
Q Consensus       141 llv~~~~D~~  150 (228)
                      ++++||+|..
T Consensus       149 IV~vNKmD~~  158 (447)
T PLN00043        149 ICCCNKMDAT  158 (447)
T ss_pred             EEEEEcccCC
Confidence            8899999975

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=5.2e-11  Score=93.70  Aligned_cols=168  Identities=11%  Similarity=0.072  Sum_probs=97.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++.+++|+|+||+|||||+++|+|...+. .....+.+.........     .........+.+.|.++. ....++.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l  104 (250)
T PRK14262         26 IFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNV  104 (250)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHH
Confidence            3466799999999999999999999975420 00011222222111100     001122334556666544 2222211


Q ss_pred             HHHH-----------HHHHhhccC--CccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           90 GKEI-----------VKCLGMAKD--GIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        90 ~~~~-----------~~~~~~~~~--~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      .-..           ...+.....  +.+..+  ..-.....+|.++++++.++++++.++.   +++   |++.+|...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~---llllDEP~~~LD~~~  181 (250)
T PRK14262        105 AFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE---VILLDEPTSALDPIA  181 (250)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCC---EEEEeCCccccCHHH
Confidence            1000           000000000  010000  0111124799999999999999998884   555   899999987


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.+.+..        +|....+...|+..+++.++.+..
T Consensus       182 ~--~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~  225 (250)
T PRK14262        182 T--QRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE  225 (250)
T ss_pred             H--HHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            7  78877776543        789988889999998988887643

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.23  E-value=1.7e-11  Score=105.70  Aligned_cols=69  Identities=14%  Similarity=0.073  Sum_probs=57.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++.++..+|   .++|   |++++|....  ..+.+.+.++.         +|++..+...|+..+++
T Consensus       395 ~~LSgGq~qrl~la~al~~~p---~lllLDEPt~~LD~~~~--~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l  469 (501)
T PRK11288        395 MNLSGGNQQKAILGRWLSEDM---KVILLDEPTRGIDVGAK--HEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVM  469 (501)
T ss_pred             ccCCHHHHHHHHHHHHHccCC---CEEEEcCCCCCCCHhHH--HHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEE
Confidence            479999999999999998877   3666   9999999887  88877765432         79999999999999998


Q ss_pred             eeCCCc
Q 027090          183 FDNKTK  188 (228)
Q Consensus       183 ~~~~~~  188 (228)
                      .++.+.
T Consensus       470 ~~g~i~  475 (501)
T PRK11288        470 REGRIA  475 (501)
T ss_pred             ECCEEE
Confidence            887654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.22  E-value=5e-11  Score=91.98  Aligned_cols=159  Identities=15%  Similarity=0.093  Sum_probs=91.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF----   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~----   88 (228)
                      -.++..++|+|+||+|||||+++|+|...+..|    .++........   .........+.+.|.+... ...+.    
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~e~l~~~  101 (220)
T cd03245          27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG----SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYG-TLRDNITLG  101 (220)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC----eEEECCEEhHHCCHHHHHhhEEEeCCCCccccc-hHHHHhhcC
Confidence            356789999999999999999999998764444    22221111000   0000111223333332211 10000    


Q ss_pred             -------HHHHHHHHHhhc------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           89 -------VGKEIVKCLGMA------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        89 -------~~~~~~~~~~~~------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                             ...++...+...      ..+.+..  +.+....+|.|+++++.++++++.+|.   +++   |++.+|....
T Consensus       102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--~~~~~~~LSgG~~qrl~la~al~~~p~---llllDEPt~~LD~~~~  176 (220)
T cd03245         102 APLADDERILRAAELAGVTDFVNKHPNGLDLQ--IGERGRGLSGGQRQAVALARALLNDPP---ILLLDEPTSAMDMNSE  176 (220)
T ss_pred             CCCCCHHHHHHHHHHcCcHHHHHhccccccce--ecCCCccCCHHHHHHHHHHHHHhcCCC---EEEEeCccccCCHHHH
Confidence                   001111111100      0011111  111224799999999999999998884   555   9999999887


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCC
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                        ..+.+.+.+..        +|....+ +.|+..+.+.++.+
T Consensus       177 --~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i  216 (220)
T cd03245         177 --ERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRI  216 (220)
T ss_pred             --HHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeE
Confidence              88888777653        6777754 68887777777654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.22  E-value=6.3e-11  Score=86.59  Aligned_cols=121  Identities=21%  Similarity=0.177  Sum_probs=75.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .++..++|+|+||+|||||+++|.|...+..|    .++.          ++..+.     .. .        ...+.  
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G----~i~~----------~~~~~~-----~~-~--------~~~~~--   72 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG----EILI----------DGKDIA-----KL-P--------LEELR--   72 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc----EEEE----------CCEEcc-----cC-C--------HHHHH--
Confidence            45579999999999999999999997642221    2211          111000     00 0        01111  


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------  165 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------  165 (228)
                              ..+.++.+    +|.++++++.++.++...+   ++++   |++.+|....  ..+.+.+....        
T Consensus        73 --------~~i~~~~q----lS~G~~~r~~l~~~l~~~~---~i~ilDEp~~~lD~~~~--~~l~~~l~~~~~~~~tii~  135 (157)
T cd00267          73 --------RRIGYVPQ----LSGGQRQRVALARALLLNP---DLLLLDEPTSGLDPASR--ERLLELLRELAEEGRTVII  135 (157)
T ss_pred             --------hceEEEee----CCHHHHHHHHHHHHHhcCC---CEEEEeCCCcCCCHHHH--HHHHHHHHHHHHCCCEEEE
Confidence                    11223322    8999999999999998877   4555   8999998776  67766665421        


Q ss_pred             -CchHHHHHHhcCCeEEEee
Q 027090          166 -PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       166 -~~~~~~~~~~~~~~~~~~~  184 (228)
                       +|....+...|+..+.+.+
T Consensus       136 ~sh~~~~~~~~~d~i~~l~~  155 (157)
T cd00267         136 VTHDPELAELAADRVIVLKD  155 (157)
T ss_pred             EeCCHHHHHHhCCEEEEEeC
Confidence             5666666666665555543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.22  E-value=2.7e-11  Score=106.44  Aligned_cols=162  Identities=16%  Similarity=0.154  Sum_probs=97.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCc------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGS------   86 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~------   86 (228)
                      -+++.+++|+|++|+|||||++.|+|...+..|    .+.........   .........+.+.|.+++..-.+      
T Consensus       358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G----~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~  433 (588)
T PRK13657        358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG----RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR  433 (588)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC----EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC
Confidence            347789999999999999999999999775444    33322211110   00111223444555443322100      


Q ss_pred             -HHHHHHHHHHHhh---------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           87 -EFVGKEIVKCLGM---------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        87 -~~~~~~~~~~~~~---------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                       +...+++...+..         ...+.|..+  -+....+|+|++|++.++++++.++   ++++   |++.+|.... 
T Consensus       434 ~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i--~~~g~~LSgGq~QRialARall~~~---~iliLDEpts~LD~~t~-  507 (588)
T PRK13657        434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVV--GERGRQLSGGERQRLAIARALLKDP---PILILDEATSALDVETE-  507 (588)
T ss_pred             CCCCHHHHHHHHHHhCHHHHHHhCcccccchh--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH-
Confidence             0001222222111         112334332  2223579999999999999999888   5666   8899998877 


Q ss_pred             hhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          154 EKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       154 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                       +.+.+.+....        +|.... .+.|+.++++.+|.+..
T Consensus       508 -~~i~~~l~~~~~~~tvIiitHr~~~-~~~~D~ii~l~~G~i~~  549 (588)
T PRK13657        508 -AKVKAALDELMKGRTTFIIAHRLST-VRNADRILVFDNGRVVE  549 (588)
T ss_pred             -HHHHHHHHHHhcCCEEEEEEecHHH-HHhCCEEEEEECCEEEE
Confidence             77776666542        677754 57799998888887653

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.22  E-value=1.9e-11  Score=91.39  Aligned_cols=139  Identities=18%  Similarity=0.175  Sum_probs=84.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH---H
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK---E   92 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~---~   92 (228)
                      -.++.+++|+|+||+|||||++.|+|...+..|    .+..          ++..+     ..+.     ......   .
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G----~v~~----------~g~~~-----~~~~-----~~~~~~~i~~   77 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG----EILL----------DGKDL-----ASLS-----PKELARKIAY   77 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEE----------CCEEC-----CcCC-----HHHHHHHHhH
Confidence            346789999999999999999999998653332    2221          11111     0000     000000   0


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC----  165 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~----  165 (228)
                      +...+...  +...  +.-.....+|.++++++.+++++..+|.   +++   |++.+|....  ..+.+.+....    
T Consensus        78 ~~q~l~~~--gl~~--~~~~~~~~LS~G~~qrl~laral~~~p~---llllDEP~~~LD~~~~--~~~~~~l~~~~~~~~  148 (180)
T cd03214          78 VPQALELL--GLAH--LADRPFNELSGGERQRVLLARALAQEPP---ILLLDEPTSHLDIAHQ--IELLELLRRLARERG  148 (180)
T ss_pred             HHHHHHHc--CCHh--HhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCccCCCHHHH--HHHHHHHHHHHHhcC
Confidence            00011110  1110  0111124799999999999999998884   666   9999998776  67766665431    


Q ss_pred             ------CchHHHHHHhcCCeEEEeeCCC
Q 027090          166 ------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       166 ------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                            +|....+.+.|+..+++.++.+
T Consensus       149 ~tiii~sh~~~~~~~~~d~~~~l~~g~i  176 (180)
T cd03214         149 KTVVMVLHDLNLAARYADRVILLKDGRI  176 (180)
T ss_pred             CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence                  6788888888888877776653

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.22  E-value=7.4e-11  Score=103.31  Aligned_cols=167  Identities=19%  Similarity=0.173  Sum_probs=100.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-e--eeeCCcEEEEEeCCCCCC-----------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-T--VLKDGQVVNVIDTPGLFD-----------   81 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~iDtpG~~~-----------   81 (228)
                      -+++.+++++|++||||||+++.|.+...+..|    .+..+..... .  .......-.+.+.|-+++           
T Consensus       352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G----~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~  427 (567)
T COG1132         352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG----EILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR  427 (567)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC----eEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCC
Confidence            567889999999999999999999998764443    3333111110 0  000011111222222221           


Q ss_pred             CCCCcHHHHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           82 LSAGSEFVGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                      ....++    ++.++.+.+         .++.|..+-  ..+..+|+|++|++.++++++.++   |+++   +++.+|.
T Consensus       428 ~~at~e----ei~~a~k~a~~~d~I~~lp~g~dt~vg--e~G~~LSgGQrQrlaiARall~~~---~ILILDEaTSalD~  498 (567)
T COG1132         428 PDATDE----EIEEALKLANAHEFIANLPDGYDTIVG--ERGVNLSGGQRQRLAIARALLRNP---PILILDEATSALDT  498 (567)
T ss_pred             CCCCHH----HHHHHHHHhChHHHHHhCcccccceec--CCCccCCHHHHHHHHHHHHHhcCC---CEEEEeccccccCH
Confidence            112222    333332211         113343332  334579999999999999999888   5666   8899998


Q ss_pred             CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090          150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  202 (228)
                      ..+  ..+.+.+.+..        .|.+..+.. |+.++++.+|++...    ..-++|+.
T Consensus       499 ~tE--~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~----G~h~eLl~  552 (567)
T COG1132         499 ETE--ALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVER----GTHEELLA  552 (567)
T ss_pred             HhH--HHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEe----cCHHHHHH
Confidence            877  77777665321        677766655 999999999986544    44456654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=1.1e-10  Score=103.32  Aligned_cols=68  Identities=12%  Similarity=-0.014  Sum_probs=59.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      ..+|+|+++++.++.+++.+|.   ++|   |+|++|....  .++.+++..+.      +|+...+...|+.++.+.++
T Consensus       148 ~~LSgGerqRv~LA~aL~~~P~---lLLLDEPtn~LD~~~~--~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G  222 (638)
T PRK10636        148 SDFSGGWRMRLNLAQALICRSD---LLLLDEPTNHLDLDAV--IWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQ  222 (638)
T ss_pred             hhcCHHHHHHHHHHHHHccCCC---EEEEcCCCCcCCHHHH--HHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence            4799999999999999998884   555   9999999888  89999998765      89999999999999988887


Q ss_pred             CC
Q 027090          186 KT  187 (228)
Q Consensus       186 ~~  187 (228)
                      .+
T Consensus       223 ~i  224 (638)
T PRK10636        223 SL  224 (638)
T ss_pred             EE
Confidence            65

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=4.2e-11  Score=95.82  Aligned_cols=161  Identities=19%  Similarity=0.121  Sum_probs=92.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCcHHHH--
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGSEFVG--   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~~~~~--   90 (228)
                      .++..++|+|+||+|||||+++|+|...+..+. .+.++........   .........+.+.|. +....+..+++.  
T Consensus        31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~-~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~  109 (282)
T PRK13640         31 PRGSWTALIGHNGSGKSTISKLINGLLLPDDNP-NSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG  109 (282)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccCCCCCC-CcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhh
Confidence            456799999999999999999999987643311 0122222211100   000111234444442 121111111110  


Q ss_pred             ------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           91 ------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        91 ------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                                  +.+...+...  +...  +.-.....+|.|+++++.++.+++.+|.   +++   |++.+|....  .
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LS~G~~qrv~laral~~~P~---llllDEPt~gLD~~~~--~  180 (282)
T PRK13640        110 LENRAVPRPEMIKIVRDVLADV--GMLD--YIDSEPANLSGGQKQRVAIAGILAVEPK---IIILDESTSMLDPAGK--E  180 (282)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHC--CChh--HhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH--H
Confidence                        1111111111  1110  1111125799999999999999999884   666   8999998877  7


Q ss_pred             hHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          156 TLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       156 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+.+.+....          +|.+..+ ..|++.+++.++.+.
T Consensus       181 ~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~  222 (282)
T PRK13640        181 QILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLL  222 (282)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence            7766665431          6888877 579988888888754

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=9.9e-11  Score=93.29  Aligned_cols=160  Identities=13%  Similarity=0.073  Sum_probs=92.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeEe-----eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKT-----TVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -.++.+++|+|+||+|||||+++|+|...+.. .+..+.++.......     ..........+.+.|.++.. ...+++
T Consensus        43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl  121 (274)
T PRK14265         43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENI  121 (274)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHH
Confidence            35678999999999999999999999753210 001122222111110     00011122345555554432 211111


Q ss_pred             HH-------------HHHHHHhhccCCccEEE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           90 GK-------------EIVKCLGMAKDGIHAFL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        90 ~~-------------~~~~~~~~~~~~~~~il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      ..             .....+...  +....+  ..-.....+|.|+++++.++++++.+|.   ++|   |++.+|...
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~---lllLDEPt~~LD~~~  196 (274)
T PRK14265        122 AFAPRANGYKGNLDELVEDSLRRA--AIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPD---VLLMDEPCSALDPIS  196 (274)
T ss_pred             HhHHHhcCchHHHHHHHHHHHHHc--ccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCC---EEEEeCCcccCCHHH
Confidence            00             000111100  000000  0111124799999999999999998884   555   999999887


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF  183 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  183 (228)
                      .  ..+.+.+.+..        +|+...+.+.|++.+++.
T Consensus       197 ~--~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  234 (274)
T PRK14265        197 T--RQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFN  234 (274)
T ss_pred             H--HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            7  77777776553        789999999999888886

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.22  E-value=4e-11  Score=103.69  Aligned_cols=69  Identities=17%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++++++.+|   .++|   |++.+|....  +.+.+.++...         +|++..+...|+..+++
T Consensus       408 ~~LSgGq~qrv~lAral~~~p---~lLlLDEPt~~LD~~~~--~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l  482 (510)
T PRK09700        408 TELSGGNQQKVLISKWLCCCP---EVIIFDEPTRGIDVGAK--AEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF  482 (510)
T ss_pred             ccCChHHHHHHHHHHHHhcCC---CEEEECCCCCCcCHHHH--HHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence            479999999999999998877   3666   9999999877  78887776542         89999999999998888


Q ss_pred             eeCCCc
Q 027090          183 FDNKTK  188 (228)
Q Consensus       183 ~~~~~~  188 (228)
                      .++.+.
T Consensus       483 ~~G~i~  488 (510)
T PRK09700        483 CEGRLT  488 (510)
T ss_pred             ECCEEE
Confidence            888754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.22  E-value=1.3e-11  Score=106.61  Aligned_cols=69  Identities=16%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++++++.+|   +++|   |++.+|....  ..+.+.++++.         +|++..+.+.|+..+++
T Consensus       402 ~~LSgG~kqrl~la~al~~~p---~lLlLDEPt~gLD~~~~--~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l  476 (510)
T PRK15439        402 RTLSGGNQQKVLIAKCLEASP---QLLIVDEPTRGVDVSAR--NDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM  476 (510)
T ss_pred             ccCCcHHHHHHHHHHHHhhCC---CEEEECCCCcCcChhHH--HHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            479999999999999998887   3665   9999999887  88887776542         89999999999999999


Q ss_pred             eeCCCc
Q 027090          183 FDNKTK  188 (228)
Q Consensus       183 ~~~~~~  188 (228)
                      .++.+.
T Consensus       477 ~~G~i~  482 (510)
T PRK15439        477 HQGEIS  482 (510)
T ss_pred             ECCEEE
Confidence            888654

>PLN03073 ABC transporter F family; Provisional

Probab=99.22  E-value=4.3e-11  Score=106.51  Aligned_cols=150  Identities=17%  Similarity=0.092  Sum_probs=91.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC--CCCC-----------C
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP--GLFD-----------L   82 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp--G~~~-----------~   82 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .+..... ..+       .++.+.+  ++.-           .
T Consensus       532 i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G----~I~~~~~-~~i-------gyv~Q~~~~~l~~~~~~~~~~~~~~  599 (718)
T PLN03073        532 IDLDSRIAMVGPNGIGKSTILKLISGELQPSSG----TVFRSAK-VRM-------AVFSQHHVDGLDLSSNPLLYMMRCF  599 (718)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc----eEEECCc-eeE-------EEEeccccccCCcchhHHHHHHHhc
Confidence            346679999999999999999999998765444    2221100 000       0111111  0000           0


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                      ....+   +.+...+...  ++..- ........+|+|+++++.+++.++.+|   +++|   |+|++|....  ..+..
T Consensus       600 ~~~~~---~~i~~~L~~~--gl~~~-~~~~~~~~LSgGqkqRvaLAraL~~~p---~lLLLDEPT~~LD~~s~--~~l~~  668 (718)
T PLN03073        600 PGVPE---QKLRAHLGSF--GVTGN-LALQPMYTLSGGQKSRVAFAKITFKKP---HILLLDEPSNHLDLDAV--EALIQ  668 (718)
T ss_pred             CCCCH---HHHHHHHHHC--CCChH-HhcCCccccCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHH
Confidence            00000   1111222111  11100 011112479999999999999998887   4666   9999998877  77877


Q ss_pred             HhhccC------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          160 FLGHEC------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       160 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+..+.      +|+...+...|+..+++.++.+.
T Consensus       669 ~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~  703 (718)
T PLN03073        669 GLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT  703 (718)
T ss_pred             HHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            776543      89999999999999988887653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=3.3e-11  Score=95.87  Aligned_cols=159  Identities=14%  Similarity=0.117  Sum_probs=92.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCC-CCCCCCCcHHHH-
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPG-LFDLSAGSEFVG-   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG-~~~~~~~~~~~~-   90 (228)
                      -.++..++|+|+||+|||||+++|+|...+.+|    .+.........   .........+.+.|. .....+..++.. 
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~  107 (271)
T PRK13632         32 INEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF  107 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----eEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHh
Confidence            356789999999999999999999998764444    22222211100   001111234444442 121111111110 


Q ss_pred             -------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           91 -------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        91 -------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                                   ..+...+...  +.+.  +.-.....+|.|+++++.++++++.+|   ++++   |++.+|....  
T Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrl~laral~~~p---~lllLDEP~~gLD~~~~--  178 (271)
T PRK13632        108 GLENKKVPPKKMKDIIDDLAKKV--GMED--YLDKEPQNLSGGQKQRVAIASVLALNP---EIIIFDESTSMLDPKGK--  178 (271)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHc--CCHH--HhhCCcccCCHHHHHHHHHHHHHHcCC---CEEEEeCCcccCCHHHH--
Confidence                         0011111110  1110  111112579999999999999999888   4666   9999998876  


Q ss_pred             hhHHHHhhcc-----C-----CchHHHHHHhcCCeEEEeeCCCc
Q 027090          155 KTLEDFLGHE-----C-----PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       155 ~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..+.+.+.+.     .     +|....+. .|+..+++.++.+.
T Consensus       179 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~  221 (271)
T PRK13632        179 REIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI  221 (271)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE
Confidence            7777666543     1     67887774 78888888887754

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.22  E-value=4.9e-11  Score=103.99  Aligned_cols=150  Identities=14%  Similarity=0.027  Sum_probs=91.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC-CCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~~----   90 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .+..... .       ...++.+.+ .+....+..+.+.    
T Consensus       345 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G----~i~~~~~-~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~  412 (552)
T TIGR03719       345 LPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG----TIKIGET-V-------KLAYVDQSRDALDPNKTVWEEISGGLD  412 (552)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe----EEEECCc-e-------EEEEEeCCccccCCCCcHHHHHHhhcc
Confidence            356779999999999999999999998765444    2211000 0       011122221 1111111111100    


Q ss_pred             --------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           91 --------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        91 --------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                              ......+...  +.... ..-.....+|+|+++++.++++++.+|   +++|   |++++|....  ..+.+
T Consensus       413 ~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgGe~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~l~~  484 (552)
T TIGR03719       413 IIQLGKREVPSRAYVGRF--NFKGS-DQQKKVGQLSGGERNRVHLAKTLKSGG---NVLLLDEPTNDLDVETL--RALEE  484 (552)
T ss_pred             ccccCcchHHHHHHHHhC--CCChh-HhcCchhhCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHH--HHHHH
Confidence                    0011111111  11100 011111579999999999999998888   4666   9999999888  88998


Q ss_pred             HhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090          160 FLGHEC------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       160 ~~~~~~------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      .+.++.      +|+...+...|+..+++.++
T Consensus       485 ~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~  516 (552)
T TIGR03719       485 ALLEFAGCAVVISHDRWFLDRIATHILAFEGD  516 (552)
T ss_pred             HHHHCCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence            888764      89999999999988887653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.22  E-value=7.5e-11  Score=93.35  Aligned_cols=164  Identities=15%  Similarity=0.098  Sum_probs=94.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEe-----eeeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKT-----TVLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .-+++.+++|+|+||+|||||+++|+|...+... ...+.+........     ..........+.+.+.+.. ....++
T Consensus        29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~en  107 (261)
T PRK14258         29 EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDN  107 (261)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHH
Confidence            3456789999999999999999999998753200 01122222111100     0001111234455555443 222221


Q ss_pred             HHH-----------HHHHHHhhccCCccE--EE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           89 VGK-----------EIVKCLGMAKDGIHA--FL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        89 ~~~-----------~~~~~~~~~~~~~~~--il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      ...           +............+.  .+  ..-.....+|.|+++++.++++++.+|   ++++   |++.+|..
T Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p---~vllLDEP~~~LD~~  184 (261)
T PRK14258        108 VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKP---KVLLMDEPCFGLDPI  184 (261)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCC---CEEEEeCCCccCCHH
Confidence            110           000000000001110  00  011112579999999999999999888   4666   89999988


Q ss_pred             ccchhhHHHHhhcc----C------CchHHHHHHhcCCeEEEee
Q 027090          151 EDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       151 ~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~  184 (228)
                      ..  ..+.+.+...    .      +|+...+.+.|++++++.+
T Consensus       185 ~~--~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~  226 (261)
T PRK14258        185 AS--MKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG  226 (261)
T ss_pred             HH--HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence            77  7777766542    1      7999999999999988887

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.21  E-value=5e-11  Score=93.72  Aligned_cols=148  Identities=18%  Similarity=0.154  Sum_probs=88.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC--CcHH-----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA--GSEF-----   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~-----   88 (228)
                      -+++.+++|+|+||+|||||+++|+|...+.+|    .+....        ......+.+.|.+.....  ..+.     
T Consensus        27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G----~i~~~~--------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~   94 (251)
T PRK09544         27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG----VIKRNG--------KLRIGYVPQKLYLDTTLPLTVNRFLRLRP   94 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECC--------ccCEEEeccccccccccChhHHHHHhccc
Confidence            346779999999999999999999998764444    111110        011122333333221100  0000     


Q ss_pred             --HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090           89 --VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        89 --~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~  163 (228)
                        ..+++...+...  +...  +.-.....+|.|+++++.++.+++.+|.   +++   |++.+|....  ..+.+.+.+
T Consensus        95 ~~~~~~~~~~l~~~--gl~~--~~~~~~~~LSgGq~qrv~laral~~~p~---lllLDEPt~~LD~~~~--~~l~~~L~~  165 (251)
T PRK09544         95 GTKKEDILPALKRV--QAGH--LIDAPMQKLSGGETQRVLLARALLNRPQ---LLVLDEPTQGVDVNGQ--VALYDLIDQ  165 (251)
T ss_pred             cccHHHHHHHHHHc--CChH--HHhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCHHHH--HHHHHHHHH
Confidence              001111111111  1110  0111124799999999999999988883   555   9999998876  777666643


Q ss_pred             c----C------CchHHHHHHhcCCeEEEee
Q 027090          164 E----C------PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       164 ~----~------~~~~~~~~~~~~~~~~~~~  184 (228)
                      .    .      +|....+...|+..+++.+
T Consensus       166 ~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~  196 (251)
T PRK09544        166 LRRELDCAVLMVSHDLHLVMAKTDEVLCLNH  196 (251)
T ss_pred             HHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence            2    1      7999999999998887744

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=1.1e-10  Score=92.11  Aligned_cols=165  Identities=15%  Similarity=0.110  Sum_probs=95.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++..++|+|+||+|||||+++|+|...+. .....+.+.........     .........+.+.|.++.. ...++..
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~  108 (253)
T PRK14261         30 PKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVA  108 (253)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHH
Confidence            567799999999999999999999864311 00011222222111100     0011122455566655432 1111110


Q ss_pred             ---------------HHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           91 ---------------KEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        91 ---------------~~~~~~~~~~~~~~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                                     ..+...+... .-.+.+. ..-.....+|.++++++.++++++.+|.   +++   |++.+|...
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~---lllLDEP~~gLD~~~  184 (253)
T PRK14261        109 YGPRIHGEKNKKTLDTIVEKSLKGA-ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPE---VILMDEPCSALDPIA  184 (253)
T ss_pred             hhHHhcCCCCHHHHHHHHHHHHHHh-cCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHH
Confidence                           0011111100 0000000 0111124799999999999999998884   555   999999887


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .  ..+.+.+....        +|....+.+.|++.+++.++.+.
T Consensus       185 ~--~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~  227 (253)
T PRK14261        185 T--AKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI  227 (253)
T ss_pred             H--HHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence            7  77777776543        78999998899988888888764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.21  E-value=2e-11  Score=105.26  Aligned_cols=69  Identities=14%  Similarity=0.200  Sum_probs=58.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++++++.+|   +++|   |++.+|....  ..+.+.++.+.         +|++..+...|+..+++
T Consensus       394 ~~LSgGekqrv~lA~al~~~p---~lllLDEPt~~LD~~~~--~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l  468 (501)
T PRK10762        394 GLLSGGNQQKVAIARGLMTRP---KVLILDEPTRGVDVGAK--KEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVM  468 (501)
T ss_pred             hhCCHHHHHHHHHHHHHhhCC---CEEEEcCCCCCCCHhHH--HHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence            579999999999999998887   4666   9999999877  77777776642         89999999999999999


Q ss_pred             eeCCCc
Q 027090          183 FDNKTK  188 (228)
Q Consensus       183 ~~~~~~  188 (228)
                      .++.+.
T Consensus       469 ~~G~i~  474 (501)
T PRK10762        469 HEGRIS  474 (501)
T ss_pred             ECCEEE
Confidence            888754

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.21  E-value=3.6e-11  Score=104.86  Aligned_cols=152  Identities=13%  Similarity=0.002  Sum_probs=92.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC-CCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~~----   90 (228)
                      -.++.+++|+|+||||||||+++|+|...+.+|    .+..... .       ...++.+.+ .+....+..+.+.    
T Consensus       347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G----~i~~~~~-~-------~i~~v~q~~~~~~~~~tv~e~l~~~~~  414 (556)
T PRK11819        347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG----TIKIGET-V-------KLAYVDQSRDALDPNKTVWEEISGGLD  414 (556)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCc-e-------EEEEEeCchhhcCCCCCHHHHHHhhcc
Confidence            356679999999999999999999998765444    1111000 0       011222222 1211111111100    


Q ss_pred             --------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           91 --------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        91 --------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                              ......+...  ++... ..-.....+|+|+++++.++++++.+|   +++|   |++++|....  ..+.+
T Consensus       415 ~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgG~~qrv~la~al~~~p---~lllLDEPt~~LD~~~~--~~l~~  486 (556)
T PRK11819        415 IIKVGNREIPSRAYVGRF--NFKGG-DQQKKVGVLSGGERNRLHLAKTLKQGG---NVLLLDEPTNDLDVETL--RALEE  486 (556)
T ss_pred             cccccccHHHHHHHHHhC--CCChh-HhcCchhhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHH
Confidence                    0111111111  11000 011112479999999999999998888   4666   9999999888  88988


Q ss_pred             HhhccC------CchHHHHHHhcCCeEEEee-CCC
Q 027090          160 FLGHEC------PKPLKEILQLCDNRCVLFD-NKT  187 (228)
Q Consensus       160 ~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~  187 (228)
                      .+.++.      +|++..+...|+.++++.+ +.+
T Consensus       487 ~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~  521 (556)
T PRK11819        487 ALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQV  521 (556)
T ss_pred             HHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeE
Confidence            888764      8999999999998888765 443

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.21  E-value=7.9e-11  Score=92.66  Aligned_cols=70  Identities=6%  Similarity=0.119  Sum_probs=57.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF  183 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  183 (228)
                      ..+|.|+++++.+++++..+|.   +++   |++.+|....  ..+.+.+.+..        +|....+...|++.+++.
T Consensus       145 ~~LS~G~~qrv~laral~~~p~---lllLDEPt~~LD~~~~--~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~  219 (250)
T PRK14245        145 FALSGGQQQRLCIARAMAVSPS---VLLMDEPASALDPIST--AKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFY  219 (250)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH--HHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEE
Confidence            4799999999999999998884   555   9999998877  77777776543        789999989999999988


Q ss_pred             eCCCcc
Q 027090          184 DNKTKD  189 (228)
Q Consensus       184 ~~~~~~  189 (228)
                      ++.+..
T Consensus       220 ~G~~~~  225 (250)
T PRK14245        220 MGEMVE  225 (250)
T ss_pred             CCEEEE
Confidence            887643

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.21  E-value=6.3e-11  Score=93.08  Aligned_cols=159  Identities=14%  Similarity=0.110  Sum_probs=91.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e--eeCCcEEEEEeCCCCCCCCCCc------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V--LKDGQVVNVIDTPGLFDLSAGS------   86 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~--~~~~~~~~~iDtpG~~~~~~~~------   86 (228)
                      -.++.+++|+|+||+|||||+++|+|... .+|    .+......... .  .......++.+.|.+.......      
T Consensus        19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G----~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~   93 (248)
T PRK03695         19 VRAGEILHLVGPNGAGKSTLLARMAGLLP-GSG----SIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLH   93 (248)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCe----EEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhc
Confidence            35667999999999999999999999753 222    22221111000 0  0001112333333322111100      


Q ss_pred             -------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC-------ccccccEEE---EEeCCCC
Q 027090           87 -------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG-------KNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        87 -------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~-------~~~~~~~ll---v~~~~D~  149 (228)
                             ....+.+...+...  +...  ..-.....+|.|+++++.++++++.       ++   .+++   |++.+|.
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p---~llllDEPt~~LD~  166 (248)
T PRK03695         94 QPDKTRTEAVASALNEVAEAL--GLDD--KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG---QLLLLDEPMNSLDV  166 (248)
T ss_pred             CccCCCcHHHHHHHHHHHHHc--CCHh--HhcCCcccCCHHHHHHHHHHHHHhccccccCCCC---CEEEEcCCcccCCH
Confidence                   00001111122111  1110  1111125799999999999999985       33   3555   8899998


Q ss_pred             CccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          150 LEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ...  ..+.+.+....         +|.+..+...|+..+++.++.+.
T Consensus       167 ~~~--~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~  212 (248)
T PRK03695        167 AQQ--AALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL  212 (248)
T ss_pred             HHH--HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            877  77777766542         78999999999999999888764

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=6.5e-11  Score=96.45  Aligned_cols=165  Identities=12%  Similarity=0.102  Sum_probs=98.8

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCC--CCCCCCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPG--LFDLSAG   85 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG--~~~~~~~   85 (228)
                      ..-.++..++|+|+||||||||+++|+|...+.+|    .+..........      ........+.+-|.  +......
T Consensus        36 l~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G----~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v  111 (327)
T PRK11308         36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGG----ELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKV  111 (327)
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc----EEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCH
Confidence            33456789999999999999999999998764433    222222111000      00112234444442  2211111


Q ss_pred             cHHH---------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090           86 SEFV---------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG  147 (228)
Q Consensus        86 ~~~~---------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~  147 (228)
                      .+.+               .+....++...  +.+.- ..-.....+|+|+++++.++.+++.+|.   ++|   |++.+
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~-~~~~~p~~LSgGq~QRv~iArAL~~~P~---lLilDEPts~L  185 (327)
T PRK11308        112 GQILEEPLLINTSLSAAERREKALAMMAKV--GLRPE-HYDRYPHMFSGGQRQRIAIARALMLDPD---VVVADEPVSAL  185 (327)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHC--CCChH-HhcCCCccCCHHHHHHHHHHHHHHcCCC---EEEEECCCccC
Confidence            1111               01111222211  11100 0111225799999999999999998884   666   89999


Q ss_pred             CCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          148 DDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       148 D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      |....  .++.+.+.+..          +|++..+...|+.++++..+.+...
T Consensus       186 D~~~~--~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~  236 (327)
T PRK11308        186 DVSVQ--AQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK  236 (327)
T ss_pred             CHHHH--HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            98877  77777665432          7999999999999999998876543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1.1e-10  Score=91.96  Aligned_cols=167  Identities=12%  Similarity=0.076  Sum_probs=98.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee-----eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~-----~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      .++..++|+|+||+|||||++.|+|...+..+ +..+.+.........     .........+.+.|.+... ...++..
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~  106 (251)
T PRK14249         28 PERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVA  106 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHh
Confidence            46779999999999999999999998764321 011222222111100     0011223455666655432 2211110


Q ss_pred             H-----------HHHHHHhhccCCccEE--E--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           91 K-----------EIVKCLGMAKDGIHAF--L--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        91 ~-----------~~~~~~~~~~~~~~~i--l--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      -           +....+..........  +  +.-.....+|.++++++.++++++.+|.   +++   |++.+|....
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~---lllLDEPt~~LD~~~~  183 (251)
T PRK14249        107 FGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPE---VILMDEPCSALDPVST  183 (251)
T ss_pred             hHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCCccCCHHHH
Confidence            0           0000000000000100  0  0111125799999999999999998884   555   9999998877


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                        ..+.+.+....        +|....+...|++.+++.++.+..
T Consensus       184 --~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~  226 (251)
T PRK14249        184 --MRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE  226 (251)
T ss_pred             --HHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence              77777776542        789999999999999998887643

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.20  E-value=6.7e-11  Score=93.23  Aligned_cols=69  Identities=17%  Similarity=0.107  Sum_probs=56.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc----C------CchHHHHHHhcCCeEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE----C------PKPLKEILQLCDNRCV  181 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~  181 (228)
                      ..+|.|+++++.++++++.+|   ++++   |++.+|....  ..+.+.+.+.    .      +|....+...|+..++
T Consensus       147 ~~LSgG~~qrv~laral~~~p---~vlllDEP~~~LD~~~~--~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~  221 (253)
T TIGR02323       147 RAFSGGMQQRLQIARNLVTRP---RLVFMDEPTGGLDVSVQ--ARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLV  221 (253)
T ss_pred             hhcCHHHHHHHHHHHHHhcCC---CEEEEcCCCccCCHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            479999999999999999888   4666   9999998877  7776665442    1      7899988889998888


Q ss_pred             EeeCCCc
Q 027090          182 LFDNKTK  188 (228)
Q Consensus       182 ~~~~~~~  188 (228)
                      +.++.+.
T Consensus       222 l~~G~i~  228 (253)
T TIGR02323       222 MQQGRVV  228 (253)
T ss_pred             EECCEEE
Confidence            8888764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.20  E-value=3e-11  Score=106.59  Aligned_cols=163  Identities=13%  Similarity=0.121  Sum_probs=98.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e-----eeCCcEEEEEeCC--CCCCCCCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V-----LKDGQVVNVIDTP--GLFDLSAG   85 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~~iDtp--G~~~~~~~   85 (228)
                      ..-.++.+++|+|+||||||||+++|+|...+.+|    .+......... .     ........+.+.|  .+......
T Consensus       345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv  420 (623)
T PRK10261        345 FDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG----EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTV  420 (623)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCc----EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCH
Confidence            34457789999999999999999999998765444    22221111100 0     0011123344444  23322222


Q ss_pred             cHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090           86 SEFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG  147 (228)
Q Consensus        86 ~~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~  147 (228)
                      .+.+..               .+...+...  +...- +.-.....+|+|+++++.++++++.+|.   ++|   |++.+
T Consensus       421 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~--gL~~~-~~~~~~~~LSgGqrQRv~iAraL~~~p~---llllDEPts~L  494 (623)
T PRK10261        421 GDSIMEPLRVHGLLPGKAAAARVAWLLERV--GLLPE-HAWRYPHEFSGGQRQRICIARALALNPK---VIIADEAVSAL  494 (623)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHc--CCCHH-HhhCCcccCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccC
Confidence            221110               011111111  11000 0111125799999999999999998884   666   99999


Q ss_pred             CCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          148 DDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       148 D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      |....  ..+.+.++.+.          +|++..+...|+.++++.++++.
T Consensus       495 D~~~~--~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv  543 (623)
T PRK10261        495 DVSIR--GQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV  543 (623)
T ss_pred             CHHHH--HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            99877  78777774432          79999999999999999888764

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=5.4e-11  Score=94.87  Aligned_cols=166  Identities=14%  Similarity=0.104  Sum_probs=96.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      +++..++|+|+||+|||||+++|+|...+..+ ...+.+.........    .........+.+.|.++. ....+++.-
T Consensus        45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~  123 (276)
T PRK14271         45 PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLA  123 (276)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHH
Confidence            46779999999999999999999998653211 112222222111100    001112234455555443 221211100


Q ss_pred             -----------HHHHHHhhccCCccE--EE--EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           92 -----------EIVKCLGMAKDGIHA--FL--VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        92 -----------~~~~~~~~~~~~~~~--il--~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                 +............+.  .+  ..-.....+|.++++++.+++++..+|   +++|   |++.+|.... 
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p---~lllLDEPt~~LD~~~~-  199 (276)
T PRK14271        124 GVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNP---EVLLLDEPTSALDPTTT-  199 (276)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCC---CEEEEcCCcccCCHHHH-
Confidence                       000000000001111  00  001112479999999999999998888   3665   9999998876 


Q ss_pred             hhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       +.+.+.+.+..        +|....+.+.|++.+++.++.+.
T Consensus       200 -~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~  241 (276)
T PRK14271        200 -EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV  241 (276)
T ss_pred             -HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence             77777666542        78999999999999888888764

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.20  E-value=9.7e-11  Score=98.41  Aligned_cols=179  Identities=15%  Similarity=0.103  Sum_probs=106.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee----CCcEEEEEeCCCCC---------
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLF---------   80 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~iDtpG~~---------   80 (228)
                      ..-.++...+|+|.||+|||||++.|+|...+.+|    .+..+.........    ......+.+.+.+.         
T Consensus        29 l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G----~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNi  104 (500)
T COG1129          29 LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENI  104 (500)
T ss_pred             eEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc----eEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHh
Confidence            34456789999999999999999999999875555    33333222211000    01111222221111         


Q ss_pred             ---CCCC-----C-cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           81 ---DLSA-----G-SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        81 ---~~~~-----~-~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                         ....     . .....+.....+...  +.+ +-.-..+ ..+|.+++|.+++++++..+..   +++   |.+-++
T Consensus       105 fLgre~~~~~g~id~~~m~~~A~~~l~~l--g~~-~~~~~~v-~~LsiaqrQ~VeIArAl~~~ar---llIlDEPTaaLt  177 (500)
T COG1129         105 FLGREPTRRFGLIDRKAMRRRARELLARL--GLD-IDPDTLV-GDLSIAQRQMVEIARALSFDAR---VLILDEPTAALT  177 (500)
T ss_pred             hcccccccCCCccCHHHHHHHHHHHHHHc--CCC-CChhhhh-hhCCHHHHHHHHHHHHHhcCCC---EEEEcCCcccCC
Confidence               1110     0 111111122222211  111 0111111 5899999999999999977653   555   777777


Q ss_pred             CCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCccccc--chHHHHHHHHHHH
Q 027090          149 DLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDEAK--GTEQVRQLLSLVN  205 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~i~  205 (228)
                      ..+.  +.+.+.+++++         +|.++++.+.|+++.++.+|.......  .....+++.+.+.
T Consensus       178 ~~E~--~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~Mv  243 (500)
T COG1129         178 VKET--ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMV  243 (500)
T ss_pred             HHHH--HHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhh
Confidence            7666  77777777766         999999999999999999997543322  3455666666554

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.20  E-value=2.1e-11  Score=104.93  Aligned_cols=162  Identities=16%  Similarity=0.109  Sum_probs=95.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE-eee--eeCCcEEEEEeCCCCCC--------C
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTV--LKDGQVVNVIDTPGLFD--------L   82 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~iDtpG~~~--------~   82 (228)
                      ..-.++..++|+|+||||||||+++|+|...+.+|.    +....... ...  ........+.+.|.+..        .
T Consensus        24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~   99 (490)
T PRK10938         24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE----RQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTG   99 (490)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCce----EEECCcccccCCHHHHHHHhceeccCcchhhcccchhhcc
Confidence            344567899999999999999999999987654442    21111000 000  00000112222222100        0


Q ss_pred             CCCcHH------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           83 SAGSEF------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        83 ~~~~~~------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                      ....+.      ..+.+...+...  +...  +.-.....+|+|+++++.++.+++.+|.   +++   |++.+|.... 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~qrv~la~al~~~p~---lllLDEPt~~LD~~~~-  171 (490)
T PRK10938        100 RTTAEIIQDEVKDPARCEQLAQQF--GITA--LLDRRFKYLSTGETRKTLLCQALMSEPD---LLILDEPFDGLDVASR-  171 (490)
T ss_pred             ccHHHhcccchhHHHHHHHHHHHc--CCHh--hhhCCcccCCHHHHHHHHHHHHHHcCCC---EEEEcCCcccCCHHHH-
Confidence            000000      001111122111  1111  1111225899999999999999998884   555   9999999877 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       .++.+.+.++.         +|++..+.+.|+..+++.++.+.
T Consensus       172 -~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~  214 (490)
T PRK10938        172 -QQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA  214 (490)
T ss_pred             -HHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence             78887776642         79999999999999999888754

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=3.5e-11  Score=100.62  Aligned_cols=167  Identities=18%  Similarity=0.144  Sum_probs=99.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC---Cc-EEEEEeCCC----------CC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQ-VVNVIDTPG----------LF   80 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~-~~~~iDtpG----------~~   80 (228)
                      .-+++.+|+|+|+|||||||++++|++-.. .+    +.+.++.........+   +. -..-.|++=          ++
T Consensus       374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~s----G~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YG  448 (591)
T KOG0057|consen  374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YS----GSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYG  448 (591)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cC----CcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcC
Confidence            346788999999999999999999986432 12    2222222111100000   10 112223332          23


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEE---------eCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVF---------SVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~---------~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                      ......++..+...+    +  +.|..+.-+         .-...+|+|++|++.++++++.++   |+++   +.+++|
T Consensus       449 n~sas~eeV~e~~k~----a--~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda---~Il~~DEaTS~LD  519 (591)
T KOG0057|consen  449 NPSASDEEVVEACKR----A--GLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA---PILLLDEATSALD  519 (591)
T ss_pred             CCCcCHHHHHHHHHH----c--CcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC---CeEEecCcccccc
Confidence            333333333222222    1  223333222         112579999999999999999888   6777   889999


Q ss_pred             CCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090          149 DLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  202 (228)
                      ...+  .++.+.+...-        .|.. +++..|+.++++.+|.+...    ..-+||+.
T Consensus       520 ~~TE--~~i~~~i~~~~~~rTvI~IvH~l-~ll~~~DkI~~l~nG~v~e~----gth~ell~  574 (591)
T KOG0057|consen  520 SETE--REILDMIMDVMSGRTVIMIVHRL-DLLKDFDKIIVLDNGTVKEY----GTHSELLA  574 (591)
T ss_pred             hhhH--HHHHHHHHHhcCCCeEEEEEecc-hhHhcCCEEEEEECCeeEEe----ccHHHHhh
Confidence            8877  77777776622        3444 45678999999999987654    44566655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		6e-32
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		7e-27
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		9e-27
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		3e-26
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		6e-26
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		4e-25
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		1e-04
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-04
3bb1_A	274	Crystal Structure Of Toc34 From Pisum Sativum In Co		7e-04

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 119/204 (58%), Gaps = 6/204 (2%)
Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
           P N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
           DTPG+FD    +    KEI++C+ +   G HA L+V  +  R+++EE  A  ++   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
               + I++FT  DDL D    L D+L  E P+ ++++  +  +R    +NK    A+  
Sbjct: 143 RARSFXILIFTRKDDLGD--TNLHDYL-REAPEDIQDLXDIFGDRYCALNNKATG-AEQE 198
Query: 195 EQVRQLLSLVNSVIVQNGGQPYTD 218
            Q  QLL L+  V+ +N    YT+
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTN 222

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 120/205 (58%), Gaps = 12/205 (5%)
Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
           R ++L+GRTG GKSATGNSILG++ F +  G++ VT+ C   +    D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 80  FDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           F         G +E   C  ++  G HA L+V  +  RF+ +++ AV ++ ++FG++V  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE--- 195
           +M++VFT  +DL     +L D++ +   + L+E++  C  R   FDN+    A G E   
Sbjct: 140 WMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----ATGREQEA 193
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDEL 220
           QV QLL +V  +++++ G  Y++E+
Sbjct: 194 QVVQLLGMVEGLVLEHKGAHYSNEV 218

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score =  116 bits (291), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Query: 10  WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
            + ++V +IDTP +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A 
Sbjct: 69  GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
            R+  +FG++   + IV+FT  +DL     +L D++     K L +++  C  R   F+N
Sbjct: 127 QRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           + +   +  +QV++L+  +  ++++  G  YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELMDCIEDLLMEKNGDHYTNGL 218

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 5/205 (2%)
Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
           S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC        + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
           TP +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A  R+  +FG++
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
              + IV+FT  +DL     +L D++     K L +++  C  R   F+N+ +   +  +
Sbjct: 120 AMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DD 176
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDEL 220
           QV++L+  +  ++++  G  YT+ L
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGL 201

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 115/202 (56%), Gaps = 5/202 (2%)
Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
           E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC        + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
           +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A  R+  +FG++   
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
           + IV+FT  +DL     +L D++     K L +++  C  R   F+N+ +   +  +QV+
Sbjct: 120 HTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DDQVK 176
Query: 199 QLLSLVNSVIVQNGGQPYTDEL 220
           +L+  +  ++++  G  YT+ L
Sbjct: 177 ELMDCIEDLLMEKNGDHYTNGL 198

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 9/215 (4%)
Query: 10  WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
            + ++V +IDTP  F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A 
Sbjct: 69  GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
            R+  +FG++   + IV+FT  +DL     +L D+      K L +++  C  R   F+N
Sbjct: 127 QRVKEIFGEDAXGHTIVLFTHKEDLNG--GSLXDYXHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
           + +   +  +QV++L   +  ++ +  G  YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELXDCIEDLLXEKNGDHYTNGL 218

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
           +  AG  +V  + ++ +   +    I   L V  +   R  + ++  V  +   FGK ++
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
              ++V T        E + E F      + LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDELLKTI 186

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
           +  AG  +V  + ++ +   +    I   L V  +   R  + ++  V  +   FGK ++
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
              ++V T        E + E F        LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTI 186

>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex With Mg2+ And Gmppnp Length = 274

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
           T++++G+ G GKS+T NSI+G +    S   S   +   +  +  + G  +N+IDTPGL 
Sbjct: 41  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDY 139
           +    ++ +   I+K   + K  I   L V  +   R    ++     + + FGK +++ 
Sbjct: 99  EGGYIND-MALNIIKSFLLDKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
Query: 140 MIVVFT 145
            IV  T
Sbjct: 157 AIVALT 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	7e-68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	1e-65
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	6e-65
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	7e-63
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-54
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  208 bits (531), Expect = 7e-68
 Identities = 63/210 (30%), Positives = 115/210 (54%), Gaps = 5/210 (2%)

Query: 11  KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV 70
           K    S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +TKTC          + 
Sbjct: 14  KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNRE 72

Query: 71  VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130
           + +IDTP +F      E + KE+ +C  ++  G H  L+V  +  R++ +++ A  R+  
Sbjct: 73  IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKE 131

Query: 131 LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE 190
           +FG++   + IV+FT  +DL     +L D++     K L +++  C  R   F+N+ +  
Sbjct: 132 IFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGS 189

Query: 191 AKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
            +  +QV++L+  +  ++++  G  YT+ L
Sbjct: 190 NQ-DDQVKELMDCIEDLLMEKNGDHYTNGL 218

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  202 bits (514), Expect = 1e-65
 Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 6/207 (2%)

Query: 14  SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNV 73
            P N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
           +DTPG+FD    +    KEI++C+ +   G HA L+V  +  R+++EE  A  ++  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG 193
           +    +MI++FT  DDL D    L D+L  E P+ +++++ +  +R    +NK     + 
Sbjct: 142 ERARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQ- 197

Query: 194 TEQVRQLLSLVNSVIVQNGGQPYTDEL 220
             Q  QLL L+  V+ +N    YT+ +
Sbjct: 198 EAQRAQLLGLIQRVVRENKEGCYTNRM 224

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  195 bits (498), Expect = 7e-63
 Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 22/236 (9%)

Query: 3   ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
           E++++   K         TV++LG+ G GKS+T NS++G +  + S   +   +   +  
Sbjct: 20  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79

Query: 63  TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122
           T+   G  +N+IDTPGL +    +    + I   L      +  ++    V     + ++
Sbjct: 80  TM--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDK 136

Query: 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182
             V  +   FGK ++   ++V T        E + E F        LK I      R   
Sbjct: 137 QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQE 196

Query: 183 FDNKTKDEA-------------------KGTEQVRQLLSLVNSVIVQNGGQPYTDE 219
           F++                          G   +  L+  +  V        + D 
Sbjct: 197 FEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDA 252

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  174 bits (443), Expect = 2e-54
 Identities = 40/243 (16%), Positives = 84/243 (34%), Gaps = 25/243 (10%)

Query: 3   ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
            ++++             T++++G+ G GKS+T NSI+G +    S   S   +   +  
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 63  TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEE 121
           +    G  +N+IDTPGL +    ++     I   L      I   L V  +   R    +
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138

Query: 122 ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181
           +     + + FGK +++  IV  T            ++F   +  + L ++++   +   
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKK 197

Query: 182 LFDNKTKDEA-------------------KGTEQVRQLLSLVNSVIVQNGGQPYTDELKV 222
                                         G   +  L+  +  V +      + D+  +
Sbjct: 198 DAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLI 257

Query: 223 TSL 225
             L
Sbjct: 258 DKL 260

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 48.2 bits (114), Expect = 8e-07
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 14/142 (9%)

Query: 15  PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNV 73
             +    V + G TG+GKS+  N++ G    +  A  +GV +   E       +   V  
Sbjct: 65  IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 124

Query: 74  IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
            D PG+   +   +           + K   + +     ++    ++ +  + +  ++  
Sbjct: 125 WDLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK 175

Query: 134 KNVFDYMIVVFTGGDDLEDHEK 155
           K        V T  D    +E 
Sbjct: 176 KEF----YFVRTKVDSDITNEA 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 55/207 (26%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
            + V++ G  G+GK     + +        A              V    +V   +D   
Sbjct: 150 AKNVLIDGVLGSGK-----TWV--------ALD------------VCLSYKVQCKMDF-K 183

Query: 79  LFDLSAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
           +F L+  +    + +++        +  +    +      ++       +    L  L  
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV---LFDNKTK-- 188
              ++  ++V     ++++  K    F    C      IL     + V   L    T   
Sbjct: 240 SKPYENCLLVL---LNVQN-AKAWNAF-NLSCK-----ILLTTRFKQVTDFLSAATTTHI 289

Query: 189 ---DEAKG--TEQVRQLLSLVNSVIVQ 210
                +     ++V+ LL        Q
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.96
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.96
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.85
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.85
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.84
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.81
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.79
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.79
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.77
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.77
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.76
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.75
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.75
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.74
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.74
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.74
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.74
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.74
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.74
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.74
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.73
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.73
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.73
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.72
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.72
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.72
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.72
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.72
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.72
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.72
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.72
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.71
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.71
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.71
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.71
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.71
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.71
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.71
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.71
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.71
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.71
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.71
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.71
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.71
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.71
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.71
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.71
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.71
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.71
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.71
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.7
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.7
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.7
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.7
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.7
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.7
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.7
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.7
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.7
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.7
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.7
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.7
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.7
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.7
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.7
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.7
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.7
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.7
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.7
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.7
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.7
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.69
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.69
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.69
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.69
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.69
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.69
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.69
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.69
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.69
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.68
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.68
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.68
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.68
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.68
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.68
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.68
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.68
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.68
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.68
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.68
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.68
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.68
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.68
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.68
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.68
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.67
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.67
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.67
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.67
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.67
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.67
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.67
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.67
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.67
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.67
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.67
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.67
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.66
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.66
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.66
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.66
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.66
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.66
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.66
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.65
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.65
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.65
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.64
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.64
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.64
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.64
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.64
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.64
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.64
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.63
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.63
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.63
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.63
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.63
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.62
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.62
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.42
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.62
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.61
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.61
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.6
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.6
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.58
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.58
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.57
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.57
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.57
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.55
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.55
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.55
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.54
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.54
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.54
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.54
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.53
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.52
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.52
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.52
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.5
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.5
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.49
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.49
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.49
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.49
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.48
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.47
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.46
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.46
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.45
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.44
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.44
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.44
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.44
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.44
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.44
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.44
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.44
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.43
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.42
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.42
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.42
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.41
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.41
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.41
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.4
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.4
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.4
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.39
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.39
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.39
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.39
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.38
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.38
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.38
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.38
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.38
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.38
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.37
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.37
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.37
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.36
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.36
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.36
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.35
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.35
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.34
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.34
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.33
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.32
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.32
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.31
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.31
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.3
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.29
1g6h_A	257	High-affinity branched-chain amino acid transport	99.29
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.28
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.28
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.28
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.27
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.27
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.26
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.24
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.24
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.23
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.23
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.22
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.22
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.22
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.2
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.19
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.18
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.16
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.15
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.14
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.13
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.13
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.13
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.11
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.1
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.1
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.1
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.09
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.09
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.07
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.05
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.04
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.03
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.03
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.03
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.02
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.01
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.99
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.99
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.94
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.91
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.89
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.89
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.87
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.86
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.81
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.73
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.63
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.63
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.62
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.62
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.61
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.59
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.58
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.56
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.55
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.52
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.51
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.5
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.48
2og2_A	359	Putative signal recognition particle receptor; nuc	98.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.43
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.43
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.42
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.42
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.38
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.38
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.36
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.35
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.28
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.25
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.24
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.24
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.2
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.2
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.18
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.14
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.13
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.13
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.12
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.06
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.05
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.05
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.05
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.04
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.04
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.01
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.01
2xxa_A	433	Signal recognition particle protein; protein trans	98.0
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.99
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.97
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.96
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.92
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.91
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.9
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.89
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.88
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.88
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.88
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.86
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.85
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.85
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.85
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.83
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.83
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.83
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.82
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.8
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.77
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.76
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.76
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.75
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.73
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.72
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.72
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.71
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.7
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.69
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.69
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.69
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.69
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.68
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.62
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.6
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.6
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.55
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.55
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.54
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.52
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.51
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.5
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.49
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.49
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.43
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.43
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.42
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.4
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.4
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.4
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.36
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.33
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.33
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.32
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.3
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.3
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.3
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.27
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.26
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.26
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.26
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.24
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.24
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.22
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.22
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.21
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.19
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.18
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.17
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.14
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.13
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.12
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.12
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.12
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.11
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.09
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.09
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.08
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.08
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.07
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.07
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.07
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.07
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.04
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.04
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.03
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.02
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.02
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.02
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.0
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.0
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.99
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.98
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.98
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.98
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.97
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.97
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.96
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.96
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.95
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.94
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.93
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.93
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.92
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.92
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.92
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.91
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.91
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.89
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.86
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.86
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.83
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.82
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.82
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.78
1via_A	175	Shikimate kinase; structural genomics, transferase	96.77
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.77
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.77
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.77
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.77
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.77
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.77
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.75
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.75
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.75
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.73
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.72
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.72
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.71
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.71
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.7
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.67
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.67
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.63
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.62
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.61
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.59
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.59
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.58
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.57
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.57
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.56
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.56
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.54
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.52
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.51
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.51
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.49
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.48
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.48
3bos_A	242	Putative DNA replication factor; P-loop containing	96.46
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.46
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.43
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.42
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.42
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.42
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.41
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.41
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.4
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.4
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.39
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.38
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.35
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.32
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.31
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.28
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.27
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.27
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.26
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.24
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.21
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.19
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.18
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.17
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.17
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.15
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.14
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.14
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.14
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.11
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.09
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.09
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.08
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.06
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.06
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.06
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.05
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.04
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.03

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.96  E-value=3e-27  Score=183.64  Aligned_cols=205  Identities=35%  Similarity=0.641  Sum_probs=137.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      +.....+|+|+|++|+|||||+|+|+|...+..+......|....... ....+..+.++||||+.+.........+++.
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS-SSWKETELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-EEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-EEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence            344568999999999999999999999877544432223444433333 2356778999999999987766666667777


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ..+....+++|++++|++++ +++..+..++..+...++....+|+++|+||+|....  ..+.+++.. ....++++.+
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~  179 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMD  179 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHH
Confidence            87777778999999999997 7777888888888877765444589999999999876  777777764 2446888999


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSL  225 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~  225 (228)
                      .|...++.++.... ++....++.+|++.+.+++.++++.+|.+++|.+.+
T Consensus       180 ~~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e  229 (239)
T 3lxx_A          180 IFGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE  229 (239)
T ss_dssp             HHSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred             HcCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence            99999888877643 345568999999999999999999999999987654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.93  E-value=1.6e-23  Score=164.53  Aligned_cols=205  Identities=30%  Similarity=0.547  Sum_probs=149.1

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .+..+..+|+|+|++|||||||+|.|++...+.........|....... ....+..+.++||||+.+.........+.+
T Consensus        17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ-GSWGNREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE-EEETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE-EEeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            3455668999999999999999999999875433322222333333222 335677899999999987766555554566


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe-CCCCCccchhhHHHHhhccCCchHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ...+....+.+|++++|++++ +++..+...++.+...++....+|.++++| |+|...   ..+..++.......++++
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHH
Confidence            666666678899999999998 588887777788887776543346777777 999874   456666665455567778


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTS  224 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~  224 (228)
                      .+.|...+..++. +..||.++.+++++++.|.+++..+.+..|.++++.+.
T Consensus       172 ~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~  222 (260)
T 2xtp_A          172 VAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLI  222 (260)
T ss_dssp             HHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC
T ss_pred             HHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHH
Confidence            8888877655555 77889999999999999999999987777877776554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.85  E-value=1.8e-20  Score=149.93  Aligned_cols=166  Identities=18%  Similarity=0.173  Sum_probs=113.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+|+|++|+|||||+|+|+|....  .....+.|+...........+..+.++||||+.+...   .+.+.+.....
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~--ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~---~l~~~~~~~~~   81 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVA--PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD---ALGEFMDQEVY   81 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCS--CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS---HHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcee--eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh---HHHHHHHHHHH
Confidence            357999999999999999999998752  2223333444333333335667899999999886432   33333444455


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhh-HHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      .....+|++++|+|++.+++..+...++.+..... .  .|+++++||+|....  .. +...++.        +   +.
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~  145 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP  145 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred             HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence            56678999999999987888887666555554321 2  389999999999765  44 4333332        1   11


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                           +...++.||.++.++++|++.|.+.+++
T Consensus       146 -----~~~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          146 -----EAEPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             -----TSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             -----cCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence                 1123456888899999999999887765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.85  E-value=1.8e-20  Score=150.49  Aligned_cols=176  Identities=16%  Similarity=0.219  Sum_probs=118.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      ++.++...|+|+|.+|||||||+|+|+|...  ........|+........... +..+.++||||+.+.... ....+.
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~--~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~-~~l~~~   81 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS-DVLGHS   81 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCC--SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTT-CHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCc--cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccc-hhHHHH
Confidence            3444457999999999999999999999875  222333444444444444455 778999999999875521 223344


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccccEEEEEeCCCCC-ccchhhHHHHhhccCCchHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~-~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +..........+|++++|+|++...+..+... ++.+..   ..  .|+++|+||+|.. ..  ..+...++.       
T Consensus        82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~--~pvilV~NK~Dl~~~~--~~~~~~~~~-------  147 (308)
T 3iev_A           82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LN--KPVIVVINKIDKIGPA--KNVLPLIDE-------  147 (308)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GC--CCEEEEEECGGGSSSG--GGGHHHHHH-------
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cC--CCEEEEEECccCCCCH--HHHHHHHHH-------
Confidence            44444455567899999999997888887765 555443   12  3899999999987 44  444444433       


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                       +.+.+..    +...++.||.++.++++|++.|.+.+++.
T Consensus       148 -l~~~~~~----~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          148 -IHKKHPE----LTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             -HHHHCTT----CCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             -HHHhccC----CCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence             3333321    11234557888899999999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.84  E-value=6.3e-20  Score=140.50  Aligned_cols=180  Identities=12%  Similarity=0.138  Sum_probs=113.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .....+|+|+|.+|+|||||+|+|++.............|............+..+.++||||+.+........ ..+..
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~  104 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAK-AHWEQ  104 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHH-HHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhH-HHHHH
Confidence            34567999999999999999999999862111111122333333333332445679999999987654433221 22222


Q ss_pred             HH---hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           96 CL---GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        96 ~~---~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      .+   -.....+|++++++++..+++..+..+++.+..   ..  .|+++|+||+|....  ..+...+..     +.+.
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~---~~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~  172 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP---TG--KPIHSLLTKCDKLTR--QESINALRA-----TQKS  172 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG---GC--CCEEEEEECGGGSCH--HHHHHHHHH-----HHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh---cC--CCEEEEEeccccCCh--hhHHHHHHH-----HHHH
Confidence            22   122456899999999988888877777766654   12  379999999999876  555544443     3333


Q ss_pred             HHhc-----CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          173 LQLC-----DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       173 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      ....     ...+    ..+..||.++.++++|++.|.+.+++..
T Consensus       173 l~~~~~~~~~~~~----~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          173 LDAYRDAGYAGKL----TVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHHHHHTCCSCE----EEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             HHhhhhcccCCCC----eEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            3221     1111    1233467788999999999999887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.81  E-value=2.5e-18  Score=128.73  Aligned_cols=172  Identities=15%  Similarity=0.201  Sum_probs=104.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .....+|+|+|++|+|||||+|.|++.............|.......   . +..+.++||||+.+....... ...+..
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~~~l~Dt~G~~~~~~~~~~-~~~~~~   94 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---I-NDELHFVDVPGYGFAKVSKSE-REAWGR   94 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE---E-TTTEEEEECCCBCCCSSCHHH-HHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE---E-CCcEEEEECCCCCccccCHHH-HHHHHH
Confidence            44568999999999999999999998763211111112232222221   1 336899999998776544322 122222


Q ss_pred             HHh---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           96 CLG---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        96 ~~~---~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      .+.   .....+|++++++|++.+.+..+...++++...   .  .|+++|+||+|....  +++......     +.+.
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~  162 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY---G--IPVIVIATKADKIPK--GKWDKHAKV-----VRQT  162 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG--GGHHHHHHH-----HHHH
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh--HHHHHHHHH-----HHHH
Confidence            222   223466999999999988888887666665431   2  279999999999876  655543333     3322


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .......     ..+..|+.++.+++++++.|.+.++
T Consensus       163 ~~~~~~~-----~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          163 LNIDPED-----ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HTCCTTS-----EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HcccCCC-----ceEEEEccCCCCHHHHHHHHHHHhc
Confidence            2111111     1223567778999999999887764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.80  E-value=3.2e-18  Score=127.92  Aligned_cols=173  Identities=16%  Similarity=0.161  Sum_probs=109.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      +.....+|+|+|++|+|||||+|.|++........ ....|......    ..+..+.++||||+.......... ..+.
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~-~~~~   92 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-TPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKER-MLWK   92 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-SCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHH-HHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccC-CCCCccCeEEE----EECCcEEEEECCCCccccCChhhH-HHHH
Confidence            34455799999999999999999999886321111 11222222211    124458899999977654332221 2222


Q ss_pred             HH---HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           95 KC---LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        95 ~~---~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ..   .......++++++++++....+......++.+...   .  .|+++|+||+|....  .......+.     +.+
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~  160 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---N--IPFTIVLTKMDKVKM--SERAKKLEE-----HRK  160 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG--GGHHHHHHH-----HHH
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---C--CCEEEEEEChhcCCh--HHHHHHHHH-----HHH
Confidence            22   22233567999999999877787777766666543   2  379999999999865  555554444     444


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ........     ..+..||.++.+++++++.|.+.+.+
T Consensus       161 ~~~~~~~~-----~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          161 VFSKYGEY-----TIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             HHHSSCCS-----CEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHhhcCCC-----ceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            44332211     22345777889999999999888764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=1.8e-18  Score=135.79  Aligned_cols=142  Identities=25%  Similarity=0.317  Sum_probs=97.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +..+|+|+|.+|+|||||+|+|++......... ...|....... ....+..+.++||||+.+.....+...+.+.+++
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~-~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF-QAEGLRPVMVS-RTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSS-CC-CCCCEEEE-EEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcceeeEEEE-EEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            458999999999999999999999864222211 12222222222 2356778999999999876654444434444443


Q ss_pred             hhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090           98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~  163 (228)
                        ...++|++++|++++ .+++..+..+++.+...++....+|+++|+||+|........++++++.
T Consensus       113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~  177 (262)
T 3def_A          113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK  177 (262)
T ss_dssp             --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred             --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence              234789999998886 3577777888898888877655568999999999853322555555553

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.79  E-value=9.7e-18  Score=132.25  Aligned_cols=200  Identities=21%  Similarity=0.323  Sum_probs=120.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +..+|+++|.+|+|||||+|+|++......... ...|....... ....+..+.++||||+.+.........+.+..++
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~-~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVS-RSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEE-EEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEE-EeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            457999999999999999999998875222211 12222222222 2245678999999999776543333323333322


Q ss_pred             hhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                        ...++|++++|++++. +++..+..+++.+...++....+|+++|+||+|.......+++++++. ....+.+.++..
T Consensus       116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~  192 (270)
T 1h65_A          116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG  192 (270)
T ss_dssp             --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred             --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence              2357899999988763 577777788888887776543458999999999875421256555543 111222222211


Q ss_pred             C----------CeEEEeeCC--Cccc-------ccchHHHHHHHHHHHHHHHhcCCCCCChhhhh
Q 027090          177 D----------NRCVLFDNK--TKDE-------AKGTEQVRQLLSLVNSVIVQNGGQPYTDELKV  222 (228)
Q Consensus       177 ~----------~~~~~~~~~--~~~~-------~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~  222 (228)
                      .          -.+.+..+.  +...       .....-..+|++.|.+.+..++.....+....
T Consensus       193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~  257 (270)
T 1h65_A          193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLI  257 (270)
T ss_dssp             TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHH
T ss_pred             hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHh
Confidence            0          122222221  1100       01112356999999999999888776654443

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.79  E-value=1.3e-17  Score=128.28  Aligned_cols=184  Identities=15%  Similarity=0.079  Sum_probs=103.7

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .+.......+|+|+|.+|+|||||+|.|++......   ....++..............+.++||||..+........ .
T Consensus        22 ~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~   97 (228)
T 2qu8_A           22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ---SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNT-I   97 (228)
T ss_dssp             CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE---CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCH-H
T ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC---CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhh-H
Confidence            344445678999999999999999999998865311   122222222222222356779999999986543211110 0


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      +. ..+.......|++++|+|+++..+.....++.++..+.......|+++|+||+|+...  +.+......    ...+
T Consensus        98 ~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~  170 (228)
T 2qu8_A           98 EM-TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKL----LIKQ  170 (228)
T ss_dssp             HH-HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHH----HHHH
T ss_pred             HH-HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHH----HHHH
Confidence            01 1111223566999999999866554333333334333222112389999999998754  333221111    1233


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.......+    ..+..||.++.+++++++.|.+.+.+
T Consensus       171 ~~~~~~~~~----~~~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          171 ILDNVKNPI----KFSSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             HHHHCCSCE----EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCc----eEEEEecccCCCHHHHHHHHHHHHHH
Confidence            333322111    12345777889999999998887765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.77  E-value=2.6e-17  Score=123.45  Aligned_cols=175  Identities=14%  Similarity=0.075  Sum_probs=104.3

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      ++.+.....+|+|+|.+|||||||++.|++......   ....|........ ......+.++||||...          
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~----------   75 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---HITATVGYNVETF-EKGRVAFTVFDMGGAKK----------   75 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC-------CCCCCSSEEEEEE-EETTEEEEEEEECCSGG----------
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---ccccccceeEEEE-EeCCEEEEEEECCCCHh----------
Confidence            345666678999999999999999999998875221   1223333333332 25677899999999532          


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcc------ccccEEEEEeCCCCCccchhhHHHHhhcc
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKN------VFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~------~~~~~llv~~~~D~~~~~~~~~~~~~~~~  164 (228)
                       +..........+|++++|+|+++..+.... .++..+.......      ...|+++|+||+|+...  .....+.+. 
T Consensus        76 -~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-  151 (199)
T 4bas_A           76 -FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI-  151 (199)
T ss_dssp             -GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH-
T ss_pred             -HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH-
Confidence             122233456788999999999866555544 3443333221100      12389999999999765  444433332 


Q ss_pred             CCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                          +. +...+....+   ..+..||.++.+++++++.|.+.+.+..
T Consensus       152 ----~~-~~~~~~~~~~---~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          152 ----LD-LTTLMGDHPF---VIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             ----HT-HHHHHTTSCE---EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             ----hc-chhhccCCee---EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence                11 1111111111   1234577788999999999988887654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.77  E-value=2.2e-18  Score=137.93  Aligned_cols=166  Identities=16%  Similarity=0.213  Sum_probs=105.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCC-CCCCCcHHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~-~~~~~~~~~~~~~~~~~   97 (228)
                      ..+|+|+|++|+|||||+|+|+|.....  ......|+..............+.++||||+. ..   .....+.+....
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~   82 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAA   82 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence            4589999999999999999999987521  22223343333333333556779999999975 11   111111111122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc-cchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE-DHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++++++.. ++.++...++.+..   ..  .|+++++||+|... .  ..+...+..        +.+..
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~---~~--~P~ilvlNK~D~~~~~--~~~~~~l~~--------l~~~~  146 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE---GK--APVILAVNKVDNVQEK--ADLLPHLQF--------LASQM  146 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS---SS--SCEEEEEESTTTCCCH--HHHHHHHHH--------HHTTS
T ss_pred             HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh---cC--CCEEEEEECcccCccH--HHHHHHHHH--------HHHhc
Confidence            344578999999999986 88888755444331   12  38999999999876 3  344343332        22222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.     ...++.|+.++.++++|++.+...+++
T Consensus       147 ~~-----~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          147 NF-----LDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             CC-----SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             Cc-----CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            21     123445777789999999998887765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.76  E-value=1.4e-18  Score=127.93  Aligned_cols=164  Identities=19%  Similarity=0.147  Sum_probs=99.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ++.+|+|+|++|+|||||+|+|++.....  ......++..........++..+.++||||+.......+.  ..+... 
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~--~~~~~~-   77 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAI--VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVER--IGIERA-   77 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSC--CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHH--HHHHHH-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcce--eeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHH--HHHHHH-
Confidence            45799999999999999999999875321  1112222221111222245667899999998654321111  011111 


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ......+|++++++|++.+.+.....++..+.......  .|+++|+||+|+...  ..  .+ ..           . .
T Consensus        78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~--~~--~~-~~-----------~-~  138 (172)
T 2gj8_A           78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--TL--GM-SE-----------V-N  138 (172)
T ss_dssp             HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--CC--EE-EE-----------E-T
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcc--hh--hh-hh-----------c-c
Confidence            12345779999999998777766666666665543222  389999999997532  10  00 00           0 0


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      . .    ..+..||.++.+++++++.|.+.+..
T Consensus       139 ~-~----~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          139 G-H----ALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             T-E----EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             C-C----ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            0 0    12346888899999999998876654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.75  E-value=4e-17  Score=128.99  Aligned_cols=174  Identities=17%  Similarity=0.232  Sum_probs=94.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCC----CCCcceeeEeEeeee-eCC--cEEEEEeCCCCCCCCCCcHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~----~~~~t~~~~~~~~~~-~~~--~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      ....+|+|+|.+|+|||||+|+|++...+.....    ....|+......... .++  ..+.++||||+.+.....+.+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            3457899999999999999999998876433210    002222222222111 222  378999999997664433222


Q ss_pred             HHHH--------HHHHhh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090           90 GKEI--------VKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (228)
Q Consensus        90 ~~~~--------~~~~~~---------~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~  151 (228)
                       +.+        ..++..         ...++|+++++++.. ..+...+...++.+..    .  .|+++|+||+|...
T Consensus        86 -~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~--~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           86 -QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLT  158 (274)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----T--SCEEEEESSGGGSC
T ss_pred             -HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----c--CCEEEEEeccCCCC
Confidence             111        222211         123578999998765 3677777776665543    2  38999999999987


Q ss_pred             cchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .  .++....+.     +.+........      .+..++.++.++.++.+.|.+.++-
T Consensus       159 ~--~e~~~~~~~-----i~~~l~~~~i~------v~~~sa~~~~~~~~l~~~l~~~~p~  204 (274)
T 3t5d_A          159 P--EECQQFKKQ-----IMKEIQEHKIK------IYEFPETDDEEENKLVKKIKDRLPL  204 (274)
T ss_dssp             H--HHHHHHHHH-----HHHHHHHTTCC------CCCC-----------CHHHHHTCSE
T ss_pred             H--HHHHHHHHH-----HHHHHHHcCCe------EEcCCCCCChhHHHHHHHHhcCCCc
Confidence            6  666665554     44444433322      2234566778888998888776553

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.75  E-value=3.2e-17  Score=118.75  Aligned_cols=159  Identities=21%  Similarity=0.278  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+++|++|+|||||+|.|++........ ....+....... ....+..+.++||||........    ..+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGV-VETDRGRFLLVDTGGLWSGDKWE----KKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEE-EEETTEEEEEEECGGGCSSSSCC----HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEE-EEeCCceEEEEECCCCCCccchH----HHHHHHHHH
Confidence            589999999999999999999876321111 112222222222 22456689999999987643211    223333334


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+|++++++++..+++..+....+++...   .  .|+++|+||+|....  .+   .+.+        +.+ ..  
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~ilv~nK~Dl~~~--~~---~~~~--------~~~-~~--  134 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK---G--KPVILVATKVDDPKH--EL---YLGP--------LYG-LG--  134 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH---T--CCEEEEEECCCSGGG--GG---GCGG--------GGG-GS--
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc---C--CCEEEEEECcccccc--hH---hHHH--------HHh-CC--
Confidence            45678999999999977888776666655541   2  379999999998754  21   1111        111 11  


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                         ....+..|+.++.+++++++.+.+.+
T Consensus       135 ---~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          135 ---FGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             ---SCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ---CCCeEEEecccCCChHHHHHHHHHhC
Confidence               01345567888899999999887654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.74  E-value=1.8e-16  Score=116.70  Aligned_cols=168  Identities=16%  Similarity=0.168  Sum_probs=102.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .++..+|+|+|++|+|||||+|.|++.......  ....+........ ..++..+.++||||.......          
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~----------   71 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQV-TVNDKKITFLDTPGHEAFTTM----------   71 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEE-EETTEEEEESCCCSSSSSSCS----------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEE-EeCCceEEEEECCCCHHHHHH----------
Confidence            345679999999999999999999987653221  1122222222222 245667899999996543321          


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                       .......+|++++|+++++.........+..+.   ...  .|+++|+||+|+.....+++...+..     ...+...
T Consensus        72 -~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~  140 (178)
T 2lkc_A           72 -RARGAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEE  140 (178)
T ss_dssp             -CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTT
T ss_pred             -HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhH
Confidence             123456789999999998666665555444332   222  38999999999875311233322222     0000000


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ....+    ..+..||.++.+++++++.|.+.+...
T Consensus       141 ~~~~~----~~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          141 WGGDT----IFCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             TTSSE----EEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             cCCcc----cEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence            00001    123457788899999999998887764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.74  E-value=7e-17  Score=118.11  Aligned_cols=164  Identities=14%  Similarity=0.072  Sum_probs=100.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+..+|+|+|++|+|||||+|.|++.....     ...|........ ......+.++||||....           ...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~~   67 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETV-TYKNLKFQVWDLGGLTSI-----------RPY   67 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEE-EETTEEEEEEEECCCGGG-----------GGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEE-EECCEEEEEEECCCChhh-----------hHH
Confidence            345799999999999999999998766421     122332222222 245778999999995321           122


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|+|+++..+..... ++..+..... ....|+++++||+|+...  .........     +.  ...
T Consensus        68 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~  137 (171)
T 1upt_A           68 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPA  137 (171)
T ss_dssp             GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGG
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC--CCHHHHHHH-----hC--chh
Confidence            334456889999999998665655433 3333222111 122489999999998765  333322221     00  011


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +...-+   ..+..|+.++.+++++++.+.+.+.+
T Consensus       138 ~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          138 LKDRKW---QIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             CTTSCE---EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccCCce---EEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            111111   12345778889999999999888765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.74  E-value=1.4e-17  Score=124.68  Aligned_cols=168  Identities=12%  Similarity=0.083  Sum_probs=102.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      ......+|+|+|.+|+|||||+|.|++...    ......|............+.  .+.++||||...           
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------   83 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEI----PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEE-----------   83 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCC----CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHH-----------
Confidence            344557999999999999999999998764    222233333332222223333  469999999322           


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +..........+|++++|+++++.-+...  ..++..+......   .|+++|+||+|+.......+.       .....
T Consensus        84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~~~~~~~-------~~~~~  153 (194)
T 3reg_A           84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRKDGSDDVT-------KQEGD  153 (194)
T ss_dssp             GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCCTTTTCCC-------HHHHH
T ss_pred             HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccCCCCccc-------HHHHH
Confidence            22223345568899999999986655555  3456666554332   389999999998642001110       01122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      ++.+.....     ..+..||.++.+++++++.+.+.+.++.
T Consensus       154 ~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          154 DLCQKLGCV-----AYIEASSVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHTCS-----CEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred             HHHHhcCCC-----EEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence            233332221     1234577888999999999988877653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.74  E-value=7.5e-18  Score=131.76  Aligned_cols=161  Identities=16%  Similarity=0.170  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~~~~   97 (228)
                      .+|+|+|.+|||||||+|+|+|..... +.. .+.|.+..... ....+..+.++||||..+......  ...+.+.+..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v-~~~-pg~Tv~~~~~~-~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRV-GNW-PGVTVEKKTGE-FLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEE-EEC-TTSSSEEEEEE-EEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCc-cCC-CCceEEEEEEE-EEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            489999999999999999999986422 211 23333333222 234667899999999987653210  1111222211


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                       .....+|++++|+|+++     ..+.+.+...+....  .|+++++||+|....  ..+..        ....+.+..+
T Consensus        79 -~~~~~~d~vi~VvDas~-----~~~~~~l~~~l~~~~--~pvilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg  140 (256)
T 3iby_A           79 -VIDLEYDCIINVIDACH-----LERHLYLTSQLFELG--KPVVVALNMMDIAEH--RGISI--------DTEKLESLLG  140 (256)
T ss_dssp             -HHHSCCSEEEEEEEGGG-----HHHHHHHHHHHTTSC--SCEEEEEECHHHHHH--TTCEE--------CHHHHHHHHC
T ss_pred             -HhhCCCCEEEEEeeCCC-----chhHHHHHHHHHHcC--CCEEEEEEChhcCCc--CCcHH--------HHHHHHHHcC
Confidence             11257899999999983     122223333332222  389999999998654  32211        1222333222


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      .      ..+..||.++.++++|++.|.+.
T Consensus       141 ~------~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 C------SVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             S------CEEECBGGGTBSHHHHHHHHHTC
T ss_pred             C------CEEEEECCCCCCHHHHHHHHHhh
Confidence            1      33456888889999999999887

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.74  E-value=5.2e-17  Score=123.63  Aligned_cols=171  Identities=19%  Similarity=0.101  Sum_probs=94.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|.+|+|||||++.|++.....    ....|+..........++  ..+.++||||...           +.
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~   96 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE----SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD-----------YD   96 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-----------CCCCCEEEEEEEEETTEEEEEEEEEC------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCC----CCCCccceeEEEEEEECCEEEEEEEEECCCchh-----------hh
Confidence            345799999999999999999999876421    112222222211112233  3589999999432           22


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----Cc
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PK  167 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~  167 (228)
                      .........+|++++|+|+++..+....  .++..+......   .|+++|+||+|+...  ......+....     ..
T Consensus        97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~  171 (214)
T 2j1l_A           97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK---VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYH  171 (214)
T ss_dssp             --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSS---CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHH
T ss_pred             HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhhcc--chhhhhhcccccCcccHH
Confidence            2223345678999999999855554443  355555544322   389999999999765  54444332111     11


Q ss_pred             hHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      ...++.+.....     ..+..||.++.+++++++.|.+.+.+..
T Consensus       172 ~~~~~~~~~~~~-----~~~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          172 RGQEMARSVGAV-----AYLECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             HHHHHHHHTTCS-----EEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhcCCC-----EEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            223333333321     1134577788999999999988877643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.74  E-value=1.5e-16  Score=118.16  Aligned_cols=165  Identities=13%  Similarity=0.046  Sum_probs=102.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+..+|+|+|++|+|||||+|.+++...  ..   ...|......... .+...+.++||||..           ++...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~---~~~t~~~~~~~~~-~~~~~~~~~Dt~G~~-----------~~~~~   78 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDV--DT---ISPTLGFNIKTLE-HRGFKLNIWDVGGQK-----------SLRSY   78 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCC--SS---CCCCSSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCC--Cc---ccccCccceEEEE-ECCEEEEEEECCCCH-----------hHHHH
Confidence            4568999999999999999999998762  11   1223332222222 457789999999942           23333


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .....+.+|++++|+|++++.+.... .++..+..... ....|+++++||+|+...  .......+...       ...
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~~~-------~~~  148 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEALE-------LDS  148 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------GGG
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHHhC-------hhh
Confidence            44556789999999999866555443 23333332211 112489999999998765  33333222100       011


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +....+   ..+..|+.++.+++++++.+.+.+.++
T Consensus       149 ~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          149 IRSHHW---RIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CCSSCE---EEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ccCCce---EEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            111111   123457778899999999999988874

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=121.58  Aligned_cols=163  Identities=17%  Similarity=0.168  Sum_probs=99.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .....+|+|+|++|+|||||+|.|++....  .....+.+.+....... ..+  ..+.++||||.....          
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------   72 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVE-INGEKVKLQIWDTAGQERFR----------   72 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEE-ETTEEEEEEEEEETTGGGCS----------
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCC--CccCCCceeEEEEEEEE-ECCEEEEEEEEcCCCchhhh----------
Confidence            345579999999999999999999987652  12222333333322222 334  468999999943322          


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                       .........+|++++|+++++..+.... .++..+.....   ..|+++|+||+|+...  ..+...       ....+
T Consensus        73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~-------~~~~~  139 (181)
T 3tw8_B           73 -TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPER--KVVETE-------DAYKF  139 (181)
T ss_dssp             -SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGG--CCSCHH-------HHHHH
T ss_pred             -hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchh--cccCHH-------HHHHH
Confidence             1122345678999999999855444443 34454544332   2389999999998654  222110       11222


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .......      .+..|+.++.+++++++.|.+.+.+
T Consensus       140 ~~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          140 AGQMGIQ------LFETSAKENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             HHHHTCC------EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHcCCe------EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            2222222      2345777889999999999887765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.73  E-value=9.8e-17  Score=119.21  Aligned_cols=161  Identities=19%  Similarity=0.164  Sum_probs=95.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      +..+|+|+|++|+|||||+|.|++...    ......|+...........+.  .+.++||||.......       ...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~   71 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHF----VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------RDQ   71 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSC----CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT-------HHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH-------HHH
Confidence            347999999999999999999998764    222223332222222223443  3778999995543221       112


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ++    ..+|++++++++++.-+.... .++..+...... ...|+++++||+|+...  ........        ++.+
T Consensus        72 ~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~--~~~~~~~~--------~~~~  136 (189)
T 4dsu_A           72 YM----RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSR--TVDTKQAQ--------DLAR  136 (189)
T ss_dssp             HH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSC--SSCHHHHH--------HHHH
T ss_pred             HH----hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCccc--ccCHHHHH--------HHHH
Confidence            22    245999999999854444333 344545443322 22489999999998754  22222222        2333


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .....      .+..||.++.+++++++.|.+.+.+
T Consensus       137 ~~~~~------~~~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          137 SYGIP------FIETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             HHTCC------EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCe------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            32222      2345777889999999998887765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.73  E-value=6.1e-17  Score=118.29  Aligned_cols=162  Identities=15%  Similarity=0.107  Sum_probs=96.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ...+|+|+|++|+|||||+|.+++.......  ....+......... .++  ..+.++||||...           +..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~   70 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLN-IGGKRVNLAIWDTAGQER-----------FHA   70 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--CCCCSCEEEEEEEE-SSSCEEEEEEEECCCC----------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCC--CCccceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------hhh
Confidence            3479999999999999999999977642111  11222222211211 222  3578899999432           222


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........+|++++|+++++..+.... .++..+.......  .|+++++||+|+...  +.+..       ....++.+
T Consensus        71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~  139 (170)
T 1z08_A           71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKE--RHVSI-------QEAESYAE  139 (170)
T ss_dssp             --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGG--CCSCH-------HHHHHHHH
T ss_pred             hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccc--cccCH-------HHHHHHHH
Confidence            334456788999999999854444433 3555555544333  389999999998653  22110       01223333


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .....+      +..||.++.+++++++.|.+.+.+
T Consensus       140 ~~~~~~------~~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          140 SVGAKH------YHTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             HTTCEE------EEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             HcCCeE------EEecCCCCCCHHHHHHHHHHHHhh
Confidence            333222      235777889999999998877654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.73  E-value=2.5e-16  Score=114.44  Aligned_cols=161  Identities=17%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|++|+|||||+|.+++.....    ....+............+  ..+.++||||.....       .....+
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~   71 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIE----KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRDLY   71 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcc----cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHH
Confidence            3689999999999999999999765421    112222222111122333  348899999954321       111222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      +    ...|++++++++.+..+.... .++..+...... ...|+++++||+|+...  +++...       ...++.+.
T Consensus        72 ~----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~  137 (167)
T 1kao_A           72 I----KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESE--REVSSS-------EGRALAEE  137 (167)
T ss_dssp             H----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred             h----ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccc--ccCCHH-------HHHHHHHH
Confidence            2    345999999999854444332 344444443321 12489999999998654  322110       11222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...      ..+..|+.++.+++++++.|.+.+.+
T Consensus       138 ~~~------~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          138 WGC------PFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             HTS------CEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCC------CEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            221      22345778889999999999887754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.72  E-value=2.8e-16  Score=116.12  Aligned_cols=166  Identities=17%  Similarity=0.150  Sum_probs=99.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      .+..+|+|+|++|+|||||+|.|++...    ......|...........++  ..+.++||||.......         
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------   70 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQF----VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF---------   70 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSC----CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC---------
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCC----CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH---------
Confidence            3457999999999999999999996654    12222333322222222344  35789999996654221         


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                        .......+|++++++++++.-+.... .++..+....... ..|+++|+||+|+...  ..+..       ....++.
T Consensus        71 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~--~~~~~-------~~~~~~~  138 (181)
T 3t5g_A           71 --PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHME--RVISY-------EEGKALA  138 (181)
T ss_dssp             --CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT--CCSCH-------HHHHHHH
T ss_pred             --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECccchhc--ceecH-------HHHHHHH
Confidence              11234578999999999854444443 2444444433221 2389999999998643  22211       0122233


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      +.....      .+..||.++.+++++++.+.+.+....+
T Consensus       139 ~~~~~~------~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          139 ESWNAA------FLESSAKENQTAVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             HHTTCE------EEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred             HHhCCc------EEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            333222      2345778889999999999888877543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.72  E-value=5.8e-17  Score=136.17  Aligned_cols=166  Identities=19%  Similarity=0.221  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+|+|++|+|||||+|.|++....  .+...+.++.........+.+..+.++||||+.....  ....+.+......
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~--~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKA--IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ--DIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGG--GCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCc--eecCCCCCccceeeEEEEECCeEEEEEECCCcccccc--chHHHHHHHHHHH
Confidence            37999999999999999999987641  1222233333333333346777899999999875311  1111233333444


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ..+.+|++++|+|+..+++..+....+++...     .+|+++|+||+|....  .  ....       ..++... .  
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~~--~--~~~~-------~~~~~~l-g--  138 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLRE--F--EREV-------KPELYSL-G--  138 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHHH--H--HHHT-------HHHHGGG-S--
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc--c--HHHH-------HHHHHhc-C--
Confidence            55688999999999888888776655555432     2379999999997532  1  1111       0111111 1  


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                         +...+..||.++.++.+|++.|.+.+++.
T Consensus       139 ---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          139 ---FGEPIPVSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             ---SCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ---CCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence               11234578899999999999999888764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.72  E-value=7.3e-17  Score=120.29  Aligned_cols=165  Identities=14%  Similarity=0.054  Sum_probs=97.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ++..+|+|+|..|+|||||+|.|++....    .....|........ ......+.++||||..           ++...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~-----------~~~~~   83 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFN----EDMIPTVGFNMRKI-TKGNVTIKLWDIGGQP-----------RFRSM   83 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCC----CSCCCCCSEEEEEE-EETTEEEEEEEECCSH-----------HHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCC----CccCCCCceeEEEE-EeCCEEEEEEECCCCH-----------hHHHH
Confidence            34578999999999999999999977642    11223333333322 2457789999999932           12222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|+|+++.-+.... .++..+..... ....|+++|+||+|+...  .......+...       ...
T Consensus        84 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~-------~~~  153 (188)
T 1zd9_A           84 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA--LDEKELIEKMN-------LSA  153 (188)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHHTT-------GGG
T ss_pred             HHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC--CCHHHHHHHhC-------hhh
Confidence            22334678999999999855454443 23333322111 122489999999998754  33222222100       011


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.....   ..+..||.++.+++++++.|.+.+.+
T Consensus       154 ~~~~~~---~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          154 IQDREI---CCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             CCSSCE---EEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             hccCCe---eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            111111   12345778889999999998876654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.72  E-value=1.3e-16  Score=118.88  Aligned_cols=162  Identities=19%  Similarity=0.128  Sum_probs=94.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      +..+|+++|.+|+|||||+|.|++.....    ....|+...........+  ..+.++||||...           +..
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~   84 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD----EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-----------YSA   84 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCcc----ccCCccceEEEEEEEECCEEEEEEEEECCChHH-----------HHH
Confidence            34789999999999999999999875421    112222222222222333  3488999999432           222


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .........|+++++++++...+.... .++..+...... ...|+++++||+|+...  ......        ..++.+
T Consensus        85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~  153 (190)
T 3con_A           85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTR--TVDTKQ--------AHELAK  153 (190)
T ss_dssp             -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHH
T ss_pred             HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCcc--cCCHHH--------HHHHHH
Confidence            233445678999999999854444433 345555444321 12389999999998653  211111        222222


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ...-      ..+..|+.++.+++++++.|.+.+.+.
T Consensus       154 ~~~~------~~~~~Sa~~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          154 SYGI------PFIETSAKTRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             HHTC------CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HcCC------eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            2221      223457777899999999998877663

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.72  E-value=6e-17  Score=119.56  Aligned_cols=170  Identities=16%  Similarity=0.100  Sum_probs=93.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee--eCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .....+|+|+|++|+|||||+|.|++......  .....+.+........  .....+.++||||..           .+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~~   71 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ--YKATIGADFLTKEVTVDGDKVATMQVWDTAGQE-----------RF   71 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT--C---CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCccceEEEEEEEEEcCCcEEEEEEEECCCCh-----------Hh
Confidence            34568999999999999999999998764211  1112222222222221  123468999999932           22


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhC--ccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~--~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ..........+|++++|+++++..+.... .++..+.....  .....|+++++||+|+...  ....      ......
T Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~v------~~~~~~  143 (182)
T 1ky3_A           72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES--KKIV------SEKSAQ  143 (182)
T ss_dssp             -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--GCCS------CHHHHH
T ss_pred             hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc--cccC------CHHHHH
Confidence            23333456788999999999854444333 34555544432  0122389999999998543  2100      000122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ++.+.....     ..+..|+.++.+++++++.|.+.+.++
T Consensus       144 ~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          144 ELAKSLGDI-----PLFLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHTTSC-----CEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCC-----eEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            233211111     123356777899999999998776653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.72  E-value=1.6e-16  Score=118.89  Aligned_cols=167  Identities=15%  Similarity=0.171  Sum_probs=96.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .+.....+|+|+|.+|+|||||+|.|++.....  ......+.+....... .++  ..+.++||||...       ...
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-------~~~   90 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE--ACKSTVGVDFKIKTVE-LRGKKIRLQIWDTAGQER-------FNS   90 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEE-ETTEEEEEEEEEECCSGG-------GHH
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCc--CCCCccceeEEEEEEE-ECCeEEEEEEEeCCCcHH-------HHH
Confidence            344456789999999999999999999876421  1122233333222222 233  3689999999432       112


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ....++    ..+|++++|+|+++..+.... .++..+.......  .|+++|+||+|+...  +.+..       ....
T Consensus        91 ~~~~~~----~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~--~~v~~-------~~~~  155 (192)
T 2il1_A           91 ITSAYY----RSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REITR-------QQGE  155 (192)
T ss_dssp             HHHHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHH
T ss_pred             HHHHHh----cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc--cccCH-------HHHH
Confidence            222222    356999999999855555443 3455555443322  389999999998654  32210       0122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ++.+......     .+..||.++.+++++++.|.+.+.+
T Consensus       156 ~~~~~~~~~~-----~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          156 KFAQQITGMR-----FCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             HHHHTSTTCE-----EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCe-----EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2333221111     1245777889999999998877754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.72  E-value=2.8e-16  Score=118.32  Aligned_cols=167  Identities=19%  Similarity=0.175  Sum_probs=98.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee--eCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      +..+..+|+|+|.+|+|||||+|.|++....    .....|..........  .....+.++||||.......       
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------   88 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFS----EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-------   88 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCC----SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-------
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-------
Confidence            4456789999999999999999999987652    2222333322222111  23456899999996543321       


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                          .......+|++++|+++++.-+.... .++..+...... ...|+++|+||+|+...  ..+...       ....
T Consensus        89 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~v~~~-------~~~~  154 (201)
T 3oes_A           89 ----PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPE--REVQAV-------EGKK  154 (201)
T ss_dssp             ----CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG--CCSCHH-------HHHH
T ss_pred             ----HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccc--cccCHH-------HHHH
Confidence                22344678999999999854444333 244444333221 12489999999998754  322110       1122


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      +.......      .+..||.++.+++++++.|.+.+.+..
T Consensus       155 ~~~~~~~~------~~~~Sa~~~~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          155 LAESWGAT------FMESSARENQLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             HHHHHTCE------EEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhCCe------EEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            33332222      234577888999999999988887643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.72  E-value=2.5e-16  Score=117.39  Aligned_cols=168  Identities=17%  Similarity=0.104  Sum_probs=100.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      .......+|+|+|++|+|||||+|.|++......  .....+.+........ .....+.++||||.......       
T Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------   87 (189)
T 2gf9_A           17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI-------   87 (189)
T ss_dssp             TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-------
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCC--cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-------
Confidence            3334457999999999999999999998764211  1112222222222111 12346899999996543221       


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                          .......+|++++|+++++..+.... .++..+.......  .|+++|+||+|+...  +.+..       ....+
T Consensus        88 ----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~  152 (189)
T 2gf9_A           88 ----TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDE--RVVPA-------EDGRR  152 (189)
T ss_dssp             ----GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHH
T ss_pred             ----HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--cCCCH-------HHHHH
Confidence                22344678999999999854444333 3455554432222  389999999998654  22210       01222


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +.+...-.      .+..|+.++.+++++++.|.+.+.++
T Consensus       153 ~~~~~~~~------~~~~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          153 LADDLGFE------FFEASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHTCE------EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCe------EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            33332222      23457778899999999998877653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.71  E-value=4.6e-17  Score=128.61  Aligned_cols=166  Identities=16%  Similarity=0.160  Sum_probs=100.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcH--HHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~~~   96 (228)
                      ..+|+|+|.+|||||||+|+|+|.... .+.. .+.|.+...... ...+..+.++||||..+......  ...+.+.+.
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~-v~~~-~g~t~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQR-VGNW-AGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEE-EEEC-TTSSSEEEEEEE-ECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcc-cCCC-CCeeEEEEEEEE-EeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            378999999999999999999998742 2221 133333333222 24567899999999987653111  111122221


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      + ...+.+|++++|+|+++ + .....+...+...   .  .|+++++||+|....  ..+..        ....+.+..
T Consensus        80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~---~--~p~ivv~NK~Dl~~~--~~~~~--------~~~~l~~~l  141 (274)
T 3i8s_A           80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL---G--IPCIVALNMLDIAEK--QNIRI--------EIDALSARL  141 (274)
T ss_dssp             H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH---T--CCEEEEEECHHHHHH--TTEEE--------CHHHHHHHH
T ss_pred             H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc---C--CCEEEEEECccchhh--hhHHH--------HHHHHHHhc
Confidence            1 12357899999999983 1 1222233333322   2  389999999998644  22211        122233322


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +.      ..+..||.++.++++|++.|.+.++..
T Consensus       142 g~------~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          142 GC------PVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             TS------CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             CC------CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            21      234567888999999999998877654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=1.2e-16  Score=117.85  Aligned_cols=165  Identities=15%  Similarity=0.125  Sum_probs=96.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|++|+|||||+|.|++....... .....+......... ..+  ..+.++||||...           +.
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~-----------~~   74 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLD-VDGVKVKLQMWDTAGQER-----------FR   74 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEE-ETTEEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence            34579999999999999999999987642111 111222222211111 233  3689999999432           22


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .........+|++++|+++++..+... ..++..+.......  .|+++++||+|+...  +.+...       ...++.
T Consensus        75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~  143 (180)
T 2g6b_A           75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHE--RVVKRE-------DGEKLA  143 (180)
T ss_dssp             ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSC--CCSCHH-------HHHHHH
T ss_pred             HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcc--cccCHH-------HHHHHH
Confidence            223344567899999999985444443 34555555543322  389999999998754  321110       011222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +.....      .+..||.++.+++++++.+.+.+.+.
T Consensus       144 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          144 KEYGLP------FMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             HHHTCC------EEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             HHcCCe------EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            222211      23457778899999999998887653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.71  E-value=5.8e-16  Score=116.45  Aligned_cols=172  Identities=18%  Similarity=0.086  Sum_probs=98.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .......+|+|+|..|+|||||++.+++....    .....|+..........++.  .+.++||||.......      
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------   84 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP----TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL------   84 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH------
Confidence            34556689999999999999999999987641    12223332222222223343  5779999997554321      


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC----
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC----  165 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~----  165 (228)
                           .......+|++++|+|+++..+....  .++..+......   .|+++|+||+|+...  ......+....    
T Consensus        85 -----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v  154 (201)
T 2q3h_A           85 -----RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK---APIILVGTQSDLRED--VKVLIELDKCKEKPV  154 (201)
T ss_dssp             -----GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSS---SCEEEEEECGGGGGC--HHHHHHHHTTTCCCC
T ss_pred             -----hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECHhhhhc--hhhhhhhcccccccC
Confidence                 22345678999999999865555554  355556554332   389999999998754  32222221110    


Q ss_pred             -CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          166 -PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                       ......+.+.....     ..+..||.++.+++++++.|.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~-----~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          155 PEEAAKLLAEEIKAA-----SYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             CHHHHHHHHHHHTCS-----EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCc-----EEEEEecCCCCCHHHHHHHHHHHHhc
Confidence             11222333322220     11345777889999999988777655

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.71  E-value=8.5e-17  Score=126.88  Aligned_cols=166  Identities=20%  Similarity=0.212  Sum_probs=100.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+|+|++|||||||+|+|+|... ..+.. ...|.+..... ....+..+.++||||..+.......  ..+.... 
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~-~~~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~-   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNW-PGVTVEKKEGI-MEYREKEFLVVDLPGIYSLTAHSID--ELIARNF-   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCE-EEEEC-TTSSCEEEEEE-EEETTEEEEEEECCCCSCCCSSCHH--HHHHHHH-
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCC-CCeEEEeeEEE-EEECCceEEEEeCCCccccccCCHH--HHHHHHh-
Confidence            36899999999999999999999865 22221 22333333222 2346677999999998876543221  1111111 


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      .....+|++++++|+++ .   + +.+.+........ ..|+++++||+|+...  .....        ....+.+..+.
T Consensus        77 ~~~~~~d~vi~v~D~~~-~---~-~~~~~~~~~~~~~-~~p~ilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg~  140 (271)
T 3k53_A           77 ILDGNADVIVDIVDSTC-L---M-RNLFLTLELFEME-VKNIILVLNKFDLLKK--KGAKI--------DIKKMRKELGV  140 (271)
T ss_dssp             HHTTCCSEEEEEEEGGG-H---H-HHHHHHHHHHHTT-CCSEEEEEECHHHHHH--HTCCC--------CHHHHHHHHSS
T ss_pred             hhccCCcEEEEEecCCc-c---h-hhHHHHHHHHhcC-CCCEEEEEEChhcCcc--cccHH--------HHHHHHHHcCC
Confidence            12357899999999983 2   1 2222222222212 0389999999997643  22111        12233333332


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                            ..++.++.++.+++++++.+.+.+....
T Consensus       141 ------~~~~~Sa~~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          141 ------PVIPTNAKKGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             ------CEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred             ------cEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence                  2235677788999999999988887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.71  E-value=2.2e-17  Score=138.61  Aligned_cols=177  Identities=16%  Similarity=0.181  Sum_probs=105.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...+|+|+|++|+|||||+|+|++......  .....|+...........+..+.++||||+.......+.. +.+....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~--~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~-e~~~~~~  250 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIV--SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT-EKYSVLR  250 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEE--C---------CCEEEEETTEEEEETTHHHHTCBTTBCCCC-SHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceee--cCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchH-HHHHHHH
Confidence            457999999999999999999999864211  2222233322222223566779999999986543321111 1111110


Q ss_pred             -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 -GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 -~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                       ......+|++++|+|++++.+..+..++..+...   .  +|+++++||+|+.........+..+.     +.+.....
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~~  320 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQFL  320 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGGG
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc---C--CcEEEEEECccCCCcchHHHHHHHHH-----HHHhcccC
Confidence             0123456999999999988998888776665431   2  37999999999876411112222222     22222111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      ..     ...+..||.++.+++++++.+.+.+....
T Consensus       321 ~~-----~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          321 DY-----APILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             TT-----SCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             CC-----CCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            11     12244678888999999998888877643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=119.82  Aligned_cols=165  Identities=19%  Similarity=0.162  Sum_probs=100.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|++|+|||||+|+|++......  .....+.+....... ..+  ..+.++||||......          
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------   80 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT----------   80 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGCT----------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEE-ECCEEEEEEEEECCCcHhhhh----------
Confidence            3457899999999999999999998765221  122333333333222 333  4689999999433211          


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                       ........+|++++|+|+++..+... ..++..+.......  .|+++|+||+|+...  +.+...       ...++.
T Consensus        81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~--~~~~~~-------~~~~~~  148 (196)
T 3tkl_A           81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK--KVVDYT-------TAKEFA  148 (196)
T ss_dssp             -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT--CCSCHH-------HHHHHH
T ss_pred             -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--cccCHH-------HHHHHH
Confidence             11123356799999999985444333 34555555543333  389999999998754  322110       122233


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      ......+      +..||.++.+++++++.|.+.+.+..
T Consensus       149 ~~~~~~~------~~~Sa~~g~gv~~l~~~l~~~i~~~~  181 (196)
T 3tkl_A          149 DSLGIPF------LETSAKNATNVEQSFMTMAAEIKKRM  181 (196)
T ss_dssp             HHTTCCE------EEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHcCCcE------EEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            3333222      33567778999999999988877643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.71  E-value=3.6e-17  Score=120.46  Aligned_cols=163  Identities=16%  Similarity=0.116  Sum_probs=95.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|.+|+|||||+|.|++......  .....+.+....... ..  ...+.++||||.....       ....
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~-------~~~~   82 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIE-VSGQKIKLQIWDTAGQERFR-------AVTR   82 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--CTTSCCCCEEEEEEE-ETTEEEEEEEEECTTGGGTC-------HHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEE-ECCeEEEEEEEECCCChHhh-------hhHH
Confidence            3457999999999999999999998765211  111222222111111 22  2468999999943221       1222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .+    ...+|++++|+|++...+.... .++..+.......  .|+++++||+|+...  +.+..       ....++.
T Consensus        83 ~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~  147 (179)
T 1z0f_A           83 SY----YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQ--RDVTY-------EEAKQFA  147 (179)
T ss_dssp             HH----HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred             HH----hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc--cccCH-------HHHHHHH
Confidence            22    3466999999999855444433 3455555443222  389999999998643  22110       0122233


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +...-.      .+..|+.++.+++++++.+.+.+.+
T Consensus       148 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          148 EENGLL------FLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHTTCE------EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHcCCE------EEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            322211      2335777889999999988776643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.71  E-value=2.8e-16  Score=115.26  Aligned_cols=164  Identities=20%  Similarity=0.147  Sum_probs=90.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ...+|+|+|++|+|||||+|.|++........ ....+.  ...... .++  ..+.++||||....         +...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~--~~~~~~-~~~~~~~~~~~D~~g~~~~---------~~~~   69 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDV--YERTLT-VDGEDTTLVVVDTWEAEKL---------DKSW   69 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSE--EEEEEE-ETTEEEEEEEECCC----------------CH
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccce--eEEEEE-ECCEEEEEEEEecCCCCcc---------chhh
Confidence            34799999999999999999999876522211 111121  111111 233  35789999995431         0111


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .........|++++|+++++.-+.... .++..+..... ....|+++|+||+|+...  +.+...       ....+..
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~--~~v~~~-------~~~~~~~  139 (175)
T 2nzj_A           70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC--REVSVE-------EGRACAV  139 (175)
T ss_dssp             HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT--CCSCHH-------HHHHHHH
T ss_pred             hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc--cccCHH-------HHHHHHH
Confidence            122344577999999999855444443 34443433211 112489999999998754  322110       0112222


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .....      .+..||.++.+++++++.|.+.+..
T Consensus       140 ~~~~~------~~~~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          140 VFDCK------FIETSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             HHTSE------EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HcCCe------EEEEecCCCCCHHHHHHHHHHHHHH
Confidence            22211      2345777889999999999887765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.71  E-value=2e-16  Score=115.18  Aligned_cols=162  Identities=19%  Similarity=0.036  Sum_probs=86.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+|+|++|+|||||+|.|++.......  ....++...... .......+.++||||....           .....
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~-----------~~~~~   67 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIV-VDGEEASLMVYDIWEQDGG-----------RWLPG   67 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEE-ETTEEEEEEEEECC---------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC--CccccceEEEEE-ECCEEEEEEEEECCCCccc-----------hhhhh
Confidence            368999999999999999999987642111  111121111111 1112335789999994432           12222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ......|+++++++++++-+.... .++..+..... ....|+++|+||+|+...  ..+....       ...+.....
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~~~~~  137 (166)
T 3q72_A           68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS--REVSVDE-------GRACAVVFD  137 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS--CCSCHHH-------HHHHHHHTT
T ss_pred             hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc--cccCHHH-------HHHHHHHhC
Confidence            334577999999999855444433 24444433211 122489999999998754  3221111       112222222


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .      ..+..||.++.+++++++.|.+.+.+
T Consensus       138 ~------~~~~~Sa~~~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          138 C------KFIETSAALHHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             C------EEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             C------cEEEeccCCCCCHHHHHHHHHHHHHh
Confidence            1      12345778889999999999887765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.71  E-value=9.6e-17  Score=118.09  Aligned_cols=166  Identities=16%  Similarity=0.044  Sum_probs=98.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|++|+|||||+|.|++......  .....+.+....... ..+  ..+.++||||...           +.
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~   70 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLE-VDGHFVTMQIWDTAGQER-----------FR   70 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEE-ETTEEEEEEEEECCCCGG-----------GH
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEEEEE-ECCEEEEEEEEeCCCchh-----------hh
Confidence            3457899999999999999999997754211  111222222122222 233  3689999999322           22


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ..........|+++++++++...+... ..++..+......  ....|+++++||+|....  ....+.        ..+
T Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~  140 (177)
T 1wms_A           71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEE--------AQA  140 (177)
T ss_dssp             HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHH--------HHH
T ss_pred             hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc--ccCHHH--------HHH
Confidence            334455678899999999985444433 2355555544321  012389999999998643  211111        222


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +.+.....     ..+..|+.++.+++++++.+.+.+.+.
T Consensus       141 ~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          141 WCRDNGDY-----PYFETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHTTCC-----CEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHHhcCCc-----eEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            22211111     123457778899999999998877653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.71  E-value=1.2e-16  Score=120.37  Aligned_cols=170  Identities=15%  Similarity=0.084  Sum_probs=101.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      ......+|+|+|.+|+|||||++.+++......    ...|+..........++  ..+.++||||....          
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------   86 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV----YVPTVFENYIADIEVDGKQVELALWDTAGQEDY----------   86 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSS----CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGG----------
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcc----cCCcccceEEEEEEECCEEEEEEEEECCCchhH----------
Confidence            344567999999999999999999998765211    11122111111111233  36889999994321          


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----  165 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----  165 (228)
                       ..........+|++++|++++...+....  .++..+......   .|+++++||+|+...  ......+....     
T Consensus        87 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~  160 (201)
T 2gco_A           87 -DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN---VPIILVGNKKDLRQD--EHTRRELAKMKQEPVR  160 (201)
T ss_dssp             -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCC
T ss_pred             -HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEecHHhhcC--ccchhhhcccccCcCC
Confidence             12223345688999999999854444443  355555554322   389999999999765  44333332211     


Q ss_pred             CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .....++.+.....     ..+..||.++.+++++++.|.+.+.
T Consensus       161 ~~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          161 SEEGRDMANRISAF-----GYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             HHHHHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCc-----EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            11223333333221     1134577788999999998877653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.71  E-value=2.5e-17  Score=133.60  Aligned_cols=174  Identities=18%  Similarity=0.121  Sum_probs=105.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .|+|+|.+|||||||+|+|++.....   .....|+........... ...+.++||||+.+.......+...+.+.+. 
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i---~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~-  235 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKI---ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE-  235 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEE---SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCcc---ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH-
Confidence            58999999999999999999875321   122223222222222233 3679999999975422222222234444333 


Q ss_pred             ccCCccEEEEEEeCCC---CCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090          100 AKDGIHAFLVVFSVTN---RFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~---~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                         ..+++++|+|+++   +-+..+.. ++..+......-..+|+++|+||+|+...  ++.           +.++.+.
T Consensus       236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~-----------~~~l~~~  299 (342)
T 1lnz_A          236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEK  299 (342)
T ss_dssp             ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHH
T ss_pred             ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHH-----------HHHHHHH
Confidence               4599999999974   34444433 44444433211123489999999998754  321           1222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCCh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD  218 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~  218 (228)
                      ....    ...+..||.++.++++|++.|.+.+.+....++++
T Consensus       300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~y~  338 (342)
T 1lnz_A          300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPEFPLYD  338 (342)
T ss_dssp             CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred             hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence            2211    23456788899999999999999998876644443

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.71  E-value=2.5e-17  Score=120.27  Aligned_cols=161  Identities=14%  Similarity=0.138  Sum_probs=95.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|++|+|||||+|.|++......  ...+.+.+....... ..+  ..+.++||||.......           
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~~-----------   68 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRTI-----------   68 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSCC-----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEeCCCChhhhhh-----------
Confidence            36899999999999999999998764211  111222222222222 222  35889999995432211           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|++++...+... ..++..+.......  .|+++++||+|+...  ....+.        ..++.+.
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~  136 (170)
T 1g16_A           69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALAKE  136 (170)
T ss_dssp             CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTC--CSCHHH--------HHHHHHH
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcC--ccCHHH--------HHHHHHH
Confidence            1122346799999999985444333 34555555543222  389999999998543  211111        1222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ..-      ..+..|+.++.+++++++.|.+.+.++
T Consensus       137 ~~~------~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          137 LGI------PFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             HTC------CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cCC------eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            221      223457778899999999998888764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.71  E-value=4.4e-17  Score=137.49  Aligned_cols=180  Identities=17%  Similarity=0.185  Sum_probs=109.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .....+|+++|.+|+|||||+|+|++.......  ....|+...........+..+.++||||+.......+.. +.+..
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~--~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~-e~~~~  268 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS--NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT-EKYSV  268 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC--C------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCC-SHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccC--CCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHH-HHHHH
Confidence            345689999999999999999999987632222  222232222222222466789999999987644321111 11111


Q ss_pred             HHh-hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~-~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ... ...+.+|++++++|+..+++..+..++..+...   .  +|+++|+||+|+........+++.+.     +++...
T Consensus       269 ~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~---~--~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~  338 (456)
T 4dcu_A          269 LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ  338 (456)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCG
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEEChhcCCCchHHHHHHHHH-----HHHhcc
Confidence            111 123456999999999988888888877777652   2  37999999999875411223333332     222222


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      ....     ...+..||.++.+++++++.+.+.+.....
T Consensus       339 ~~~~-----~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          339 FLDY-----APILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             GGTT-----SCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             cCCC-----CCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            2111     123446788889999999999888876543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.71  E-value=4.4e-17  Score=123.13  Aligned_cols=167  Identities=17%  Similarity=0.089  Sum_probs=99.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      ..+..+|+|+|.+|+|||||++.+++...    ......|+..........++.  .+.++||||....           
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------   91 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY-----------   91 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCC----CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG-----------
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCC----CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh-----------
Confidence            34568999999999999999999997654    112222332222222223333  4669999995322           


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----C
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----P  166 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~  166 (228)
                      ..........+|++++|++++++.+....  .++..+......   .|+++|+||+|+...  ....+.+....     .
T Consensus        92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~  166 (204)
T 4gzl_A           92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY  166 (204)
T ss_dssp             TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSS---CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCH
T ss_pred             HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEechhhccc--hhhhhhhhccccccccH
Confidence            12233455688999999999865555554  355555554322   389999999998765  44433333211     1


Q ss_pred             chHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      .....+.+.....     ..+..||.++.+++++++.|.+.
T Consensus       167 ~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          167 PQGLAMAKEIGAV-----KYLECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             HHHHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCc-----EEEEeeCCCCCCHHHHHHHHHHH
Confidence            1122222222211     12345778889999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.71  E-value=6e-16  Score=114.03  Aligned_cols=168  Identities=17%  Similarity=0.154  Sum_probs=100.3

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .+.....+|+|+|.+|+|||||+|+|++...    ......|+..........++  ..+.++||||........     
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-----   74 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYF----VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR-----   74 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSC----CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH-----
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcC----ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH-----
Confidence            3455668999999999999999999998754    22223333333222222333  358899999966543211     


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                        ..++    ...|++++|+++++..+.... .++..+...... ...|+++|+||+|+...  +.+...       ...
T Consensus        75 --~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~--~~v~~~-------~~~  138 (181)
T 2fn4_A           75 --EQYM----RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQ--RQVPRS-------EAS  138 (181)
T ss_dssp             --HHHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGG--CCSCHH-------HHH
T ss_pred             --HHHH----hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHH-------HHH
Confidence              1122    245999999999854443332 344444333221 12389999999998754  332110       112


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      .+.......+      +..|+.++.+++++++.|.+.+.+..
T Consensus       139 ~~~~~~~~~~------~~~Sa~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          139 AFGASHHVAY------FEASAKLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHTTCEE------EECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCeE------EEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            2222222122      23567778999999999988877643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.71  E-value=1.1e-16  Score=121.88  Aligned_cols=174  Identities=12%  Similarity=0.049  Sum_probs=102.3

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      +.+.....+|+|+|..|+|||||++.|++....    .....|...........  ....+.++||||....        
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------   88 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYP----ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY--------   88 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG--------
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCC----CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH--------
Confidence            344556689999999999999999999987652    22222332222211112  2346899999994321        


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC---
Q 027090           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC---  165 (228)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~--~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~---  165 (228)
                         ..........+|++++|+|+++.-|...  ..|+..+.....+   .|+++|.||+|+...  ......+....   
T Consensus        89 ---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~  160 (214)
T 3q3j_B           89 ---DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS---TRVLLIGCKTDLRTD--LSTLMELSHQKQAP  160 (214)
T ss_dssp             ---TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTT---SEEEEEEECGGGGGC--HHHHHHHHHTTCCC
T ss_pred             ---HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccc--hhhhhhhcccccCc
Confidence               1223345568899999999986666655  3566777665432   389999999998753  21111111100   


Q ss_pred             --CchHHHHHHhcCCeEEEeeCCCcccccchHH-HHHHHHHHHHHHHhc
Q 027090          166 --PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQN  211 (228)
Q Consensus       166 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~  211 (228)
                        ......+.+.....     ..+..||.++.+ ++++++.+.+.+...
T Consensus       161 v~~~~~~~~~~~~~~~-----~~~e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          161 ISYEQGCAIAKQLGAE-----IYLEGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             CCHHHHHHHHHHHTCS-----EEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             cCHHHHHHHHHHcCCC-----EEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence              11122333332220     113357778888 999999998877664

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.71  E-value=2.3e-16  Score=117.01  Aligned_cols=163  Identities=16%  Similarity=0.104  Sum_probs=98.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|++|+|||||+|.|++.....  ......+.+....... ..+  ..+.++||||...           +.
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~   73 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD--DSNHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQER-----------FR   73 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCSEEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence            345799999999999999999999876521  1122223222222222 233  4689999999332           22


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .........+|++++|+++++..+.... .++..+.......  .|+++++||+|+...  +.+..       ....++.
T Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~  142 (186)
T 2bme_A           74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDAD--REVTF-------LEASRFA  142 (186)
T ss_dssp             HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc--cccCH-------HHHHHHH
Confidence            3344456788999999999854444333 3455444443322  389999999998643  22210       0122223


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +...-.+      +..|+.++.+++++++.+.+.+.+
T Consensus       143 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          143 QENELMF------LETSALTGENVEEAFVQCARKILN  173 (186)
T ss_dssp             HHTTCEE------EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCEE------EEecCCCCCCHHHHHHHHHHHHHH
Confidence            2222211      234677789999999988776654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.71  E-value=6.8e-16  Score=111.92  Aligned_cols=159  Identities=19%  Similarity=0.176  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|++|+|||||+|.|++.....    ....+............+  ..+.++||||.....       .....++
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~   72 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVD----ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYM   72 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCcc----ccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhh
Confidence            689999999999999999999875421    112222222221112233  347899999965432       1122222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .    ..|++++++++++..+... ..++..+...... ...|+++++||+|....  ......        ..++.+..
T Consensus        73 ~----~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~~~  137 (166)
T 2ce2_X           73 R----TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESRQ--------AQDLARSY  137 (166)
T ss_dssp             H----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHHHH
T ss_pred             c----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHHH--------HHHHHHHc
Confidence            2    4599999999985444333 3355555544321 12389999999998753  221111        22222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .-.      .+..++.++.+++++++.|.+.+.+
T Consensus       138 ~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          138 GIP------YIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             TCC------EEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCe------EEEecCCCCCCHHHHHHHHHHHHHh
Confidence            222      2335667789999999999887754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.70  E-value=2.4e-16  Score=117.45  Aligned_cols=165  Identities=18%  Similarity=0.096  Sum_probs=95.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      ......+|+|+|..|+|||||++.+++....    .....|+...........+  ..+.++||||......        
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------   84 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFI----SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------   84 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--------
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCC----cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--------
Confidence            3445589999999999999999999987641    2223333322221112233  3578999999654322        


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +..    ....+|++++|++++++-+.... .++..+...... ....|+++++||+|+...  +.+..       ....
T Consensus        85 ~~~----~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~-------~~~~  151 (187)
T 3c5c_A           85 CER----YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY--RQVTK-------AEGV  151 (187)
T ss_dssp             THH----HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG--CSSCH-------HHHH
T ss_pred             HHH----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc--CccCH-------HHHH
Confidence            111    22457999999999855455443 355555544311 012389999999998643  22210       0122


Q ss_pred             HHHHhcCCeEEEeeCCCcccc-cchHHHHHHHHHHHHHHHh
Q 027090          171 EILQLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~~  210 (228)
                      ++.+...-.      .+..|| .++.+++++++.|.+.+.+
T Consensus       152 ~~~~~~~~~------~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          152 ALAGRFGCL------FFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHTCE------EEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCc------EEEEeecCccccHHHHHHHHHHHHhh
Confidence            222222211      224567 6789999999998877653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.70  E-value=5.7e-17  Score=122.95  Aligned_cols=164  Identities=15%  Similarity=0.134  Sum_probs=96.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      +.....+|+|+|++|+|||||+|.|++......  .....+.+....... ..+  ..+.++||||.......       
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~-------   85 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVD-INGKKVKLQLWDTAGQERFRTI-------   85 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCS--SSCCCSCCEEEEEEE-ETTEEEEEEEECCTTGGGGTCC-------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHHH-------
Confidence            344568999999999999999999997764211  112222222222222 233  46899999994432211       


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                          .......+|++++|++++...+... ..++..+.......  .|+++|+||+|+...  ......        ..+
T Consensus        86 ----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~  149 (213)
T 3cph_A           86 ----TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEA  149 (213)
T ss_dssp             ----CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSC--CSCHHH--------HHH
T ss_pred             ----HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--ccCHHH--------HHH
Confidence                1122356799999999985444333 34555555543322  389999999998533  211111        122


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +......      ..+..++.++.+++++++.|.+.+.+
T Consensus       150 ~~~~~~~------~~~~~Sa~~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          150 LAKELGI------PFIESSAKNDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             HHHHHTC------CEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             HHHHcCC------EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2222221      22345677788999999888777665

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.70  E-value=7.1e-17  Score=119.22  Aligned_cols=164  Identities=20%  Similarity=0.164  Sum_probs=96.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ....+|+|+|++|+|||||+|.|++.......  ....+........... ....+.++||||....           ..
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~   76 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ--ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----------HS   76 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS--CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG-----------GG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcC--CCCceeEEEEEEEEECCEEEEEEEEeCCCChhh-----------hh
Confidence            44578999999999999999999987652221  1122222222221111 1346899999994321           11


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........+|++++|+|+++..+... ..++..+.......  .|+++++||+|+...  +.+..       ....++.+
T Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~--~~~~~-------~~~~~~~~  145 (181)
T 2efe_B           77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDA--RKVTA-------EDAQTYAQ  145 (181)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT--CCSCH-------HHHHHHHH
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc--ccCCH-------HHHHHHHH
Confidence            11223356799999999985555443 34555555443222  379999999998654  22110       01222333


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .....      .+..|+.++.+++++++.|.+.+.+
T Consensus       146 ~~~~~------~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          146 ENGLF------FMETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             HTTCE------EEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             HcCCE------EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            22222      2335677789999999998876654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=2.5e-16  Score=117.16  Aligned_cols=163  Identities=15%  Similarity=0.067  Sum_probs=97.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+..+|+|+|.+|+|||||+|.|++........     |......... .++..+.++||||.....           ..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~-----------~~   76 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIV-INNTRFLMWDIGGQESLR-----------SS   76 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-----CSCSSCEEEE-ETTEEEEEEECCC----C-----------GG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcC-----CCccceEEEE-ECCEEEEEEECCCCHhHH-----------HH
Confidence            345899999999999999999999776532211     2211112222 356789999999964321           11


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|+|+++.-+..... ++..+..... ....|+++|+||+|+...  ....+..+.         ...
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~---------~~~  144 (187)
T 1zj6_A           77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF---------LKL  144 (187)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH---------HTG
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHHH---------hCh
Confidence            112235779999999998666655543 3333333211 122489999999998754  222221111         111


Q ss_pred             --cC-CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          176 --CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       176 --~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                        .. ..+    ..+..||.++.+++++++.|.+.+....
T Consensus       145 ~~~~~~~~----~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          145 TSIKDHQW----HIQACCALTGEGLCQGLEWMMSRLKIRL  180 (187)
T ss_dssp             GGCCSSCE----EEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred             hhhcCCCc----EEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence              11 111    1234577888999999999988876643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=4.2e-17  Score=122.01  Aligned_cols=165  Identities=21%  Similarity=0.113  Sum_probs=96.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      .....+|+|+|++|+|||||+|.|++...... . .............. ......+.++||||.....           
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------   86 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHN-I-SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-----------   86 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT-C-CCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-----------
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCC-c-CCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-----------
Confidence            34457999999999999999999998764211 1 11122222111111 1234468999999943211           


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .........+|++++|+++++..+.... .++..+.......  .|+++|+||+|+...  +.+..       ....++.
T Consensus        87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~--~~v~~-------~~~~~~~  155 (192)
T 2fg5_A           87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDI--REVPL-------KDAKEYA  155 (192)
T ss_dssp             GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHH
T ss_pred             hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCH-------HHHHHHH
Confidence            1112233567999999999855554443 3555554433222  389999999998643  22110       0122233


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.....      .+..|+.++.+++++++.|.+.+.+
T Consensus       156 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          156 ESIGAI------VVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             HTTTCE------EEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             HHcCCE------EEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            322211      2345777889999999999887655

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.70  E-value=1.1e-16  Score=135.12  Aligned_cols=165  Identities=15%  Similarity=0.138  Sum_probs=88.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +.+|+|+|++|+|||||+|+|++....  .......|+..........++..+.++||||+.+.....+   ..-.....
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a--~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve---~~gi~~~~  307 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERA--IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIE---HEGIRRSR  307 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC-----------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHH---HHHHHHHH
Confidence            468999999999999999999987531  1222233333222222335677899999999865321111   11112223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      .....+|++++|+|++...+..+......+...+..   +|+++|+||+|+...  .....  +.     +.+. ..   
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~---~piIvV~NK~Dl~~~--~~~~~--~~-----l~~~-~~---  371 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHPA---AKFLTVANKLDRAAN--ADALI--RA-----IADG-TG---  371 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTT---SEEEEEEECTTSCTT--THHHH--HH-----HHHH-HT---
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCC---CCEEEEEECcCCCCc--cchhH--HH-----HHhc-CC---
Confidence            355789999999999977776332222212222232   389999999999765  43321  11     1111 01   


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                           ...+..||.++.++++|++.|.+.+.
T Consensus       372 -----~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          372 -----TEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             -----SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             -----CceEEEEECCCCCHHHHHHHHHHHHh
Confidence                 12345688889999999999999887

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.70  E-value=1.8e-16  Score=117.85  Aligned_cols=166  Identities=15%  Similarity=0.187  Sum_probs=99.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC   96 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~   96 (228)
                      +..+|+|+|++|+|||||+|+|++...+....  ...|........ ..++..+.++||||..........  +.+. .+
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~--~~~~~~~   80 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEF-EYNGEKFKVVDLPGVYSLTANSID--EIIARDY   80 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEE-EETTEEEEEEECCCCSCCSSSSHH--HHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEE-EeCCcEEEEEECCCcCccccccHH--HHHHHHH
Confidence            45799999999999999999999875432221  122333222222 245678999999998765432111  1111 12


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      +..  ..++++++++|..+ + .....++..+.   ...  .|+++++||+|....  ..+.        ....++.+..
T Consensus        81 ~~~--~~~~~~i~v~d~~~-~-~~~~~~~~~~~---~~~--~piilv~nK~Dl~~~--~~~~--------~~~~~~~~~~  141 (188)
T 2wjg_A           81 IIN--EKPDLVVNIVDATA-L-ERNLYLTLQLM---EMG--ANLLLALNKMDLAKS--LGIE--------IDVDKLEKIL  141 (188)
T ss_dssp             HHH--HCCSEEEEEEEGGG-H-HHHHHHHHHHH---TTT--CCEEEEEECHHHHHH--TTCC--------CCHHHHHHHH
T ss_pred             Hhc--cCCCEEEEEecchh-H-HHHHHHHHHHH---hcC--CCEEEEEEhhhcccc--ccch--------HHHHHHHHHh
Confidence            211  24689999999872 1 11222333332   222  379999999998643  2221        1133344333


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      ...      .+..|+.++.+++++++.+.+.+.+...
T Consensus       142 ~~~------~~~~Sa~~~~~v~~l~~~i~~~~~~~~~  172 (188)
T 2wjg_A          142 GVK------VVPLSAAKKMGIEELKKAISIAVKDKKT  172 (188)
T ss_dssp             TSC------EEECBGGGTBSHHHHHHHHHHHHTTC--
T ss_pred             CCC------eEEEEecCCCCHHHHHHHHHHHHHhccC
Confidence            322      2345777889999999999999887654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=119.99  Aligned_cols=168  Identities=15%  Similarity=0.115  Sum_probs=98.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|.+|+|||||++.|++.....  ....+.+.+....... .++  ..+.++||||...           +.
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~   92 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE--RQGSTIGVDFTMKTLE-IQGKRVKLQIWDTAGQER-----------FR   92 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEE-ETTEEEEEEEECCTTCGG-----------GH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCC--CCCCCcceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------HH
Confidence            334789999999999999999998776411  1111111222222222 233  4689999999432           11


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .........+|++++|+|+++..+.... .++..+.......  .|+++|+||+|+...  +.+..       ....++.
T Consensus        93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~v~~-------~~~~~~~  161 (201)
T 2hup_A           93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSEL--REVSL-------AEAQSLA  161 (201)
T ss_dssp             HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred             HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccc--cccCH-------HHHHHHH
Confidence            1222334577999999999854444332 4555555443222  389999999998753  22110       0122233


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCC
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ  214 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~  214 (228)
                      +.....     ..+..||.++.+++++++.|.+.+.++...
T Consensus       162 ~~~~~~-----~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  197 (201)
T 2hup_A          162 EHYDIL-----CAIETSAKDSSNVEEAFLRVATELIMRHGG  197 (201)
T ss_dssp             HHTTCS-----EEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCC-----EEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence            332220     113457778899999999998887775443

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.70  E-value=1.8e-16  Score=119.39  Aligned_cols=162  Identities=16%  Similarity=0.129  Sum_probs=95.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ..+|+|+|++|+|||||+|.|++......  .....+.+........ .....+.++||||...           +....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~   74 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTIT   74 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSC--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCccceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchH
Confidence            47999999999999999999998765221  1112222222222221 1234689999999532           12223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|+++++..+.... .++..+.......  .|+++|+||+|+...  +.+..       ....++.+..
T Consensus        75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~~  143 (203)
T 1zbd_A           75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDE--RVVSS-------ERGRQLADHL  143 (203)
T ss_dssp             HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTS--CCSCH-------HHHHHHHHHH
T ss_pred             HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcc--cccCH-------HHHHHHHHHC
Confidence            3445678999999999854444333 3444444432222  389999999998654  22210       0122233333


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .-.+      +..||.++.+++++++.|.+.+.+
T Consensus       144 ~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          144 GFEF------FEASAKDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             TCEE------EECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             CCeE------EEEECCCCCCHHHHHHHHHHHHHH
Confidence            2222      345667778888888887766544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.70  E-value=1.8e-16  Score=117.50  Aligned_cols=169  Identities=15%  Similarity=0.030  Sum_probs=101.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      +..+|+|+|++|+|||||++.+++.....    ....|+...........+  ..+.++||||....           ..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~   68 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR   68 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCS----SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG-----------TT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCC----CcCCcccceeEEEEEECCEEEEEEEEECCCCHhH-----------HH
Confidence            34799999999999999999999765421    112222221111112233  34679999995432           12


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----Cch
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKP  168 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~  168 (228)
                      ........+|++++|++++++.+....  .++..+......   .|+++++||+|+...  ......+....     ...
T Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  143 (186)
T 1mh1_A           69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ  143 (186)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---SCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCC---CCEEEEeEccccccc--chhhhhhcccccccCCHHH
Confidence            222345688999999999855555444  355555554332   389999999998754  33333222111     112


Q ss_pred             HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ..++.+.....     ..+..||.++.+++++++.+.+.+.+.
T Consensus       144 ~~~~~~~~~~~-----~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          144 GLAMAKEIGAV-----KYLECSALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             HHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             HHHHHHhcCCc-----EEEEecCCCccCHHHHHHHHHHHHhcc
Confidence            23333333220     123457778899999999998887653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.70  E-value=5.9e-17  Score=118.20  Aligned_cols=161  Identities=17%  Similarity=0.134  Sum_probs=93.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ..+|+|+|++|+|||||+|.|++.....  ......+.......... .....+.++||||....           ....
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~   72 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHE--FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSLA   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh-----------hhhh
Confidence            4789999999999999999999765421  11122222222222211 12346899999994321           1111


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|++++++.+.... .++..+.......  .|+++++||+|+...  +.+..       ....++....
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~--~~~~~-------~~~~~~~~~~  141 (170)
T 1r2q_A           73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANK--RAVDF-------QEAQSYADDN  141 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHHHHT
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccc--cccCH-------HHHHHHHHHc
Confidence            2233567999999999855444333 3444444433223  378889999998643  22110       0122222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ...+      +..||.++.+++++++.|.+.+.
T Consensus       142 ~~~~------~~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          142 SLLF------METSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TCEE------EECCTTTCTTHHHHHHHHHHTSC
T ss_pred             CCeE------EEEeCCCCCCHHHHHHHHHHHHh
Confidence            2111      23577788999999999877654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.70  E-value=2.7e-16  Score=117.27  Aligned_cols=164  Identities=13%  Similarity=0.103  Sum_probs=97.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE-eEeeeeeC-----------CcEEEEEeCCCCCCCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKD-----------GQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~~~iDtpG~~~~~~   84 (228)
                      ....+|+|+|++|+|||||+|.|++......  ...+...+.. ..... ..           ...+.++||||...   
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~---   82 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSK--FITTVGIDFREKRVVY-RANGPDGAVGRGQRIHLQLWDTAGLER---   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-CTTSCCCSSCCCEEEEEEEEEECCSGG---
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcC--cccccceeeeeEEEEE-ecCCcccccccCcEEEEEEEeCCCcHH---
Confidence            3457999999999999999999998654211  1112222221 11111 22           24689999999532   


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~  163 (228)
                              +..........+|++++|+|++...+... ..++..+...... ...|+++++||+|+...  +.+..    
T Consensus        83 --------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~----  147 (195)
T 3bc1_A           83 --------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQ--RAVKE----  147 (195)
T ss_dssp             --------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGG--CCSCH----
T ss_pred             --------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCH----
Confidence                    12223344567899999999985544443 3455555444321 12389999999998653  22110    


Q ss_pred             cCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                         ....++.+...-      ..+..|+.++.+++++++.|.+.+.+
T Consensus       148 ---~~~~~~~~~~~~------~~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          148 ---EEARELAEKYGI------PYFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             ---HHHHHHHHHHTC------CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHcCC------CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence               012223222221      12345677789999999988877665

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.70  E-value=1.1e-17  Score=127.58  Aligned_cols=169  Identities=17%  Similarity=0.153  Sum_probs=100.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|.+|+|||||+|.|++.......  .................+  ..+.++||||.........       
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------   79 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNY--NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD-------   79 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEE--ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCH-------
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHH-------
Confidence            34579999999999999999999977642111  111222222221111122  4689999999544322111       


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                          .....+|++++|++++++.+.... .++..+.......  .|+++|+||+|+...  ..+..          .+..
T Consensus        80 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~----------~~~~  141 (218)
T 4djt_A           80 ----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR--QKISK----------KLVM  141 (218)
T ss_dssp             ----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC------CCH----------HHHH
T ss_pred             ----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCH----------HHHH
Confidence                123467999999999865554443 4556666555443  389999999998754  22211          1111


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCC
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP  215 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~  215 (228)
                      ..+....+   ..+..||.++.+++++++.|.+.+.+.....
T Consensus       142 ~~~~~~~~---~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          142 EVLKGKNY---EYFEISAKTAHNFGLPFLHLARIFTGRPDLI  180 (218)
T ss_dssp             HHTTTCCC---EEEEEBTTTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHcCC---cEEEEecCCCCCHHHHHHHHHHHHhcccccc
Confidence            22221111   1234577788999999999999988765443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.70  E-value=4.7e-16  Score=113.10  Aligned_cols=161  Identities=19%  Similarity=0.146  Sum_probs=94.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+++|++|+|||||+|.|++....    .....|............+  ..+.++||||....       ......+
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~   72 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNY   72 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C-------HHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccC----CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh-------HHHHHHH
Confidence            479999999999999999999987642    1122222222222112333  35889999994432       1112222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                          ...+|++++++++++..+... ..++..+...... ...|+++++||+|+...  +++..       ....+..+.
T Consensus        73 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~  138 (168)
T 1u8z_A           73 ----FRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK--RQVSV-------EEAKNRADQ  138 (168)
T ss_dssp             ----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred             ----hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECcccccc--CccCH-------HHHHHHHHH
Confidence                235699999999985444333 3345555554431 12389999999998654  22110       012222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ....      .+..|+.++.+++++++.+.+.+.+
T Consensus       139 ~~~~------~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          139 WNVN------YVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HTCE------EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCe------EEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            2212      2345677789999999999887654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.70  E-value=3e-16  Score=113.96  Aligned_cols=160  Identities=12%  Similarity=0.030  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|++|+|||||+|.+++......     ..|......... .....+.++||||...           +.......
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~-----------~~~~~~~~   64 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRHY   64 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEE-CSSCEEEEEECCCCGG-----------GHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEE-ECCEEEEEEEcCCChh-----------hHHHHHHH
Confidence            799999999999999999987654211     123222222222 4567899999999532           11222334


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ...+|++++|+|++++-+..... ++..+..... ....|+++++||+|+...  .......+...       ...+...
T Consensus        65 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~~~-------~~~~~~~  134 (164)
T 1r8s_A           65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDKLG-------LHSLRHR  134 (164)
T ss_dssp             TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------GGGCSSC
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCcCC--CCHHHHHHHhC-------cccccCc
Confidence            56789999999998654544332 3333322111 112389999999998754  33332222100       0111111


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+   ..+..||.++.+++++++.|.+.+.+
T Consensus       135 ~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          135 NW---YIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             CE---EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             cE---EEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            11   12345778889999999998877654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.70  E-value=8.3e-17  Score=117.50  Aligned_cols=161  Identities=18%  Similarity=0.124  Sum_probs=95.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ..+|+|+|++|+|||||+|.|++......  ................ .....+.++||||.....           ...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~   72 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN--INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-----------ALA   72 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGT
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-----------ccc
Confidence            47999999999999999999998764211  1112222221111111 122468999999963211           111


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|+++++..+.... .++..+.......  .|+++++||+|+...  +++..       .....+.+..
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~--~~v~~-------~~~~~~~~~~  141 (170)
T 1z0j_A           73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDV--REVME-------RDAKDYADSI  141 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGG--CCSCH-------HHHHHHHHHT
T ss_pred             HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccc--cccCH-------HHHHHHHHHc
Confidence            1223567999999999855554443 4555555442222  378899999998754  32211       0122233332


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ...+      +..|+.++.+++++++.|.+.+.
T Consensus       142 ~~~~------~~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          142 HAIF------VETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             TCEE------EECBTTTTBSHHHHHHHHHHHCC
T ss_pred             CCEE------EEEeCCCCcCHHHHHHHHHHHHh
Confidence            2222      23567778999999998877653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=1.8e-16  Score=119.61  Aligned_cols=161  Identities=15%  Similarity=0.122  Sum_probs=98.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|++|+|||||+|.|++.....  ....+.+.+....... .++  ..+.++||||..           .+...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~~~   91 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVE-INGEKVKLQIWDTAGQE-----------RFRSI   91 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG-----------GGHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHH
Confidence            4789999999999999999998776421  1112222232222222 233  358999999932           12233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|+|+++..+... ..++..+.......  .|+++|+||+|+...  +.+...       ...++.+.
T Consensus        92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~v~~~-------~~~~~~~~  160 (201)
T 2ew1_A           92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAER--REVSQQ-------RAEEFSEA  160 (201)
T ss_dssp             HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CSSCHH-------HHHHHHHH
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCHH-------HHHHHHHH
Confidence            4455678899999999985444433 34555555543322  379999999998643  222110       01122222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...      ..+..||.++.+++++++.|.+.+.+
T Consensus       161 ~~~------~~~~~Sa~~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          161 QDM------YYLETSAKESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             HTC------CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCC------EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            221      12345777889999999988777665

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.70  E-value=2.3e-16  Score=117.68  Aligned_cols=167  Identities=14%  Similarity=0.039  Sum_probs=97.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      ....+..+|+|+|.+|+|||||+|.|++...+...   ...|........ ..++..+.++||||.....          
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------   81 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKF-KSSSLSFTVFDMSGQGRYR----------   81 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEE-ECSSCEEEEEEECCSTTTG----------
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEE-EECCEEEEEEECCCCHHHH----------
Confidence            44456689999999999999999999987621121   223333332222 2456789999999954321          


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                       .........+|++++|+|+++..+.... .++..+...... ....|+++|+||+|+...  ....+..+         
T Consensus        82 -~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~---------  149 (190)
T 2h57_A           82 -NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQ---------  149 (190)
T ss_dssp             -GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHH---------
T ss_pred             -HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHH---------
Confidence             1122344677999999999854333332 333333332211 012489999999999754  33322211         


Q ss_pred             HHH--hcC-CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          172 ILQ--LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       172 ~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...  ... ..+    ..+..||.++.+++++++.|.+.+.+
T Consensus       150 ~~~~~~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          150 LLCLENIKDKPW----HICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             HHTGGGCCSSCE----EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             HhChhhccCCce----EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            111  111 111    12345778889999999999877654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.70  E-value=1.2e-16  Score=124.97  Aligned_cols=163  Identities=19%  Similarity=0.183  Sum_probs=99.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+|+|.+|||||||+|+|+|.... .+.. .+.|........ ...+..+.++||||..........  +.+...+-
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~-pg~tv~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~--e~v~~~~~   79 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANW-PGVTVEKKEGVF-TYKGYTINLIDLPGTYSLGYSSID--EKIARDYL   79 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEE-EEEC-TTSCCEEEEEEE-EETTEEEEEEECCCCSSCCSSSHH--HHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCC-CCceEEEEEEEE-EECCeEEEEEECCCcCccCCCCHH--HHHHHHHH
Confidence            468999999999999999999997753 2211 133433332222 245678999999998876543211  12222111


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                       ....+|++++|+|+++ +.. .   +.+...+....  .|+++++||+|....  ..+.        .....+.+..+-
T Consensus        80 -~~~~~d~ii~V~D~t~-~~~-~---~~~~~~l~~~~--~pvilv~NK~Dl~~~--~~i~--------~~~~~l~~~lg~  141 (258)
T 3a1s_A           80 -LKGDADLVILVADSVN-PEQ-S---LYLLLEILEME--KKVILAMTAIDEAKK--TGMK--------IDRYELQKHLGI  141 (258)
T ss_dssp             -HHSCCSEEEEEEETTS-CHH-H---HHHHHHHHTTT--CCEEEEEECHHHHHH--TTCC--------BCHHHHHHHHCS
T ss_pred             -hhcCCCEEEEEeCCCc-hhh-H---HHHHHHHHhcC--CCEEEEEECcCCCCc--cchH--------HHHHHHHHHcCC
Confidence             1147899999999983 322 1   22222322222  389999999998643  2221        113333333332


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                            ..+..||.++.++++|++.+.+.+..
T Consensus       142 ------~vi~~SA~~g~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          142 ------PVVFTSSVTGEGLEELKEKIVEYAQK  167 (258)
T ss_dssp             ------CEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             ------CEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence                  23456777889999999999888764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=7.8e-17  Score=120.37  Aligned_cols=165  Identities=16%  Similarity=0.112  Sum_probs=98.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ....+|+|+|+.|+|||||+|.|++........  ...+.+....... ......+.++||||.           ..+..
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~   87 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV--STVGIDFKVKTVYRHEKRVKLQIWDTAGQ-----------ERYRT   87 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE--EEETTTEEEEEEEETTTTEEEEEECHHHH-----------HHCHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC--CCeeeEEEEEEEEECCEEEEEEEEeCCCh-----------HHHHH
Confidence            345799999999999999999999865411111  1111111111111 123456999999991           22233


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........+|++++|+++++.-+... ..++..+.......  .|+++|+||+|+...  +.+...       ....+.+
T Consensus        88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~  156 (191)
T 3dz8_A           88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEE--RVVPTE-------KGQLLAE  156 (191)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCHH-------HHHHHHH
T ss_pred             HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCHH-------HHHHHHH
Confidence            33344567899999999985444433 33555555543223  389999999998643  221110       1122223


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .....      .+..|+.++.+++++++.|.+.+.+.
T Consensus       157 ~~~~~------~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          157 QLGFD------FFEASAKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             HHTCE------EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HcCCe------EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            22222      23457778899999999998877664

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.70  E-value=1.4e-16  Score=118.69  Aligned_cols=166  Identities=13%  Similarity=0.089  Sum_probs=93.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      +.....+|+|+|.+|+|||||+|.|++......  .....+.+....... .++  ..+.++||||..           +
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~-----------~   81 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--TEATIGVDFRERAVD-IDGERIKIQLWDTAGQE-----------R   81 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--CCCCCSCCEEEEEEE-ETTEEEEEEEEECCCSH-----------H
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCcceEEEEEEEE-ECCEEEEEEEEECCCch-----------h
Confidence            344557999999999999999999997764221  112222222222222 233  468999999932           1


Q ss_pred             HH-HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           93 IV-KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        93 ~~-~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +. .........+|++++|+|+++..+... ..++..+....... ..|+++|+||+|+...  +++..       ....
T Consensus        82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~--~~v~~-------~~~~  151 (189)
T 1z06_A           82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN-DIPRILVGNKCDLRSA--IQVPT-------DLAQ  151 (189)
T ss_dssp             HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS-CCCEEEEEECTTCGGG--CCSCH-------HHHH
T ss_pred             hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccccc--ceeCH-------HHHH
Confidence            21 222233457899999999985444433 34555555543211 2389999999998654  32211       0122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccch---HHHHHHHHHHHHHHHh
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~i~~~~~~  210 (228)
                      ++.......      .+..|+.++   .++.++++.|.+.+.+
T Consensus       152 ~~~~~~~~~------~~~~Sa~~~~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          152 KFADTHSMP------LFETSAKNPNDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHTTCC------EEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred             HHHHHcCCE------EEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence            233322222      223466667   8899999988766543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=4.7e-16  Score=116.28  Aligned_cols=168  Identities=16%  Similarity=0.041  Sum_probs=101.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      +...+|+|+|+.|+|||||++.|++....    .....|+..........++  ..+.++||||......          
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------   81 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFP----EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----------   81 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCC----CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH----------
Confidence            34579999999999999999999987542    1122222222111111233  4688999999654321          


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----Cc
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PK  167 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~  167 (228)
                       ........+|++++|+|++++-+....  .++..+......   .|+++|+||+|+...  ......+....     ..
T Consensus        82 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~  155 (194)
T 2atx_A           82 -LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN---VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVE  155 (194)
T ss_dssp             -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHH
T ss_pred             -HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccc--ccchhhcccccCcccCHH
Confidence             122345678999999999855444443  355666554332   389999999999765  43333322211     11


Q ss_pred             hHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ...++.+....     ...+..||.++.+++++++.|.+.+.
T Consensus       156 ~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          156 QGQKLAKEIGA-----CCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHHHHHHHTC-----SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-----cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            12223222221     01234577788999999998877654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.69  E-value=8.6e-16  Score=113.68  Aligned_cols=167  Identities=22%  Similarity=0.179  Sum_probs=97.8

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHH
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      +.+..+..+|+|+|++|+|||||+|.|++....    .....|+...........+.  .+.++||||.......     
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----   82 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFV----DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM-----   82 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS-----
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH-----
Confidence            344556789999999999999999999976542    12223333222222223443  3667999995432211     


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchH
Q 027090           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL  169 (228)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~  169 (228)
                        ...++    ..+|++++|++++++-+... ..++..+....... ..|+++|+||+|+...  +.+..       ...
T Consensus        83 --~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~--~~v~~-------~~~  146 (183)
T 3kkq_A           83 --REQYM----RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMHL--RKVTR-------DQG  146 (183)
T ss_dssp             --HHHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCCEEEEEECTTCSTT--CCSCH-------HHH
T ss_pred             --HHHHH----hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEECCCchhc--cCcCH-------HHH
Confidence              11222    24599999999985444433 33445554433222 2389999999998653  22211       012


Q ss_pred             HHHHHhcCCeEEEeeCCCccccc-chHHHHHHHHHHHHHHHh
Q 027090          170 KEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~~  210 (228)
                      .++.+.....      .+..|+. ++.+++++++.|.+.+.+
T Consensus       147 ~~~~~~~~~~------~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          147 KEMATKYNIP------YIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHTCC------EEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCe------EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            2233333322      2334666 678999999999887765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.69  E-value=1.8e-16  Score=119.72  Aligned_cols=163  Identities=17%  Similarity=0.127  Sum_probs=99.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ...+|+|+|++|+|||||+|.|++.....  ......+.+....... ..+  ..+.++||||.......          
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~----------   73 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN--DYISTIGVDFKIKTVE-LDGKTVKLQIWDTAGQERFRTI----------   73 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCT--TCCCSSCCCEEEEEEE-ETTEEEEEEEECCTTTTTTTCC----------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEE-ECCEEEEEEEEeCCChHHHHHH----------
Confidence            34799999999999999999999876521  1112222222222222 233  36899999995543221          


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                       .......+|++++|++++...+.... .++..+.......  .|+++|+||+|+...  +.+..       ....++..
T Consensus        74 -~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~  141 (206)
T 2bcg_Y           74 -TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDK--RVVEY-------DVAKEFAD  141 (206)
T ss_dssp             -CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT--CCSCH-------HHHHHHHH
T ss_pred             -HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCH-------HHHHHHHH
Confidence             22344678999999999855444443 3455554443222  389999999998754  22210       01222322


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .....      .+..||.++.+++++++.|.+.+.+.
T Consensus       142 ~~~~~------~~~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          142 ANKMP------FLETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             HTTCC------EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HcCCe------EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            22211      23456778899999999998877654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.69  E-value=7.1e-16  Score=112.16  Aligned_cols=160  Identities=18%  Similarity=0.153  Sum_probs=94.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+++|++|+|||||+|+|++....    .....|............  ...+.++||||......       ....+
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~   71 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFV----EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLY   71 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCC----CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCC----CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHH
Confidence            368999999999999999999986541    112223322222111122  34588999999654321       11222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      +    ...|++++++++++..+... ..++..+...... ...|+++++||+|+...  +.+..       ....++.+.
T Consensus        72 ~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~  137 (167)
T 1c1y_A           72 M----KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE--RVVGK-------EQGQNLARQ  137 (167)
T ss_dssp             H----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG--CCSCH-------HHHHHHHHH
T ss_pred             h----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc--ccCCH-------HHHHHHHHH
Confidence            2    24599999999985444333 2345555444322 12489999999998654  32210       012222322


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ....     ..+..||.++.+++++++.|.+.+
T Consensus       138 ~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          138 WCNC-----AFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTSC-----EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccCC-----cEEEecCCCCCCHHHHHHHHHHHH
Confidence            2111     123457778899999999887765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.69  E-value=2.6e-15  Score=113.07  Aligned_cols=165  Identities=19%  Similarity=0.157  Sum_probs=96.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      +..+..+|+|+|++|+|||||+|.|++....    .....|+...........+  ..+.++||||.....       ..
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~   78 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AI   78 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCC----TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HH
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HH
Confidence            3445689999999999999999999987641    1222232222222222333  368899999965421       11


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ...++    ..+|++++++++++.-+.... .++..+...... ...|+++|+||+|+...  ..+..       ....+
T Consensus        79 ~~~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~-------~~~~~  144 (206)
T 2bov_A           79 RDNYF----RSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK--RQVSV-------EEAKN  144 (206)
T ss_dssp             HHHHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGG--CCSCH-------HHHHH
T ss_pred             HHHHH----hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCcccc--ccccH-------HHHHH
Confidence            22222    345999999999854444333 345555544321 12389999999998754  22110       01222


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.+.....+      +..|+.++.+++++++.|.+.+.+
T Consensus       145 ~~~~~~~~~------~~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          145 RAEQWNVNY------VETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             HHHHHTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            222222222      334666778999999988777654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=1.1e-16  Score=120.02  Aligned_cols=164  Identities=19%  Similarity=0.137  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|++|+|||||+|+|++......    ...|............  ...+.++||||.....       ....
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~   74 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT----YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQR   74 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCT----TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCc----ccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHH
Confidence            3458999999999999999999998654211    1122222111111122  2358999999954321       1122


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .++    ..+|+++++++++...+.... .++..+..........|+++|+||+|+...  ......        ...+.
T Consensus        75 ~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~  140 (199)
T 2gf0_A           75 LSI----SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDTRE--------AQAVA  140 (199)
T ss_dssp             HHH----HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCHHH--------HHHHH
T ss_pred             Hhh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCHHH--------HHHHH
Confidence            222    345999999999854343332 344445444332222489999999998753  211111        11222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ......      .+..||.++.+++++++.|.+.+.++
T Consensus       141 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          141 QEWKCA------FMETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             HHHTCE------EEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             HHhCCe------EEEEecCCCCCHHHHHHHHHHHHhhh
Confidence            222211      23357778899999999998877654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=4.9e-16  Score=113.51  Aligned_cols=162  Identities=17%  Similarity=0.165  Sum_probs=94.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|++|+|||||+|.|++.......    ..|............  ...+.++||||.....       .....+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~   71 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY----IPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLS   71 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSC----CCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHh
Confidence            479999999999999999999987642111    112211111111122  2358999999965431       122222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      +    ..+|+++++++++++.+... ..++..+..........|+++++||+|+...  +.+...       ....+...
T Consensus        72 ~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~~  138 (172)
T 2erx_A           72 I----SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALART  138 (172)
T ss_dssp             H----HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred             c----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHHH
Confidence            2    24599999999985444333 2344445444322122489999999998654  332110       01122222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ....      .+..|+.++.+++++++.|.+.+..
T Consensus       139 ~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          139 WKCA------FMETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             HTCE------EEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             hCCe------EEEecCCCCcCHHHHHHHHHHHHhh
Confidence            2211      2345777889999999998876654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.69  E-value=9.9e-17  Score=121.09  Aligned_cols=167  Identities=14%  Similarity=0.043  Sum_probs=97.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-CCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      .....+|+|+|++|+|||||+|.|++....  .......+.+......... ....+.++||||.....           
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------   71 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ-----------   71 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCC--SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS-----------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-----------
Confidence            345579999999999999999999987642  1112222233222222211 12468999999943221           


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      .........+|++++|+|++.+.+.... .++..+......  ....|+++|+||+|+...  ......        ...
T Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~  141 (207)
T 1vg8_A           72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQA  141 (207)
T ss_dssp             CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHH
T ss_pred             HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHH
Confidence            1122344678999999999854444333 344444444321  112389999999998743  221111        112


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.......     ..+..||.++.+++++++.|.+.+.+
T Consensus       142 ~~~~~~~~-----~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          142 WCYSKNNI-----PYFETSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             HHHHTTSC-----CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHhcCCc-----eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            22211111     12345777889999999988777665

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.69  E-value=1.6e-16  Score=116.03  Aligned_cols=159  Identities=16%  Similarity=0.207  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH-HHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-CLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~-~~~   98 (228)
                      .+|+|+|++|+|||||+|+|++....... . .+.|.+..... ...++..+.++||||..........  +.+.. ++.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~-~-~~~t~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~~~~~--~~~~~~~~~   78 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGN-W-PGVTVEKKEGE-FEYNGEKFKVVDLPGVYSLTANSID--EIIARDYII   78 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEE-EEETTEEEEEEECCCCSCSSSSSHH--HHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccC-C-CCcceeeeEEE-EEECCcEEEEEECCCcccCCCcchh--HHHHHHHHh
Confidence            68999999999999999999987542211 1 11222222222 2235677999999998765322111  12211 211


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      .  ..++++++++|+.. . .....++..+..   ..  .|+++|+||+|+...  ..+..        ...++.+....
T Consensus        79 ~--~~~~~~i~v~D~~~-~-~~~~~~~~~~~~---~~--~p~ilv~nK~Dl~~~--~~~~~--------~~~~~~~~~~~  139 (165)
T 2wji_A           79 N--EKPDLVVNIVDATA-L-ERNLYLTLQLME---MG--ANLLLALNKMDLAKS--LGIEI--------DVDKLEKILGV  139 (165)
T ss_dssp             H--HCCSEEEEEEETTC-H-HHHHHHHHHHHH---TT--CCEEEEEECHHHHHH--TTCCC--------CHHHHHHHHTS
T ss_pred             c--CCCCEEEEEecCCc-h-hHhHHHHHHHHh---cC--CCEEEEEEchHhccc--cChhh--------HHHHHHHHhCC
Confidence            1  25799999999873 1 112223333322   12  389999999997543  22110        12233333221


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                            ..+..||.++.+++++++.+.+.+
T Consensus       140 ------~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          140 ------KVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             ------CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             ------CEEEEEcCCCCCHHHHHHHHHHHh
Confidence                  223468888999999999887765

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.69  E-value=4.1e-16  Score=116.52  Aligned_cols=164  Identities=17%  Similarity=0.119  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ....+|+|+|++|+|||||+|.|++......  ................ .....+.++||||.......       ...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~   93 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD--SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI-------TSA   93 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS--CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-------HHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-------hHH
Confidence            3347899999999999999999998765211  1122222222111111 12346899999997653211       111


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                          ....+|++++|++++...+... ..++..+.......  .|+++++||+|+...  +.+..       .....+..
T Consensus        94 ----~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~  158 (193)
T 2oil_A           94 ----YYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT--IVVMLVGNKSDLSQA--REVPT-------EEARMFAE  158 (193)
T ss_dssp             ----HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHHH
T ss_pred             ----HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECCCcccc--cccCH-------HHHHHHHH
Confidence                2346799999999985444333 23444444432222  389999999998753  22110       01222333


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .....+      +..||.++.+++++++.|.+.+.+
T Consensus       159 ~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          159 NNGLLF------LETSALDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             HTTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HcCCEE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            222222      234667789999999988777655

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.68  E-value=9.3e-16  Score=114.21  Aligned_cols=165  Identities=12%  Similarity=0.041  Sum_probs=101.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ++..+|+|+|++|+|||||+|.+++.......     .|........ ..+...+.++||||.......           
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~-----------   82 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-----PTVGVNLETL-QYKNISFEVWDLGGQTGVRPY-----------   82 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-----SSTTCCEEEE-EETTEEEEEEEECCSSSSCCC-----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcC-----CCCceEEEEE-EECCEEEEEEECCCCHhHHHH-----------
Confidence            45689999999999999999999876643221     1222222222 245678999999996543221           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|+|+++.-+..... ++..+..... ....|+++|+||+|+...  .......+...       ...
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~~~-------~~~  152 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPDA--ASEAEIAEQLG-------VSS  152 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------GGG
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcCC--CCHHHHHHHhC-------hhh
Confidence            123446789999999998665555433 3333322111 112489999999998764  33332222100       011


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +...-+   ..+..||.++.+++++++.|.+.+.++
T Consensus       153 ~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          153 IMNRTW---TIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CCSSCE---EEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             ccCCce---EEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            111111   123457788899999999999888764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=2e-16  Score=119.77  Aligned_cols=168  Identities=17%  Similarity=0.107  Sum_probs=100.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ...+|+|+|.+|+|||||+|.|++.....    ....|+..........++  ..+.++||||.....           .
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~   88 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE----VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-----------R   88 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTCT-----------T
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCC----cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH-----------H
Confidence            34799999999999999999999876521    112222222111112233  358899999965432           1


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCC-----ch
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KP  168 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~-----~~  168 (228)
                      ........+|++++|+++++.-+....  .++..+......   .|+++|+||+|+...  ......+.....     ..
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  163 (207)
T 2fv8_A           89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN---VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD  163 (207)
T ss_dssp             TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence            122345678999999999854444333  455555554322   389999999999765  444433332211     11


Q ss_pred             HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...+.......     ..+..||.++.+++++++.|.+.+..
T Consensus       164 ~~~~~~~~~~~-----~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          164 GRAMAVRIQAY-----DYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             HHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCC-----EEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            22222222211     11345777889999999999887765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.68  E-value=1.2e-16  Score=116.36  Aligned_cols=160  Identities=18%  Similarity=0.109  Sum_probs=94.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ...+|+|+|++|+|||||+|.|++......  ...+.+.+....... ..  ...+.++||||.......          
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~----------   70 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--YKKTIGVDFLERQIQ-VNDEDVRLMLWDTAGQEEFDAI----------   70 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--SSCCCSSSEEEEEEE-ETTEEEEEEEECCTTGGGTTCC----------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceEEEEEEEEEE-ECCEEEEEEEEcCCCcHhHHHH----------
Confidence            347999999999999999999998754211  111222222222222 22  236899999994432211          


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL  173 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~  173 (228)
                       .......+|++++++++++..+... ..++..+......   .|+++|+||+|+...  +.+ ...        ..++.
T Consensus        71 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~--~~~~~~~--------~~~~~  136 (168)
T 1z2a_A           71 -TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDD--SCIKNEE--------AEGLA  136 (168)
T ss_dssp             -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGG--CSSCHHH--------HHHHH
T ss_pred             -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccCcc--cccCHHH--------HHHHH
Confidence             1122346799999999985443333 2345555444322   389999999998753  221 111        22233


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.....+      +..|+.++.+++++++.|.+.+.+
T Consensus       137 ~~~~~~~------~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          137 KRLKLRF------YRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHTCEE------EECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             HHcCCeE------EEEecCCCCCHHHHHHHHHHHHhh
Confidence            3222222      345677788999999998876643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.68  E-value=3.8e-16  Score=117.44  Aligned_cols=170  Identities=16%  Similarity=0.096  Sum_probs=92.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .....+|+|+|++|+|||||+|.|++.......  ......+....... .++  ..+.++||||....       ....
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-------~~~~   94 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENI--SATLGVDFQMKTLI-VDGERTVLQLWDTAGQERF-------RSIA   94 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEE-ETTEEEEEEEEECTTCTTC-------HHHH
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccC--CCCccceeEEEEEE-ECCEEEEEEEEECCCCcch-------hhhH
Confidence            344589999999999999999999987642111  11111111111111 222  45899999995432       1122


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ..++    ..+|++++|+++++..+.... .++..+.......  .|+++|+||+|+...  ..... .+.........+
T Consensus        95 ~~~~----~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~  165 (199)
T 2p5s_A           95 KSYF----RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKL  165 (199)
T ss_dssp             HHHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHH
T ss_pred             HHHH----hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--ccccc-ccccCHHHHHHH
Confidence            2222    345999999999855444433 3555555443222  389999999998632  11100 000001112223


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .......+      +..||.++.+++++++.|.+.+.+
T Consensus       166 ~~~~~~~~------~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          166 AMTYGALF------CETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHTCEE------EECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             HHHcCCeE------EEeeCCCCCCHHHHHHHHHHHHHh
Confidence            33222221      235777889999999998877654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.68  E-value=3.5e-16  Score=116.13  Aligned_cols=169  Identities=15%  Similarity=0.085  Sum_probs=98.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|++|+|||||++.|++....    .....|............  ...+.++||||....           .
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~   69 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------D   69 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------T
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceeEEEEEEECCEEEEEEEEECCCChhh-----------h
Confidence            44579999999999999999999987542    111222222211111122  345899999994322           1


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc-C---Cch
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-C---PKP  168 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~-~---~~~  168 (228)
                      .........+|++++|+|++++.+....  .++..+......   .|+++++||+|+.... ..+.++.... +   ...
T Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~  145 (184)
T 1m7b_A           70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ  145 (184)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred             hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHH
Confidence            1223345688999999999865555543  355555554322   3899999999987531 1122211110 0   112


Q ss_pred             HHHHHHhcCCeEEEeeCCCccccc-chHHHHHHHHHHHHHHH
Q 027090          169 LKEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~  209 (228)
                      ..++.+.....     ..+..||. ++.+++++++.+.+.+-
T Consensus       146 ~~~~~~~~~~~-----~~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          146 GANMAKQIGAA-----TYIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             HHHHHHHHTCS-----EEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCc-----EEEEeeecCCCcCHHHHHHHHHHHHh
Confidence            23333332211     12345776 57899999998877654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.68  E-value=2.9e-15  Score=112.36  Aligned_cols=181  Identities=11%  Similarity=0.026  Sum_probs=93.6

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .+.+..+..+|+|+|.+|||||||++.+++........ ....+...............+.++||||........-.   
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---   88 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD---   88 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC---
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh---
Confidence            34556667899999999999999999999864322111 01111111111111123457999999996553221100   


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                       ...+    ...+|++++|+|+++++......+..++..........|+++|.||+|+...  .......+........+
T Consensus        89 -~~~~----~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~~~~~  161 (196)
T 3llu_A           89 -YEMI----FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQRANDD  161 (196)
T ss_dssp             -HHHH----HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHHHHHH
T ss_pred             -cccc----cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHHHHHH
Confidence             0112    2356999999999865223333444444443111122389999999998764  22211111100111222


Q ss_pred             HHHhcC-CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      +.+... ...+   ..+..||.+ .+++++++.+.+.
T Consensus       162 ~~~~~~~~~~~---~~~e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          162 LADAGLEKLHL---SFYLTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             HHHTTCTTSCE---EEEEECTTS-THHHHHHHHHHHH
T ss_pred             HHHhhhhcCCc---ceEEEEech-hhHHHHHHHHHHH
Confidence            332110 1111   123457788 9999999887654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.68  E-value=1.2e-15  Score=115.78  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=69.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|++|+|||||++.|++......    ...+. ..........  ...+.++||||...           +.
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~   68 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDT----QTSIT-DSSAIYKVNNNRGNSLTLIDLPGHES-----------LR   68 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCB----CCCCS-CEEEEEECSSTTCCEEEEEECCCCHH-----------HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccc----cCCcc-eeeEEEEecCCCccEEEEEECCCChh-----------HH
Confidence            3457999999999999999999998764221    12111 1222222111  46799999999431           12


Q ss_pred             H-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh----CccccccEEEEEeCCCCCcc
Q 027090           95 K-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        95 ~-~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~----~~~~~~~~llv~~~~D~~~~  152 (228)
                      . ........+|++++|+|+++ +........+.+...+    ......|+++|+||+|+...
T Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            2 22333567899999999973 2221222222222221    11112389999999998765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.68  E-value=7.2e-16  Score=114.58  Aligned_cols=164  Identities=17%  Similarity=0.126  Sum_probs=97.8

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .+..+..+|+|+|++|||||||++.+++.....    ....|.. ........++  ..+.++||||....        +
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----~~~~t~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~   81 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ----EESPEGG-RFKKEIVVDGQSYLLLIRDEGGPPEL--------Q   81 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC----CCCTTCE-EEEEEEEETTEEEEEEEEECSSSCCH--------H
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC----CcCCCcc-eEEEEEEECCEEEEEEEEECCCChhh--------h
Confidence            445566899999999999999999998776421    1122222 1112222344  34778999995431        1


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                          ++.    ..|++++|+|+++.-|... ..++..+..... ....|++++.||+|+.......+.       .....
T Consensus        82 ----~~~----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~  145 (184)
T 3ihw_A           82 ----FAA----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVID-------DSRAR  145 (184)
T ss_dssp             ----HHH----HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSC-------HHHHH
T ss_pred             ----eec----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccC-------HHHHH
Confidence                222    3599999999986655555 345555554321 122489999999998422001111       01122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ++.+......     .+..||.++.+++++++.+.+.+.+.
T Consensus       146 ~~~~~~~~~~-----~~e~Sa~~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          146 KLSTDLKRCT-----YYETCATYGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHTTTCE-----EEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCe-----EEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            3333332111     13357778899999999988876653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.68  E-value=6.4e-17  Score=118.04  Aligned_cols=161  Identities=17%  Similarity=0.096  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|++|+|||||+|+|++......  .....+.+....... ..  ...+.++||||.....       ..    .
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~-------~~----~   69 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN--KEPTIGAAFLTQRVT-INEHTVKFEIWDTAGQERFA-------SL----A   69 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGG-------GG----H
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEECCCChhhh-------hh----h
Confidence            6899999999999999999998764211  111222222222212 22  2368999999943211       11    1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|+++++..+.... .++..+.......  .|+++++||+|+...  .......    .....++.+..
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~v~----~~~~~~~~~~~  141 (170)
T 1ek0_A           70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE--GGERKVA----REEGEKLAEEK  141 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS--SCCCCSC----HHHHHHHHHHH
T ss_pred             hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc--ccccCCC----HHHHHHHHHHc
Confidence            2233567999999999855444443 3454554443223  379999999998643  1100000    01122222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ...      .+..||.++.+++++++.|.+.+
T Consensus       142 ~~~------~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          142 GLL------FFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             TCE------EEECCTTTCTTHHHHHHHHHTTS
T ss_pred             CCE------EEEEeCCCCCCHHHHHHHHHHHH
Confidence            222      23456777899999999887654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.68  E-value=2.9e-15  Score=110.94  Aligned_cols=163  Identities=18%  Similarity=0.162  Sum_probs=97.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      .+..+|+|+|++|+|||||+|.|++....    .....|+...........+  ..+.++||||.....       ....
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~   84 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFV----EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRD   84 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCC----CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCC----CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHH
Confidence            34589999999999999999999987642    1222232222222122333  368899999955421       1222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .++    ...|++++|+++++..+... ..++..+....... ..|+++|+||+|+...  +.+..       ....++.
T Consensus        85 ~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~  150 (187)
T 2a9k_A           85 NYF----RSGEGFLCVFSITEMESFAATADFREQILRVKEDE-NVPFLLVGNKSDLEDK--RQVSV-------EEAKNRA  150 (187)
T ss_dssp             HHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCT-TCCEEEEEECGGGGGG--CCSCH-------HHHHHHH
T ss_pred             HHh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEECcccccc--CccCH-------HHHHHHH
Confidence            222    34599999999985444333 33555555544311 2389999999998653  22110       0122233


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.....+      +..++.++.+++++++.|.+.+.+
T Consensus       151 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          151 EQWNVNY------VETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             HHTTCEE------EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCeE------EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            3322222      235677789999999999887765

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.68  E-value=1.5e-16  Score=121.30  Aligned_cols=161  Identities=18%  Similarity=0.146  Sum_probs=97.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      +..+|+|+|.+|+|||||++.++.....    .....|....  ...... .....+.++||+|.....           
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~----~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~-----------   76 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFD----NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR-----------   76 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEECSSCEEEEEEECCSCTTTCG-----------
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCC----CCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh-----------
Confidence            4479999999999999999999876541    1222333222  111111 122357899999944321           


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ......++.+++++++++.+++-|.... .|+..+........  |++||.||+|+...  +.+..       ....++.
T Consensus        77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~--r~V~~-------~e~~~~a  145 (216)
T 4dkx_A           77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADK--RQVSI-------EEGERKA  145 (216)
T ss_dssp             GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred             hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhc--CcccH-------HHHhhHH
Confidence            1222344677999999999966666554 46666666554443  89999999998754  33221       0122233


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +..+-.+      +..||.++.+++++++.|.+.+..
T Consensus       146 ~~~~~~~------~e~SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          146 KELNVMF------IETSAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             HHHTCEE------EEEBTTTTBSHHHHHHHHHHHC--
T ss_pred             HHhCCee------EEEeCCCCcCHHHHHHHHHHHHHh
Confidence            3322221      245888899999999988776653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.68  E-value=3.7e-16  Score=116.92  Aligned_cols=165  Identities=11%  Similarity=0.042  Sum_probs=95.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ..+..+|+|+|++|+|||||++.+++......     ..|........ ......+.++||||......       .+..
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-------~~~~   92 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNICFTVWDVGGQDKIRP-------LWRH   92 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEE-EETTEEEEEEECC-----CT-------THHH
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEE-EECCEEEEEEECCCCHhHHH-------HHHH
Confidence            34568999999999999999999987664221     12222222222 24567899999999654321       1111


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                          ....+|++++|+|++++-+.... .++..+..... ....|+++|+||+|+...  .......+...       ..
T Consensus        93 ----~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~~~-------~~  158 (192)
T 2b6h_A           93 ----YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPNA--MPVSELTDKLG-------LQ  158 (192)
T ss_dssp             ----HHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------GG
T ss_pred             ----HhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCCC--CCHHHHHHHhC-------cc
Confidence                22467999999999865554443 23333322111 112489999999998754  33332222100       01


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+....+   ..+..||.++.+++++++.|.+.+.+
T Consensus       159 ~~~~~~~---~~~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          159 HLRSRTW---YVQATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             GCSSCCE---EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             cccCCce---EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence            1111111   12346788889999999998876643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.68  E-value=4e-16  Score=118.00  Aligned_cols=173  Identities=14%  Similarity=0.084  Sum_probs=98.9

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHH
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      ........+|+|+|++|+|||||+|.|++....    .....|...........+  ...+.++||||....        
T Consensus        22 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------   89 (205)
T 1gwn_A           22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY--------   89 (205)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG--------
T ss_pred             CcccceeeEEEEECCCCCCHHHHHHHHhcCCCC----CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh--------
Confidence            334455689999999999999999999987652    111222222221111122  346899999994322        


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc----
Q 027090           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----  164 (228)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~----  164 (228)
                         ..........+|++++|+|+++..+....  .++..+......   .|+++|+||+|+.... ..+.++....    
T Consensus        90 ---~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v  162 (205)
T 1gwn_A           90 ---DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRTDV-STLVELSNHRQTPV  162 (205)
T ss_dssp             ---TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CEEEEEEECGGGGGCH-HHHHHHHTTTCCCC
T ss_pred             ---hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEechhhccch-hhhhhhcccccCCC
Confidence               11223345688999999999865555543  455656554332   3899999999987531 1222211110    


Q ss_pred             CCchHHHHHHhcCCeEEEeeCCCccccc-chHHHHHHHHHHHHHHH
Q 027090          165 CPKPLKEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~  209 (228)
                      ......++.+.....     ..+..||. ++.+++++++.+.+.+-
T Consensus       163 ~~~~~~~~~~~~~~~-----~~~e~SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          163 SYDQGANMAKQIGAA-----TYIECSALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             CHHHHHHHHHHHTCS-----EEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCC-----EEEEeeeccCCcCHHHHHHHHHHHHh
Confidence            011223333332211     11345676 57899999998877654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.68  E-value=3e-16  Score=116.21  Aligned_cols=162  Identities=15%  Similarity=0.063  Sum_probs=94.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .+..+..+|+|+|.+|+|||||+|.|++.......... .    ....... .++..+.++||||.....          
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~-~----~~~~~~~-~~~~~~~i~Dt~G~~~~~----------   79 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI-G----SNVEEIV-INNTRFLMWDIGGQESLR----------   79 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCS-S----SSCEEEE-ETTEEEEEEEESSSGGGT----------
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcC-c----eeeEEEE-ECCEEEEEEECCCCHhHH----------
Confidence            44455689999999999999999999987652111111 1    1111222 356789999999964321          


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                       .........+|++++|+|+++..+..... ++..+..... ....|+++|+||+|+...  .......+...       
T Consensus        80 -~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~~~-------  148 (181)
T 2h17_A           80 -SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQFLK-------  148 (181)
T ss_dssp             -CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------
T ss_pred             -HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHHhC-------
Confidence             12233456789999999998666665443 3333332210 122489999999998754  22222211100       


Q ss_pred             HHhcC-CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       173 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ..... ..+    ..+..||.++.+++++++.|.+
T Consensus       149 ~~~~~~~~~----~~~~~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          149 LTSIKDHQW----HIQACCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             GGGCCSSCE----EEEECBTTTTBTHHHHHHHHHT
T ss_pred             cccccCCce----EEEEccCCCCcCHHHHHHHHHh
Confidence            01111 111    1234577888999999988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.68  E-value=1.6e-15  Score=113.89  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=93.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC----------------------------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------------------   68 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------   68 (228)
                      .+..+|+|+|+.|+|||||+|+|++......  ............... ..+                            
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHEN--TNTTIGASFCTYVVN-LNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSCEEEEEEEE-TTC----------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCC--cCccccceeEEEEEE-ecCcccccccccccccccccccccccccccc
Confidence            3458999999999999999999998764211  111111111111111 111                            


Q ss_pred             -----------cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccc
Q 027090           69 -----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNV  136 (228)
Q Consensus        69 -----------~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~  136 (228)
                                 ..+.++||||......       .    .......+|++++|+|++...+.... .++..+.....   
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~----~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---  147 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYAS-------I----VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---  147 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTT-------T----HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred             ccccccCccceeEEEEEECCCcHHHHH-------H----HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence                       5689999999443221       1    11223467999999999855444443 34444444322   


Q ss_pred             cccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          137 FDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       137 ~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                       .|+++|+||+|..... ....+         ..++.+.....+      +..||.++.+++++++.|.+.+.+
T Consensus       148 -~piilv~NK~D~~~~~-~~~~~---------~~~~~~~~~~~~------~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          148 -YIIILVANKIDKNKFQ-VDILE---------VQKYAQDNNLLF------IQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             -CEEEEEEECTTCC-CC-SCHHH---------HHHHHHHTTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             -CcEEEEEECCCccccc-CCHHH---------HHHHHHHcCCcE------EEEecCCCCCHHHHHHHHHHHHHH
Confidence             3899999999932220 11111         222333322222      345677789999999999887765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.68  E-value=6e-17  Score=119.74  Aligned_cols=169  Identities=17%  Similarity=0.101  Sum_probs=93.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .....+|+|+|++|+|||||++.+++....    .....|+...........  ...+.++||||.....          
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------   70 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFP----TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN----------   70 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTT----------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh----------
Confidence            345589999999999999999999976541    111222221111111112  2346799999954322          


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc---CCch
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---CPKP  168 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~---~~~~  168 (228)
                       .........+|++++|+|+++..+....  .++..+......   .|+++++||+|+...  ..........   ....
T Consensus        71 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~  144 (182)
T 3bwd_D           71 -RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG---VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQ  144 (182)
T ss_dssp             -TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHH
T ss_pred             -hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEechhhhcC--cccccccccCCCCCHHH
Confidence             1222345678999999999855554443  355555554332   389999999998755  3321100000   0111


Q ss_pred             HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ..++.+.....     ..+..||.++.+++++++.+.+.+.
T Consensus       145 ~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          145 GEELKKLIGAP-----AYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             HHHHHHHHTCS-----EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCC-----EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            22333332211     1134577788999999998877653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.67  E-value=2.4e-16  Score=116.73  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=76.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ...+|+|+|++|+|||||++.|++......  ...+.+.+....... .++  ..+.++||||...           +..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~   72 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIE-LDGKRIKLQIWDTAGQER-----------FRT   72 (183)
T ss_dssp             EEEEEEEECCCCC----------------C--HHHHHCEEEEEEEEE-ETTEEEEEEEEEC-------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEE-ECCEEEEEEEEcCCCChh-----------hhh
Confidence            347999999999999999999997654111  001112222222222 233  4689999999432           222


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........+|++++|+|++++.+.... .++..+.......  .|+++|+||+|+...  +.+..       ....++.+
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~~~~  141 (183)
T 2fu5_C           73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDK--RQVSK-------ERGEKLAL  141 (183)
T ss_dssp             -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSC--CCSCH-------HHHHHHHH
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCcc--CcCCH-------HHHHHHHH
Confidence            233455788999999999854444433 3555554432222  389999999998753  22110       01222222


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .....      .+..||.++.+++++++.|.+.+.+
T Consensus       142 ~~~~~------~~~~Sa~~~~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          142 DYGIK------FMETSAKANINVENAFFTLARDIKA  171 (183)
T ss_dssp             HHTCE------EEECCC---CCHHHHHHHHHHHHHH
T ss_pred             HcCCe------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            22222      2345777889999999988777765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.67  E-value=5.8e-17  Score=136.77  Aligned_cols=164  Identities=16%  Similarity=0.099  Sum_probs=96.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+|+|++|||||||+|.|+|....  .+.....++...........+..+.++||||+.....   ...+++.....
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~   97 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---PFLAQIRQQAE   97 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC---------CCHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch---HHHHHHHHHHH
Confidence            368999999999999999999987542  1222222222222322334567899999999874322   12244444444


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      ...+.+|++++++|...+++..+....+++..     ..+|+++++||+|....  ...   ...        ....-  
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~--~~~---~~e--------~~~lg--  157 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM--RAN---IYD--------FYSLG--  157 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC--------------CC--------SGGGS--
T ss_pred             hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchhh--hhh---HHH--------HHHcC--
Confidence            45567799999999987888888776666543     12489999999998643  211   111        00000  


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                          +...+..||.++.++.+|++.+.+.+++.
T Consensus       158 ----~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  186 (456)
T 4dcu_A          158 ----FGEPYPISGTHGLGLGDLLDAVAEHFKNI  186 (456)
T ss_dssp             ----SSSEEECCTTTCTTHHHHHHHHHTTGGGS
T ss_pred             ----CCceEEeecccccchHHHHHHHHhhcccc
Confidence                01123467888899999999998877653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.67  E-value=3.5e-15  Score=122.07  Aligned_cols=170  Identities=16%  Similarity=0.089  Sum_probs=105.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ....+++++|.+|+|||||+|.|++........  ...|....... ....+..+.++||||+.+..........  ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~--~~~t~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~  239 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQ-FEDGYFRYQIIDTPGLLDRPISERNEIE--KQA  239 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECC--TTCSSCEEEEE-EEETTEEEEEEECTTTSSSCSTTSCHHH--HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCeeeceeEEE-EEecCceEEEEeCCCccccchhhhhHHH--HHH
Confidence            355799999999999999999999986421111  11222222222 2234667999999998764322111001  112


Q ss_pred             HhhccCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRF--SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~--s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      +......+|++++|+|+++..  +... ..++..+...+..   +|+++|+||+|....  ..+....+         ..
T Consensus       240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~---~piilV~NK~Dl~~~--~~~~~~~~---------~~  305 (357)
T 2e87_A          240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD---LPFLVVINKIDVADE--ENIKRLEK---------FV  305 (357)
T ss_dssp             HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT---SCEEEEECCTTTCCH--HHHHHHHH---------HH
T ss_pred             HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC---CCEEEEEECcccCCh--HHHHHHHH---------HH
Confidence            222334679999999987433  5554 4566666655432   389999999999765  44432222         22


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ....      ...+..||.++.++++|++.|.+.+...
T Consensus       306 ~~~~------~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          306 KEKG------LNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             HHTT------CCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             HhcC------CCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            2111      1234567888899999999998888663

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.67  E-value=5e-16  Score=116.92  Aligned_cols=163  Identities=15%  Similarity=0.099  Sum_probs=92.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|++|+|||||+|.|++......  .....+.+....... ..+  ..+.++||||..           .+.
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~   88 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVN-VGGKTVKLQIWDTAGQE-----------RFR   88 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEE-ETTEEEEEEEECCTTHH-----------HHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEE-ECCeeeEEEEEcCCCcH-----------hHH
Confidence            3457999999999999999999998764211  111222222222222 233  468999999921           111


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .........+|++++|+++++..+.... .++..+.......  .|+++|+||+|+...  +.+..       ....++.
T Consensus        89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~~~  157 (200)
T 2o52_A           89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPE--REVTF-------LEASRFA  157 (200)
T ss_dssp             CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHH
T ss_pred             HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc--cccCH-------HHHHHHH
Confidence            1122334578999999999854444332 3444454433322  389999999998643  22210       0112222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +...-.+      +..||.++.+++++++.|.+.+.+
T Consensus       158 ~~~~~~~------~~~SA~~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          158 QENELMF------LETSALTGENVEEAFLKCARTILN  188 (200)
T ss_dssp             HHTTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCEE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2222122      235677789999999988777654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.67  E-value=6.8e-17  Score=135.62  Aligned_cols=163  Identities=16%  Similarity=0.116  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+|+|++|+|||||+|.|+|...  ..+.....++.........+.+..+.++||||+......   +.+.+......
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~---~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP---FLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEEC--C-----------CEEEECTTCSSCCEEEC---------C---HHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh---HHHHHHHHHHH
Confidence            4899999999999999999998754  112222223322233333355677999999998632211   22334444444


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ..+.+|++++++|+..+++..+..+.+++..     ..+|+++++||+|....  ..   ....     +   ... .  
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~--~~---~~~~-----~---~~l-g--  137 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM--RA---NIYD-----F---YSL-G--  137 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC----------CCCS-----S---GGG-S--
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc--hh---hHHH-----H---HHc-C--
Confidence            4567799999999988888877665444432     12489999999998643  21   0111     1   010 0  


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                         +...+..||.++.++.+|++.+.+.+++.
T Consensus       138 ---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          138 ---FGEPYPISGTHGLGLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             ---SCCCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred             ---CCCeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence               11335678889999999999999888753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=1.5e-15  Score=113.82  Aligned_cols=171  Identities=17%  Similarity=0.131  Sum_probs=95.8

Q ss_pred             CCCccCC-CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCC
Q 027090            8 GDWKPTS-PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSA   84 (228)
Q Consensus         8 ~~~~~~~-~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~   84 (228)
                      .+|...+ +..+..+|+|+|.+|+|||||++.|++.....    ....|............+  ..+.++||||...   
T Consensus        16 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---   88 (196)
T 2atv_A           16 ENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIW----EYDPTLESTYRHQATIDDEVVSMEILDTAGQED---   88 (196)
T ss_dssp             -----------CCEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---
T ss_pred             cccchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCc----ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---
Confidence            3444332 33556899999999999999999999876421    112222222221112233  4589999999765   


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~  163 (228)
                       .    .....++.    .+|++++|+|+++.-+.... .++..+...... ...|+++|+||+|+...  +.+..    
T Consensus        89 -~----~~~~~~~~----~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~--~~v~~----  152 (196)
T 2atv_A           89 -T----IQREGHMR----WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHS--RQVST----  152 (196)
T ss_dssp             -C----HHHHHHHH----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGG--CCSCH----
T ss_pred             -c----cchhhhhc----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccc--cccCH----
Confidence             1    12222332    45999999999854444333 345555544321 12389999999998653  22210    


Q ss_pred             cCCchHHHHHHhcCCeEEEeeCCCcccccchH-HHHHHHHHHHHHHHh
Q 027090          164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ  210 (228)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~~~  210 (228)
                         ....++.+.....      .+..|+.++. +++++++.|.+.+.+
T Consensus       153 ---~~~~~~~~~~~~~------~~~~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          153 ---EEGEKLATELACA------FYECSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             ---HHHHHHHHHHTSE------EEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhCCe------EEEECCCcCCcCHHHHHHHHHHHHHh
Confidence               0111222222211      2234667778 999999988777655

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.67  E-value=3.8e-16  Score=116.64  Aligned_cols=163  Identities=13%  Similarity=0.085  Sum_probs=95.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|++|+|||||+|.|++......  .....+.+....... .++  ..+.++||||.......         
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~---------   86 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVN-IDGKQIKLQIWDTAGQESFRSI---------   86 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEE-ETTEEEEEEEECCTTGGGTSCC---------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEE-ECCEEEEEEEEECCCchhhhhh---------
Confidence            3457899999999999999999998764211  111222222222222 233  46899999995432211         


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                        .......+|++++|+|+++..+... ..++..+.......  .|+++++||+|+...  +.+..       ....++.
T Consensus        87 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~~~  153 (191)
T 2a5j_A           87 --TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESR--RDVKR-------EEGEAFA  153 (191)
T ss_dssp             --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred             --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCc--cccCH-------HHHHHHH
Confidence              1122346799999999985444443 23555554433222  389999999998653  22210       0112222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +.....+      +..||.++.+++++++.|.+.+.+
T Consensus       154 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          154 REHGLIF------METSAKTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             HHHTCEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCEE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2222222      234667789999999988776655

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.67  E-value=2.1e-16  Score=116.98  Aligned_cols=164  Identities=15%  Similarity=0.086  Sum_probs=96.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+..+|+|+|++|+|||||+|.+++........     |........ ..++..+.++||||......           .
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~   78 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETL-SYKNLKLNVWDLGGQTSIRP-----------Y   78 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEE-EETTEEEEEEEEC----CCT-----------T
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-----cCccceEEE-EECCEEEEEEECCCCHhHHH-----------H
Confidence            456899999999999999999999765422211     111111222 23567899999999654321           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|+|+++.-+..... ++..+..... ....|+++++||+|+...  ....+..+....       ..
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~-------~~  148 (183)
T 1moz_A           79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA--LSASEVSKELNL-------VE  148 (183)
T ss_dssp             GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC--CCHHHHHHHTTT-------TT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCCCC--CCHHHHHHHhCc-------cc
Confidence            223456789999999998666655433 3333322110 122489999999998654  322222111000       00


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +....+   ..+..|+.++.+++++++.|.+.+.+
T Consensus       149 ~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          149 LKDRSW---SIVASSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             CCSSCE---EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             ccCCce---EEEEccCCCCcCHHHHHHHHHHHHHh
Confidence            111100   12345778889999999999888765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.67  E-value=6.4e-16  Score=112.79  Aligned_cols=162  Identities=20%  Similarity=0.108  Sum_probs=89.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|++|+|||||+|.|++.......  ....+.+....... .++  ..+.++||||......       .+   .
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~-------~~---~   69 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGG-------WL---Q   69 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE-ETTEEEEEEEECCCCC------------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEE-ECCeEEEEEEEECCCccccch-------hh---h
Confidence            68999999999999999999876542111  11222222222222 233  3578999999654321       01   1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|++++++-+.... .++..+...... ...|+++++||+|+...  +.+..       ....++.+..
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~--~~~~~-------~~~~~~~~~~  139 (169)
T 3q85_A           70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS--REVSL-------EEGRHLAGTL  139 (169)
T ss_dssp             CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGG--CCSCH-------HHHHHHHHHT
T ss_pred             hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhc--ccCCH-------HHHHHHHHHc
Confidence            1112246999999999854444333 344444443221 12489999999998643  22211       0122233333


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...+      +..||.++.+++++++.+.+.+..
T Consensus       140 ~~~~------~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          140 SCKH------IETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             TCEE------EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCcE------EEecCccCCCHHHHHHHHHHHHHh
Confidence            2222      345777889999999999887765

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.67  E-value=3.7e-16  Score=123.07  Aligned_cols=162  Identities=17%  Similarity=0.170  Sum_probs=95.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~   97 (228)
                      ..+|+|+|++|||||||+|+|+|.... .+.. .+.|......... . +..+.++||||..........  +.+. .++
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~-pg~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~~--e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNW-PGVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSPE--AKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSS-SCCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSHH--HHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCC-CCCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCChH--HHHHHHHH
Confidence            368999999999999999999997632 1211 1233332222222 2 567999999998765432211  1222 222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ..  ..+|++++|+|+++ +    .+.+.+...+....  .|+++++||+|....  ..+.        .....+.+..+
T Consensus        77 ~~--~~~d~vi~V~D~t~-~----e~~~~~~~~l~~~~--~p~ilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg  137 (272)
T 3b1v_A           77 LS--QRADSILNVVDATN-L----ERNLYLTTQLIETG--IPVTIALNMIDVLDG--QGKK--------INVDKLSYHLG  137 (272)
T ss_dssp             HT--TCCSEEEEEEEGGG-H----HHHHHHHHHHHHTC--SCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHT
T ss_pred             hc--CCCCEEEEEecCCc-h----HhHHHHHHHHHhcC--CCEEEEEEChhhCCc--CCcH--------HHHHHHHHHcC
Confidence            21  46899999999973 1    11122222222112  379999999997643  2211        11233333322


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .      ..+..||.++.+++++++.|.+.+...
T Consensus       138 ~------~vi~~SA~~g~gi~el~~~i~~~~~~~  165 (272)
T 3b1v_A          138 V------PVVATSALKQTGVDQVVKKAAHTTTST  165 (272)
T ss_dssp             S------CEEECBTTTTBSHHHHHHHHHHSCTTT
T ss_pred             C------CEEEEEccCCCCHHHHHHHHHHHHhhc
Confidence            1      234467788899999999988876543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=1.8e-16  Score=118.36  Aligned_cols=164  Identities=14%  Similarity=0.066  Sum_probs=95.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      +..+|+|+|++|+|||||+|.|++.....  ......+.+........ .....+.++||||.......       ..  
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~--   82 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDP--ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL-------TP--   82 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-------HH--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-------hH--
Confidence            44799999999999999999999876421  11112222222222221 12346899999995432211       11  


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                        .....+|++++|++++...+.... .++..+...... ...|+++|+||+|+...  ......        ..++.+.
T Consensus        83 --~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~  149 (195)
T 1x3s_A           83 --SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR-NDIVNMLVGNKIDKENR--EVDRNE--------GLKFARK  149 (195)
T ss_dssp             --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSC-SCCEEEEEEECTTSSSC--CSCHHH--------HHHHHHH
T ss_pred             --HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc-CCCcEEEEEECCcCccc--ccCHHH--------HHHHHHH
Confidence              223467999999999854443332 334444332211 12489999999998543  211111        1222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ....      .+..++.++.+++++++.|.+.+.+.
T Consensus       150 ~~~~------~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          150 HSML------FIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             TTCE------EEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             cCCE------EEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            2212      13456777899999999998888764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.67  E-value=6.5e-16  Score=113.71  Aligned_cols=166  Identities=16%  Similarity=0.049  Sum_probs=96.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC---cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      ....+|+|+|++|+|||||+|.|++........  .+.+.+....... ..+   ..+.++||||.......       .
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~-------~   73 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYK--QTIGLDFFLRRIT-LPGNLNVTLQIWDIGGQTIGGKM-------L   73 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHH--HTTTSSEEEEEEE-ETTTEEEEEEEEECTTCCTTCTT-------H
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCC--CceeEEEEEEEEE-eCCCCEEEEEEEECCCCccccch-------h
Confidence            345799999999999999999999876421110  1111122222222 222   56899999996543211       1


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcccccc-EEEEEeCCCCCccchhhHHHHhhccCCchHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE  171 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~-~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ..    ....+|++++|+|+++..+.... .++..+..........| +++|+||+|+...  +.+..       ....+
T Consensus        74 ~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~-------~~~~~  140 (178)
T 2hxs_A           74 DK----YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM--RTIKP-------EKHLR  140 (178)
T ss_dssp             HH----HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG--CSSCH-------HHHHH
T ss_pred             hH----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc--cccCH-------HHHHH
Confidence            11    23467999999999854444333 34555544322111124 7889999998653  22110       01222


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +.+...-.+      +..||.++.+++++++.|.+.+.+.
T Consensus       141 ~~~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          141 FCQENGFSS------HFVSAKTGDSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHTCEE------EEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCcE------EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            222222122      3457778899999999998887664

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.66  E-value=1.1e-16  Score=133.10  Aligned_cols=172  Identities=19%  Similarity=0.178  Sum_probs=105.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      +.....+|+|+|+.|+|||||+|+|++....... .....|++.............+.++||||+.+.........+...
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence            3455689999999999999999999987642111 112333333333333223348999999999876543222112222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .+    ...+|++++|+|+  .....+..++..+...   .  .|+++|+||+|....  ... +..+.        +.+
T Consensus       109 ~~----l~~aD~vllVvD~--~~~~~~~~~l~~l~~~---~--~piIvV~NK~Dl~~~--~~~-~~~~~--------l~~  166 (423)
T 3qq5_A          109 RV----FYRADCGILVTDS--APTPYEDDVVNLFKEM---E--IPFVVVVNKIDVLGE--KAE-ELKGL--------YES  166 (423)
T ss_dssp             HH----HTSCSEEEEECSS--SCCHHHHHHHHHHHHT---T--CCEEEECCCCTTTTC--CCT-HHHHH--------SSC
T ss_pred             HH----HhcCCEEEEEEeC--CChHHHHHHHHHHHhc---C--CCEEEEEeCcCCCCc--cHH-HHHHH--------HHH
Confidence            22    3467999999998  4666677777777654   2  379999999998765  332 11111        111


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCC
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP  215 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~  215 (228)
                      ..+      ...+..||.++.+++++++.|.+.+++....+
T Consensus       167 ~~g------~~v~~vSAktg~gI~eL~~~L~~~l~~~~e~~  201 (423)
T 3qq5_A          167 RYE------AKVLLVSALQKKGFDDIGKTISEILPGDEEIP  201 (423)
T ss_dssp             CTT------CCCCCCSSCCTTSTTTHHHHHHHHSCCCCCCC
T ss_pred             HcC------CCEEEEECCCCCCHHHHHHHHHHhhhhhccCc
Confidence            111      14566788899999999999999987654434

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.66  E-value=8.5e-16  Score=113.83  Aligned_cols=164  Identities=16%  Similarity=0.107  Sum_probs=95.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ....+|+++|++|+|||||++.|++......     ..|........ ..++..+.++||||....           ...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~   76 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSV-QSQGFKLNVWDIGGQRKI-----------RPY   76 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEE-EETTEEEEEEECSSCGGG-----------HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEE-EECCEEEEEEECCCCHHH-----------HHH
Confidence            4568999999999999999999998753111     11111111222 245678999999994321           112


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|+|++++-+..... ++..+..... ....|+++++||+|....  ....+..+...       ...
T Consensus        77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~-------~~~  146 (181)
T 1fzq_A           77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEGLN-------LHT  146 (181)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHHTT-------GGG
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC--CCHHHHHHHhC-------chh
Confidence            223345779999999998655554432 3333322111 122489999999998765  33322222100       001


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +....+   ..+..||.++.+++++++.|.+.+.+
T Consensus       147 ~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          147 IRDRVW---QIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CCSSCE---EEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             ccCCce---EEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            111111   12345788889999999998776544

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.66  E-value=7.8e-17  Score=135.56  Aligned_cols=163  Identities=17%  Similarity=0.157  Sum_probs=95.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+.+|+|+|++|+|||||+|+|++.....  ......|+..........++..+.++||||+.+.....+   ..-....
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~--v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve---~~gi~~~  297 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI--VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVE---KIGVERS  297 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSC--CSCCTTCCHHHHHHEEEETTEEEEECC----------------------
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCccc--ccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHH---HHHHHHH
Confidence            34689999999999999999999865311  122222322221111235677899999999865321111   1111222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ......+|++++|+|++.+.+..+..+++.+.    .   +|+++|+||+|+...  .... .++.     +      ..
T Consensus       298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~---~piivV~NK~Dl~~~--~~~~-~~~~-----~------~~  356 (462)
T 3geh_A          298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVK----H---RPLILVMNKIDLVEK--QLIT-SLEY-----P------EN  356 (462)
T ss_dssp             -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----T---SCEEEEEECTTSSCG--GGST-TCCC-----C------TT
T ss_pred             hhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----C---CcEEEEEECCCCCcc--hhhH-HHHH-----h------cc
Confidence            23457889999999999888887766555442    2   279999999998765  3322 1111     0      00


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .     ...+..|+.++.++++|++.|.+.+...
T Consensus       357 ~-----~~~i~iSAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          357 I-----TQIVHTAAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             C-----CCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred             C-----CcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            0     1224467778889999999998887764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.66  E-value=7.6e-16  Score=129.38  Aligned_cols=174  Identities=20%  Similarity=0.248  Sum_probs=99.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc-HHH----HHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFV----GKE   92 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~-~~~----~~~   92 (228)
                      ...+++|+|++|||||||+|+|+|.....  ....+.|+..........++..+.++||||+....... +..    ...
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~--v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERAL--VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEE--ECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccc--cCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            45799999999999999999999986421  22223333322222233567788999999974322111 000    000


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ...++    ..+|++++++++..+.+..+......+.. .+    +|+++++||+|+..........+.+.     +.+.
T Consensus       257 ~~~~i----~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~  322 (439)
T 1mky_A          257 VVDSI----EKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTKL-----FREK  322 (439)
T ss_dssp             HHHHH----HHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHHH
T ss_pred             HHHHH----hhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHHH-----HHHH
Confidence            11122    34599999999987788776554444432 11    37999999999875411113222222     1111


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      ......     ...+..||.++.++++|++.+.+.+....
T Consensus       323 ~~~~~~-----~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          323 LYFIDY-----SPLIFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             CGGGTT-----SCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             hccCCC-----CcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            111111     12234688889999999999988887643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.66  E-value=1.7e-15  Score=112.59  Aligned_cols=169  Identities=17%  Similarity=0.125  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH----
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK----   95 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~----   95 (228)
                      .+|+|+|++|+|||||+|.|++..... .. ..+.|.......   ..  .+.++||||+...........+.+..    
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~-~~~~t~~~~~~~---~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRR-GK-RPGVTRKIIEIE---WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSS-SS-STTCTTSCEEEE---ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCcc-CC-CCCccceeEEEe---cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            489999999999999999999886421 11 112232222211   12  68899999976654433222222222    


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHH--HHHHH---------HHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVH---------RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~--~~~l~---------~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~  164 (228)
                      ++......+++++++++..   +...  ..+..         +........  .|+++|+||+|....  .  ....   
T Consensus        75 ~~~~~~~~~~~v~~v~d~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~~---  142 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK---AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEVI---  142 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT---HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHHH---
T ss_pred             HHHhhhccCCEEEEEEcch---hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHHH---
Confidence            2222134567788888765   2222  12221         222211112  389999999998765  3  1111   


Q ss_pred             CCchHHHHHHhcCCeEEE-eeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          165 CPKPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                           +++.+.....+.. ....+..||.++.+++++++.|.+.+.+..
T Consensus       143 -----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          143 -----NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             -----HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             -----HHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence                 1222222211000 001245677888999999999988887743

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.66  E-value=3.3e-16  Score=118.17  Aligned_cols=163  Identities=13%  Similarity=0.033  Sum_probs=71.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC--CcccccCCCCCccee--eEeEeeeeeC----CcEEEEEeCCCCCCCCCCcHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTKT--CEMKTTVLKD----GQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~--~~~~~~~~~~~~t~~--~~~~~~~~~~----~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      ....+|+|+|++|+|||||+|.|++.  ..    ......|+.  ....... ..    ...+.++||||.         
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~---------   83 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKF----LKDYAMTSGVEVVVAPVT-IPDTTVSVELFLLDTAGS---------   83 (208)
T ss_dssp             EEEEEEEEC--------------------------------------CEEEE-CTTSSEEEEEEEEETTTT---------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcc----cCCCCCccceEEEEEEEE-ECCcccEEEEEEEECCCc---------
Confidence            34579999999999999999999987  33    112222322  2222222 23    346899999993         


Q ss_pred             HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-cccccEEEEEeCCCCCc-cchhhHHHHhhccC
Q 027090           89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLE-DHEKTLEDFLGHEC  165 (228)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~-~~~~~~llv~~~~D~~~-~~~~~~~~~~~~~~  165 (228)
                        .++..........+|++++|+|+++..+... ..++..+...... ....|+++|+||+|+.. .  +.+.       
T Consensus        84 --~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~~v~-------  152 (208)
T 2yc2_C           84 --DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQR--HQVR-------  152 (208)
T ss_dssp             --HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------CCC-------
T ss_pred             --HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhh--ccCC-------
Confidence              2233444556678999999999985555444 3455555554320 01238999999999875 3  2211       


Q ss_pred             CchHHHHHHhcCCeEEEeeCCCcccccc-hHHHHHHHHHHHHHHHh
Q 027090          166 PKPLKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~i~~~~~~  210 (228)
                      .....++.+.....      .+..|+.+ +.+++++++.|.+.+.+
T Consensus       153 ~~~~~~~~~~~~~~------~~~~Sa~~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          153 LDMAQDWATTNTLD------FFDVSANPPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             HHHHHHHHHHTTCE------EEECCC-------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCE------EEEeccCCCCcCHHHHHHHHHHHHHH
Confidence            01122333333311      23456777 88999999988877665

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.66  E-value=2.7e-15  Score=127.19  Aligned_cols=166  Identities=17%  Similarity=0.211  Sum_probs=105.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcc----c-ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAF----K-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~----~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      +..+|+++|+.++|||||+++|++....    . ........|.+....... .++..+.++||||.           .+
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~iiDtPGh-----------~~   85 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGH-----------AD   85 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSH-----------HH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-ECCEEEEEEECCCh-----------HH
Confidence            3479999999999999999999987610    0 001122344444333322 35678999999993           23


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      +...+......+|++++++|++++........+.++... +-    |.++++||+|....  +.+....++     +.++
T Consensus        86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~~  153 (482)
T 1wb1_A           86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-NI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSI  153 (482)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-CC----CEEEEEECCCcccc--hhHHHHHHH-----HHHH
Confidence            444444555678999999999877777777777665542 22    57899999999865  555444443     4444


Q ss_pred             HHhc-CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          173 LQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .... ...   ....++.||.++.++++|++.|.+.++.
T Consensus       154 l~~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          154 LQSTHNLK---NSSIIPISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             HHHSSSGG---GCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             Hhhhcccc---cceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence            4332 100   0122445777889999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.65  E-value=2.2e-16  Score=119.77  Aligned_cols=171  Identities=18%  Similarity=0.100  Sum_probs=101.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|.+|+|||||++.+++....    .....|+..........++  ..+.++||||......          
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------   72 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP----TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR----------   72 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC----ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH----------
Confidence            34589999999999999999999976542    1112222222111111222  4689999999754322          


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc-cCCchHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-ECPKPLKE  171 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~-~~~~~~~~  171 (228)
                       ........+|++++|+|+++.-+....  .++..+......   .|+++|+||+|+...  ..+...... .......+
T Consensus        73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~  146 (212)
T 2j0v_A           73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN---VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE  146 (212)
T ss_dssp             ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred             -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence             122345678999999999855444443  355666554322   389999999998654  332110000 00111223


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      +.+.....     ..+..||.++.+++++++.|.+.+.+..
T Consensus       147 ~~~~~~~~-----~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          147 LRKQIGAA-----AYIECSSKTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             HHHHHTCS-----EEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred             HHHHcCCc-----eEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence            33332211     1234577788999999999988877643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.65  E-value=4.6e-16  Score=114.48  Aligned_cols=161  Identities=16%  Similarity=0.099  Sum_probs=93.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|++|+|||||+|.|++.....  ......+.+....... ..+  ..+.++||||.....       ..+.  
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~-------~~~~--   81 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFR-------SLIP--   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGG-------GGSH--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHH-------HHHH--
Confidence            3789999999999999999999765421  1122233233222222 233  368999999943221       1111  


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                        .....+|++++|+++++..+... ..++..+.......  .|+++|+||+|+...  +.+...       ........
T Consensus        82 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~  148 (179)
T 2y8e_A           82 --SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDK--RQVSTE-------EGERKAKE  148 (179)
T ss_dssp             --HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred             --HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc--CcCCHH-------HHHHHHHH
Confidence              22246799999999985444333 23455454443322  389999999998654  322110       01122222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ....+      +..|+.++.+++++++.|.+.+.+
T Consensus       149 ~~~~~------~~~Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          149 LNVMF------IETSAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             HTCEE------EEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred             cCCeE------EEEeCCCCCCHHHHHHHHHHHHhh
Confidence            22222      334667778999999988776543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.65  E-value=1.2e-15  Score=114.13  Aligned_cols=169  Identities=9%  Similarity=0.028  Sum_probs=97.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC------CCCCcceeeEeEeee--ee--CCcEEEEEeCCCCCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTKTCEMKTTV--LK--DGQVVNVIDTPGLFDLSAG   85 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~------~~~~~t~~~~~~~~~--~~--~~~~~~~iDtpG~~~~~~~   85 (228)
                      .....+|+|+|++|+|||||++.+.+........      .....|.........  ..  ....+.++||||.....  
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--   88 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--   88 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS--
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH--
Confidence            3445799999999999999999998765421110      001122222221111  11  23358999999965431  


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC----ccccccEEEEEeCCCCCccchhhHHHHh
Q 027090           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~----~~~~~~~llv~~~~D~~~~~~~~~~~~~  161 (228)
                           .    ........+|++++|+|++...+......++.+...+.    .....|+++|+||+|+...  ....+  
T Consensus        89 -----~----~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~--  155 (198)
T 3t1o_A           89 -----A----SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM--  155 (198)
T ss_dssp             -----H----HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH--
T ss_pred             -----H----HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH--
Confidence                 1    12223457799999999984444444443333333221    1123489999999998654  22222  


Q ss_pred             hccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                             ..++.+....     ...+..||.++.+++++++.|.+.+.+.
T Consensus       156 -------~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          156 -------VRAVVDPEGK-----FPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             -------HHHHHCTTCC-----SCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHhcCC-----ceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence                   1122221111     0223467888899999999988877653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.64  E-value=1e-15  Score=127.21  Aligned_cols=170  Identities=14%  Similarity=0.097  Sum_probs=101.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccC------------CCCCcceeeEeEeee----eeCCcEEEEEeCCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFK-ASA------------GSSGVTKTCEMKTTV----LKDGQVVNVIDTPGL   79 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~------------~~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~   79 (228)
                      .+..+|+++|+.|+|||||+|+|++..... .+.            .....+.........    ......+.++||||.
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            445899999999999999999999853211 000            000000000000000    011256899999994


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHH
Q 027090           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE  158 (228)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~  158 (228)
                      .+           +...+......+|++++++++.++. ......++.++... +.+   |+++++||+|+...  .+..
T Consensus        86 ~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~---~iivviNK~Dl~~~--~~~~  148 (403)
T 3sjy_A           86 EV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVK---NLIIVQNKVDVVSK--EEAL  148 (403)
T ss_dssp             GG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH--HHHH
T ss_pred             HH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCC---CEEEEEECccccch--HHHH
Confidence            22           2222333345679999999999776 44555566555443 332   79999999999866  5554


Q ss_pred             HHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ...+.     +.+........   ....+..||.++.++++|++.|.+.++..
T Consensus       149 ~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          149 SQYRQ-----IKQFTKGTWAE---NVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             HHHHH-----HHHHHTTSTTT---TCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHH-----HHHHHHhhCCC---CCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            44443     33333221110   01234567888899999999999877653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.64  E-value=7.5e-15  Score=108.10  Aligned_cols=161  Identities=19%  Similarity=0.127  Sum_probs=93.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      .+..+|+|+|++|+|||||++.+++.....     ...|...........++  ..+.++||||...            .
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~   67 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-----LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------A   67 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-----CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------H
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-----cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------h
Confidence            355899999999999999999999876522     11222221111112233  3578999999543            1


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      .++    +.+|++++|+|++++.|..... +++.+...... ....|+++|.||+|+.....+.+.       .....++
T Consensus        68 ~~~----~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~~~  136 (178)
T 2iwr_A           68 KFS----GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG-------DARARAL  136 (178)
T ss_dssp             HHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSC-------HHHHHHH
T ss_pred             HHH----HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCC-------HHHHHHH
Confidence            122    2459999999998655555443 44445444321 112389999999998421001111       0012222


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+.....     ..+..||.++.+++++++.+.+.+..
T Consensus       137 ~~~~~~~-----~~~~~Sa~~~~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          137 XADMKRC-----SYYETXATYGLNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             HHHHSSE-----EEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHhhcCC-----eEEEEeccccCCHHHHHHHHHHHHHH
Confidence            2222111     12345677889999999988776654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.64  E-value=1.3e-15  Score=113.78  Aligned_cols=166  Identities=11%  Similarity=0.022  Sum_probs=94.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+..+|+++|++|+|||||++.+++.....     ...|....... ...++..+.++||||.....           ..
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~~-----------~~   83 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEE-LAIGNIKFTTFDLGGHIQAR-----------RL   83 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEE-EEETTEEEEEEECCCSGGGT-----------TS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEE-EEECCEEEEEEECCCCHHHH-----------HH
Confidence            445799999999999999999999875421     12222222222 22456789999999954321           11


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .......+|++++|+|++++-+..... ++..+..... ....|+++++||+|+.... .+++.+.+....... +..  
T Consensus        84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~--  159 (190)
T 1m2o_B           84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG-SQR--  159 (190)
T ss_dssp             GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC------
T ss_pred             HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccc-ccc--
Confidence            223456789999999998665555433 3333332211 1224899999999986530 022222222100000 000  


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      ......+   ..+..||.++.+++++++.|.+
T Consensus       160 ~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          160 IEGQRPV---EVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             CCSSCCE---EEEECBTTTTBSHHHHHHHHHT
T ss_pred             ccccceE---EEEEeECCcCCCHHHHHHHHHh
Confidence            0000101   1234688888999999998764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.64  E-value=2.3e-15  Score=121.80  Aligned_cols=163  Identities=11%  Similarity=0.018  Sum_probs=96.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      +..+|+|+|.+|+|||||++.|++......     ..|........ ......+.++||||.....           ...
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~  226 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNISFTVWDVGGQDKIR-----------PLW  226 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEE-EETTEEEEEEECC-----C-----------CSH
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEE-ecCcEEEEEEECCCCHhHH-----------HHH
Confidence            446899999999999999999998764221     12333333322 2466789999999933221           112


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|+|+++.-+..... ++..+..... ....|+++|+||+|+...  .........+..       ...
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~--~~~~~i~~~~~~-------~~~  296 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDKLGL-------HSL  296 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHHHTC-------TTC
T ss_pred             HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc--cCHHHHHHHhch-------hhh
Confidence            22345679999999998666655433 2222222111 112389999999998765  433332222000       001


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ....+   ..+..||.++.+++++++.|.+.+.+
T Consensus       297 ~~~~~---~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          297 RHRNW---YIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             CSSCE---EEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             hcCCC---EEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            11101   12345778889999999999887765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.64  E-value=3e-15  Score=112.52  Aligned_cols=169  Identities=11%  Similarity=0.030  Sum_probs=91.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+..+|+++|++|||||||++.+++......     ..|....... ...++..+.++||||.....           ..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~   85 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-----VPTLHPTSEE-LTIAGMTFTTFDLGGHIQAR-----------RV   85 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEE-EEETTEEEEEEEECC----C-----------CG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-----CCCCCceeEE-EEECCEEEEEEECCCcHhhH-----------HH
Confidence            4457899999999999999999998764211     1121111122 22455789999999944321           12


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHHH---
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKE---  171 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~~---  171 (228)
                      .......+|++++|+|++++-+.... .++..+..... ....|+++|+||+|+.... .+++.+.+.......-..   
T Consensus        86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (198)
T 1f6b_A           86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS  164 (198)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccc
Confidence            22344578999999999865555443 33433332211 1224899999999986430 122222222100000000   


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      +.+.....+    ..+..||.++.+++++++.|.+.
T Consensus       165 ~~~~~~~~~----~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          165 LKELNARPL----EVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             TTTCCSCCE----EEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cccccCceE----EEEEEECCCCCCHHHHHHHHHHh
Confidence            000000111    22446888899999999987653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.64  E-value=2.2e-15  Score=113.07  Aligned_cols=169  Identities=20%  Similarity=0.116  Sum_probs=95.0

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      .+.....+|+|+|.+|||||||+|.|++........  ...+.+...... ..++  ..+.++||||.....       .
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~i~Dt~g~~~~~-------~   87 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRI-MVDKEEVTLVVYDIWEQGDAG-------G   87 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT--TTSCTTEEEEEE-EETTEEEEEEEECCCCCSGGG-------H
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC--CCcccceEEEEE-EECCEEEEEEEEecCCCccch-------h
Confidence            344556899999999999999999998654311111  111211111111 1233  347889999964310       1


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      .+..   ......|++++|+++++.-|.... .++..+...... ...|+++|.||+|+...  +.+..  .     ...
T Consensus        88 ~~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~v~~--~-----~~~  154 (195)
T 3cbq_A           88 WLRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS--REVSL--E-----EGR  154 (195)
T ss_dssp             HHHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTT--CCSCH--H-----HHH
T ss_pred             hhHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhcccc--CCcCH--H-----HHH
Confidence            1111   122356999999999855444433 355444443221 12389999999998654  22210  0     122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ++.+.....      .+..||.++.+++++++.+.+.+...
T Consensus       155 ~~a~~~~~~------~~e~Sa~~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          155 HLAGTLSCK------HIETSAALHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHTTCE------EEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCE------EEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence            233322211      23457778899999999998877654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1e-15  Score=117.12  Aligned_cols=163  Identities=18%  Similarity=0.116  Sum_probs=95.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ...+|+|+|++|+|||||++.|++......  .....+.+....... ..+  ..+.++||||......           
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~-----------   77 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD--SKSTIGVEFATRTLE-IEGKRIKAQIWDTAGQERYRA-----------   77 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEE-ETTEEEEEEEECCTTTTTTTC-----------
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEE-ECCEEEEEEEEECCCccchhh-----------
Confidence            347999999999999999999998764211  111222222222222 233  4689999999544321           


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........+|++++|++++...+.... .++..+.......  .|+++|+||+|+...  +.+..       ....++.+
T Consensus        78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~~~~  146 (223)
T 3cpj_B           78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHL--RAVPT-------EESKTFAQ  146 (223)
T ss_dssp             CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGG--CCSCH-------HHHHHHHH
T ss_pred             hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCH-------HHHHHHHH
Confidence            122345678999999999855554443 3455555443222  389999999998653  22210       01222332


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .....+      +..||.++.+++++++.|.+.+.+.
T Consensus       147 ~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~~  177 (223)
T 3cpj_B          147 ENQLLF------TETSALNSENVDKAFEELINTIYQK  177 (223)
T ss_dssp             HTTCEE------EECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred             HcCCEE------EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            222111      2346777899999999988877653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.63  E-value=5.1e-15  Score=123.22  Aligned_cols=171  Identities=15%  Similarity=0.204  Sum_probs=97.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeee--------------C--------CcEE
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLK--------------D--------GQVV   71 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~   71 (228)
                      +.++..+|+++|+.++|||||+++|+|..... ........|...........              .        ...+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            34556899999999999999999999764211 11111233443322111100              1        1568


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090           72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (228)
Q Consensus        72 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~  150 (228)
                      .++||||.           .++...+......+|+++++++++++. .....+.+..+.. ++.+   |+++++||+|+.
T Consensus        84 ~iiDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~---~iivv~NK~Dl~  148 (408)
T 1s0u_A           84 SFVDSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGID---KIIIVQNKIDLV  148 (408)
T ss_dssp             EEEECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CEEEEEECTTSS
T ss_pred             EEEECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCC---eEEEEEEccCCC
Confidence            99999992           344445555556889999999998665 5556665555443 2332   799999999987


Q ss_pred             ccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..  .+.....++     +.++++.....   ....+..||.++.++++|++.|.+.++.
T Consensus       149 ~~--~~~~~~~~~-----i~~~l~~~~~~---~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          149 DE--KQAEENYEQ-----IKEFVKGTIAE---NAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             CT--TTTTTHHHH-----HHHHHTTSTTT---TCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             CH--HHHHHHHHH-----HHHHHhhcCCC---CCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            65  322111111     22222211000   0122446788889999999999987764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.63  E-value=3.1e-15  Score=113.83  Aligned_cols=160  Identities=14%  Similarity=0.131  Sum_probs=93.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeeeeC-----------CcEEEEEeCCCCCCCCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD-----------GQVVNVIDTPGLFDLSAG   85 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~~iDtpG~~~~~~~   85 (228)
                      ..+|+|+|+.|+|||||+|.|++....    .....|....  ........           ...+.++||||.      
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------   94 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFN----PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------   94 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCC----CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH------
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCC----cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc------
Confidence            468999999999999999999987541    1111222111  11111111           346899999991      


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~  163 (228)
                           ..+..........+|++++|+|++...+.....  .++..+....  ...|+++|+||+|+...  +.+..    
T Consensus        95 -----~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~--~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~----  161 (217)
T 2f7s_A           95 -----ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR--NWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE----  161 (217)
T ss_dssp             -----HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHH--HHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH----
T ss_pred             -----HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCcCCCCEEEEEECCccccc--cccCH----
Confidence                 223333334456789999999998544433322  2232222111  22489999999998653  22210    


Q ss_pred             cCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                         ....++.+...-.+      +..++.++.+++++++.|.+.+.+
T Consensus       162 ---~~~~~~~~~~~~~~------~~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          162 ---RQARELADKYGIPY------FETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             ---HHHHHHHHHTTCCE------EEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHCCCcE------EEEECCCCCCHHHHHHHHHHHHHH
Confidence               01222333322222      345667788999999888776654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.63  E-value=8.6e-16  Score=129.79  Aligned_cols=160  Identities=17%  Similarity=0.205  Sum_probs=99.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCC-CCCCCcHHH-HHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFV-GKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~-~~~~~~~~~-~~~~~~~   96 (228)
                      +.+|+|+|.+|+|||||+|+|++....  .+...+.|+..........++..+.++||||+. +.....+.. .+.....
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a--~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRA--IVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBC--CCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCC--ccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            368999999999999999999987531  122233333322222233567789999999987 543221110 0111222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      +    ..+|++++|+|+++..+..+.+.++.+    ..   +|+++|+||+|+...  .....         +.+.   +
T Consensus       321 ~----~~aD~vl~VvD~s~~~s~~~~~il~~l----~~---~piivV~NK~DL~~~--~~~~~---------~~~~---~  375 (482)
T 1xzp_A          321 I----EKADIVLFVLDASSPLDEEDRKILERI----KN---KRYLVVINKVDVVEK--INEEE---------IKNK---L  375 (482)
T ss_dssp             H----HHCSEEEEEEETTSCCCHHHHHHHHHH----TT---SSEEEEEEECSSCCC--CCHHH---------HHHH---H
T ss_pred             h----hcccEEEEEecCCCCCCHHHHHHHHHh----cC---CCEEEEEECcccccc--cCHHH---------HHHH---h
Confidence            3    355999999999877787766554432    22   389999999998643  22211         1111   1


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ...    ...+..||.++.++++|++.|.+.+.
T Consensus       376 ~~~----~~~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          376 GTD----RHMVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             TCS----TTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             cCC----CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            110    12245678888999999998887644

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.63  E-value=5e-15  Score=123.38  Aligned_cols=170  Identities=12%  Similarity=0.179  Sum_probs=103.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCCcceeeEeEeeeee--------------C--------CcEEE
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLK--------------D--------GQVVN   72 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~   72 (228)
                      .++..+|+++|+.++|||||+++|+|..... ........|....+......              .        ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            3445799999999999999999999764211 11111233443322211100              0        15689


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090           73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (228)
Q Consensus        73 ~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~  151 (228)
                      ++||||.           .++...+......+|++++|++++++. .......+..+..+ +.+   |+++++||+|...
T Consensus        87 iiDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~---~iivviNK~Dl~~  151 (410)
T 1kk1_A           87 FIDAPGH-----------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVD  151 (410)
T ss_dssp             EEECSSH-----------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSC
T ss_pred             EEECCCh-----------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCC---cEEEEEECccCCC
Confidence            9999992           334444444455779999999998665 55666666555433 333   7999999999886


Q ss_pred             cchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .  .+.....++     +.++.......   ....+..||.++.++++|++.|.+.++.
T Consensus       152 ~--~~~~~~~~~-----i~~~l~~~~~~---~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          152 K--EKALENYRQ-----IKEFIEGTVAE---NAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             H--HHHHHHHHH-----HHHHHTTSTTT---TCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             H--HHHHHHHHH-----HHHHHHhcCcC---CCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            5  443332332     33333211000   0122345778889999999999987764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.63  E-value=2.6e-14  Score=108.06  Aligned_cols=174  Identities=14%  Similarity=0.181  Sum_probs=94.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCC-cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc---HHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS---EFVG   90 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~---~~~~   90 (228)
                      +..++.+|+|+|++|||||||+|+|+|.... ....... .+......  . ..+ .+.++||||+.......   +.+ 
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~-~~~~~~~G~~~~~~~~--~-~~~-~~~l~Dt~G~~~~~~~~~~~~~~-   95 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSL-ARTSKTPGRTQLINLF--E-VAD-GKRLVDLPGYGYAEVPEEMKRKW-   95 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEE--E-EET-TEEEEECCCCC------CCHHHH-
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCcc-ccccCCCccceeeEEE--E-ecC-CEEEEECcCCcccccCHHHHHHH-
Confidence            4556789999999999999999999987621 1111111 11111111  1 112 57789999986432111   111 


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +.....+......++.+++++++....+..+.+..+++.. .+    .|++++.||+|....  .+....+..     ..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~~~-----~~  163 (210)
T 1pui_A           96 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQLNM-----VR  163 (210)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHHHH-----HH
T ss_pred             HHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHHHH-----HH
Confidence            1111112222356789999999986677655444444332 11    268889999998754  322211121     22


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+.......+ ..   .+.++.+..+++++++.|.+.+.+
T Consensus       164 ~~~~~~~~~~-~~---~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          164 EAVLAFNGDV-QV---ETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             HHHGGGCSCE-EE---EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             HHHHhcCCCC-ce---EEEeecCCCCHHHHHHHHHHHHhh
Confidence            3333222111 11   234677788999999999887765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.62  E-value=2.6e-15  Score=111.45  Aligned_cols=169  Identities=15%  Similarity=0.120  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee----eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .+|+|+|++|||||||++.|++......+....+...+.......    ......+.++||||..           ++..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~   71 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------EFYS   71 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH-----------HHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------HHHH
Confidence            589999999999999999999863211111111122222111111    0134568999999932           1111


Q ss_pred             HHhhccCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRF-SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~-s~~~-~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .........+++++|++++++. +... ..|+..+.....+   .|+++|.||+|+...  ..+......       ...
T Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~--~~~~~~~~~-------~~~  139 (184)
T 2zej_A           72 THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASS---SPVILVGTHLDVSDE--KQRKACMSK-------ITK  139 (184)
T ss_dssp             TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTT---CEEEEEEECGGGCCH--HHHHHHHHH-------HHH
T ss_pred             hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCC---CcEEEEEECCCcccc--hhhHHHHHH-------HHH
Confidence            1112223458899999997542 2222 3455545443222   379999999998754  443322111       111


Q ss_pred             HhcCCe-EEEeeCCCcccccch-HHHHHHHHHHHHHHHhc
Q 027090          174 QLCDNR-CVLFDNKTKDEAKGT-EQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       174 ~~~~~~-~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~  211 (228)
                      ..+... +......+..||.++ .++++|++.|.+.+.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             HTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence            222110 000001233566677 48999999988877653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.62  E-value=2.4e-14  Score=108.65  Aligned_cols=164  Identities=19%  Similarity=0.139  Sum_probs=93.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ...+|+|+|.+|+|||||+|.+++... +.....  +.+.+...... ..++.  .+.++||+|...          ...
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~--~~g~d~~~~~i-~~~~~~~~l~~~Dt~g~~~----------~~~  102 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE--VLGEDTYERTL-MVDGESATIILLDMWENKG----------ENE  102 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEE-EETTEEEEEEEECCTTTTH----------HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC--ccceeeEEEEE-EECCeeeEEEEeecCCCcc----------hhh
Confidence            447899999999999999999997532 111111  11111111111 23333  467899998321          111


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ..........+++++|++++++-|..... ++..+..... ....|++||.||+|+...  +.+...  .     ...+.
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~--r~v~~~--e-----~~~~a  172 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRC--REVSVS--E-----GRACA  172 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGG--CCSCHH--H-----HHHHH
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcC--ceEeHH--H-----HHHHH
Confidence            12234456789999999998655554433 3333433211 112489999999998643  322110  0     11122


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...+..      .+..||.++.+++++++.|.+.+..
T Consensus       173 ~~~~~~------~~e~SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          173 VVFDCK------FIETSAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             HHHTCE------EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCE------EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            222211      1345888899999999998877754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.42  E-value=2.8e-17  Score=124.08  Aligned_cols=169  Identities=16%  Similarity=0.052  Sum_probs=96.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee--CCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      .+..+|+|+|.+|+|||||++.+++.....    ....|+..........  ....+.++||||....           .
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~   92 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------D   92 (204)
Confidence            456899999999999999999998765421    1112221111111111  2334679999994332           1


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC--CchHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC--PKPLK  170 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~--~~~~~  170 (228)
                      .........+|++++|+|++++.+....  .++..+......   .|+++|+||+|+...  ......+....  .-...
T Consensus        93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~---~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~  167 (204)
T 3th5_A           93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP  167 (204)
Confidence            2222334567999999999865555543  455555543322   389999999998754  32222211100  00111


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      +..+.+...-  ....+..||.++.+++++++.|.+.
T Consensus       168 ~~~~~~~~~~--~~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          168 QGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            1112221110  0133557888999999999887654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.62  E-value=2.4e-14  Score=117.15  Aligned_cols=174  Identities=14%  Similarity=0.098  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+|+|++|||||||+|+|+|.......  ....|.+..... ....+..+.++||||+..... .. ..+.+...+. 
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~--~~~~T~d~~~~~-i~~~g~~v~l~DT~G~i~~lp-~~-lve~f~~tl~-  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDT--KLFTTMSPKRYA-IPINNRKIMLVDTVGFIRGIP-PQ-IVDAFFVTLS-  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEE-EEETTEEEEEEECCCBCSSCC-GG-GHHHHHHHHH-
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccC--CcccccCCEEEE-EEECCEEEEEEeCCCchhcCC-HH-HHHHHHHHHH-
Confidence            35999999999999999999998652221  112222222222 224567789999999754321 11 1122222222 


Q ss_pred             ccCCccEEEEEEeCCCCC--CHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090          100 AKDGIHAFLVVFSVTNRF--SQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~--s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ....+|.+++++|+++..  +..... +.+++.. ++.. ..|+++|+||+|....  . .......     ...+....
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~-~~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l  323 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVS-GKPILVTLNKIDKING--D-LYKKLDL-----VEKLSKEL  323 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCC-SCCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHH
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcC-CCCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHh
Confidence            345779999999987443  222222 2333333 2211 2389999999998754  2 1111111     11111221


Q ss_pred             -CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       177 -~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                       ....    ..++.|+.++.++++|++.|.+.+.....
T Consensus       324 ~~~~~----~~~~~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          324 YSPIF----DVIPISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             CSCEE----EEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             cCCCC----cEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence             1111    11456788889999999999998887543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.61  E-value=5.5e-16  Score=118.42  Aligned_cols=166  Identities=14%  Similarity=0.047  Sum_probs=97.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ......+|+|+|.+|||||||+|.++..............+....... .......+.++||||.......         
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~---------   80 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNRGPIKFNVWDTAGQEKFGGL---------   80 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEE-ETTEEEEEEEEEECSGGGTSCC---------
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE-ECCEEEEEEEEeCCChHHHhHH---------
Confidence            334557999999999999999999554332111011111122111111 1122346899999994432211         


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                        .......+|++++|+++++..+.... .++..+.....+   .|+++|+||+|+...  ..... ...        +.
T Consensus        81 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~--~~~~~-~~~--------~~  144 (221)
T 3gj0_A           81 --RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN---IPIVLCGNKVDIKDR--KVKAK-SIV--------FH  144 (221)
T ss_dssp             --CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTT---CCEEEEEECTTSSSC--SSCGG-GCC--------HH
T ss_pred             --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCccccc--cccHH-HHH--------HH
Confidence              11123467999999999855444443 355555554322   389999999998754  32111 111        22


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      +.....      .+..|+.++.+++++++.|.+.+....
T Consensus       145 ~~~~~~------~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          145 RKKNLQ------YYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             HHHTCE------EEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             HHcCCE------EEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            222222      234577888999999999988887653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.61  E-value=9.5e-15  Score=117.13  Aligned_cols=127  Identities=17%  Similarity=0.129  Sum_probs=79.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH-HH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC   96 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~   96 (228)
                      ...+|+|+|.+|+|||||+|.+++....... .....|...............+.++||||...       ..+.+. ..
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~   73 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-------FMENYFTKQ   73 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHH-------HHHHHHTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHH-------HhhhhhhhH
Confidence            3579999999999999999999887432111 12234444444433323466799999999321       111111 12


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .......+|++++|+|+++.-+..... +...+..........|+++++||+|+...
T Consensus        74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~  130 (307)
T 3r7w_A           74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL  130 (307)
T ss_dssp             HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence            223346789999999999766666553 33444333211112389999999998763

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.60  E-value=2.3e-17  Score=124.08  Aligned_cols=163  Identities=18%  Similarity=0.146  Sum_probs=91.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ....+|+|+|.+|+|||||+|.|++.......  ....+.+....... ..+  ..+.++||||.......         
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~---------   98 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRTI---------   98 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEE-ETTEEEEEEEECCTTCTTCCCC---------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhHHHH---------
Confidence            34579999999999999999999987642111  11122222222222 233  45899999995443221         


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                        .......+|++++|+|+++..+.... .++..+......  ..|+++|+||+|+...  +.+.       ......+.
T Consensus        99 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~--~~v~-------~~~~~~~~  165 (199)
T 3l0i_B           99 --TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK--KVVD-------YTTAKEFA  165 (199)
T ss_dssp             --SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC----CCCC-------SCC-CHHH
T ss_pred             --HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc--ccCC-------HHHHHHHH
Confidence              12234578999999999865554443 344444433222  2389999999998654  2211       01122222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +...-      ..+..||.++.+++++++.|.+.+.+
T Consensus       166 ~~~~~------~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          166 DSLGI------PFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             HTTTC------CBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             HHcCC------eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            22221      24556888999999999988766544

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.60  E-value=1.8e-14  Score=120.77  Aligned_cols=122  Identities=18%  Similarity=0.205  Sum_probs=78.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------CCCCCcceeeEeEeee
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTV   64 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~   64 (228)
                      .+.+...+|+++|+.++|||||++.|++.......                             ......|.+.......
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            44556689999999999999999999654210000                             0012345554444333


Q ss_pred             eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCcccc
Q 027090           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVF  137 (228)
Q Consensus        65 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s-------~~~~~~l~~~~~~~~~~~~  137 (228)
                       ..+..+.++||||..           ++...+......+|++++++|++.+..       ...+..+.++... +.+  
T Consensus        92 -~~~~~~~iiDTPGh~-----------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v~--  156 (439)
T 3j2k_7           92 -TEKKHFTILDAPGHK-----------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVK--  156 (439)
T ss_pred             -cCCeEEEEEECCChH-----------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CCC--
Confidence             456689999999942           333334444557899999999986543       3445554444432 322  


Q ss_pred             ccEEEEEeCCCCCc
Q 027090          138 DYMIVVFTGGDDLE  151 (228)
Q Consensus       138 ~~~llv~~~~D~~~  151 (228)
                       ++++++||+|...
T Consensus       157 -~iIvviNK~Dl~~  169 (439)
T 3j2k_7          157 -HLIVLINKMDDPT  169 (439)
T ss_pred             -eEEEEeecCCCcc
Confidence             4899999999854

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.58  E-value=5.5e-14  Score=116.57  Aligned_cols=170  Identities=16%  Similarity=0.156  Sum_probs=101.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccc----------c----CCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA----------S----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~----------~----~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   83 (228)
                      +..+|+++|+.++|||||+++|++......          .    ......|......... .....+.++||||.    
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~----   76 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGH----   76 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSH----
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCCh----
Confidence            347999999999999999999987421000          0    0012334443332222 34577999999992    


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~  163 (228)
                             .++...+......+|+++++++++.+........+.++... +-+   ++++++||+|.... .+.+....++
T Consensus        77 -------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~vp---~iivviNK~Dl~~~-~~~~~~~~~~  144 (397)
T 1d2e_A           77 -------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GVE---HVVVYVNKADAVQD-SEMVELVELE  144 (397)
T ss_dssp             -------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred             -------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CCC---eEEEEEECcccCCC-HHHHHHHHHH
Confidence                   23444555566789999999999977777777776655442 222   37889999998753 0222222222


Q ss_pred             cCCchHHHHHHhcCCeEEEeeCCCcccccchH---------H-HHHHHHHHHHHHHh
Q 027090          164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIVQ  210 (228)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~l~~~i~~~~~~  210 (228)
                           ++++.+...-.- -....++.||.++.         + +.+|++.|.+.++.
T Consensus       145 -----~~~~l~~~~~~~-~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          145 -----IRELLTEFGYKG-EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             -----HHHHHHHTTSCT-TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             -----HHHHHHHcCCCc-ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence                 444444332100 00011233554433         3 88999999887765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.58  E-value=7.9e-15  Score=121.58  Aligned_cols=167  Identities=14%  Similarity=0.114  Sum_probs=98.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ...|+|+|+||||||||+++|++.....   .....++........... ...+.++|+||+.+.......+...+.+. 
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i---~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~-  232 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAHPKI---APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH-  232 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSCCEE---CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH-
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCCccc---cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHH-
Confidence            4579999999999999999999885421   222333222222222233 36789999999865321111111122222 


Q ss_pred             hhccCCccEEEEEEeCC----CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           98 GMAKDGIHAFLVVFSVT----NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~----~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                         ...++.++++++++    ..++.+++++..+..++..    +|.++++||+|....  ..+..+.+         ..
T Consensus       233 ---~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~----~P~ILVlNKlDl~~~--~~~~~l~~---------~l  294 (416)
T 1udx_A          233 ---IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLR----RPSLVALNKVDLLEE--EAVKALAD---------AL  294 (416)
T ss_dssp             ---HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHH----SCEEEEEECCTTSCH--HHHHHHHH---------HH
T ss_pred             ---HHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhc----CCEEEEEECCChhhH--HHHHHHHH---------HH
Confidence               24679999999986    1133344444444433322    368899999998754  33322222         22


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      +....      ..+..||.++.++++|++.|.+.+.+...
T Consensus       295 ~~~g~------~vi~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          295 AREGL------AVLPVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             HTTTS------CEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             HhcCC------eEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence            21111      12345667789999999999999987554

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.57  E-value=2.4e-14  Score=115.05  Aligned_cols=126  Identities=12%  Similarity=0.123  Sum_probs=66.8

Q ss_pred             CcEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhccCCccEEEEEEeC-CCCCCHHHH-HHHHHHHHHhCccccccEEEE
Q 027090           68 GQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSV-TNRFSQEEE-TAVHRLPNLFGKNVFDYMIVV  143 (228)
Q Consensus        68 ~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~-~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv  143 (228)
                      ...+.++||||+......  .....+.+..........+|+++++++. ...++..+. ..++.+.   ..  .+|+++|
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~--~~~~i~v  204 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PE--GKRTIGV  204 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SS--CSSEEEE
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CC--CCcEEEE
Confidence            346899999998753210  0111122333333444577999999987 334443332 3333332   11  2389999


Q ss_pred             EeCCCCCccchhh-HHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccc---hHHHHHHHHHHHHHHHhc
Q 027090          144 FTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       144 ~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~i~~~~~~~  211 (228)
                      +||+|....  .. ....++..        ...+...++   .....++.+   ..++.++++.+.+.++..
T Consensus       205 ~NK~Dl~~~--~~~~~~~~~~~--------~~~~~~~~~---~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          205 ITKLDLMDK--GTDAMEVLTGR--------VIPLTLGFI---GVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             EECTTSSCS--SCCCHHHHTTS--------SSCCTTCEE---ECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             EcCcccCCc--chHHHHHHhCC--------CccCCCCeE---EEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            999998765  32 22222210        000111222   233344444   578889999999888874

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.57  E-value=9.1e-15  Score=118.12  Aligned_cols=168  Identities=17%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcE--EEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ...+|+++|.+|+|||||++.+++...    ......|+..........++..  +.++||||.....           .
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~  218 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-----------R  218 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCC----CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-----------T
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCC----CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-----------H
Confidence            347999999999999999999987654    1122233332222222234443  5699999954321           2


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc--CC---ch
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE--CP---KP  168 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~--~~---~~  168 (228)
                      ........+|++++|+|++++.+....  .++..+.....   ..|+++|+||+|+...  ......+...  +.   ..
T Consensus       219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~  293 (332)
T 2wkq_A          219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ  293 (332)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred             HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc--cchhhhccccccccccHHH
Confidence            222345688999999999865555554  35555555433   2389999999998654  3322222211  11   12


Q ss_pred             HHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..++.+.....     ..+..||.++.+++++++.|.+.+..
T Consensus       294 ~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          294 GLAMAKEIGAV-----KYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HHHHHHHTTCS-----EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCc-----EEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            22333332210     12345777889999999998876643

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.57  E-value=2.6e-14  Score=122.14  Aligned_cols=118  Identities=14%  Similarity=0.183  Sum_probs=77.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCccc----------------cc----CCCCCcceeeEeEeeeeeCCcEEEEEeCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFK----------------AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~~iDtp   77 (228)
                      +.++|+|+|++|+|||||+|+|++.....                ..    ......|........ .+.+..+.++|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQF-PYKDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEE-EETTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEE-EeCCEEEEEEECC
Confidence            45799999999999999999996211000                00    000112222222222 2567789999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      |..+..       .+....    ...+|++++|+|+..+.+......+..+...   .  .|+++++||+|....
T Consensus        91 G~~df~-------~~~~~~----l~~aD~allVvDa~~g~~~~t~~~~~~~~~~---~--iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFT-------EDTYRT----LTAVDSALMVIDAAKGVEPRTIKLMEVCRLR---H--TPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCC-------HHHHHG----GGGCSEEEEEEETTTCSCHHHHHHHHHHHTT---T--CCEEEEEECTTSCCS
T ss_pred             CchhHH-------HHHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEeCCCCccc
Confidence            976643       233333    3466999999999988888888777665432   2  279999999998654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.55  E-value=4.5e-14  Score=117.41  Aligned_cols=170  Identities=15%  Similarity=0.166  Sum_probs=100.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC----------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASA----------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   79 (228)
                      ..+..+|+++|+.++|||||+++|++.... .+.                .....|......... .....+.++||||.
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~   85 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAA-ENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGH   85 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHH-SCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCS
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhh-cCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCCh
Confidence            345589999999999999999999873100 000                011233333222222 34567999999995


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhh-HH
Q 027090           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LE  158 (228)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~  158 (228)
                      .+.           ...+......+|+++++++++++.......++..+... +-+   ++++++||+|....  .+ +.
T Consensus        86 ~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~ip---~iivviNK~Dl~~~--~~~~~  148 (405)
T 2c78_A           86 ADY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFMNKVDMVDD--PELLD  148 (405)
T ss_dssp             GGG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCCC--HHHHH
T ss_pred             HHH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEECccccCc--HHHHH
Confidence            531           22222334577999999999877777777777666543 222   38889999998743  33 22


Q ss_pred             HHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHH------------------HHHHHHHHHHHHHh
Q 027090          159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQ------------------VRQLLSLVNSVIVQ  210 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~l~~~i~~~~~~  210 (228)
                      ....+     +.++.+.....- -....+..||.++.+                  +.+|++.+.+.++.
T Consensus       149 ~~~~~-----~~~~l~~~~~~~-~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          149 LVEME-----VRDLLNQYEFPG-DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             HHHHH-----HHHHHHHTTSCT-TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHH-----HHHHHHHhcccc-cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence            22222     344444332100 000123346666655                  78888888887764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.55  E-value=4.3e-14  Score=106.17  Aligned_cols=161  Identities=16%  Similarity=0.156  Sum_probs=91.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|++|||||||++.|+|......  ...+.+.+....... .++.  .+.++||||.......           
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~-----------   70 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRI-----------   70 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCC-----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEECCCchhhhhh-----------
Confidence            36899999999999999999998764211  111222222222222 3343  4678999994332111           


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      ........+++++|+++....+.... .++..+.......  .|+++++||+|+...  +....       .....+...
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~i~~v~nK~Dl~~~--~~~~~-------~~a~~l~~~  139 (199)
T 2f9l_A           71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHL--RAVPT-------DEARAFAEK  139 (199)
T ss_dssp             CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHHHHHH
T ss_pred             hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccc--cCcCH-------HHHHHHHHH
Confidence            11122456899999998854444433 3444443322122  379999999998643  22110       012233333


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..  +.+++    .++.+..+++++++.|.+.+.+
T Consensus       140 ~~--~~~~d----~Sal~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          140 NN--LSFIE----TSALDSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TT--CEEEE----CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cC--CeEEE----EeCCCCCCHHHHHHHHHHHHHH
Confidence            22  22222    4667778899999888776654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.55  E-value=7.6e-14  Score=114.43  Aligned_cols=151  Identities=15%  Similarity=0.194  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|+.++|||||+++|+.          ...|.+....... ..+..+.++||||..+.       .......+   
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~----------~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f-------~~~~~~~~---   81 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK----------KGTSSDITMYNND-KEGRNMVFVDAHSYPKT-------LKSLITAL---   81 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE----------EEEESSSEEEEEC-SSSSEEEEEECTTTTTC-------HHHHHHHH---
T ss_pred             EEEEECCCCCCHHHHHHHHHh----------CCEEEEeeEEEEe-cCCeEEEEEECCChHHH-------HHHHHHHH---
Confidence            899999999999999999981          1233333333322 45667999999996543       12333332   


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe-CCCCCccchhhHHHHhhccCCchHHHHHHhcCC-
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-  178 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  178 (228)
                       ..+|++++++| .........+.+.++... +.+   .+++++| |+|. ..  +.+....++     ++++.+.... 
T Consensus        82 -~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~i~---~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~~  147 (370)
T 2elf_A           82 -NISDIAVLCIP-PQGLDAHTGECIIALDLL-GFK---HGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVLQ  147 (370)
T ss_dssp             -HTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-TCC---EEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTTT
T ss_pred             -HHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-CCC---eEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCCC
Confidence             46799999999 767777777766666543 323   3478888 9998 54  444433333     3333322211 


Q ss_pred             eEEEeeCCCc--ccccc---hHHHHHHHHHHHHHHHh
Q 027090          179 RCVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       179 ~~~~~~~~~~--~~~~~---~~~~~~l~~~i~~~~~~  210 (228)
                      .+.    .++  .||.+   +.++++|++.|.+.++.
T Consensus       148 ~~~----ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          148 DWE----CISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TCE----EEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             ceE----EEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            111    123  57777   89999999999887765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.54  E-value=2.7e-14  Score=106.49  Aligned_cols=130  Identities=10%  Similarity=0.111  Sum_probs=74.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ....+|+|+|++|||||||+|+|++........ ....++..      ......+.++||||.......       +..+
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~-------~~~~  111 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA------DYDGSGVTLVDFPGHVKLRYK-------LSDY  111 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCC-------HHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCceee------eecCCeEEEEECCCCchHHHH-------HHHH
Confidence            455799999999999999999999876422110 11111111      124556889999998665322       1222


Q ss_pred             HhhccCCccEEEEEEeCC-CCCCHHHH-HHHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhh
Q 027090           97 LGMAKDGIHAFLVVFSVT-NRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~-~~~s~~~~-~~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~  162 (228)
                      +......+|++++|+|++ ..-+.... .++..+......  ....|+++|+||+|....  ..+....+
T Consensus       112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~  179 (193)
T 2ged_A          112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKD  179 (193)
T ss_dssp             HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred             HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHH
Confidence            222224569999999987 32222221 223222222110  112389999999999865  55544443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.54  E-value=2e-13  Score=111.75  Aligned_cols=134  Identities=20%  Similarity=0.261  Sum_probs=68.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-----CCcceeeEeEeeee-eCC--cEEEEEeCCCCCCCCCC-----
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAG-----   85 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~--~~~~~iDtpG~~~~~~~-----   85 (228)
                      ..+|+|+|++|+|||||+|+|++...+..+...     ...|.......... ..+  ..+.++||||+++....     
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            368999999999999999999887654332210     01233222222111 122  25899999999654321     


Q ss_pred             --cHHHHHHHHHHHhhc---------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccc
Q 027090           86 --SEFVGKEIVKCLGMA---------KDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH  153 (228)
Q Consensus        86 --~~~~~~~~~~~~~~~---------~~~~~~il~v~~~-~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~  153 (228)
                        ...+...+..++...         ..++|+++++++. ...+...+..+++.+    ...  .|+++|+||+|.... 
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~--~piIlV~NK~Dl~~~-  189 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK--VNIVPVIAKADTLTL-  189 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH-
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC--CCEEEEEECCCCCCH-
Confidence              111111111222211         1356788888876 456666665544433    223  389999999999876 


Q ss_pred             hhhHHHH
Q 027090          154 EKTLEDF  160 (228)
Q Consensus       154 ~~~~~~~  160 (228)
                       +++..+
T Consensus       190 -~ev~~~  195 (361)
T 2qag_A          190 -KERERL  195 (361)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHHH
Confidence             665543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.54  E-value=7.3e-14  Score=111.38  Aligned_cols=173  Identities=13%  Similarity=0.101  Sum_probs=92.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc--C-CCCCc----------------------ceee-------------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--A-GSSGV----------------------TKTC-------------   58 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~--~-~~~~~----------------------t~~~-------------   58 (228)
                      ....+|+|+|.+|+|||||+|+|+|......+  . ...+.                      ++..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            34469999999999999999999998752111  1 10110                      1000             


Q ss_pred             -----------EeEeeeeeCCcEEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhccCCccEEE-EEEeCCCCCCHHHHHH
Q 027090           59 -----------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEETA  124 (228)
Q Consensus        59 -----------~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~s~~~~~~  124 (228)
                                 -...........+.++||||+.....  ..+...+.+...+.......+.++ +++++...++..+.. 
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-
Confidence                       00000001135789999999876432  011111122222333333455554 788987666555432 


Q ss_pred             HHHHHHHhCccccccEEEEEeCCCCCccchhh-HHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHH
Q 027090          125 VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSL  203 (228)
Q Consensus       125 l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  203 (228)
                       .++......  ..|+++|+||+|....  .. ....++..        ...+...+   ...+..||.++.+++++++.
T Consensus       183 -~~~~~~~~~--~~~~i~V~NK~Dl~~~--~~~~~~~~~~~--------~~~~~~~~---~~v~~~SA~~~~gi~~l~~~  246 (299)
T 2aka_B          183 -KIAKEVDPQ--GQRTIGVITKLDLMDE--GTDARDVLENK--------LLPLRRGY---IGVVNRSQKDIDGKKDITAA  246 (299)
T ss_dssp             -HHHHHHCTT--CSSEEEEEECGGGSCT--TCCCHHHHTTC--------SSCCTTCE---EECCCCCCBCTTSCBCHHHH
T ss_pred             -HHHHHhCCC--CCeEEEEEEccccCCC--CchHHHHHhCC--------cCcCCCCc---EEEECCChhhccccccHHHH
Confidence             223222111  2389999999998754  32 22222210        00000111   23456688888899899888


Q ss_pred             HHH
Q 027090          204 VNS  206 (228)
Q Consensus       204 i~~  206 (228)
                      +.+
T Consensus       247 l~~  249 (299)
T 2aka_B          247 LAA  249 (299)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            766

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.54  E-value=6.6e-14  Score=118.87  Aligned_cols=118  Identities=16%  Similarity=0.226  Sum_probs=73.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcc-c----------------------------ccCCCCCcceeeEeEeeeeeCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAF-K----------------------------ASAGSSGVTKTCEMKTTVLKDG   68 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~-~----------------------------~~~~~~~~t~~~~~~~~~~~~~   68 (228)
                      +..+|+++|..|+|||||++.|++.... .                            ........|.+....... ...
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~  110 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THR  110 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCC
Confidence            3479999999999999999999755110 0                            000112334443333332 456


Q ss_pred             cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccccEE
Q 027090           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI  141 (228)
Q Consensus        69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~s~~~~~~l~~~~~~~~~~~~~~~l  141 (228)
                      ..+.++||||..+           +...+......+|++++|+|++.+       +.......+.++.. .+.+   |++
T Consensus       111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~---~iI  175 (483)
T 3p26_A          111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NLI  175 (483)
T ss_dssp             CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCC---CEE
T ss_pred             ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCC---cEE
Confidence            7899999999632           222233334567999999999854       33444444444443 2322   699


Q ss_pred             EEEeCCCCCc
Q 027090          142 VVFTGGDDLE  151 (228)
Q Consensus       142 lv~~~~D~~~  151 (228)
                      +++||+|+..
T Consensus       176 vviNK~Dl~~  185 (483)
T 3p26_A          176 IAMNKMDNVD  185 (483)
T ss_dssp             EEEECGGGGT
T ss_pred             EEEECcCccc
Confidence            9999999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.53  E-value=1.3e-13  Score=104.92  Aligned_cols=122  Identities=11%  Similarity=0.110  Sum_probs=72.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ....+|+|+|++|+|||||++.|++...... ......++..      ......+.++||||.....       ..+..+
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~------~~~~~~~~l~Dt~G~~~~~-------~~~~~~   75 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAA------DYDGSGVTLVDFPGHVKLR-------YKLSDY   75 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEET------TGGGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEE------EeeCceEEEEECCCcHHHH-------HHHHHH
Confidence            4457999999999999999999998764211 1111222111      1234568999999975421       223333


Q ss_pred             HhhccCCccEEEEEEeCC-CCCCHH-HHHHHHHHHHHhC--ccccccEEEEEeCCCCCcc
Q 027090           97 LGMAKDGIHAFLVVFSVT-NRFSQE-EETAVHRLPNLFG--KNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~-~~~s~~-~~~~l~~~~~~~~--~~~~~~~llv~~~~D~~~~  152 (228)
                      +......+|++++|+|++ ..-+.. ..+++..+.....  .+...|+++++||+|+...
T Consensus        76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence            332223469999999997 333322 2233333333211  1112389999999999765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.52  E-value=9.9e-14  Score=113.61  Aligned_cols=128  Identities=20%  Similarity=0.225  Sum_probs=75.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceee-----------------------------------------
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-----------------------------------------   58 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-----------------------------------------   58 (228)
                      ..|+|+|++|||||||+|+|+|......+..  .+|...                                         
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~--~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSS--SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCC--cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            4999999999999999999999765222211  111000                                         


Q ss_pred             -------------EeEeeeeeCCcEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHH
Q 027090           59 -------------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET  123 (228)
Q Consensus        59 -------------~~~~~~~~~~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~  123 (228)
                                   -...........+.++||||+......  .....+.+..........+|+++++++... .......
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~-~~~~~~~  191 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN-QDLATSD  191 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETT-SCGGGCH
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeeccc-CCcCCHH
Confidence                         000001112345899999999876321  112223344444444567899999987652 2222234


Q ss_pred             HHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090          124 AVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus       124 ~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ++.++.......  +|+++|+||+|....
T Consensus       192 ~~~l~~~~~~~~--~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          192 AIKISREVDPSG--DRTFGVLTKIDLMDK  218 (360)
T ss_dssp             HHHHHHHSCTTC--TTEEEEEECGGGCCT
T ss_pred             HHHHHHHhcccC--CCEEEEEeCCccCCC
Confidence            455555443222  379999999998754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.52  E-value=3.4e-14  Score=125.26  Aligned_cols=121  Identities=18%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceee---EeE-----eeee------------------------
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC---EMK-----TTVL------------------------   65 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~---~~~-----~~~~------------------------   65 (228)
                      ...+|+|+|.+|+|||||+|+|+|......+.  .+.|...   .+.     ....                        
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~--~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~  145 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDV--NPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE  145 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCC--CTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCC--CCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence            45799999999999999999999987533322  2222100   000     0000                        


Q ss_pred             ---------------------eCC----cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHH
Q 027090           66 ---------------------KDG----QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE  120 (228)
Q Consensus        66 ---------------------~~~----~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~  120 (228)
                                           ...    ..+.++||||+.+...        .........+.+|++++|++++..++..
T Consensus       146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~  217 (695)
T 2j69_A          146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLG  217 (695)
T ss_dssp             HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHH
T ss_pred             HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchh
Confidence                                 000    3589999999764211        1111222234679999999998788887


Q ss_pred             HHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090          121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus       121 ~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      +...+...   +.. ..+|+++|+||+|....
T Consensus       218 e~~~l~~~---l~~-~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          218 ERRYLENY---IKG-RGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHHHHHH---TTT-SCCCEEEEEECGGGGGG
T ss_pred             HHHHHHHH---HHh-hCCCEEEEEECcccccc
Confidence            77654322   111 11379999999998644

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.52  E-value=1.9e-13  Score=114.60  Aligned_cols=159  Identities=12%  Similarity=0.107  Sum_probs=92.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc--ccc------------cC-----------------CCCCcceeeEeEeeee
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKA------------SA-----------------GSSGVTKTCEMKTTVL   65 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~--~~~------------~~-----------------~~~~~t~~~~~~~~~~   65 (228)
                      ++..+|+++|+.++|||||+++|++...  +..            +.                 .....|.+...... .
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~-~  100 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF-S  100 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE-E
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe-e
Confidence            4457999999999999999999976531  000            00                 00122333222222 2


Q ss_pred             eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe
Q 027090           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (228)
Q Consensus        66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~  145 (228)
                      .....+.++||||..+.       .....    .....+|++++|++++.+......+.+.++... +.+   |+++++|
T Consensus       101 ~~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~~---~iIvviN  165 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAIN  165 (434)
T ss_dssp             CSSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEEE
T ss_pred             cCCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEE
Confidence            34567999999994321       12222    234577999999999977777777777666543 322   6899999


Q ss_pred             CCCCCccchhhHHHHhhccCCchHHHHHHhcC--CeEEEeeCCCcccccchHHHHH
Q 027090          146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQ  199 (228)
Q Consensus       146 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  199 (228)
                      |+|+.....+.+....+.     +.++.+...  ....   ..++.||.++.++.+
T Consensus       166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~---~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTM---AFVPMSALKGDNVVN  213 (434)
T ss_dssp             CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEE---EEEECCTTTCTTTSS
T ss_pred             cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCc---eEEEEeccCCCCccc
Confidence            999875311333333333     444544443  1111   113345556666655

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.50  E-value=4.2e-16  Score=132.81  Aligned_cols=164  Identities=13%  Similarity=0.174  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+|+|+.|+|||||+++|++......  .....|............+..+.++||||..+..           ..+..
T Consensus         5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-----------~~~~~   71 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-----------AMRAR   71 (537)
T ss_dssp             CBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-----------TSBBS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-----------HHHHH
Confidence            5899999999999999999987654222  2234444443333332245578999999965432           22233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+|++++|++++++....+...+..+...   ..  |+++++||+|........+...+.        +....+.. 
T Consensus        72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~v--PiIVViNKiDl~~~~~~~v~~~l~--------~~~~~~e~-  137 (537)
T 3izy_P           72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDA---HV--PIVLAINKCDKAEADPEKVKKELL--------AYDVVCED-  137 (537)
T ss_dssp             SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---TC--CEEECCBSGGGTTTSCCSSSSHHH--------HTTSCCCC-
T ss_pred             HHccCCEEEEEEECCCCccHHHHHHHHHHHHc---CC--cEEEEEecccccccchHHHHHHHH--------hhhhhHHh-
Confidence            45678999999999988888777766665542   22  799999999986431111111111        11101110 


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +-.....++.||.++.++++|++.|..+++.
T Consensus       138 ~~~~~~iv~vSAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          138 YGGDVQAVHVSALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             SSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred             cCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence            0000123567889999999999999887764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.50  E-value=1.1e-13  Score=103.34  Aligned_cols=163  Identities=18%  Similarity=0.169  Sum_probs=89.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ..+|+|+|.+|+|||||+|.+++... +.....  +.+.+...... ..++.  .+.++||+|.....       +.+  
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~l~~~Dt~~~~~~~-------~~~--   73 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE--VLGEDTYERTL-MVDGESATIILLDMWENKGEN-------EWL--   73 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----G--GGCTTEEEEEE-EETTEEEEEEEECCCCC-----------CTT--
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc--ccceeEEEEEE-EECCeEEEEEEEEeccCcchh-------hhH--
Confidence            47899999999999999999986432 111110  11111111111 23343  45789999854310       000  


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                       ........|++++|++++++-|..... ++..+...... ...|+++|.||+|+...  +.+..  ..     ...+..
T Consensus        74 -~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~--r~v~~--~~-----~~~~a~  142 (192)
T 2cjw_A           74 -HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRX--REVSV--SE-----GRAXAV  142 (192)
T ss_dssp             -GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGG--CCSCH--HH-----HHHHHH
T ss_pred             -HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhcc--ccccH--HH-----HHHHHH
Confidence             011123458999999998655555443 44444443221 12389999999998643  22210  00     111222


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..+..+      +..||.++.+++++++.+.+.+..
T Consensus       143 ~~~~~~------~e~SA~~g~~v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          143 VFDXKF------IETSAAVQHNVKELFEGIVRQVRL  172 (192)
T ss_dssp             HTTCEE------EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HhCCce------EEeccccCCCHHHHHHHHHHHHHh
Confidence            222111      345788889999999988877654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.49  E-value=1.3e-12  Score=97.43  Aligned_cols=159  Identities=16%  Similarity=0.162  Sum_probs=90.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|++|||||||++.|++...+.  ....+.+.+....... .++.  .+.++||||.........         
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~~~---------   96 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQ-VDGKTIKAQIWDTAGLERYRAITS---------   96 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEE-ETTEEEEEEEEEECSCCSSSCCCH---------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEE-ECCEEEEEEEEECCCCcchhhhhH---------
Confidence            4689999999999999999999876521  1122223222222222 3443  356799999754332111         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                        ......+.++++++.....+.... .++..+......  ..|+++++||+|+...  .....       .....+...
T Consensus        97 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~--~~~~~-------~~a~~l~~~  163 (191)
T 1oix_A           97 --AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHL--RAVPT-------DEARAFAEK  163 (191)
T ss_dssp             --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred             --HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc--cccCH-------HHHHHHHHH
Confidence              112355889999998744333332 244433332211  2378999999998643  21110       012233333


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ..  +.+++    .++.+..+++++++.|.+.+
T Consensus       164 ~~--~~~ld----~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          164 NG--LSFIE----TSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             TT--CEEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred             cC--CEEEE----EeCCCCCCHHHHHHHHHHHh
Confidence            22  22223    46677789999998886643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.49  E-value=6.8e-14  Score=120.25  Aligned_cols=140  Identities=19%  Similarity=0.276  Sum_probs=80.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee--------------------------------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--------------------------------   64 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--------------------------------   64 (228)
                      ....+|+|+|..|+|||||+|+|+|.............|+........                                
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            345799999999999999999999987521112222222221110000                                


Q ss_pred             ----eeCC---cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccc
Q 027090           65 ----LKDG---QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNV  136 (228)
Q Consensus        65 ----~~~~---~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~  136 (228)
                          ....   ..+.++||||+.+.....-...-.+..........+|++++|+++.. ..+..+..+++.+...   . 
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~-  218 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---E-  218 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---G-
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---C-
Confidence                0000   25789999998763211000000011222222346699999999985 3666666665554321   2 


Q ss_pred             cccEEEEEeCCCCCccchhhHHHHhhc
Q 027090          137 FDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus       137 ~~~~llv~~~~D~~~~~~~~~~~~~~~  163 (228)
                       .|+++|+||+|....  +++...+..
T Consensus       219 -~pvilVlNK~Dl~~~--~el~~~~~~  242 (550)
T 2qpt_A          219 -DKIRVVLNKADMVET--QQLMRVYGA  242 (550)
T ss_dssp             -GGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred             -CCEEEEEECCCccCH--HHHHHHHHH
Confidence             279999999999876  666655544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.49  E-value=1.5e-13  Score=121.02  Aligned_cols=171  Identities=15%  Similarity=0.176  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceee-----------------------------------------
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-----------------------------------------   58 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~-----------------------------------------   58 (228)
                      .+|+|+|..++|||||+|+|+|......+..  .+|...                                         
T Consensus        52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             SEEEEEECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            4899999999999999999999875322211  111100                                         


Q ss_pred             ----------EeEeeeeeCCcEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhc-cCCccEEEEEEeCCCCCCHHHH-HH
Q 027090           59 ----------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMA-KDGIHAFLVVFSVTNRFSQEEE-TA  124 (228)
Q Consensus        59 ----------~~~~~~~~~~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~il~v~~~~~~~s~~~~-~~  124 (228)
                                -...+.......+.++||||+......  .......+...+... ....|++++|+++...+...+. ..
T Consensus       130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                      000011112234789999999874321  111112222222222 2578999999999866666665 33


Q ss_pred             HHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHH
Q 027090          125 VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSL  203 (228)
Q Consensus       125 l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  203 (228)
                      ++.+.   ...  +|+++|+||+|....  ... ...+..          +... ....+...+..||.++.++++|.+.
T Consensus       210 l~~L~---~~g--~pvIlVlNKiDlv~~--~~~~~~il~~----------~~~~-l~lg~~~VV~iSA~~G~GvdeL~ea  271 (772)
T 3zvr_A          210 AKEVD---PQG--QRTIGVITKLDLMDE--GTDARDVLEN----------KLLP-LRRGYIGVVNRSQKDIDGKKDITAA  271 (772)
T ss_dssp             HHHHC---TTC--SSEEEEEECTTSSCT--TCCSHHHHTT----------CSSC-CSSCEEECCCCCCEESSSSEEHHHH
T ss_pred             HHHHH---hcC--CCEEEEEeCcccCCc--chhhHHHHHH----------Hhhh-hhccCCceEEecccccccchhHHHH
Confidence            33332   212  389999999999865  321 111111          0000 0012335667888999999999988


Q ss_pred             HHH---HHHh
Q 027090          204 VNS---VIVQ  210 (228)
Q Consensus       204 i~~---~~~~  210 (228)
                      +.+   .+++
T Consensus       272 I~~e~~ffpe  281 (772)
T 3zvr_A          272 LAAERKFFLS  281 (772)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhccC
Confidence            876   4555

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.3e-13  Score=112.58  Aligned_cols=123  Identities=15%  Similarity=0.237  Sum_probs=79.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ..-+|+|+|.+++|||||+|+|++...   .+.+++.||...........+..+.++||||+.............+...+
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~---~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTES---EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCC---CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCC---cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            345899999999999999999999764   23445556665555556678889999999999876544333334444443


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcc-ccccEEEEEeCCCC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDD  149 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~-~~~~~llv~~~~D~  149 (228)
                      .    .+|++++|+|+.+++  .+.+.+..-+..+... ..+|.++++||.|.
T Consensus       148 ~----~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          148 R----TCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             H----HCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             H----hcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            3    459999999987432  2333333222222211 12478889999985

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.48  E-value=2.6e-13  Score=110.84  Aligned_cols=170  Identities=13%  Similarity=0.116  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc--CCCCCcc-----------------------eee----------------
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVT-----------------------KTC----------------   58 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~--~~~~~~t-----------------------~~~----------------   58 (228)
                      .+|+|+|.+|+|||||+|+|+|......+  ......+                       +..                
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~  111 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  111 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence            58999999999999999999998752111  1111011                       000                


Q ss_pred             --------EeEeeeeeCCcEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhcc-CCccEEEEEEeCCCCCCHHHHHHHHH
Q 027090           59 --------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHR  127 (228)
Q Consensus        59 --------~~~~~~~~~~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~s~~~~~~l~~  127 (228)
                              ............+.++||||+......  .....+.+...+.... ...+++++++++...+...+.  +.+
T Consensus       112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~i  189 (353)
T 2x2e_A          112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKV  189 (353)
T ss_dssp             TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HHH
T ss_pred             CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HHH
Confidence                    000001011356999999998764321  1111122222222222 344667777777644444433  233


Q ss_pred             HHHHhCccccccEEEEEeCCCCCccchhh-HHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          128 LPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       128 ~~~~~~~~~~~~~llv~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      +.......  .|+++|+||+|....  .. ....++. ...       .....   +...+..||.++.+++++++.+.+
T Consensus       190 ~~~~~~~~--~~~i~V~NK~Dl~~~--~~~~~~~~~~-~~~-------~l~~~---~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          190 AKEVDPQG--QRTIGVITKLDLMDE--GTDARDVLEN-KLL-------PLRRG---YIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHCTTC--TTEEEEEECGGGSCT--TCCCHHHHTT-CSS-------CCTTC---EEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHhCcCC--CceEEEeccccccCc--chhHHHHHhC-Ccc-------cccCC---ceEEEeCCcccccccccHHHHHHH
Confidence            43332222  389999999998754  22 2222221 000       00011   123455688888888888887765

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.47  E-value=9.2e-13  Score=109.29  Aligned_cols=171  Identities=17%  Similarity=0.205  Sum_probs=79.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC----CCcceeeEeEeeee---eCCcEEEEEeCCCCCCCCCCcH--
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSE--   87 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~~iDtpG~~~~~~~~~--   87 (228)
                      .-...|+|+|+||||||||+|+|+|...+..+...    ...+..........   .....+.++||||+........  
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            33467999999999999999999998763332110    01122211111111   1123589999999876432111  


Q ss_pred             -HHHH----HHHHHH-------hhcc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           88 -FVGK----EIVKCL-------GMAK--DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        88 -~~~~----~~~~~~-------~~~~--~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                       ....    .+..++       ....  ..+|++++++..+ ..++..+..+++.+.    ..  .++++|+||+|....
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~--v~iIlVinK~Dll~~  182 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EK--VNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TT--SEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----cc--CcEEEEEEcccCccH
Confidence             1101    111111       0111  3456778887775 578887766655443    22  279999999999876


Q ss_pred             chhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                        .++..+.+.     +.+.+....-.+      ...++.+..++++++..+..
T Consensus       183 --~ev~~~k~~-----i~~~~~~~~i~~------~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          183 --EECQQFKKQ-----IMKEIQEHKIKI------YEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             --HHHHHHHHH-----HHHHHHHHTCCC------CCCC----------------
T ss_pred             --HHHHHHHHH-----HHHHHHHcCCeE------EeCCCCCCcCHHHHHHHHHh
Confidence              666655554     444443332221      22234444556555555444

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.46  E-value=2.8e-12  Score=116.53  Aligned_cols=169  Identities=18%  Similarity=0.208  Sum_probs=101.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~   80 (228)
                      ...+..+|+++|+.++|||||+++|++.....              .......+|......... .....+.++||||. 
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGH-  369 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGH-  369 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCH-
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCCh-
Confidence            34456899999999999999999998741100              000112233332222212 34567999999992 


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HH
Q 027090           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-ED  159 (228)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~  159 (228)
                                .++...+......+|++++|++++++.....+..+.++... +-+   ++++++||+|....  .+. ..
T Consensus       370 ----------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gIP---~IIVVINKiDLv~d--~e~le~  433 (1289)
T 3avx_A          370 ----------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GVP---YIIVFLNKCDMVDD--EELLEL  433 (1289)
T ss_dssp             ----------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TCS---CEEEEEECCTTCCC--HHHHHH
T ss_pred             ----------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CCC---eEEEEEeecccccc--hhhHHH
Confidence                      33445555566789999999999877777777777666543 222   37889999999753  332 22


Q ss_pred             HhhccCCchHHHHHHhcCC---eEEEeeCCCcccccch--------HHHHHHHHHHHHHHHh
Q 027090          160 FLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~l~~~i~~~~~~  210 (228)
                      ...+     +.++.+...-   .+    ..++.||.++        .++.+|++.|.+.++.
T Consensus       434 i~eE-----i~elLk~~G~~~~~v----p~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          434 VEME-----VRELLSQYDFPGDDT----PIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             HHHH-----HHHHHHHTTSCTTTC----CEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHH-----HHHHHHhccccccce----eEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence            2222     4444443321   01    1123455554        5688999988876653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.46  E-value=6.6e-13  Score=114.83  Aligned_cols=114  Identities=18%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeee---------------eeCCcEEEEEeCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTV---------------LKDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~---------------~~~~~~~~~iDtpG~~~~   82 (228)
                      .+|+|+|+.++|||||+++|++........  +..|..  .......               ......+.++||||..+.
T Consensus         6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~--ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            6 PIVSVLGHVDHGKTTLLDHIRGSAVASREA--GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCccccC--CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            589999999999999999998765421111  122221  1111100               011225899999997654


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCc
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE  151 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~  151 (228)
                      ...           +......+|++++|+++++++.......+..+...   .  .|+++++||+|...
T Consensus        84 ~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~---~--vPiIVViNKiDl~~  136 (594)
T 1g7s_A           84 TTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIH  136 (594)
T ss_dssp             TTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGST
T ss_pred             HHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc---C--CeEEEEeccccccc
Confidence            321           12334578999999999987777777766665432   2  27999999999863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.45  E-value=1.6e-14  Score=117.35  Aligned_cols=162  Identities=14%  Similarity=0.137  Sum_probs=103.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee------eeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV------LKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .-+++..++|+|+||||||||+++|+|...+.+|    .+..........      ......-.+++.|.+....+..++
T Consensus        50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G----~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~en  125 (366)
T 3tui_C           50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG----SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN  125 (366)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHH
T ss_pred             EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce----EEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHH
Confidence            3456789999999999999999999999875554    222221111000      001223456677776654433332


Q ss_pred             HH--------------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           89 VG--------------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        89 ~~--------------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      +.              +.....+...  +...  +.-.....+|+|++|++.++++++.+|.   ++|   |++.+|...
T Consensus       126 v~~~~~~~~~~~~~~~~~v~~lL~~v--gL~~--~~~~~~~~LSGGqkQRVaIArAL~~~P~---lLLlDEPTs~LD~~~  198 (366)
T 3tui_C          126 VALPLELDNTPKDEVKRRVTELLSLV--GLGD--KHDSYPSNLSGGQKQRVAIARALASNPK---VLLCDQATSALDPAT  198 (366)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHHH--TCGG--GTTCCTTTSCHHHHHHHHHHHHTTTCCS---EEEEESTTTTSCHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHc--CCch--HhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEECCCccCCHHH
Confidence            21              0111111110  0000  0011125799999999999999998884   666   889999887


Q ss_pred             cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.++++.          +|++..+...|++.+++.+|.+..
T Consensus       199 ~--~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~  244 (366)
T 3tui_C          199 T--RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE  244 (366)
T ss_dssp             H--HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             H--HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            7  77777766542          899999999999999999887653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.44  E-value=8.8e-13  Score=114.01  Aligned_cols=164  Identities=18%  Similarity=0.205  Sum_probs=93.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc-cccc------------CCCCCcceeeEeEeeeee--C--CcEEEEEeCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS------------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLF   80 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~--~~~~~~iDtpG~~   80 (228)
                      .-++|+|+|+.++|||||+++|+.... ....            ......|...........  +  ...+.++||||..
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            347899999999999999999975210 0000            001123333222222211  1  2468999999965


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~  160 (228)
                      +.       ..++...+.    .+|++++|+|+.++.+......+..+...   .  .|+++++||+|....  . ....
T Consensus        83 dF-------~~ev~~~l~----~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a--~-~~~v  143 (599)
T 3cb4_D           83 DF-------SYEVSRSLA----ACEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAA--D-PERV  143 (599)
T ss_dssp             GG-------HHHHHHHHH----HCSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTC--C-HHHH
T ss_pred             HH-------HHHHHHHHH----HCCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCcccc--c-HHHH
Confidence            42       234444444    34999999999878887777655544432   2  279999999998754  2 2222


Q ss_pred             hhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .+.     +.+..   ...   ....+..||.++.++++|++.|.+.++..
T Consensus       144 ~~e-----i~~~l---g~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          144 AEE-----IEDIV---GID---ATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             HHH-----HHHHT---CCC---CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             HHH-----HHHHh---CCC---cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence            222     22221   110   01245568888899999999999888764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.44  E-value=5.2e-13  Score=114.80  Aligned_cols=161  Identities=15%  Similarity=0.146  Sum_probs=89.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--------ee---eeCCcEEEEEeCCCCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--------TV---LKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--------~~---~~~~~~~~~iDtpG~~~~~~   84 (228)
                      .....+|+|+|.+|||||||+|.|++....    .....|.......        ..   ......+.++||||......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~----~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~  113 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD----PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA  113 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH
Confidence            345589999999999999999999987642    1112222211111        11   11246799999999544332


Q ss_pred             CcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc
Q 027090           85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (228)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~  164 (228)
                      ...       .+    ....+++++|+|++..  .....++..+.....+   .|+++|+||+|....  ..+..  +  
T Consensus       114 ~~~-------~~----l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~---~pvilV~NK~Dl~~~--~~v~~--~--  171 (535)
T 3dpu_A          114 SHQ-------FF----MTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGK---SPVIVVMNKIDENPS--YNIEQ--K--  171 (535)
T ss_dssp             TCH-------HH----HHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSS---CCEEEEECCTTTCTT--CCCCH--H--
T ss_pred             HHH-------HH----ccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCC---CCEEEEEECCCcccc--cccCH--H--
Confidence            211       11    2246999999999732  3334566666665332   389999999998754  22110  0  


Q ss_pred             CCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                         .+++.......      ..+..||.++.++++|++.|.+.+.+.
T Consensus       172 ---~~~~~~~~~~~------~~~~vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          172 ---KINERFPAIEN------RFHRISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             ---HHHHHCGGGTT------CEEECCC-----CTTHHHHHHHHHTCT
T ss_pred             ---HHHHHHHhcCC------ceEEEecCcccCHHHHHHHHHHHHhcc
Confidence               01111111111      134467788899999999998888764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.44  E-value=1.6e-14  Score=118.00  Aligned_cols=162  Identities=14%  Similarity=0.096  Sum_probs=102.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+......... .......-.+++.+.++...+..+++.    
T Consensus        26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G----~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~  101 (381)
T 3rlf_A           26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG----DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK  101 (381)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred             ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe----EEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence            356679999999999999999999999875554    22222111100 001122345667776665543333221    


Q ss_pred             ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                +.....+...  +...  +.-.....+|+|++|++.+++++..+|.   ++|   |++.+|....  ..+
T Consensus       102 ~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~p~~LSGGqrQRVaiArAL~~~P~---lLLLDEPts~LD~~~~--~~l  172 (381)
T 3rlf_A          102 LAGAKKEVINQRVNQVAEVL--QLAH--LLDRKPKALSGGQRQRVAIGRTLVAEPS---VFLLDEPLSNLDAALR--VQM  172 (381)
T ss_dssp             HTTCCHHHHHHHHHHHHHHT--TCGG--GTTCCGGGSCHHHHHHHHHHHHHHHCCS---EEEEESTTTTSCHHHH--HHH
T ss_pred             HcCCCHHHHHHHHHHHHHHc--CCch--hhcCChhHCCHHHHHHHHHHHHHHcCCC---EEEEECCCcCCCHHHH--HHH
Confidence                      1111111111  1110  0001114799999999999999998884   555   8899998766  666


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ...++++.          +|++.++...|++++++.+|.+...
T Consensus       173 ~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~  215 (381)
T 3rlf_A          173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV  215 (381)
T ss_dssp             HHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            66665442          8999999999999999999986543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.44  E-value=1.2e-12  Score=112.98  Aligned_cols=164  Identities=16%  Similarity=0.232  Sum_probs=96.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc-ccc-c-----------CCCCCcceeeEeEeeeee--C--CcEEEEEeCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA-S-----------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLF   80 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~~iDtpG~~   80 (228)
                      .-++|+|+|+.++|||||++.|+.... ... +           .....+|...........  +  ...+.++||||..
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            447899999999999999999965210 000 0           001122322221111111  1  2468899999965


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHH
Q 027090           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF  160 (228)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~  160 (228)
                      +.       ..++.+.+.    ..|++++|+|+.++.+..+...+..+...   ..  |+++++||+|....  . ....
T Consensus        85 dF-------~~ev~r~l~----~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~i--piIvviNKiDl~~a--~-~~~v  145 (600)
T 2ywe_A           85 DF-------SYEVSRALA----ACEGALLLIDASQGIEAQTVANFWKAVEQ---DL--VIIPVINKIDLPSA--D-VDRV  145 (600)
T ss_dssp             GG-------HHHHHHHHH----TCSEEEEEEETTTBCCHHHHHHHHHHHHT---TC--EEEEEEECTTSTTC--C-HHHH
T ss_pred             hH-------HHHHHHHHH----hCCEEEEEEECCCCccHHHHHHHHHHHHC---CC--CEEEEEeccCcccc--C-HHHH
Confidence            42       234444443    56999999999988888777665554432   22  79999999998754  2 2222


Q ss_pred             hhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .++        +.+.....   ....+..||.++.++++|++.|.+.++..
T Consensus       146 ~~e--------l~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          146 KKQ--------IEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             HHH--------HHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHH--------HHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            222        22221110   01245678888999999999998888764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.44  E-value=1.2e-12  Score=102.94  Aligned_cols=137  Identities=20%  Similarity=0.228  Sum_probs=79.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-----CCcceeeEeEeee---eeCCcEEEEEeCCCCCCCCCCcH---
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGSE---   87 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~---~~~~~~~~~iDtpG~~~~~~~~~---   87 (228)
                      ..+++|+|+||||||||+|+|+|...+.+|...     ...+.........   ..-...++++|+||++.......   
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            368999999999999999999998765554211     0111111111111   11123579999999976443211   


Q ss_pred             HHHH----HHHHHHhh----------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           88 FVGK----EIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        88 ~~~~----~~~~~~~~----------~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ...+    .+......          ...++++.+++++.. .+++..+.+.++.+...      .+++++++|+|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence            1111    11111111          112468888888854 67888887766665432      279999999999987


Q ss_pred             chhhHHHHhhc
Q 027090          153 HEKTLEDFLGH  163 (228)
Q Consensus       153 ~~~~~~~~~~~  163 (228)
                        .++..+.+.
T Consensus       156 --~e~~~~k~~  164 (270)
T 3sop_A          156 --EEKSEFKQR  164 (270)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              777766665

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.44  E-value=1.2e-14  Score=113.77  Aligned_cols=160  Identities=13%  Similarity=0.043  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---e--eeeCCcEEEEEeCCCCCCCCCCcHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---T--VLKDGQVVNVIDTPGLFDLSAGSEFVG   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~--~~~~~~~~~~iDtpG~~~~~~~~~~~~   90 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+........   .  .........+.+.|.+....+..+++.
T Consensus        47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~  122 (263)
T 2olj_A           47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG----EIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT  122 (263)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred             EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc----EEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHH
Confidence            356679999999999999999999998775544    2221111100   0  000011234555565544322222211


Q ss_pred             H---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           91 K---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        91 ~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      -               .+...+...  +...  +.-.....+|+|+++++.++++++.+|.   ++|   |++.+|....
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LSgGqkQRv~lAraL~~~p~---lllLDEPts~LD~~~~  195 (263)
T 2olj_A          123 LAPMKVRKWPREKAEAKAMELLDKV--GLKD--KAHAYPDSLSGGQAQRVAIARALAMEPK---IMLFDEPTSALDPEMV  195 (263)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHT--TCGG--GTTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHC--CCch--HhcCChhhCCHHHHHHHHHHHHHHCCCC---EEEEeCCcccCCHHHH
Confidence            0               011111111  0000  0001114799999999999999998884   665   8899998877


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                        ..+.+.+++..         +|++..+...|+..+++.++.+.
T Consensus       196 --~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~  238 (263)
T 2olj_A          196 --GEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII  238 (263)
T ss_dssp             --HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred             --HHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence              77777765542         89999999999999999888764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.44  E-value=1.8e-14  Score=112.79  Aligned_cols=161  Identities=14%  Similarity=0.062  Sum_probs=98.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-----------e-----eeeCCcEEEEEeCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-----------T-----VLKDGQVVNVIDTPGL   79 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-----------~-----~~~~~~~~~~iDtpG~   79 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|.    +........           .     .........+.+.|.+
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~----i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l  104 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA----IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL  104 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE----EEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE----EEECCEEccccccccccccccChhhHHHHhcceEEEecCccc
Confidence            4567799999999999999999999987755542    221111100           0     0001112345565665


Q ss_pred             CCCCCCcHHHHH---------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--
Q 027090           80 FDLSAGSEFVGK---------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--  142 (228)
Q Consensus        80 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--  142 (228)
                      +...+..+++.-               .+...+...  +....+ .-.....+|+|+++++.++++++.+|.   ++|  
T Consensus       105 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~-~~~~~~~LSgGq~qRv~lAraL~~~p~---lllLD  178 (262)
T 1b0u_A          105 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV--GIDERA-QGKYPVHLSGGQQQRVSIARALAMEPD---VLLFD  178 (262)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT--TCCHHH-HTSCGGGSCHHHHHHHHHHHHHHTCCS---EEEEE
T ss_pred             CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHc--CCCchh-hcCCcccCCHHHHHHHHHHHHHhcCCC---EEEEe
Confidence            543332222210               011111111  110000 011114799999999999999998884   666  


Q ss_pred             -EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          143 -VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       143 -v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       |++.+|....  ..+.+.+.+..         +|++..+...|+..+++.++.+.
T Consensus       179 EPts~LD~~~~--~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~  232 (262)
T 1b0u_A          179 EPTSALDPELV--GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE  232 (262)
T ss_dssp             STTTTSCHHHH--HHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred             CCCccCCHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence             8899998877  77777665432         89999999999999998888764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.44  E-value=2.6e-14  Score=115.96  Aligned_cols=162  Identities=13%  Similarity=0.151  Sum_probs=98.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE-----eeeeeCCcEEEEEeCCCCCCCCCCcHH--
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-----TTVLKDGQVVNVIDTPGLFDLSAGSEF--   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~~~iDtpG~~~~~~~~~~--   88 (228)
                      -+++..++|+|+||||||||+++|.|...+.+|    .+.......     .........-.+++.+.++...+..++  
T Consensus        27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G----~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~  102 (359)
T 3fvq_A           27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG----EISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIA  102 (359)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE----EEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHH
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCc----EEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHH
Confidence            356679999999999999999999999876555    222221111     000011222445565555433222111  


Q ss_pred             ------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           89 ------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        89 ------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                                  ..+.+...+...  +...  +.-.....+|+|++|++.++++++.+|.   ++|   |++.+|.... 
T Consensus       103 ~~l~~~~~~~~~~~~~v~~~l~~~--gL~~--~~~r~~~~LSGGq~QRValArAL~~~P~---lLLLDEPts~LD~~~r-  174 (359)
T 3fvq_A          103 YGLGNGKGRTAQERQRIEAMLELT--GISE--LAGRYPHELSGGQQQRAALARALAPDPE---LILLDEPFSALDEQLR-  174 (359)
T ss_dssp             TTSTTSSCCSHHHHHHHHHHHHHH--TCGG--GTTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSCHHHH-
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHc--CCch--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH-
Confidence                        111122222211  0000  0001114799999999999999998884   655   8899998766 


Q ss_pred             hhhHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          154 EKTLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       154 ~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                       ..+...+.+.    .      +|++.++...|++++++.+|++...
T Consensus       175 -~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~  220 (359)
T 3fvq_A          175 -RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT  220 (359)
T ss_dssp             -HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             -HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence             6665433322    1      8999999999999999999886543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.43  E-value=5.2e-12  Score=100.83  Aligned_cols=173  Identities=16%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC-CcccccCC----CCCcceeeEeEeee---eeCCcEEEEEeCCCCCCCCCCc---
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR-KAFKASAG----SSGVTKTCEMKTTV---LKDGQVVNVIDTPGLFDLSAGS---   86 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~-~~~~~~~~----~~~~t~~~~~~~~~---~~~~~~~~~iDtpG~~~~~~~~---   86 (228)
                      -..+|+|+|++|+|||||+|+|+|. ..+.++..    ....+.........   ......+.++||||++......   
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3478999999999999999999987 43333310    00112111111111   1123468999999985432110   


Q ss_pred             HHHHHHH----HHHHhhc---------cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           87 EFVGKEI----VKCLGMA---------KDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        87 ~~~~~~~----~~~~~~~---------~~~~~~il~v~~~~~-~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ......+    ..++...         ..++++++++.+.+. .+...+.   +++..+. ..  .++++|+||.|....
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~-~~--~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIH-NK--VNIVPVIAKADTLTL  170 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHT-TT--SCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHH-hc--CCEEEEEEeCCCCCH
Confidence            1111111    0122111         124566777777543 4777664   3344332 22  279999999999865


Q ss_pred             chhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                        +++....+.     +.+..+...-      .....+|.++ +++++++.+.+.+.+
T Consensus       171 --~e~~~~~~~-----~~~~~~~~~~------~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          171 --KERERLKKR-----ILDEIEEHNI------KIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             --HHHHHHHHH-----HHHHHHHTTC------CCCCCC----------CHHHHHHHHT
T ss_pred             --HHHHHHHHH-----HHHHHHHcCC------eEEecCCccc-cccHHHHHHHHHhhc
Confidence              555433333     3333333321      2344577777 899988887777654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.42  E-value=4e-14  Score=115.11  Aligned_cols=161  Identities=16%  Similarity=0.161  Sum_probs=101.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe------eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT------TVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~------~~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+........      ..........+.+.+.++...+..+++
T Consensus        28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni  103 (353)
T 1oxx_K           28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTG----ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI  103 (353)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE----EEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHH
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCce----EEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHH
Confidence            356679999999999999999999999876555    2222211111      011112234566666655433222211


Q ss_pred             --------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 --------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 --------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                                    .+.+...+...  +....  .-.....+|+|++|++.++++++.+|.   ++|   |++.+|....
T Consensus       104 ~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~--~~~~~~~LSGGq~QRvalAraL~~~P~---lLLLDEP~s~LD~~~r  176 (353)
T 1oxx_K          104 AFPLTNMKMSKEEIRKRVEEVAKIL--DIHHV--LNHFPRELSGAQQQRVALARALVKDPS---LLLLDEPFSNLDARMR  176 (353)
T ss_dssp             HGGGTTSSCCHHHHHHHHHHHHHHT--TCGGG--TTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSCGGGH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHc--CCchH--hcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEECCcccCCHHHH
Confidence                          11111222211  00000  001114799999999999999998884   655   8899999877


Q ss_pred             chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                        ..+.+.++++.          +|+..++...|++.+++.+|.+..
T Consensus       177 --~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~  221 (353)
T 1oxx_K          177 --DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ  221 (353)
T ss_dssp             --HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             --HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence              77777665542          899999999999999998887643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.42  E-value=2.4e-14  Score=110.42  Aligned_cols=161  Identities=17%  Similarity=0.140  Sum_probs=97.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-------CCcEEEEEeCCCCCCCCCCcHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-------DGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+............       ......+.+.|.+....+..++
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G----~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~en  103 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG----EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN  103 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce----EEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHH
Confidence            356679999999999999999999998875544    22221111000000       0112345566665544322222


Q ss_pred             H-----------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCC
Q 027090           89 V-----------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGD  148 (228)
Q Consensus        89 ~-----------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D  148 (228)
                      +                 .+.....+...  +.... +.-.....+|+|+++++.++++++.+|.   ++|   |++.+|
T Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~-~~~~~~~~LSgGq~QRv~iAral~~~p~---llllDEPts~LD  177 (235)
T 3tif_A          104 VELPLIFKYRGAMSGEERRKRALECLKMA--ELEER-FANHKPNQLSGGQQQRVAIARALANNPP---IILADQPTWALD  177 (235)
T ss_dssp             HHHHHHTCSSSCCCHHHHHHHHHHHHHHT--TCCGG-GTTCCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSC
T ss_pred             HHHHHHhhhccCCCHHHHHHHHHHHHHHC--CCChh-hhhCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCC
Confidence            1                 11111122111  00000 0001124799999999999999998884   666   889999


Q ss_pred             CCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          149 DLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ....  ..+.+.+.++.          +|++. +...|++.+++.+|.+..
T Consensus       178 ~~~~--~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~d~i~~l~~G~i~~  225 (235)
T 3tif_A          178 SKTG--EKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDGEVER  225 (235)
T ss_dssp             HHHH--HHHHHHHHHHHHHHCCEEEEECSCHH-HHTTSSEEEEEETTEEEE
T ss_pred             HHHH--HHHHHHHHHHHHHcCCEEEEEcCCHH-HHHhCCEEEEEECCEEEE
Confidence            8877  77777665432          89987 567899888888887643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.42  E-value=1.8e-14  Score=110.28  Aligned_cols=157  Identities=15%  Similarity=0.013  Sum_probs=94.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee------eC-CcEEEEEeCCCCCCCCCCcHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------KD-GQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------~~-~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      +++..++|+|+||||||||+++|+|...+.+|    .+...........      .. .....+.+.|.+....+..++.
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l  103 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEG----KVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENV  103 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEE----EEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHH
Confidence            45679999999999999999999998775544    2222111110000      00 1234556666665443332222


Q ss_pred             HH--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 GK--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 ~~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      .-              .+...+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGq~qrv~laral~~~p~---lllLDEPt~~LD~~~~  176 (224)
T 2pcj_A          104 IVPMLKMGKPKKEAKERGEYLLSEL--GLGD--KLSRKPYELSGGEQQRVAIARALANEPI---LLFADEPTGNLDSANT  176 (224)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHT--TCTT--CTTCCGGGSCHHHHHHHHHHHHTTTCCS---EEEEESTTTTCCHHHH
T ss_pred             HhHHHHcCCCHHHHHHHHHHHHHHc--CCch--hhhCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCCCCCCHHHH
Confidence            10              011111111  0000  0001114799999999999999998884   666   8899998877


Q ss_pred             chhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCC
Q 027090          153 HEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKT  187 (228)
Q Consensus       153 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  187 (228)
                        ..+.+.+.+..         +|++..+ ..|+..+++.++.+
T Consensus       177 --~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i  217 (224)
T 2pcj_A          177 --KRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKV  217 (224)
T ss_dssp             --HHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEE
T ss_pred             --HHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEE
Confidence              77777665432         7888776 78888888877754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.41  E-value=2.3e-12  Score=106.61  Aligned_cols=139  Identities=17%  Similarity=0.225  Sum_probs=73.4

Q ss_pred             CCCeE--EEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC---cEEEEEeCCCCCCCCCCcH----
Q 027090           17 NGERT--VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSE----   87 (228)
Q Consensus        17 ~~~~~--i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~~~~~----   87 (228)
                      .++..  ++|+|+||+|||||+|+|+|...........................   ..+.++|+||++.......    
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~  117 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP  117 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence            45556  99999999999999999999854111111111111111111111111   2589999999986432111    


Q ss_pred             ---HHHHHHHHHHhhc---------c--CCccE-EEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           88 ---FVGKEIVKCLGMA---------K--DGIHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        88 ---~~~~~~~~~~~~~---------~--~~~~~-il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                         .....+..++...         .  .++|+ ++++.+...+++..+...++.+   .. ..  |+++|+||+|....
T Consensus       118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L---~~-~~--~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKL---DS-KV--NIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHT---CS-CS--EEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHH---hh-CC--CEEEEEcchhccch
Confidence               1112222222211         1  12454 5566677667888885544433   22 22  79999999999877


Q ss_pred             chhhHHHHhhc
Q 027090          153 HEKTLEDFLGH  163 (228)
Q Consensus       153 ~~~~~~~~~~~  163 (228)
                        .++..+.+.
T Consensus       192 --~E~~~l~~~  200 (427)
T 2qag_B          192 --SELTKFKIK  200 (427)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              666665554

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.41  E-value=7.3e-13  Score=103.37  Aligned_cols=90  Identities=19%  Similarity=0.201  Sum_probs=55.1

Q ss_pred             CccEEEEEEeCCCC--CCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          103 GIHAFLVVFSVTNR--FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       103 ~~~~il~v~~~~~~--~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      .+|++++|+|+++.  .|.... .++..+......+ ..|+++|.||+|+...  +.+..         ..++.......
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~-~~piilV~NK~Dl~~~--~~v~~---------~~~~~~~~~~~  229 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKT-KKPIVVVLTKCDEGVE--RYIRD---------AHTFALSKKNL  229 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHT-TCCEEEEEECGGGBCH--HHHHH---------HHHHHHTSSSC
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccC-CCCEEEEEEccccccc--HHHHH---------HHHHHHhcCCC
Confidence            57999999999865  676654 3555554432111 2389999999998654  44421         22233221111


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                           ..+..||.++.+++++++.|.+.+.
T Consensus       230 -----~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          230 -----QVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             -----CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -----eEEEEECCCCCCHHHHHHHHHHHhc
Confidence                 1234577888999999998877654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.41  E-value=9.3e-15  Score=114.62  Aligned_cols=159  Identities=13%  Similarity=-0.009  Sum_probs=96.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF----   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~----   88 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+.........   .........+.+.+.+....+..+.    
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G----~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  109 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG----ECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG  109 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC----EEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGG
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc----EEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhh
Confidence            346679999999999999999999998775444    22221111000   0000112334444443222111111    


Q ss_pred             --------HHHHHHHHHhhc--cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC------ccccccEEE---EEeCCCC
Q 027090           89 --------VGKEIVKCLGMA--KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG------KNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        89 --------~~~~~~~~~~~~--~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~------~~~~~~~ll---v~~~~D~  149 (228)
                              ..+.....+...  ....+      .....+|+|+++++.++++++.      +|.   ++|   |++.+|.
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~---lLllDEPts~LD~  180 (266)
T 4g1u_C          110 RAPYGGSQDRQALQQVMAQTDCLALAQ------RDYRVLSGGEQQRVQLARVLAQLWQPQPTPR---WLFLDEPTSALDL  180 (266)
T ss_dssp             GTTSCSTTHHHHHHHHHHHTTCSTTTT------SBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE---EEEECCCCSSCCH
T ss_pred             hhhcCcHHHHHHHHHHHHHcCChhHhc------CCcccCCHHHHHHHHHHHHHhcccccCCCCC---EEEEeCccccCCH
Confidence                    001111222111  00011      1114699999999999999987      663   555   8899998


Q ss_pred             CccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          150 LEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ...  ..+.+.++++.          +|++..+...|++.+++.+|.+..
T Consensus       181 ~~~--~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~  228 (266)
T 4g1u_C          181 YHQ--QHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA  228 (266)
T ss_dssp             HHH--HHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHH--HHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence            876  77776665432          899999999999999999987654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.40  E-value=6.3e-15  Score=114.89  Aligned_cols=160  Identities=15%  Similarity=0.159  Sum_probs=98.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe--eeeeCCcEEEEEeCCCCCCCCCCcHHHHH--
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVGK--   91 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~iDtpG~~~~~~~~~~~~~--   91 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+........  ..........+.+.|.+....+..+.+.-  
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~  113 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVA  113 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHH
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHH
Confidence            346679999999999999999999998775544    2221111000  00011223455666666543332222100  


Q ss_pred             ------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           92 ------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        92 ------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                                  .+...+...  +...  +.-.....+|+|+++++.++++++.+|.   ++|   |++.+|....  ..
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~--gL~~--~~~~~~~~LSgGq~qRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~  184 (256)
T 1vpl_A          114 GFYASSSSEIEEMVERATEIA--GLGE--KIKDRVSTYSKGMVRKLLIARALMVNPR---LAILDEPTSGLDVLNA--RE  184 (256)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHH--CCGG--GGGSBGGGCCHHHHHHHHHHHHHTTCCS---EEEEESTTTTCCHHHH--HH
T ss_pred             HHcCCChHHHHHHHHHHHHHC--CCch--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCccccCHHHH--HH
Confidence                        011111110  0000  0001114799999999999999998884   655   8899998877  77


Q ss_pred             HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+.+..         +|++..+...|+..+++.++.+.
T Consensus       185 l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~  225 (256)
T 1vpl_A          185 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV  225 (256)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred             HHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE
Confidence            777665542         78999988889999888888764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2.8e-12  Score=111.45  Aligned_cols=120  Identities=16%  Similarity=0.213  Sum_probs=76.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cCC---------------CCCcceeeEeEeeeee
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG---------------SSGVTKTCEMKTTVLK   66 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~--------------~~~---------------~~~~t~~~~~~~~~~~   66 (228)
                      .++..+|+++|++|+|||||+|.|++......              +..               ..++|.+....... .
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-~  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-T  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE-C
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe-c
Confidence            34567999999999999999999987632100              000               02334443333322 4


Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcccccc
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDY  139 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~s~~~~~~l~~~~~~~~~~~~~~  139 (228)
                      ....+.++||||..+           +...+......+|++++|++++.+       ........+.++.. .+.+   +
T Consensus       243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~---~  307 (611)
T 3izq_1          243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---N  307 (611)
T ss_dssp             SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCC---E
T ss_pred             CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCC---e
Confidence            567899999999643           334445556789999999999732       22334444444433 2322   6


Q ss_pred             EEEEEeCCCCCc
Q 027090          140 MIVVFTGGDDLE  151 (228)
Q Consensus       140 ~llv~~~~D~~~  151 (228)
                      +++++||+|...
T Consensus       308 iIVVvNKiDl~~  319 (611)
T 3izq_1          308 LIIAMNKMDNVD  319 (611)
T ss_dssp             EEEEEECTTTTT
T ss_pred             EEEEEecccccc
Confidence            999999999876

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.40  E-value=7.7e-14  Score=114.15  Aligned_cols=160  Identities=14%  Similarity=0.127  Sum_probs=100.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-------eeeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-------TVLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      +++..++|+|+||||||||+++|+|...+.+|    .+........       ........-.+.+.+.++...+..+++
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni  102 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG----QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI  102 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCCCCCcc----EEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHH
Confidence            45679999999999999999999999876555    2222211111       011112234556666665544333322


Q ss_pred             HH--------------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 GK--------------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 ~~--------------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      .-              .+...+...  +...  +.-.....+|+|++|++.++++++.+|.   ++|   |++.+|....
T Consensus       103 ~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~~~~LSGGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r  175 (372)
T 1g29_1          103 AFPLKLRKVPRQEIDQRVREVAELL--GLTE--LLNRKPRELSGGQRQRVALGRAIVRKPQ---VFLMDEPLSNLDAKLR  175 (372)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHH--TCGG--GTTCCGGGSCHHHHHHHHHHHHHHTCCS---EEEEECTTTTSCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHC--CCch--HhcCCcccCCHHHHHHHHHHHHHhcCCC---EEEECCCCccCCHHHH
Confidence            10              011111110  0000  0001114799999999999999998884   665   8899998776


Q ss_pred             chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                        ..+.+.++++.          +|+..++...|++.+++.+|.+..
T Consensus       176 --~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  220 (372)
T 1g29_1          176 --VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ  220 (372)
T ss_dssp             --HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             --HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence              77776665432          799999999999999998887653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.39  E-value=7.2e-14  Score=113.76  Aligned_cols=161  Identities=17%  Similarity=0.107  Sum_probs=100.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGK---   91 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~---   91 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+........ ..........+.+.+.++...+..+++.-   
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~  101 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG----KIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLE  101 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCCCCce----EEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence            356679999999999999999999999875554    2221111110 00011223455666666554333332210   


Q ss_pred             -----------HHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           92 -----------EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        92 -----------~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                 .+...+...  +...  +.-.....+|+|++|++.++++++.+|.   ++|   |++.+|....  ..+
T Consensus       102 ~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~~~~LSGGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r--~~l  172 (362)
T 2it1_A          102 LRKAPREEIDKKVREVAKML--HIDK--LLNRYPWQLSGGQQQRVAIARALVKEPE---VLLLDEPLSNLDALLR--LEV  172 (362)
T ss_dssp             HTTCCHHHHHHHHHHHHHHT--TCTT--CTTCCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESGGGGSCHHHH--HHH
T ss_pred             hcCCCHHHHHHHHHHHHHHc--CCch--HhhCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECccccCCHHHH--HHH
Confidence                       111111111  1100  0001114799999999999999998884   555   8899998877  777


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.++++.          +|+..++...|++.+++.+|.+..
T Consensus       173 ~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  214 (362)
T 2it1_A          173 RAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ  214 (362)
T ss_dssp             HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            76665532          799999999999999998887653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.39  E-value=5.8e-14  Score=113.95  Aligned_cols=161  Identities=18%  Similarity=0.187  Sum_probs=99.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+........ ..........+.+.+.++...+..+++.    
T Consensus        38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~  113 (355)
T 1z47_A           38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKG----DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLR  113 (355)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHH
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc----EEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence            346679999999999999999999999875554    2222111100 0001122334556565554433333221    


Q ss_pred             ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                +.+...+...  +....  .-.....+|+|++|++.++++++.+|.   ++|   |++.+|....  ..+
T Consensus       114 ~~~~~~~~~~~~v~~~l~~~--gL~~~--~~r~~~~LSGGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r--~~l  184 (355)
T 1z47_A          114 EKRVPKDEMDARVRELLRFM--RLESY--ANRFPHELSGGQQQRVALARALAPRPQ---VLLFDEPFAAIDTQIR--REL  184 (355)
T ss_dssp             HTTCCHHHHHHHHHHHHHHT--TCGGG--TTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTCCSSHHHH--HHH
T ss_pred             HcCCCHHHHHHHHHHHHHHc--CChhH--hcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--HHH
Confidence                      0111111111  00000  001114799999999999999998884   555   8899998877  777


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.++++.          +|+..++...|+..+++.++.+..
T Consensus       185 ~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  226 (355)
T 1z47_A          185 RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ  226 (355)
T ss_dssp             HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence            76665432          899999999999999998887653

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.39  E-value=8.2e-15  Score=123.94  Aligned_cols=160  Identities=14%  Similarity=0.182  Sum_probs=95.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+++|+.++|||||+++|.+.......  ....|......... .++..+.++||||..+...           .+.
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~-----------~~~   69 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVE-TENGMITFLDTPGHAAFTS-----------MRA   69 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTT-----------SBC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHH-----------HHH
Confidence            368999999999999999999875432111  12334333333222 3456789999999655432           122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      .....+|++++|++++++........+..+...   .  .|+++++||+|......+.+...+...  ..   +.+....
T Consensus        70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~---~--vPiIVviNKiDl~~~~~~~v~~~l~~~--~~---~~~~~~~  139 (501)
T 1zo1_I           70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA---Q--VPVVVAVNKIDKPEADPDRVKNELSQY--GI---LPEEWGG  139 (501)
T ss_dssp             SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT---T--CCEEEEEECSSSSTTCCCCTTCCCCCC--CC---CTTCCSS
T ss_pred             HHHhhCCEEEEEeecccCccHHHHHHHHHHHhc---C--ceEEEEEEeccccccCHHHHHHHHHHh--hh---hHHHhCC
Confidence            345678999999999866665556555554432   2  279999999998643112222222110  00   0000000


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      .    ...++.||.++.++++|++.|..
T Consensus       140 ~----~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          140 E----SQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             S----CEEEECCTTTCTTCTTHHHHTTT
T ss_pred             C----ccEEEEeeeeccCcchhhhhhhh
Confidence            0    11234678888999999998754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.39  E-value=8e-12  Score=109.77  Aligned_cols=117  Identities=26%  Similarity=0.236  Sum_probs=78.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcc--cccC-------C-------CCCcceeeEeEeeeeeCCcEEEEEeCCCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KASA-------G-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   80 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~--~~~~-------~-------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~   80 (228)
                      .+..+|+|+|++|+|||||+++|++....  ..+.       .       ...++........ ......+.++||||..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCSG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-eeCCEEEEEEeCCCcc
Confidence            45689999999999999999999854321  0110       0       0122322222222 2456678999999965


Q ss_pred             CCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090           81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (228)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~  150 (228)
                      +.       ..+...++.    ..|.+++++|+..+++.....++..+...   .  .|+++++||+|..
T Consensus        86 ~f-------~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~~---~--ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DF-------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL---G--LPRMVVVTKLDKG  139 (665)
T ss_dssp             GG-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECGGGC
T ss_pred             ch-------HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHHc---c--CCEEEEecCCchh
Confidence            42       133444444    45999999999888888888777776543   2  2788999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.38  E-value=1.7e-14  Score=111.61  Aligned_cols=157  Identities=13%  Similarity=0.115  Sum_probs=95.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-e---eeCCcEEEEEeCCCCCCCCCCcH-----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-V---LKDGQVVNVIDTPGLFDLSAGSE-----   87 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~~iDtpG~~~~~~~~~-----   87 (228)
                      +++..++|+|+||||||||+++|+|...+.+|    .+......... .   ........+.+.|.++...+..+     
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~  105 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG----KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG  105 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHh
Confidence            46679999999999999999999998775554    22211111000 0   00111234445454433211111     


Q ss_pred             --------HHHHHHHHHHhhc---cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           88 --------FVGKEIVKCLGMA---KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        88 --------~~~~~~~~~~~~~---~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                              ...+.+...+...   ....+      .....+|+|+++++.++++++.+|.   ++|   |++.+|.... 
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~------~~~~~LSgGq~qrv~lAraL~~~p~---lllLDEPts~LD~~~~-  175 (240)
T 1ji0_A          106 AYNRKDKEGIKRDLEWIFSLFPRLKERLK------QLGGTLSGGEQQMLAIGRALMSRPK---LLMMDEPSLGLAPILV-  175 (240)
T ss_dssp             GTTCCCSSHHHHHHHHHHHHCHHHHTTTT------SBSSSSCHHHHHHHHHHHHHTTCCS---EEEEECTTTTCCHHHH-
T ss_pred             hhcCCCHHHHHHHHHHHHHHcccHhhHhc------CChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCCcccCCHHHH-
Confidence                    1101111111100   00011      1124799999999999999998884   665   8899998877 


Q ss_pred             hhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          154 EKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       154 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                       ..+.+.+++..         +|++..+...|+..+++.++.+.
T Consensus       176 -~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~  218 (240)
T 1ji0_A          176 -SEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV  218 (240)
T ss_dssp             -HHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred             -HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence             77777665532         78999999999999998888764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.38  E-value=1.2e-12  Score=108.10  Aligned_cols=88  Identities=14%  Similarity=0.066  Sum_probs=44.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee---------------------eeC---CcEEEEEeC
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---------------------LKD---GQVVNVIDT   76 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---------------------~~~---~~~~~~iDt   76 (228)
                      +|+|+|.+|+|||||+|+|++...   ...+.+.|+........                     ..+   ...+.++||
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~~---~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVDV---EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC---cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            799999999999999999998763   12222222221111110                     011   235899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 027090           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN  115 (228)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (228)
                      ||+.......    +.+........+.+|++++|+|+..
T Consensus        79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~  113 (397)
T 1wxq_A           79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATG  113 (397)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred             CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEeccc
Confidence            9986532111    1122222234578999999999974

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.38  E-value=1.1e-13  Score=107.76  Aligned_cols=147  Identities=11%  Similarity=0.037  Sum_probs=92.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc----------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS----------   86 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~----------   86 (228)
                      +++..++|+|+||||||||+++|+|...+.+|.    +.          .......+.+.|.+....+..          
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~----I~----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~   94 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK----IE----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTH   94 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEE----EE----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE----EE----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhh
Confidence            456799999999999999999999987654441    11          011112233333332211111          


Q ss_pred             --------HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchh
Q 027090           87 --------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEK  155 (228)
Q Consensus        87 --------~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~  155 (228)
                              ....+.+...+...  +....  .-.....+|+|+++++.++++++.+|.   ++|   |++.+|....  .
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~--~l~~~--~~~~~~~LSgGq~qrv~lAraL~~~p~---lllLDEPts~LD~~~~--~  165 (253)
T 2nq2_C           95 INTFAKPKSHDYQVAMQALDYL--NLTHL--AKREFTSLSGGQRQLILIARAIASECK---LILLDEPTSALDLANQ--D  165 (253)
T ss_dssp             SCTTCCCCHHHHHHHHHHHHHT--TCGGG--TTSBGGGSCHHHHHHHHHHHHHHTTCS---EEEESSSSTTSCHHHH--H
T ss_pred             cccccCCCHHHHHHHHHHHHHc--CChHH--hcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--H
Confidence                    11111122222211  00000  000114799999999999999999884   555   8899998877  7


Q ss_pred             hHHHHhhcc----C------CchHHHHHHhcCCeEEEeeCC
Q 027090          156 TLEDFLGHE----C------PKPLKEILQLCDNRCVLFDNK  186 (228)
Q Consensus       156 ~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~  186 (228)
                      .+.+.+.+.    .      +|++..+...|+..+++.++.
T Consensus       166 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~  206 (253)
T 2nq2_C          166 IVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN  206 (253)
T ss_dssp             HHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence            777666543    1      789999999999998888876

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.38  E-value=3.6e-14  Score=109.65  Aligned_cols=156  Identities=20%  Similarity=0.124  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHH---------
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFV---------   89 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~---------   89 (228)
                      ..++|+|+||||||||+++|+|...+.+|.    +........ ..........+.+.|.+....+..+..         
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~----i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~  100 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGE----VRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER  100 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceE----EEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC
Confidence            589999999999999999999997755541    111111000 000011112334444443321111110         


Q ss_pred             ---HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090           90 ---GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~  163 (228)
                         .+.+...+...  +...  +.-.....+|+|+++++.++++++.+|.   +++   |++.+|....  ..+.+.+.+
T Consensus       101 ~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~---lllLDEPts~LD~~~~--~~~~~~l~~  171 (240)
T 2onk_A          101 VERDRRVREMAEKL--GIAH--LLDRKPARLSGGERQRVALARALVIQPR---LLLLDEPLSAVDLKTK--GVLMEELRF  171 (240)
T ss_dssp             HHHHHHHHHHHHTT--TCTT--TTTCCGGGSCHHHHHHHHHHHHHTTCCS---SBEEESTTSSCCHHHH--HHHHHHHHH
T ss_pred             chHHHHHHHHHHHc--CCHH--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHHHH--HHHHHHHHH
Confidence               11122222211  0000  0001114799999999999999998884   555   8899998877  777776654


Q ss_pred             cC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          164 EC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       164 ~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..          +|++.++...|+..+++.++.+.
T Consensus       172 l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~  206 (240)
T 2onk_A          172 VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV  206 (240)
T ss_dssp             HHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred             HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            31          78999999999999999888764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.38  E-value=1e-11  Score=109.46  Aligned_cols=120  Identities=24%  Similarity=0.306  Sum_probs=77.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC---CCcccccCC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG---RKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL   79 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   79 (228)
                      .....+|+|+|+.|+|||||+|+|++   .........             ....|....... ..+.+..+.++||||.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~-~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATT-AAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEE-EEETTEEEEEECCCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEE-EEECCeeEEEEECcCC
Confidence            34557999999999999999999984   211000000             112222222222 2345678999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .+..       .+...++.    .+|++++++|+..+.+..+...+..+...   .  .|+++++||+|....
T Consensus        86 ~df~-------~~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~--~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFT-------VEVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATTY---G--VPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCC-------HHHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTC
T ss_pred             cchH-------HHHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHHc---C--CCEEEEEECCCcccc
Confidence            7642       33444444    35999999999988888887776665432   2  279999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.38  E-value=6.5e-14  Score=113.90  Aligned_cols=161  Identities=16%  Similarity=0.093  Sum_probs=99.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVG----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~----   90 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+........ ........-.+.+.+.++...+..+++.    
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~  101 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG----EIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLR  101 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc----EEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence            356679999999999999999999999875554    2221111100 0001122334556565554332222110    


Q ss_pred             ----------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           91 ----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        91 ----------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                                +.+...+...  +...  +.-.....+|+|++|++.++++++.+|.   ++|   |++.+|....  ..+
T Consensus       102 ~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~~~~LSgGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r--~~l  172 (359)
T 2yyz_A          102 ARRISKDEVEKRVVEIARKL--LIDN--LLDRKPTQLSGGQQQRVALARALVKQPK---VLLFDEPLSNLDANLR--MIM  172 (359)
T ss_dssp             SSCSHHHHTTHHHHHHHHHT--TCGG--GTTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSCHHHH--HHH
T ss_pred             hcCCCHHHHHHHHHHHHHHc--CCch--HhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH--HHH
Confidence                      1111111111  0000  0001114799999999999999998884   665   8899998776  777


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.++++.          +|+..++...|++.+++.+|.+..
T Consensus       173 ~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~  214 (359)
T 2yyz_A          173 RAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ  214 (359)
T ss_dssp             HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence            76665432          799999999999999998887653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.37  E-value=1.7e-12  Score=108.82  Aligned_cols=119  Identities=19%  Similarity=0.239  Sum_probs=71.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCC-ccc-c------------c---------------CCCCCcceeeEeEeeeeeC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRK-AFK-A------------S---------------AGSSGVTKTCEMKTTVLKD   67 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~-~~~-~------------~---------------~~~~~~t~~~~~~~~~~~~   67 (228)
                      ++..+|+++|+.|+|||||+++|++.. .+. .            +               ......|.+....... ..
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~   82 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TK   82 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cC
Confidence            345799999999999999999998541 000 0            0               0012344444333222 45


Q ss_pred             CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccccE
Q 027090           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM  140 (228)
Q Consensus        68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~s~~~~~~l~~~~~~~~~~~~~~~  140 (228)
                      ...+.++||||..+           +...+......+|++++|+|+.+.       .....++.+.++.. .+.+   ++
T Consensus        83 ~~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~~---~i  147 (435)
T 1jny_A           83 KYFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QL  147 (435)
T ss_dssp             SCEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TC
T ss_pred             CeEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence            67899999999553           223344456788999999999853       22233444433333 2322   68


Q ss_pred             EEEEeCCCCCc
Q 027090          141 IVVFTGGDDLE  151 (228)
Q Consensus       141 llv~~~~D~~~  151 (228)
                      ++++||+|...
T Consensus       148 ivviNK~Dl~~  158 (435)
T 1jny_A          148 IVAVNKMDLTE  158 (435)
T ss_dssp             EEEEECGGGSS
T ss_pred             EEEEEcccCCC
Confidence            99999999876

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.37  E-value=3.9e-12  Score=98.52  Aligned_cols=162  Identities=10%  Similarity=0.006  Sum_probs=95.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCC---------
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDL---------   82 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~---------   82 (228)
                      .-+++..++|+|+||||||||+++|+|...+.+|    .+........   ..........+.+.|.++..         
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~   99 (243)
T 1mv5_A           24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG----EITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYG   99 (243)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS----CEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhh
Confidence            3456789999999999999999999998775554    2222111000   00001111233344433211         


Q ss_pred             --CCCcHHHHHHHHHHHhhc--cC----CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           83 --SAGSEFVGKEIVKCLGMA--KD----GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        83 --~~~~~~~~~~~~~~~~~~--~~----~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                        .........+........  ..    +.+..  +-.....+|+|+++++.++++++.+|.   +++   |++.+|...
T Consensus       100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~--~~~~~~~LSgGq~qrv~lAral~~~p~---lllLDEPts~LD~~~  174 (243)
T 1mv5_A          100 LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE--VGERGVKISGGQRQRLAIARAFLRNPK---ILMLDEATASLDSES  174 (243)
T ss_dssp             TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCE--ESTTSBCCCHHHHHHHHHHHHHHHCCS---EEEEECCSCSSCSSS
T ss_pred             ccCCCCHHHHHHHHHHhChHHHHHhCccchhch--hccCcCcCCHHHHHHHHHHHHHhcCCC---EEEEECCcccCCHHH
Confidence              011111112222222111  00    11111  111224799999999999999998884   555   899999988


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .  ..+.+.+....        +|++..+ ..|+..+++.++.+.
T Consensus       175 ~--~~i~~~l~~~~~~~tvi~vtH~~~~~-~~~d~v~~l~~G~i~  216 (243)
T 1mv5_A          175 E--SMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQIT  216 (243)
T ss_dssp             C--CHHHHHHHHHHTTSEEEEECCSHHHH-HHCSEEEEEETTEEC
T ss_pred             H--HHHHHHHHHhcCCCEEEEEeCChHHH-HhCCEEEEEECCEEE
Confidence            7  78877776542        7888776 469988888888764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.37  E-value=2.3e-14  Score=116.19  Aligned_cols=164  Identities=15%  Similarity=0.102  Sum_probs=100.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+........ ........-.+.+.+.++...+..+++.- ..
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~-~~   97 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSG----RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF-GM   97 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE----EEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH-HH
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc----EEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHH-HH
Confidence            356679999999999999999999999875554    2221111100 00001112355666666554443333211 00


Q ss_pred             HHHhhcc-CCccEEEEEEeC-------CCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090           95 KCLGMAK-DGIHAFLVVFSV-------TNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        95 ~~~~~~~-~~~~~il~v~~~-------~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~  163 (228)
                      ....... ..++.++-.+.+       ...+|+|++|++.++++++.+|.   ++|   |++.+|....  ..+.+.+++
T Consensus        98 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~---lLLLDEP~s~LD~~~~--~~l~~~l~~  172 (348)
T 3d31_A           98 RMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK---ILLLDEPLSALDPRTQ--ENAREMLSV  172 (348)
T ss_dssp             HHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS---EEEEESSSTTSCHHHH--HHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC---EEEEECccccCCHHHH--HHHHHHHHH
Confidence            0000000 000111111111       14799999999999999998884   665   8899998877  777776654


Q ss_pred             cC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          164 EC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       164 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      +.          +|+..++...|++.+++.+|.+..
T Consensus       173 l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~  208 (348)
T 3d31_A          173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ  208 (348)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred             HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            31          799999999999999998887653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.36  E-value=6.2e-14  Score=114.53  Aligned_cols=161  Identities=14%  Similarity=0.095  Sum_probs=95.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCC---------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAG---------   85 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~---------   85 (228)
                      -+++..++|+|+||||||||+++|.|...+.+|.    +........ ........-.+.+.+.++...+.         
T Consensus        34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~----I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~  109 (372)
T 1v43_A           34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR----IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLK  109 (372)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceE----EEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence            3566799999999999999999999998765542    111111000 00001112234444433322111         


Q ss_pred             -----cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           86 -----SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        86 -----~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                           .....+.+...+...  +...  +.-.....+|+|++|++.++++++.+|.   ++|   |++.+|....  ..+
T Consensus       110 ~~~~~~~~~~~~v~~~l~~~--~L~~--~~~r~~~~LSGGq~QRvalArAL~~~P~---lLLLDEP~s~LD~~~r--~~l  180 (372)
T 1v43_A          110 IKKFPKDEIDKRVRWAAELL--QIEE--LLNRYPAQLSGGQRQRVAVARAIVVEPD---VLLMDEPLSNLDAKLR--VAM  180 (372)
T ss_dssp             --CCCHHHHHHHHHHHHHHT--TCGG--GTTSCTTTCCSSCHHHHHHHHHHTTCCS---EEEEESTTTTSCHHHH--HHH
T ss_pred             hcCCCHHHHHHHHHHHHHHc--CChh--HhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCCccCCHHHH--HHH
Confidence                 111111222222211  1100  0011125799999999999999998884   655   8899998776  777


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+.++++.          +|+..++...|++.+++.++.+..
T Consensus       181 ~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~  222 (372)
T 1v43_A          181 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ  222 (372)
T ss_dssp             HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            76665432          799999999999999998887653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.36  E-value=4.3e-12  Score=101.48  Aligned_cols=120  Identities=15%  Similarity=0.089  Sum_probs=70.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+++|..|+|||||++.+.+...+.. ......|........  .....+.+|||||-.....+.      +  .....
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence            589999999999999998886643221 111223332222221  234679999999965542110      0  01123


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhCccccccEEEEEeCCCCCcc
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l~-~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      +++++++++|+|.+++ ......++. ++.........-|++++.||+|+...
T Consensus        70 yr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~  121 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE  121 (331)
T ss_dssp             HTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred             ccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence            4578999999999866 444444332 22221111112378889999999764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.36  E-value=1.1e-11  Score=106.13  Aligned_cols=118  Identities=16%  Similarity=0.221  Sum_probs=73.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCccc--ccC------------------CCCCcceeeEeEeeeeeCCcEEEEEeCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFK--ASA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~iDtp   77 (228)
                      +..+|+|+|+.|+|||||+++|++.....  .+.                  .....|....... ..+.+..+.++|||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~-~~~~~~~i~liDTP   90 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQ-FPYHDCLVNLLDTP   90 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEE-EEETTEEEEEECCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEE-EEECCeEEEEEECC
Confidence            45799999999999999999998532100  000                  0111122211122 22466789999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      |..+..       .+....    ...+|++++|+++..+........+..+..   ..  .|+++++||+|....
T Consensus        91 G~~df~-------~~~~~~----l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~---~~--ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFS-------EDTYRT----LTAVDCCLMVIDAAKGVEDRTRKLMEVTRL---RD--TPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCC-------HHHHHG----GGGCSEEEEEEETTTCSCHHHHHHHHHHTT---TT--CCEEEEEECTTSCCS
T ss_pred             CChhHH-------HHHHHH----HHHCCEEEEEEeCCccchHHHHHHHHHHHH---cC--CCEEEEEcCcCCccc
Confidence            976542       223333    346799999999987777666555544432   12  279999999998754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.35  E-value=1.6e-11  Score=108.21  Aligned_cols=121  Identities=21%  Similarity=0.256  Sum_probs=77.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhC---CCcccccCC-------------CCCcceeeEeEeeeeeCCcEEEEEeCCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILG---RKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPG   78 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG   78 (228)
                      +.....+|+|+|+.|+|||||+++|+.   .........             ....|........ .+.+..+.++||||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~-~~~~~~i~liDTPG   86 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC-FWKDHRINIIDTPG   86 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEE-EETTEEEEEECCCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEE-EECCeEEEEEECcC
Confidence            344568999999999999999999983   210000000             1223333332222 24567899999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ..+.       ..+...++.    .+|++++++|+..+.+......+..+...   .  .|+++++||+|....
T Consensus        87 ~~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~  144 (691)
T 1dar_A           87 HVDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGA  144 (691)
T ss_dssp             STTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTC
T ss_pred             ccch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHHc---C--CCEEEEEECCCcccC
Confidence            7653       134444444    35999999999988888877766655432   2  279999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.35  E-value=1.4e-12  Score=106.54  Aligned_cols=123  Identities=18%  Similarity=0.067  Sum_probs=69.4

Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~  146 (228)
                      .+..+.++||||+...         + ...    ...+|+++++++....-..   +.+.   ..+.   ..|.++|+||
T Consensus       170 ~~~~~iiiDTpGi~~~---------~-~~~----~~~aD~vl~V~d~~~~~~~---~~l~---~~~~---~~p~ivVlNK  226 (355)
T 3p32_A          170 AGFDVILIETVGVGQS---------E-VAV----ANMVDTFVLLTLARTGDQL---QGIK---KGVL---ELADIVVVNK  226 (355)
T ss_dssp             TTCCEEEEEECSCSSH---------H-HHH----HTTCSEEEEEEESSTTCTT---TTCC---TTSG---GGCSEEEEEC
T ss_pred             CCCCEEEEeCCCCCcH---------H-HHH----HHhCCEEEEEECCCCCccH---HHHH---HhHh---hcCCEEEEEC
Confidence            4567899999997641         1 111    2567999999998622111   1111   1111   1278999999


Q ss_pred             CCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEe-eCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChh
Q 027090          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE  219 (228)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  219 (228)
                      +|....  .........     +.+...........+ ...+..||.++.++++|++.|.+.+.......++.+
T Consensus       227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~~~  293 (355)
T 3p32_A          227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDA  293 (355)
T ss_dssp             CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhcCchHHH
Confidence            998754  444433333     333332221100000 123456888899999999999998876333334333

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.34  E-value=3.1e-12  Score=107.80  Aligned_cols=118  Identities=18%  Similarity=0.229  Sum_probs=73.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC-ccc-------------ccCC---------------CCCcceeeEeEeeeeeCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK-AFK-------------ASAG---------------SSGVTKTCEMKTTVLKDG   68 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~-~~~-------------~~~~---------------~~~~t~~~~~~~~~~~~~   68 (228)
                      +..+|+++|+.++|||||+|+|++.. .+.             .+..               ....|.+....... ...
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~~   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSS
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cCC
Confidence            44789999999999999999998641 000             0000               12344443333222 456


Q ss_pred             cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCccccccEE
Q 027090           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI  141 (228)
Q Consensus        69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~-------~~~~~l~~~~~~~~~~~~~~~l  141 (228)
                      ..+.++||||..           ++...+......+|++++++|++++...       .....+.++.. .+-+   +++
T Consensus        85 ~~~~iiDtPGh~-----------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v~---~ii  149 (458)
T 1f60_A           85 YQVTVIDAPGHR-----------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGVR---QLI  149 (458)
T ss_dssp             EEEEEEECCCCT-----------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTCC---EEE
T ss_pred             ceEEEEECCCcH-----------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCCC---eEE
Confidence            679999999943           2333344556788999999999743211       33333333332 2222   588


Q ss_pred             EEEeCCCCCc
Q 027090          142 VVFTGGDDLE  151 (228)
Q Consensus       142 lv~~~~D~~~  151 (228)
                      +++||+|+..
T Consensus       150 vviNK~Dl~~  159 (458)
T 1f60_A          150 VAVNKMDSVK  159 (458)
T ss_dssp             EEEECGGGGT
T ss_pred             EEEEcccccc
Confidence            9999999873

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.34  E-value=3.1e-12  Score=104.16  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=58.2

Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~  146 (228)
                      .+..+.++||||+...    .      ...    ...+|.+++++++..+.   ..+.+..  ..+.    .|.++++||
T Consensus       165 ~~~~~iliDT~Gi~~~----~------~~l----~~~~d~vl~V~d~~~~~---~~~~i~~--~il~----~~~ivVlNK  221 (349)
T 2www_A          165 AGYDIILIETVGVGQS----E------FAV----ADMVDMFVLLLPPAGGD---ELQGIKR--GIIE----MADLVAVTK  221 (349)
T ss_dssp             TTCSEEEEECCCC--C----H------HHH----HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred             CCCCEEEEECCCcchh----h------hhH----HhhCCEEEEEEcCCcch---hHHHhHH--HHHh----cCCEEEEee
Confidence            4557899999997642    1      111    23679999999986321   1121111  1111    268889999


Q ss_pred             CCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEe-eCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +|....  .........     +.............+ ...+..|+.++.++++|++.|.+.++.
T Consensus       222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            998643  322211121     211111111000000 112336788889999999999887754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.33  E-value=1.9e-11  Score=105.01  Aligned_cols=118  Identities=19%  Similarity=0.249  Sum_probs=82.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh---CCCc---------------cc--ccCCCCCcceeeEeEeeeeeCCcEEEEEeCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSIL---GRKA---------------FK--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP   77 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~---g~~~---------------~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp   77 (228)
                      +.++|+|+|+.++|||||..+|+   |...               ..  .....+.+|+....... .+++..+.++|||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF-PYRDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE-EETTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE-EECCEEEEEEeCC
Confidence            45899999999999999999884   1100               00  00112334444444433 3678889999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      |..|..       .+..+.+...    |.+++|+|+..+....+...++.+...   ..  |.++++||+|....
T Consensus       109 GHvDF~-------~Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~~---~l--p~i~fINK~Dr~~a  167 (548)
T 3vqt_A          109 GHQDFS-------EDTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRMR---AT--PVMTFVNKMDREAL  167 (548)
T ss_dssp             CGGGCS-------HHHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHHT---TC--CEEEEEECTTSCCC
T ss_pred             CcHHHH-------HHHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHHh---CC--ceEEEEecccchhc
Confidence            988764       5666666644    999999999989999998888777654   22  78999999998755

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.32  E-value=1.9e-13  Score=106.06  Aligned_cols=155  Identities=14%  Similarity=0.115  Sum_probs=94.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHH-----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF-----   88 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~-----   88 (228)
                      .++..++|+|+||||||||+++|+|...+. |    .+.........   ........++.+.|.++...+..++     
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G----~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~   98 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK-G----SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ   98 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-E----EEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-e----EEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh
Confidence            456799999999999999999999987644 4    22221111000   0000112344454544322111111     


Q ss_pred             -------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccccc-------EEE---EEeCCCCCc
Q 027090           89 -------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-------MIV---VFTGGDDLE  151 (228)
Q Consensus        89 -------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~-------~ll---v~~~~D~~~  151 (228)
                             ...++...+... +..+      .....+|+|+++++.++++++.+|   +       ++|   |++.+|...
T Consensus        99 ~~~~~~~~~~~~l~~~~l~-~~~~------~~~~~LSgGq~qrv~lAraL~~~p---~~~~~~~~lllLDEPts~LD~~~  168 (249)
T 2qi9_C           99 HDKTRTELLNDVAGALALD-DKLG------RSTNQLSGGEWQRVRLAAVVLQIT---PQANPAGQLLLLDEPMNSLDVAQ  168 (249)
T ss_dssp             SSTTCHHHHHHHHHHTTCG-GGTT------SBGGGCCHHHHHHHHHHHHHHHHC---TTTCTTCCEEEESSTTTTCCHHH
T ss_pred             ccCCcHHHHHHHHHHcCCh-hHhc------CChhhCCHHHHHHHHHHHHHHcCC---CcCCCCCeEEEEECCcccCCHHH
Confidence                   111222221111 0011      111479999999999999998877   4       555   889999887


Q ss_pred             cchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          152 DHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       152 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .  ..+.+.+++..         +|++..+...|+..+++.++.+.
T Consensus       169 ~--~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  212 (249)
T 2qi9_C          169 Q--SALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML  212 (249)
T ss_dssp             H--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred             H--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            7  77777665542         89999998999999988888754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.32  E-value=2.1e-14  Score=112.94  Aligned_cols=160  Identities=17%  Similarity=0.125  Sum_probs=95.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-----eeCCcEEEEEeCCC--CCCCCCCcHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----LKDGQVVNVIDTPG--LFDLSAGSEF   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~iDtpG--~~~~~~~~~~   88 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+..........     ........+.+.|.  +. ..+..++
T Consensus        31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G----~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~  105 (275)
T 3gfo_A           31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG----RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQD  105 (275)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHH
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe----EEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHH
Confidence            356789999999999999999999998775544    222211111000     00111234555552  22 1111111


Q ss_pred             H--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           89 V--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        89 ~--------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      +              .+.....+...  +...  +.-.....+|+|+++++.++++++.+|.   ++|   |++.+|...
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~--~~~~~~~~LSgGqkQRv~iAraL~~~P~---lLlLDEPts~LD~~~  178 (275)
T 3gfo_A          106 VSFGAVNMKLPEDEIRKRVDNALKRT--GIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPK---VLILDEPTAGLDPMG  178 (275)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHT--TCGG--GTTSBGGGSCHHHHHHHHHHHHHTTCCS---EEEEECTTTTCCHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHc--CCch--hhcCCcccCCHHHHHHHHHHHHHHcCCC---EEEEECccccCCHHH
Confidence            1              01111111111  0000  0001114799999999999999998884   555   889999887


Q ss_pred             cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.++++.          +|++..+...|++.+++.+|.+..
T Consensus       179 ~--~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~  224 (275)
T 3gfo_A          179 V--SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL  224 (275)
T ss_dssp             H--HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred             H--HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence            6  66666654421          788888888899999998887653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.31  E-value=2.1e-13  Score=108.68  Aligned_cols=162  Identities=16%  Similarity=0.193  Sum_probs=97.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCC---------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLS---------   83 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~---------   83 (228)
                      -+++.+++|+|+||||||||+++|+|...+.+|    .+.........   .......-.+.+.|.++...         
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G----~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~  152 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSG----CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGR  152 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE----EEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCc----EEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhc
Confidence            356789999999999999999999998765544    22221110000   00011123444555444211         


Q ss_pred             --CCcHHHHHHHHHHHh------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           84 --AGSEFVGKEIVKCLG------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        84 --~~~~~~~~~~~~~~~------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                        ...+.. .+......      ....+.+..+  -.....+|+|+++++.++++++.+|   +++|   |++.+|....
T Consensus       153 ~~~~~~~~-~~~~~~~~l~~~i~~lp~gl~t~~--~~~g~~LSGGqrQRvaiARAL~~~p---~iLlLDEPts~LD~~~~  226 (306)
T 3nh6_A          153 VTAGNDEV-EAAAQAAGIHDAIMAFPEGYRTQV--GERGLKLSGGEKQRVAIARTILKAP---GIILLDEATSALDTSNE  226 (306)
T ss_dssp             TTCCHHHH-HHHHHHHTCHHHHHHSTTGGGCEE--STTSBCCCHHHHHHHHHHHHHHHCC---SEEEEECCSSCCCHHHH
T ss_pred             ccCCHHHH-HHHHHHhCcHHHHHhccchhhhHh--cCCcCCCCHHHHHHHHHHHHHHhCC---CEEEEECCcccCCHHHH
Confidence              111111 11111111      0111223222  2223579999999999999999888   4666   8899998776


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                        ..+.+.+....        +|.+..+.. |+.++++.+|.+...
T Consensus       227 --~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~  269 (306)
T 3nh6_A          227 --RAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVER  269 (306)
T ss_dssp             --HHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEE
T ss_pred             --HHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEE
Confidence              77776665532        788888765 999999988876543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.31  E-value=8.9e-12  Score=101.21  Aligned_cols=111  Identities=10%  Similarity=0.089  Sum_probs=63.0

Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeC
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG  146 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~  146 (228)
                      .+..+.++||||+.+..       ..   .    ...+|.+++++++...-   ..+.+..  ...  .  .|.++|+||
T Consensus       147 ~~~~i~liDTpG~~~~~-------~~---~----~~~aD~vl~Vvd~~~~~---~~~~l~~--~~~--~--~p~ivv~NK  203 (341)
T 2p67_A          147 AGYDVVIVETVGVGQSE-------TE---V----ARMVDCFISLQIAGGGD---DLQGIKK--GLM--E--VADLIVINK  203 (341)
T ss_dssp             TTCSEEEEEEECCTTHH-------HH---H----HTTCSEEEEEECC---------CCCCH--HHH--H--HCSEEEECC
T ss_pred             cCCCEEEEeCCCccchH-------HH---H----HHhCCEEEEEEeCCccH---HHHHHHH--hhh--c--ccCEEEEEC
Confidence            45679999999987520       11   1    25779999999986221   1111110  001  1  268899999


Q ss_pred             CCCCccchhhHHHHhhccCCchHHHHHHhcCC---eEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      +|....  ..+...+..     +++.......   .+.  ...++.||.++.++++|++.|.+.+.
T Consensus       204 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~--~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          204 DDGDNH--TNVAIARHM-----YESALHILRRKYDEWQ--PRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBC--CEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             CCCCCh--HHHHHHHHH-----HHHHHHhccccccCCC--CcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            998754  444433333     3333333221   000  12245678888999999999988765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.30  E-value=4.7e-13  Score=105.23  Aligned_cols=161  Identities=18%  Similarity=0.114  Sum_probs=94.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHHH-
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFVG-   90 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~~-   90 (228)
                      .-+++..++|+|+||||||||+++|+|...+.+|    .+.........   .........+.+.|.++.. +..+++. 
T Consensus        41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~  115 (271)
T 2ixe_A           41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAY  115 (271)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEEGGGBCHHHHHHHEEEECSSCCCCSS-BHHHHHHT
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC----EEEECCEEcccCCHHHHhccEEEEecCCccccc-cHHHHHhh
Confidence            3456789999999999999999999998775544    22211110000   0001112344555554431 1111110 


Q ss_pred             --------HHHH---------HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           91 --------KEIV---------KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        91 --------~~~~---------~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                              .++.         ..+.....+.+..  .-.....+|+|+++++.++++++.+|.   ++|   |++.+|..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~--~~~~~~~LSgGq~QRv~lAraL~~~p~---lllLDEPts~LD~~  190 (271)
T 2ixe_A          116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE--VGETGNQLSGGQRQAVALARALIRKPR---LLILDNATSALDAG  190 (271)
T ss_dssp             TCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB--CCGGGTTSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTCCHH
T ss_pred             hcccCChHHHHHHHHHHHhHHHHHHhhhcchhhh--hcCCcCCCCHHHHHHHHHHHHHhcCCC---EEEEECCccCCCHH
Confidence                    0000         0010000011111  111125799999999999999998884   555   88999988


Q ss_pred             ccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          151 EDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      ..  ..+.+.+....          +|++..+. .|+..+++.++.+.
T Consensus       191 ~~--~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~  235 (271)
T 2ixe_A          191 NQ--LRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVC  235 (271)
T ss_dssp             HH--HHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEE
T ss_pred             HH--HHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence            77  78887776542          68888765 58888888887654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.29  E-value=6.5e-11  Score=104.54  Aligned_cols=120  Identities=21%  Similarity=0.271  Sum_probs=76.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc-c-ccc-CC-------------CCCcceeeEeEeeeeeCC-------cEEE
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA-F-KAS-AG-------------SSGVTKTCEMKTTVLKDG-------QVVN   72 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~-~-~~~-~~-------------~~~~t~~~~~~~~~~~~~-------~~~~   72 (228)
                      ....++|+|+|+.|+|||||++.|+.... . ..+ ..             ...+|......... +.+       ..+.
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRIN   85 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEE
Confidence            34557999999999999999999964210 0 000 00             12234333322222 333       6799


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        73 ~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      +|||||..+..       .+...++.    .+|++++++|+..+.+......+..+...   .  .|+++++||+|....
T Consensus        86 liDTPG~~df~-------~~~~~~l~----~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVDFT-------IEVERSMR----VLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccchH-------HHHHHHHH----HCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCcccc
Confidence            99999966421       33333333    55999999999977777666655554332   2  278999999998754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.29  E-value=2e-14  Score=112.27  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=56.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++++++.+|.   ++|   |++.+|....  ..+.+.+++..         +|++..+...|+..+++
T Consensus       152 ~~LSgGqkQrv~iAraL~~~p~---lllLDEPts~LD~~~~--~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  226 (257)
T 1g6h_A          152 GELSGGQMKLVEIGRALMTNPK---MIVMDEPIAGVAPGLA--HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM  226 (257)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHHcCCC---EEEEeCCccCCCHHHH--HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            4799999999999999998884   666   8899998877  77777766542         78888888899999888


Q ss_pred             eeCCCc
Q 027090          183 FDNKTK  188 (228)
Q Consensus       183 ~~~~~~  188 (228)
                      .++.+.
T Consensus       227 ~~G~i~  232 (257)
T 1g6h_A          227 FNGQII  232 (257)
T ss_dssp             ETTEEE
T ss_pred             ECCEEE
Confidence            888764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.28  E-value=7.3e-14  Score=121.02  Aligned_cols=169  Identities=17%  Similarity=0.178  Sum_probs=82.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccc--------------c---------------CCCCCcceeeEeEeeeee
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLK   66 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~   66 (228)
                      .++..+|+|+|+.++|||||+|.|++......              +               ....++|.+....... .
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-~  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-S  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE-e
Confidence            34557899999999999999999964311000              0               0011233333332222 3


Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhCcccccc
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDY  139 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-----~--s~~~~~~l~~~~~~~~~~~~~~  139 (228)
                      .+..+.++||||..+..           ..+......+|++|+|++++.+     +  .......+.++..+ +.+   +
T Consensus       253 ~~~~i~iiDTPGh~~f~-----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gip---~  317 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFI-----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GIS---E  317 (592)
T ss_dssp             ------CCEEESSSEEE-----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SCC---C
T ss_pred             CCeEEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCC---e
Confidence            45678999999965431           1112233467999999999743     3  44555555555432 333   5


Q ss_pred             EEEEEeCCCCCccchhhHHHHhhccCCchHHHHH-HhcCC---eEEEeeCCCcccccchHHHH--------------HHH
Q 027090          140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDN---RCVLFDNKTKDEAKGTEQVR--------------QLL  201 (228)
Q Consensus       140 ~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~--------------~l~  201 (228)
                      +++++||+|+.......+....+.     +.++. .....   .+    ..++.||.++.++.              +|+
T Consensus       318 iIvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~----~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Ll  388 (592)
T 3mca_A          318 IVVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNV----HFVPISAISGTNLIQKDSSDLYKWYKGPTLL  388 (592)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGE----EEEEECSSSCSSSCSCCCCGGGGTCCSCCHH
T ss_pred             EEEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccce----EEEEEecccCcccccccccccccccchHHHH
Confidence            889999999875211344443343     44443 22221   11    11334566666665              688


Q ss_pred             HHHHHHHH
Q 027090          202 SLVNSVIV  209 (228)
Q Consensus       202 ~~i~~~~~  209 (228)
                      +.|..+++
T Consensus       389 e~l~~~~p  396 (592)
T 3mca_A          389 SALDQLVP  396 (592)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHhhcc
Confidence            88776654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.28  E-value=9.4e-14  Score=109.00  Aligned_cols=160  Identities=18%  Similarity=0.136  Sum_probs=93.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCC-CCCCCCCCcHHH-----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTP-GLFDLSAGSEFV-----   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~-----   89 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|.    +..................+.+.| ......+..+++     
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~----I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~  105 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD----VLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK  105 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE----EEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence            4566799999999999999999999987755542    211111000000111122333433 111111111110     


Q ss_pred             --------HHHHHHHHhhccCCcc--EEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           90 --------GKEIVKCLGMAKDGIH--AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        90 --------~~~~~~~~~~~~~~~~--~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                              .+.+...+...  +.+  ..  .-.....+|+|+++++.++++++.+|.   ++|   |++.+|....  ..
T Consensus       106 ~~~~~~~~~~~~~~~l~~~--gl~~~~~--~~~~~~~LSgGq~qRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~  176 (266)
T 2yz2_A          106 NFYPDRDPVPLVKKAMEFV--GLDFDSF--KDRVPFFLSGGEKRRVAIASVIVHEPD---ILILDEPLVGLDREGK--TD  176 (266)
T ss_dssp             TTCTTSCSHHHHHHHHHHT--TCCHHHH--TTCCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTCCHHHH--HH
T ss_pred             hcCCHHHHHHHHHHHHHHc--CcCCccc--ccCChhhCCHHHHHHHHHHHHHHcCCC---EEEEcCccccCCHHHH--HH
Confidence                    01111111111  000  00  001114799999999999999998884   665   8899998877  77


Q ss_pred             HHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          157 LEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       157 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+.+..         +|++..+...|+..+++.++.+.
T Consensus       177 l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~  217 (266)
T 2yz2_A          177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV  217 (266)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            777665532         78888888889998888887654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.28  E-value=3.9e-11  Score=99.27  Aligned_cols=167  Identities=16%  Similarity=0.097  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCC--cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ..++|+|+||||||||+|+|+|...+..|.....  .++...... .......+.++|+||+......    ..++...+
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~-q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~  144 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-KHPNIPNVVFWDLPGIGSTNFP----PDTYLEKM  144 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE-ECSSCTTEEEEECCCGGGSSCC----HHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEec-cccccCCeeehHhhcccchHHH----HHHHHHHc
Confidence            4899999999999999999999876555522111  111111111 1111235789999998643211    13333333


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC------------ccchhhHHHHhhccC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL------------EDHEKTLEDFLGHEC  165 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~------------~~~~~~~~~~~~~~~  165 (228)
                      ...  ..+..+. ++.+ +   ++++.+.++.++....  +|+++|.|+.|..            ..  .++.+.++.  
T Consensus       145 ~L~--~~~~~~~-lS~G-~---~~kqrv~la~aL~~~~--~p~~lV~tkpdlllLDEPtsgLD~~~~--~~l~~~l~~--  211 (413)
T 1tq4_A          145 KFY--EYDFFII-ISAT-R---FKKNDIDIAKAISMMK--KEFYFVRTKVDSDITNEADGEPQTFDK--EKVLQDIRL--  211 (413)
T ss_dssp             TGG--GCSEEEE-EESS-C---CCHHHHHHHHHHHHTT--CEEEEEECCHHHHHHHHHTTCCTTCCH--HHHHHHHHH--
T ss_pred             CCC--ccCCeEE-eCCC-C---ccHHHHHHHHHHHhcC--CCeEEEEecCcccccCcccccCCHHHH--HHHHHHHHH--
Confidence            322  2344443 5543 2   3667777777776533  3788888877654            23  344444443  


Q ss_pred             CchHH-H-HHHh--cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          166 PKPLK-E-ILQL--CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       166 ~~~~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                         +. + +.+.  ....++++..+..    ...++++|.+.|.+.+++.
T Consensus       212 ---l~~~~l~~~g~~~~~iiliSsh~l----~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          212 ---NCVNTFRENGIAEPPIFLLSNKNV----CHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             ---HHHHHHHHTTCSSCCEEECCTTCT----TSTTHHHHHHHHHHHSCGG
T ss_pred             ---HHHHHHHhcCCCCCcEEEEecCcC----CccCHHHHHHHHHHhCccc
Confidence               11 0 0111  1223444444332    2257899999998888774

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.27  E-value=2.4e-11  Score=98.49  Aligned_cols=163  Identities=13%  Similarity=0.076  Sum_probs=84.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc------CCCCCc----------------ceeeEeEee----------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGV----------------TKTCEMKTT----------   63 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~------~~~~~~----------------t~~~~~~~~----------   63 (228)
                      ..++..++|+|+||||||||+|+|+|...+..+      ......                .........          
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G  131 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  131 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence            356789999999999999999999853221111      000000                000000000          


Q ss_pred             -----------eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHH-HHHHHH
Q 027090           64 -----------VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNL  131 (228)
Q Consensus        64 -----------~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l-~~~~~~  131 (228)
                                 ....+..+.++||||+....       ..+       ...+|.+++++++...   .+.+.+ ..+.. 
T Consensus       132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-------~~v-------~~~~d~vl~v~d~~~~---~~~~~i~~~i~~-  193 (337)
T 2qm8_A          132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE-------TAV-------ADLTDFFLVLMLPGAG---DELQGIKKGIFE-  193 (337)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH-------HHH-------HTTSSEEEEEECSCC---------CCTTHHH-
T ss_pred             hHHHHHHHHHHHhcCCCCEEEEECCCCCcch-------hhH-------HhhCCEEEEEEcCCCc---ccHHHHHHHHhc-
Confidence                       01245678999999987531       111       1467999999987521   111111 00111 


Q ss_pred             hCccccccEEEEEeCCCCCccchhhH-HHHhhccCCchHHHHHHhcCCeEE-EeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          132 FGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQLCDNRCV-LFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       132 ~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                            .+.++++||+|....  ... ....+.     +............ .....+..|+.++.++++|.+.|.+...
T Consensus       194 ------~~~ivvlNK~Dl~~~--~~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          194 ------LADMIAVNKADDGDG--ERRASAAASE-----YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             ------HCSEEEEECCSTTCC--HHHHHHHHHH-----HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ------cccEEEEEchhccCc--hhHHHHHHHH-----HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                  146777899997543  222 122222     2222222220000 0011123577788899999999988776

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.27  E-value=4.8e-12  Score=97.09  Aligned_cols=151  Identities=12%  Similarity=0.110  Sum_probs=90.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHH-------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV-------   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~-------   89 (228)
                      +++..++|+|+||||||||+++|+|...+.+|    .+..          ++....+.+.|.++.. +..+++       
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~i~~----------~g~i~~v~q~~~~~~~-tv~enl~~~~~~~   96 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----KIKH----------SGRISFCSQFSWIMPG-TIKENIIFGVSYD   96 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEE----------CSCEEEECSSCCCCSB-CHHHHHHTTSCCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc----EEEE----------CCEEEEEecCCcccCC-CHHHHhhccCCcC
Confidence            46679999999999999999999998764444    2221          1122334444544332 111111       


Q ss_pred             ---HHHHHHHHhhc--cCC-ccEEE-EEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           90 ---GKEIVKCLGMA--KDG-IHAFL-VVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        90 ---~~~~~~~~~~~--~~~-~~~il-~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                         ..+........  ... .+..- .+-+....+|+|+++++.++++++.+|.   +++   |++.+|....  ..+.+
T Consensus        97 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lllLDEPts~LD~~~~--~~i~~  171 (229)
T 2pze_A           97 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD---LYLLDSPFGYLDVLTE--KEIFE  171 (229)
T ss_dssp             HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS---EEEEESTTTTSCHHHH--HHHHH
T ss_pred             hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC---EEEEECcccCCCHHHH--HHHHH
Confidence               01111111000  000 00000 0001124899999999999999998884   555   8899998877  77777


Q ss_pred             H-hhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          160 F-LGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       160 ~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      . +....        +|++..+. .|+..+++.++.+.
T Consensus       172 ~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~  208 (229)
T 2pze_A          172 SCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY  208 (229)
T ss_dssp             HCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE
T ss_pred             HHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE
Confidence            5 33322        78887764 58888888887654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.26  E-value=2.1e-13  Score=106.67  Aligned_cols=154  Identities=12%  Similarity=0.108  Sum_probs=95.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEE-EEEeCCCCCCCCCCcHHHH-------
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVV-NVIDTPGLFDLSAGSEFVG-------   90 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~iDtpG~~~~~~~~~~~~-------   90 (228)
                      +.+++|+|+||||||||+++|+|.. +.+|.    +................. .+.+.|.+  ..+..+++.       
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~----I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~  102 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGN----IFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG  102 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS-CCEEE----EEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC-CCCcE----EEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc
Confidence            6799999999999999999999987 76652    111110000000111122 34455555  222222210       


Q ss_pred             ---HHHHHHHhhccCCcc-EEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090           91 ---KEIVKCLGMAKDGIH-AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        91 ---~~~~~~~~~~~~~~~-~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~  163 (228)
                         +.+...+...  +.+ ..  .-.....+|+|+++++.++++++.+|.   +++   |++.+|....  ..+.+.+.+
T Consensus       103 ~~~~~~~~~l~~~--gl~~~~--~~~~~~~LSgGqkqRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~l~~~L~~  173 (263)
T 2pjz_A          103 LDRDLFLEMLKAL--KLGEEI--LRRKLYKLSAGQSVLVRTSLALASQPE---IVGLDEPFENVDAARR--HVISRYIKE  173 (263)
T ss_dssp             CCHHHHHHHHHHT--TCCGGG--GGSBGGGSCHHHHHHHHHHHHHHTCCS---EEEEECTTTTCCHHHH--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHc--CCChhH--hcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEECCccccCHHHH--HHHHHHHHH
Confidence               0011111111  110 00  001114799999999999999998884   555   8899999877  888888877


Q ss_pred             cC------CchHHHHHHhcC-CeEEEeeCCCc
Q 027090          164 EC------PKPLKEILQLCD-NRCVLFDNKTK  188 (228)
Q Consensus       164 ~~------~~~~~~~~~~~~-~~~~~~~~~~~  188 (228)
                      ..      +|++..+...|+ ..+++.++.+.
T Consensus       174 ~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~  205 (263)
T 2pjz_A          174 YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ  205 (263)
T ss_dssp             SCSEEEEEESCGGGGGGCTTSEEEEEETTEEE
T ss_pred             hcCcEEEEEcCHHHHHHhcCceEEEEECCEEE
Confidence            64      788888888899 88888777654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.24  E-value=5.9e-13  Score=103.29  Aligned_cols=160  Identities=15%  Similarity=0.086  Sum_probs=93.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcH-----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSE-----   87 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~-----   87 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+.........   .........+.+.|.++.. +..+     
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G----~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~  106 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG----QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLA  106 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEETTTSCHHHHHHHEEEECSSCCCTTS-BHHHHHTTT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc----EEEECCEEhhhCCHHHHHhcEEEEeCCCccccc-cHHHHHhcc
Confidence            346679999999999999999999999775544    22211110000   0000112344455554321 1111     


Q ss_pred             ------HHHHHHHHHHhhc---cC---CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           88 ------FVGKEIVKCLGMA---KD---GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        88 ------~~~~~~~~~~~~~---~~---~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                            ....+........   ..   +.+..  +-.....+|+|+++++.++++++.+|.   +++   |++.+|....
T Consensus       107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~--~~~~~~~LSgGq~qRv~iAraL~~~p~---lllLDEPts~LD~~~~  181 (247)
T 2ff7_A          107 NPGMSVEKVIYAAKLAGAHDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPK---ILIFDEATSALDYESE  181 (247)
T ss_dssp             CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCB--CSTTTTCCCHHHHHHHHHHHHHTTCCS---EEEECCCCSCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHhChHHHHHhCcchhhhh--hhCCCCCCCHHHHHHHHHHHHHhcCCC---EEEEeCCcccCCHHHH
Confidence                  1001111111100   00   11110  111124799999999999999998884   666   9999998877


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                        ..+.+.+.+..        +|.+..+. .|+..+++.++.+.
T Consensus       182 --~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~  222 (247)
T 2ff7_A          182 --HVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV  222 (247)
T ss_dssp             --HHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE
T ss_pred             --HHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence              77777776542        78877664 58888888887654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.24  E-value=3e-11  Score=102.04  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=64.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc-cc-------------cc---------------CCCCCcceeeEeEeeeeeC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA-FK-------------AS---------------AGSSGVTKTCEMKTTVLKD   67 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~-~~-------------~~---------------~~~~~~t~~~~~~~~~~~~   67 (228)
                      ++..+|+++|+.++|||||++.|+.... +.             .|               ......|+........ .+
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TE  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cC
Confidence            4457899999999999999999964210 00             00               0012334443332222 35


Q ss_pred             CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCccccccE
Q 027090           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFDYM  140 (228)
Q Consensus        68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s-------~~~~~~l~~~~~~~~~~~~~~~  140 (228)
                      +..+.++||||..+           +...+......+|++++|+|++++..       ...+..+.++.. .+-+   ++
T Consensus       120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~vp---~i  184 (467)
T 1r5b_A          120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGIN---HL  184 (467)
T ss_dssp             SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCS---SE
T ss_pred             CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCCC---EE
Confidence            67799999999543           22333344567899999999985421       223343433332 2222   48


Q ss_pred             EEEEeCCCCCc
Q 027090          141 IVVFTGGDDLE  151 (228)
Q Consensus       141 llv~~~~D~~~  151 (228)
                      ++++||+|...
T Consensus       185 ivviNK~Dl~~  195 (467)
T 1r5b_A          185 VVVINKMDEPS  195 (467)
T ss_dssp             EEEEECTTSTT
T ss_pred             EEEEECccCCC
Confidence            99999999854

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.23  E-value=3.5e-12  Score=96.72  Aligned_cols=131  Identities=13%  Similarity=0.049  Sum_probs=78.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG------   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~------   90 (228)
                      +++..++|+|+||||||||+++|+|...+.+|    .+........ . .......+.+.|.++...+..+++.      
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~~~-~-~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~  106 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG----EIIYNGVPIT-K-VKGKIFFLPEEIIVPRKISVEDYLKAVASLY  106 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEEGG-G-GGGGEEEECSSCCCCTTSBHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe----EEEECCEEhh-h-hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc
Confidence            45679999999999999999999998765544    2221111100 0 1122334556666544322222210      


Q ss_pred             ------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090           91 ------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        91 ------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~  161 (228)
                            +.+...+...  +.+.  + -.....+|+|+++++.++++++.+|   ++++   |++.+|....  ..+.+.+
T Consensus       107 ~~~~~~~~~~~~l~~~--gl~~--~-~~~~~~LSgGqkqrv~laraL~~~p---~lllLDEPts~LD~~~~--~~l~~~l  176 (214)
T 1sgw_A          107 GVKVNKNEIMDALESV--EVLD--L-KKKLGELSQGTIRRVQLASTLLVNA---EIYVLDDPVVAIDEDSK--HKVLKSI  176 (214)
T ss_dssp             TCCCCHHHHHHHHHHT--TCCC--T-TSBGGGSCHHHHHHHHHHHHTTSCC---SEEEEESTTTTSCTTTH--HHHHHHH
T ss_pred             CCchHHHHHHHHHHHc--CCCc--C-CCChhhCCHHHHHHHHHHHHHHhCC---CEEEEECCCcCCCHHHH--HHHHHHH
Confidence                  0111111111  1110  0 1112479999999999999999888   4666   8899999877  7887777


Q ss_pred             hc
Q 027090          162 GH  163 (228)
Q Consensus       162 ~~  163 (228)
                      .+
T Consensus       177 ~~  178 (214)
T 1sgw_A          177 LE  178 (214)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.23  E-value=3e-12  Score=100.08  Aligned_cols=159  Identities=14%  Similarity=0.093  Sum_probs=92.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV---   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~---   89 (228)
                      -+++..++|+|+||||||||+++|+|...+ +|    .+.........   .........+.+.|.++.. +..+++   
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G----~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~  116 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EG----DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILYG  116 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EE----EEEETTEEGGGBCHHHHHTTEEEECSSCCCCSE-EHHHHHHTT
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCCC-Ce----EEEECCEEhhhcCHHHHhccEEEEcCCCccccc-CHHHHHhcc
Confidence            456789999999999999999999998642 33    22211110000   0001122345555554421 111100   


Q ss_pred             -----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 -----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 -----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                           .+++...+...         ....+..  +-.....+|+|+++++.++++++.+|   +++|   |++.+|....
T Consensus       117 ~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~--~~~~~~~LSgGqkqRv~lAraL~~~p---~lllLDEPts~LD~~~~  191 (260)
T 2ghi_A          117 KLDATDEEVIKATKSAQLYDFIEALPKKWDTI--VGNKGMKLSGGERQRIAIARCLLKDP---KIVIFDEATSSLDSKTE  191 (260)
T ss_dssp             CTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCE--ESSSSBCCCHHHHHHHHHHHHHHHCC---SEEEEECCCCTTCHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCHHHHHhcccccccc--ccCCcCcCCHHHHHHHHHHHHHHcCC---CEEEEECccccCCHHHH
Confidence                 01111111100         0011111  11122479999999999999999888   4666   9999998877


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                        ..+.+.+....        +|++..+ ..|+..+++.++.+.
T Consensus       192 --~~i~~~l~~l~~~~tviivtH~~~~~-~~~d~i~~l~~G~i~  232 (260)
T 2ghi_A          192 --YLFQKAVEDLRKNRTLIIIAHRLSTI-SSAESIILLNKGKIV  232 (260)
T ss_dssp             --HHHHHHHHHHTTTSEEEEECSSGGGS-TTCSEEEEEETTEEE
T ss_pred             --HHHHHHHHHhcCCCEEEEEcCCHHHH-HhCCEEEEEECCEEE
Confidence              77777776543        7887765 458888888887654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.22  E-value=2.2e-13  Score=105.94  Aligned_cols=69  Identities=19%  Similarity=0.068  Sum_probs=50.8

Q ss_pred             CC-CCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHh-cCCeE
Q 027090          115 NR-FSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQL-CDNRC  180 (228)
Q Consensus       115 ~~-~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~  180 (228)
                      .. +|+|+++++.++++++.+|.   ++|   |++.+|....  ..+.+.+++..         +|++..+... |+..+
T Consensus       141 ~~~LSgGqkQrv~iAraL~~~p~---lllLDEPts~LD~~~~--~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~  215 (250)
T 2d2e_A          141 NEGFSGGEKKRNEILQLLVLEPT---YAVLDETDSGLDIDAL--KVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVH  215 (250)
T ss_dssp             TCC----HHHHHHHHHHHHHCCS---EEEEECGGGTTCHHHH--HHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEE
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCC---EEEEeCCCcCCCHHHH--HHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEE
Confidence            35 99999999999999998884   665   8899998877  77777776542         7888877766 47778


Q ss_pred             EEeeCCCc
Q 027090          181 VLFDNKTK  188 (228)
Q Consensus       181 ~~~~~~~~  188 (228)
                      ++.++.+.
T Consensus       216 ~l~~G~i~  223 (250)
T 2d2e_A          216 VMMDGRVV  223 (250)
T ss_dssp             EEETTEEE
T ss_pred             EEECCEEE
Confidence            88777654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.22  E-value=5.6e-11  Score=103.11  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=97.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHH----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEF----   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~----   88 (228)
                      -+++..++|+|+||||||||++.|+|...+.+|    .+..+......   .........+.+.|.++.. +..++    
T Consensus       366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~  440 (582)
T 3b5x_A          366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG----SICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYA  440 (582)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC----EEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhcc
Confidence            356789999999999999999999998775544    22222211100   0011112234444443321 10000    


Q ss_pred             -----HHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           89 -----VGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        89 -----~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                           ..+++...+...         ..+.+..  +-+....+|+|++|++.++++++.+|   ++++   |++.+|...
T Consensus       441 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~--~~~~~~~LSgGq~qr~~iAral~~~p---~illlDEpts~LD~~~  515 (582)
T 3b5x_A          441 AEGEYTREQIEQAARQAHAMEFIENMPQGLDTV--IGENGTSLSGGQRQRVAIARALLRDA---PVLILDEATSALDTES  515 (582)
T ss_pred             CCCCCCHHHHHHHHHHCCCHHHHHhCcccccch--hcCCCCcCCHHHHHHHHHHHHHHcCC---CEEEEECccccCCHHH
Confidence                 011222222111         0112211  11223579999999999999999888   4666   999999887


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .  ..+.+.+++..        +|.+..+. .|++++++.+|++..
T Consensus       516 ~--~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~  558 (582)
T 3b5x_A          516 E--RAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE  558 (582)
T ss_pred             H--HHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE
Confidence            7  77777776542        78887764 799999998887653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.22  E-value=6e-13  Score=104.43  Aligned_cols=68  Identities=16%  Similarity=0.029  Sum_probs=55.2

Q ss_pred             CCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHh-cCCeEEE
Q 027090          116 RFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQL-CDNRCVL  182 (228)
Q Consensus       116 ~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~  182 (228)
                      .+|+|+++++.++++++.+|.   ++|   |++.+|....  ..+.+.++++.         +|++..+... |+..+++
T Consensus       164 ~LSgGq~QRv~iAraL~~~p~---lLlLDEPts~LD~~~~--~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l  238 (267)
T 2zu0_C          164 GFSGGEKKRNDILQMAVLEPE---LCILDESDSGLDIDAL--KVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL  238 (267)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCS---EEEEESTTTTCCHHHH--HHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCC---EEEEeCCCCCCCHHHH--HHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence            499999999999999998884   555   8899998877  88888887653         7888777665 7888888


Q ss_pred             eeCCCc
Q 027090          183 FDNKTK  188 (228)
Q Consensus       183 ~~~~~~  188 (228)
                      .++.+.
T Consensus       239 ~~G~i~  244 (267)
T 2zu0_C          239 YQGRIV  244 (267)
T ss_dssp             ETTEEE
T ss_pred             ECCEEE
Confidence            777654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.20  E-value=2.3e-11  Score=96.41  Aligned_cols=152  Identities=12%  Similarity=0.121  Sum_probs=89.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH-----
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG-----   90 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~-----   90 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|.    +..          ++...++.+.|.++.. +..+.+.     
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~----I~~----------~g~i~~v~Q~~~l~~~-tv~enl~~~~~~  125 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK----IKH----------SGRISFCSQNSWIMPG-TIKENIIGVSYD  125 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEE----EEC----------CSCEEEECSSCCCCSS-BHHHHHHTTCCC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE----EEE----------CCEEEEEeCCCccCcc-cHHHHhhCcccc
Confidence            3467899999999999999999999987655441    111          1122234444444331 1111110     


Q ss_pred             ----HHHHHHHhhc---cCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           91 ----KEIVKCLGMA---KDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        91 ----~~~~~~~~~~---~~~~~~i-l~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                          .+........   ....+.. -.+-+....+|+|+++++.++++++.+|.   +++   |++.+|....  ..+.+
T Consensus       126 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~i~~  200 (290)
T 2bbs_A          126 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD---LYLLDSPFGYLDVLTE--KEIFE  200 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS---EEEEESTTTTCCHHHH--HHHHH
T ss_pred             hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC---EEEEECCcccCCHHHH--HHHHH
Confidence                1111110000   0000000 00001114799999999999999998884   555   8899998877  77777


Q ss_pred             Hh-hccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          160 FL-GHEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       160 ~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      .+ ....        +|++..+ ..|+..+++.++.+.
T Consensus       201 ~ll~~~~~~~tviivtHd~~~~-~~~d~i~~l~~G~i~  237 (290)
T 2bbs_A          201 SCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSY  237 (290)
T ss_dssp             HCCCCCTTTSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred             HHHHHhhCCCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence            53 3321        7888776 469988888888764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.19  E-value=4.3e-12  Score=97.88  Aligned_cols=150  Identities=13%  Similarity=0.108  Sum_probs=89.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC----------CCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL----------SAG   85 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~----------~~~   85 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|.    +...          +....+.+.|.+...          ...
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~----I~~~----------g~i~~v~Q~~~~~~~tv~enl~~~~~~~   93 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH----VAIK----------GSVAYVPQQAWIQNDSLRENILFGCQLE   93 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEE----EEEC----------SCEEEECSSCCCCSEEHHHHHHTTSCCC
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce----EEEC----------CEEEEEcCCCcCCCcCHHHHhhCccccC
Confidence            3567799999999999999999999987655441    1111          111222232322110          000


Q ss_pred             cHHHHHHHHHHHhhc--c---C-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           86 SEFVGKEIVKCLGMA--K---D-GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        86 ~~~~~~~~~~~~~~~--~---~-~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                      .+. .++........  .   + +.+.  .+-+....+|+|+++++.++++++.+|.   ++|   |++.+|....  ..
T Consensus        94 ~~~-~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~LSgGqkqRv~lAraL~~~p~---lllLDEPts~LD~~~~--~~  165 (237)
T 2cbz_A           94 EPY-YRSVIQACALLPDLEILPSGDRT--EIGEKGVNLSGGQKQRVSLARAVYSNAD---IYLFDDPLSAVDAHVG--KH  165 (237)
T ss_dssp             TTH-HHHHHHHTTCHHHHTTSTTGGGS--EESTTSBCCCHHHHHHHHHHHHHHHCCS---EEEEESTTTTSCHHHH--HH
T ss_pred             HHH-HHHHHHHHhhHHHHHhccccccc--cccCCCCCCCHHHHHHHHHHHHHhcCCC---EEEEeCcccccCHHHH--HH
Confidence            111 11222211100  0   0 0000  1112225899999999999999998883   555   8899998877  77


Q ss_pred             HHHHhh---ccC--------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          157 LEDFLG---HEC--------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       157 ~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      +.+.+.   ...        +|++..+ ..|+..+++.++.+.
T Consensus       166 i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i~  207 (237)
T 2cbz_A          166 IFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKIS  207 (237)
T ss_dssp             HHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEEE
T ss_pred             HHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEEE
Confidence            877773   211        6777765 568888888887654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.18  E-value=1.1e-10  Score=105.05  Aligned_cols=117  Identities=21%  Similarity=0.291  Sum_probs=74.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCccccc-------C-------CCCCcceeeEeEeeeee---------------CC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------A-------GSSGVTKTCEMKTTVLK---------------DG   68 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-------~-------~~~~~t~~~~~~~~~~~---------------~~   68 (228)
                      ..++|+|+|+.|+|||||+++|++.......       .       ....+|+..........               .+
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            4478999999999999999999864210000       0       01122322221111111               14


Q ss_pred             cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCC
Q 027090           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (228)
Q Consensus        69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D  148 (228)
                      ..+.++||||..+..       .+...++.    .+|++++|+|+.++.+..+...+..+...   .  .|+++++||+|
T Consensus        98 ~~i~liDTPG~~df~-------~~~~~~l~----~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~D  161 (842)
T 1n0u_A           98 FLINLIDSPGHVDFS-------SEVTAALR----VTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVD  161 (842)
T ss_dssp             EEEEEECCCCCCSSC-------HHHHHHHH----TCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHH
T ss_pred             ceEEEEECcCchhhH-------HHHHHHHH----hCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECCC
Confidence            568999999987643       33444443    56999999999988888877655544321   2  27899999999


Q ss_pred             CC
Q 027090          149 DL  150 (228)
Q Consensus       149 ~~  150 (228)
                      ..
T Consensus       162 ~~  163 (842)
T 1n0u_A          162 RA  163 (842)
T ss_dssp             HH
T ss_pred             cc
Confidence            76

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.16  E-value=6e-12  Score=109.18  Aligned_cols=159  Identities=21%  Similarity=0.164  Sum_probs=97.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCC----------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDL----------   82 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~----------   82 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+..+.....   ..........+.+.|.++..          
T Consensus       366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G----~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~  441 (587)
T 3qf4_A          366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG----RVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR  441 (587)
T ss_dssp             ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE----EEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc----EEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccC
Confidence            356789999999999999999999998775544    2221110000   00001112334444444321          


Q ss_pred             -CCCcHHHHHHHHHHHh---------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCC
Q 027090           83 -SAGSEFVGKEIVKCLG---------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDD  149 (228)
Q Consensus        83 -~~~~~~~~~~~~~~~~---------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~  149 (228)
                       ....+    ++.....         ....+.+..  +-+....+|+|++|++.++++++.+|   ++++   |++.+|.
T Consensus       442 ~~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~--~~~~~~~LSgGqrQrv~lARal~~~p---~illlDEpts~LD~  512 (587)
T 3qf4_A          442 EDATDD----EIVEAAKIAQIHDFIISLPEGYDSR--VERGGRNFSGGQKQRLSIARALVKKP---KVLILDDCTSSVDP  512 (587)
T ss_dssp             SSCCHH----HHHHHHHHTTCHHHHHTSSSGGGCE--ECSSSCSSCHHHHHHHHHHHHHHTCC---SEEEEESCCTTSCH
T ss_pred             CCCCHH----HHHHHHHHhCcHHHHHhcccchhhH--hcCCCCCcCHHHHHHHHHHHHHHcCC---CEEEEECCcccCCH
Confidence             11111    1212111         111133322  22333589999999999999999988   4666   8899998


Q ss_pred             CccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          150 LEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ...  ..+.+.+++..        +|.+..+ ..|++++++.+|++...
T Consensus       513 ~~~--~~i~~~l~~~~~~~tvi~itH~l~~~-~~~d~i~vl~~G~i~~~  558 (587)
T 3qf4_A          513 ITE--KRILDGLKRYTKGCTTFIITQKIPTA-LLADKILVLHEGKVAGF  558 (587)
T ss_dssp             HHH--HHHHHHHHHHSTTCEEEEEESCHHHH-TTSSEEEEEETTEEEEE
T ss_pred             HHH--HHHHHHHHHhCCCCEEEEEecChHHH-HhCCEEEEEECCEEEEE
Confidence            876  77777666543        7888776 58999999988876543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.15  E-value=4.5e-13  Score=105.72  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=53.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc-----------CCchHHHHHHhcCCeE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE-----------CPKPLKEILQLCDNRC  180 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  180 (228)
                      ..+|+|+++++.++++++.+|.   ++|   |++.+|....  ..+.+.+.++           -+|++..+...|+..+
T Consensus       160 ~~LSgGqkqRv~lAraL~~~p~---lLlLDEPts~LD~~~~--~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~  234 (279)
T 2ihy_A          160 GYLSTGEKQRVMIARALMGQPQ---VLILDEPAAGLDFIAR--ESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL  234 (279)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEE
T ss_pred             hhCCHHHHHHHHHHHHHhCCCC---EEEEeCCccccCHHHH--HHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEE
Confidence            4799999999999999998884   665   8899998876  7766665442           1466777777888888


Q ss_pred             EEeeCCCc
Q 027090          181 VLFDNKTK  188 (228)
Q Consensus       181 ~~~~~~~~  188 (228)
                      ++.++.+.
T Consensus       235 ~l~~G~i~  242 (279)
T 2ihy_A          235 LLKDGQSI  242 (279)
T ss_dssp             EEETTEEE
T ss_pred             EEECCEEE
Confidence            88887654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.14  E-value=9.7e-11  Score=102.47  Aligned_cols=117  Identities=21%  Similarity=0.305  Sum_probs=81.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh---CCCcccccCCC-------------CCcceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFKASAGS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~---g~~~~~~~~~~-------------~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   82 (228)
                      -++|+|+|+.++|||||..+|+   |..........             +.+|+....... .+++..+.++||||..|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF-QWENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCC-BCSSCBCCCEECCCSSST
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEE-EECCEEEEEEECCCcHHH
Confidence            3689999999999999999884   32211100111             123444333333 356778999999998775


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .       .+..+.+..    +|.+++|+|+.++....+...++.+...   ..  |.++++||+|....
T Consensus        81 ~-------~Ev~raL~~----~DgavlVVDa~~GV~~qT~~v~~~a~~~---~l--p~i~~INKmDr~~a  134 (638)
T 3j25_A           81 L-------AEVYRSLSV----LDGAILLISAKDGVQAQTRILFHALRKM---GI--PTIFFINKIDQNGI  134 (638)
T ss_dssp             H-------HHHHHHHTT----CSEEECCEESSCTTCSHHHHHHHHHHHH---TC--SCEECCEECCSSSC
T ss_pred             H-------HHHHHHHHH----hCEEEEEEeCCCCCcHHHHHHHHHHHHc---CC--CeEEEEeccccccC
Confidence            2       566666554    4999999999988888888887777665   22  57888999997654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.13  E-value=2.2e-10  Score=89.35  Aligned_cols=130  Identities=12%  Similarity=-0.059  Sum_probs=66.9

Q ss_pred             cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCC
Q 027090           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGG  147 (228)
Q Consensus        69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~  147 (228)
                      ..+.++||||..+..     ....+...+...... +++++++|+....+..+.. .......... ....|+++|+||+
T Consensus       109 ~d~iiiDtpG~~~~~-----~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~iv~NK~  181 (262)
T 1yrb_A          109 NDYVLIDTPGQMETF-----LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKV  181 (262)
T ss_dssp             CSEEEEECCSSHHHH-----HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCG
T ss_pred             CCEEEEeCCCccchh-----hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-ccCCCeEEEEecc
Confidence            368999999954310     000011111122245 8889999886444544432 1111111111 1123789999999


Q ss_pred             CCCccchhhH---HHHhhccCCchHHHH-----------------HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          148 DDLEDHEKTL---EDFLGHECPKPLKEI-----------------LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       148 D~~~~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      |....  .++   ..+++.. ......+                 .+....    ....+..|+.++.++++|++.|.+.
T Consensus       182 D~~~~--~~~~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l~~~i~~~  254 (262)
T 1yrb_A          182 DLLSE--EEKERHRKYFEDI-DYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLETLAYEH  254 (262)
T ss_dssp             GGCCH--HHHHHHHHHHHCH-HHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccc--ccHHHHHHHHhCh-HHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHHHHHHHHH
Confidence            98754  433   2222220 0000010                 111111    0133556788899999999999998


Q ss_pred             HHhcC
Q 027090          208 IVQNG  212 (228)
Q Consensus       208 ~~~~~  212 (228)
                      ++..+
T Consensus       255 ~~~~~  259 (262)
T 1yrb_A          255 YCTCG  259 (262)
T ss_dssp             HHHHC
T ss_pred             hcccc
Confidence            87643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.13  E-value=2.8e-12  Score=105.07  Aligned_cols=134  Identities=16%  Similarity=0.171  Sum_probs=73.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCccc----ccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      +.+++++|.+|+|||||+|+|++.....    ...+..+.|+..... .. . ...+.++||||+.+.....+....+..
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~-~~-~-~~~~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID-IP-L-DEESSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE-EE-S-SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE-EE-e-cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence            4689999999999999999999863211    111222223322211 11 1 223789999999876533322222222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhc
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~  163 (228)
                      ..+ .....++.++++++....+-.+...+++.+.   ...  .|+++++||.|....  .+++...+.
T Consensus       237 ~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~--~~~~~~~~~  297 (368)
T 3h2y_A          237 KLI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR--TKLEKADEL  297 (368)
T ss_dssp             HHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEHHHHHHH
T ss_pred             HHh-ccccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc--ccHHHHHHH
Confidence            222 1235778888888874111111111112111   112  278999999999877  666554443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.13  E-value=1e-10  Score=100.36  Aligned_cols=148  Identities=12%  Similarity=-0.033  Sum_probs=90.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH-HH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VK   95 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-~~   95 (228)
                      .++.+++|+|+||||||||+++|+|...+.+|..    ...          ....++.+.+......+..+.. ... ..
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i----~~~----------~~i~~v~Q~~~~~~~~tv~~~~-~~~~~~  374 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI----EWD----------LTVAYKPQYIKADYEGTVYELL-SKIDAS  374 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC----CCC----------CCEEEECSSCCCCCSSBHHHHH-HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE----EEC----------ceEEEEecCCcCCCCCcHHHHH-Hhhhcc
Confidence            3578999999999999999999999887555532    210          0111222223221111111111 111 00


Q ss_pred             ------HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc--
Q 027090           96 ------CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE--  164 (228)
Q Consensus        96 ------~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~--  164 (228)
                            ...........--+.-.....+|+|+++++.+++++..+|   +++|   |++++|....  ..+.+.++++  
T Consensus       375 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p---~lLlLDEPt~~LD~~~~--~~i~~~l~~l~~  449 (538)
T 1yqt_A          375 KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA---DIYLLDEPSAYLDVEQR--LAVSRAIRHLME  449 (538)
T ss_dssp             HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC---SEEEEECTTTTCCHHHH--HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC---CEEEEeCCcccCCHHHH--HHHHHHHHHHHH
Confidence                  0011111111100000111479999999999999998887   4665   8899999877  7777776643  


Q ss_pred             --C------CchHHHHHHhcCCeEEEee
Q 027090          165 --C------PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       165 --~------~~~~~~~~~~~~~~~~~~~  184 (228)
                        .      +|++..+...|++.+++.+
T Consensus       450 ~~g~tvi~vsHd~~~~~~~~drv~vl~~  477 (538)
T 1yqt_A          450 KNEKTALVVEHDVLMIDYVSDRLMVFEG  477 (538)
T ss_dssp             HHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             hCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence              1      8999999999999888875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.12  E-value=1.2e-11  Score=101.62  Aligned_cols=161  Identities=16%  Similarity=0.128  Sum_probs=93.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-ee--eeCCcEEEEEeCCCCCCC---------C
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TV--LKDGQVVNVIDTPGLFDL---------S   83 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~iDtpG~~~~---------~   83 (228)
                      -+++..++|+|+||||||||+++|+|... .+|    .+........ ..  ......-.+.+.|.++..         .
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G----~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~  118 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG----EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA  118 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEE----EEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCe----EEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcc
Confidence            45678999999999999999999999864 333    1111110000 00  000112234444443321         0


Q ss_pred             CCcHHHHHHHHHHHhhc---c---CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           84 AGSEFVGKEIVKCLGMA---K---DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        84 ~~~~~~~~~~~~~~~~~---~---~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                      ........+....+...   .   ...+.  .+.+....+|+|++|++.++++++.+|.   ++|   |++.+|....  
T Consensus       119 ~~~~~~v~~~l~~~~L~~~~~~~p~~l~~--~i~~~g~~LSGGqrQRvalARAL~~~P~---lLLLDEPts~LD~~~~--  191 (390)
T 3gd7_A          119 AHSDQEIWKVADEVGLRSVIEQFPGKLDF--VLVDGGCVLSHGHKQLMCLARSVLSKAK---ILLLDEPSAHLDPVTY--  191 (390)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHTTSTTGGGC--EECTTTTTSCHHHHHHHHHHHHHHTTCC---EEEEESHHHHSCHHHH--
T ss_pred             ccCHHHHHHHHHHhCCHHHHhhccccccc--ccccccccCCHHHHHHHHHHHHHhcCCC---EEEEeCCccCCCHHHH--
Confidence            01111112222221110   0   11222  1122224599999999999999998884   555   8899998777  


Q ss_pred             hhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          155 KTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       155 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      ..+...+++..        +|+.. .+..|++++++.+|++..
T Consensus       192 ~~l~~~l~~~~~~~tvi~vtHd~e-~~~~aDri~vl~~G~i~~  233 (390)
T 3gd7_A          192 QIIRRTLKQAFADCTVILCEARIE-AMLECDQFLVIEENKVRQ  233 (390)
T ss_dssp             HHHHHHHHTTTTTSCEEEECSSSG-GGTTCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEEcCHH-HHHhCCEEEEEECCEEEE
Confidence            77877777643        67764 456699888888887654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.11  E-value=3.7e-11  Score=104.27  Aligned_cols=148  Identities=11%  Similarity=-0.047  Sum_probs=89.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH-HH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VK   95 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~-~~   95 (228)
                      .++.+++|+|+||+|||||+++|+|...+.+|..    ...          ....++.+.+......+..+.. ... ..
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I----~~~----------~~i~~v~Q~~~~~~~~tv~e~~-~~~~~~  444 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV----EWD----------LTVAYKPQYIKAEYEGTVYELL-SKIDSS  444 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC----CCC----------CCEEEECSSCCCCCSSBHHHHH-HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE----EEe----------eEEEEEecCccCCCCCcHHHHH-Hhhhcc
Confidence            4577999999999999999999999877655532    210          0111222333221111111111 111 00


Q ss_pred             H------HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhcc--
Q 027090           96 C------LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE--  164 (228)
Q Consensus        96 ~------~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~--  164 (228)
                      .      ..........--+.-..-..+|+|+++++.+++++..++.   ++|   |++++|....  ..+.+.++.+  
T Consensus       445 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~---lLlLDEPt~~LD~~~~--~~l~~~l~~l~~  519 (607)
T 3bk7_A          445 KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD---IYLLDEPSAYLDVEQR--LAVSRAIRHLME  519 (607)
T ss_dssp             HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCS---EEEEECTTTTCCHHHH--HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC---EEEEeCCccCCCHHHH--HHHHHHHHHHHH
Confidence            0      0000000000000000114799999999999999988873   555   8899998877  7777776653  


Q ss_pred             --C------CchHHHHHHhcCCeEEEee
Q 027090          165 --C------PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       165 --~------~~~~~~~~~~~~~~~~~~~  184 (228)
                        .      +|++..+...|++.+++..
T Consensus       520 ~~g~tvi~vsHd~~~~~~~adrv~vl~~  547 (607)
T 3bk7_A          520 KNEKTALVVEHDVLMIDYVSDRLIVFEG  547 (607)
T ss_dssp             HTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             hCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence              1      8999999999998888764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.10  E-value=7.9e-10  Score=97.89  Aligned_cols=120  Identities=28%  Similarity=0.294  Sum_probs=80.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCC---cc----ccc---------CCCCCcceeeEeEeeee------eCCcEEEEE
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRK---AF----KAS---------AGSSGVTKTCEMKTTVL------KDGQVVNVI   74 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~---~~----~~~---------~~~~~~t~~~~~~~~~~------~~~~~~~~i   74 (228)
                      ++-++|+|+|+.++|||||..+|+-..   ..    ..+         ...+.+|+.........      .++..+.++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            456899999999999999999885211   00    000         11223444433333221      124579999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ||||..|..       .|..+++...    |.+++|+|+.++....+...++.+...   ..  |.++++||+|....
T Consensus        91 DTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTTC
T ss_pred             eCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccCc
Confidence            999988753       6777777666    999999999999999999888877654   33  68899999998654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.10  E-value=2.1e-10  Score=94.31  Aligned_cols=92  Identities=14%  Similarity=0.126  Sum_probs=58.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce-eeEeEeeeeeCC-----------------cEEEEEeCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG-----------------QVVNVIDTP   77 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~-----------------~~~~~iDtp   77 (228)
                      ...+.+++|+|+||||||||+|+|+|...  ....+.+.++ ........ ..+                 ..+.++|+|
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~--a~~~~~p~tTi~p~~G~v~-v~~~r~~~l~~~~~~~~~v~~~i~lvD~p   93 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVL--GNPANYPYATIDPEEAKVA-VPDERFDWLCEAYKPKSRVPAFLTVFDIA   93 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTT--TSTTCCSSCCCCTTEEEEE-ECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCc--ccccCCCceeecceeeeee-eCCcchhhhhhhcccccccCcceEEEecc
Confidence            34567999999999999999999999653  1222333322 22211111 221                 347899999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090           78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (228)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (228)
                      |+.......+.+...+...+    ..+|++++++++.
T Consensus        94 Gl~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~  126 (392)
T 1ni3_A           94 GLTKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF  126 (392)
T ss_dssp             GGCCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred             ccccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence            98876554433323333333    3679999999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.10  E-value=5e-11  Score=102.12  Aligned_cols=66  Identities=15%  Similarity=-0.019  Sum_probs=54.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCV  181 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~  181 (228)
                      ..+|+|++|++.+++++..+|.   ++|   |++.+|....  ..+.+.++++.          +|++..+...|+++++
T Consensus       384 ~~LSGGq~QRv~iAraL~~~p~---lLlLDEPT~gLD~~~~--~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~v  458 (538)
T 3ozx_A          384 NDLSGGELQKLYIAATLAKEAD---LYVLDQPSSYLDVEER--YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV  458 (538)
T ss_dssp             GGCCHHHHHHHHHHHHHHSCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hhCCHHHHHHHHHHHHHHcCCC---EEEEeCCccCCCHHHH--HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            4799999999999999998884   666   8899998876  77776665431          8999999999999988


Q ss_pred             EeeC
Q 027090          182 LFDN  185 (228)
Q Consensus       182 ~~~~  185 (228)
                      +..+
T Consensus       459 l~~~  462 (538)
T 3ozx_A          459 FKGE  462 (538)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            8753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.09  E-value=3.4e-12  Score=110.64  Aligned_cols=162  Identities=16%  Similarity=0.119  Sum_probs=97.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV---   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~---   89 (228)
                      -+++..++|+|+||||||||+++|.|...+.+|    .+..+......   .........+.+.|.++... ..++.   
T Consensus       364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G----~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t-v~eni~~~  438 (578)
T 4a82_A          364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG----QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT-VKENILLG  438 (578)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE----EEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSB-HHHHHGGG
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc----EEEECCEEhhhCCHHHHhhheEEEeCCCccCccc-HHHHHhcC
Confidence            356789999999999999999999998775544    22221111000   00011223445556554321 11110   


Q ss_pred             -----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 -----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 -----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                           .+++.+.....         ..+.+..+  -+....+|+|++|++.++++++.+|   ++++   |++.+|....
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~--~~~g~~LSgGq~Qrv~lAral~~~p---~illlDEpts~LD~~~~  513 (578)
T 4a82_A          439 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEV--GERGVKLSGGQKQRLSIARIFLNNP---PILILDEATSALDLESE  513 (578)
T ss_dssp             CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC--CGGGTTSCHHHHHHHHHHHHHHHCC---SEEEEESTTTTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhh--ccCCCcCCHHHHHHHHHHHHHHcCC---CEEEEECccccCCHHHH
Confidence                 11222222111         01222111  1222479999999999999999888   4666   7899998766


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                        ..+.+.++...        +|.+..+ +.|++++++.+|++...
T Consensus       514 --~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~~l~~G~i~~~  556 (578)
T 4a82_A          514 --SIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVET  556 (578)
T ss_dssp             --HHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEEEETTEEEEE
T ss_pred             --HHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEEEEECCEEEEE
Confidence              67776665433        7888776 46998999988876543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.09  E-value=2.6e-12  Score=105.32  Aligned_cols=127  Identities=18%  Similarity=0.173  Sum_probs=71.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC-----CcccccCCCCC-cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR-----KAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~-----~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      +.+++++|.+|+|||||+|+|++.     .....+  ..+ .|.......    -...+.++||||+.+..........+
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~--~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~  235 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS--YFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDAR  235 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE--ECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec--CCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHH
Confidence            468999999999999999999986     221111  222 232222221    12237899999998764322222122


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~  159 (228)
                      ....+ ....+++.++++++....+-.+...++..+.   ...  .|+++++||.|....  .+++.
T Consensus       236 ~l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~--~~~~~  294 (369)
T 3ec1_A          236 DLKII-TPKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR--TKLEK  294 (369)
T ss_dssp             THHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEGGG
T ss_pred             HHHHH-hcccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc--ccHHH
Confidence            22222 1235789999999884111111111122221   112  278899999999866  44443

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.07  E-value=5.7e-12  Score=109.62  Aligned_cols=162  Identities=16%  Similarity=0.154  Sum_probs=95.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH---
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV---   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~---   89 (228)
                      -+++..++|+|+||||||||++.|+|...+.+|    .+..+......   .........+.+.|.++.. +..++.   
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G----~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~  452 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG----QILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYG  452 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE----EEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe----EEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcC
Confidence            457789999999999999999999998775544    22221111000   0001112344455555432 111110   


Q ss_pred             -----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 -----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 -----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                           .+++.......         ..+.+..+  -+....+|+|++|++.++++++.+|   ++++   |++.+|....
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~--~~~g~~LSgGq~Qrv~iAral~~~p---~illlDEpts~LD~~~~  527 (598)
T 3qf4_B          453 NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVL--TDNGEDLSQGQRQLLAITRAFLANP---KILILDEATSNVDTKTE  527 (598)
T ss_dssp             STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC--HHHHTTSCHHHHHHHHHHHHHHTCC---SEEEECCCCTTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCHHHHHhccccccchh--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEECCccCCCHHHH
Confidence                 01111111110         00111111  0111479999999999999999988   4666   8899998766


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                        ..+.+.+.+..        +|.+..+. .|+.++++.+|++...
T Consensus       528 --~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~  570 (598)
T 3qf4_B          528 --KSIQAAMWKLMEGKTSIIIAHRLNTIK-NADLIIVLRDGEIVEM  570 (598)
T ss_dssp             --HHHHHHHHHHHTTSEEEEESCCTTHHH-HCSEEEEECSSSEEEC
T ss_pred             --HHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE
Confidence              67766665432        78888764 5999999988886543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.05  E-value=1.5e-11  Score=106.66  Aligned_cols=160  Identities=18%  Similarity=0.190  Sum_probs=94.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcHHH----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSEFV----   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~~~----   89 (228)
                      +++..++|+|+||||||||++.|+|...+.+|    .+..+.....   ..........+.+.|.++.. +..++.    
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G----~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~  441 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEG----HILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR  441 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE----EEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccCCCCC----eEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccC
Confidence            56789999999999999999999998765544    2221111000   00001112344455544331 111100    


Q ss_pred             -----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 -----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 -----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                           .+++...+...         ..+.+..  +-+....+|+|++|++.++++++.+|   ++++   |++.+|....
T Consensus       442 ~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~--~~~~~~~LSgGq~qrl~iAral~~~p---~illlDEpts~LD~~~~  516 (582)
T 3b60_A          442 TEEYSREQIEEAARMAYAMDFINKMDNGLDTI--IGENGVLLSGGQRQRIAIARALLRDS---PILILDEATSALDTESE  516 (582)
T ss_dssp             TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSB--CCTTSCSSCHHHHHHHHHHHHHHHCC---SEEEEETTTSSCCHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCHHHHHhcccccccc--ccCCCCCCCHHHHHHHHHHHHHHhCC---CEEEEECccccCCHHHH
Confidence                 01222222111         0112211  11222579999999999999999888   4666   8899998876


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                        ..+.+.+++..        +|.+..+ +.|++++++.+|++..
T Consensus       517 --~~i~~~l~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~~  558 (582)
T 3b60_A          517 --RAIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGIIVE  558 (582)
T ss_dssp             --HHHHHHHHHHHTTSEEEEECSCGGGT-TTCSEEEEEETTEEEE
T ss_pred             --HHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEE
Confidence              77777665532        7887765 4688888888887653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.04  E-value=4.4e-11  Score=112.22  Aligned_cols=170  Identities=16%  Similarity=0.160  Sum_probs=103.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE---eeeeeCCcEEEEEeCCCCCCCCC---------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK---TTVLKDGQVVNVIDTPGLFDLSA---------   84 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~iDtpG~~~~~~---------   84 (228)
                      +++.+|+|+|++|||||||+++|+|...+.+|    .+..+....   .........-.+-+.|-+++..-         
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G----~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld 1178 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLGG----EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLD 1178 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTSSCCSSS----EEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCccCCCC----EEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCC
Confidence            57889999999999999999999998764444    333322111   00111122233444454332110         


Q ss_pred             CcHHHHHHHHHHHhh---------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           85 GSEFVGKEIVKCLGM---------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        85 ~~~~~~~~~~~~~~~---------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                      +.+...+++..+.+.         ...+.|..+  -+.+..+|+|++|++.+++++++++   ++++   +.+.+|...+
T Consensus      1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v--ge~G~~LSgGQrQriaiARAllr~~---~ILiLDEaTSaLD~~tE 1253 (1321)
T 4f4c_A         1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDTESE 1253 (1321)
T ss_dssp             TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE--TTTSCSSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSTTSHHH
T ss_pred             CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe--cCCCcccCHHHHHHHHHHHHHHhCC---CEEEEeCccccCCHHHH
Confidence            001111233333321         123445432  2333579999999999999999988   4666   7789998876


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  202 (228)
                        ..+.+.+++..        .|.+..+ ..|+.++++.+|++...    ..-++|++
T Consensus      1254 --~~Iq~~l~~~~~~~TvI~IAHRLsTi-~~aD~I~Vld~G~IvE~----Gth~eLl~ 1304 (1321)
T 4f4c_A         1254 --KVVQEALDRAREGRTCIVIAHRLNTV-MNADCIAVVSNGTIIEK----GTHTQLMS 1304 (1321)
T ss_dssp             --HHHHHHHTTTSSSSEEEEECSSSSTT-TTCSEEEEESSSSEEEE----ECHHHHHH
T ss_pred             --HHHHHHHHHHcCCCEEEEeccCHHHH-HhCCEEEEEECCEEEEE----CCHHHHHh
Confidence              77777777643        5666543 57899999999987654    33456654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.04  E-value=1.9e-10  Score=93.52  Aligned_cols=88  Identities=16%  Similarity=0.089  Sum_probs=51.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeeEeEeeeeeCC-----------------cEEEEEeCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDG-----------------QVVNVIDTPGLFD   81 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~-----------------~~~~~iDtpG~~~   81 (228)
                      .+|+|+|.+|+|||||+|+|++....   ..+.+. |......... ..+                 ..+.++||||+..
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~---v~~~p~tTi~p~~g~v~-~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~   78 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIE---AANYPFCTIEPNTGVVP-MPDPRLDALAEIVKPERILPTTMEFVDIAGLVA   78 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCCSSEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCc---ccCCCCceECceEEEEe-cCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence            58999999999999999999987531   112221 2222111111 111                 4689999999875


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN  115 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (228)
                      .....+.+...+..    ..+.+|++++|+|+.+
T Consensus        79 ~a~~~~gl~~~fl~----~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           79 GASKGEGLGNKFLA----NIRETDAIGHVVRCFE  108 (363)
T ss_dssp             THHHHGGGTCCHHH----HHHTCSEEEEEEECSC
T ss_pred             cccccchHHHHHHH----HHHhcCeEEEEEecCC
Confidence            42111111111222    2346799999999973

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.03  E-value=2.4e-11  Score=104.05  Aligned_cols=66  Identities=12%  Similarity=0.021  Sum_probs=54.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEe
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLF  183 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  183 (228)
                      ..+|+++++++.++.+++.+|.   +++   |++.+|....  .++.+.++++.        +|++..+...|+..+++.
T Consensus       137 ~~LSgGe~Qrv~iA~aL~~~p~---illlDEPts~LD~~~~--~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~  211 (538)
T 3ozx_A          137 NILSGGGLQRLLVAASLLREAD---VYIFDQPSSYLDVRER--MNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIY  211 (538)
T ss_dssp             GGCCHHHHHHHHHHHHHHSCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHHcCCC---EEEEECCcccCCHHHH--HHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEec
Confidence            4799999999999999998884   555   8899998876  77777776653        899999999999887776


Q ss_pred             eC
Q 027090          184 DN  185 (228)
Q Consensus       184 ~~  185 (228)
                      .+
T Consensus       212 ~~  213 (538)
T 3ozx_A          212 GE  213 (538)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.03  E-value=2.6e-11  Score=104.00  Aligned_cols=66  Identities=14%  Similarity=0.023  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++.+++.+|.   ++|   |++.+|....  .++.++++++.         +|++..+...|+.++++
T Consensus       157 ~~LSgGekQRv~iAraL~~~P~---lLlLDEPTs~LD~~~~--~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl  231 (538)
T 1yqt_A          157 QHLSGGELQRVAIAAALLRNAT---FYFFDEPSSYLDIRQR--LNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV  231 (538)
T ss_dssp             GGCCHHHHHHHHHHHHHHSCCS---EEEEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHhcCCC---EEEEECCcccCCHHHH--HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4799999999999999998884   555   8899998876  67776665542         89999999999998887


Q ss_pred             eeC
Q 027090          183 FDN  185 (228)
Q Consensus       183 ~~~  185 (228)
                      .++
T Consensus       232 ~~~  234 (538)
T 1yqt_A          232 YGE  234 (538)
T ss_dssp             EEE
T ss_pred             cCc
Confidence            654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.03  E-value=3e-10  Score=93.23  Aligned_cols=91  Identities=16%  Similarity=0.151  Sum_probs=45.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeeEeEeeeeeC----------------CcEEEEEeCCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKD----------------GQVVNVIDTPGL   79 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~----------------~~~~~~iDtpG~   79 (228)
                      ..+.+++|+|.+|+|||||+|+|++....   ..+.+. |............                ...+.++||||+
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~---~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl   96 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQAS---AENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL   96 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcc---ccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence            34578999999999999999999998541   122222 2222211111100                234899999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090           80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (228)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (228)
                      .......+.+...+...    .+.+|++++|+|+.
T Consensus        97 ~~~as~~~glg~~~l~~----ir~aD~Il~VvD~~  127 (396)
T 2ohf_A           97 VKGAHNGQGLGNAFLSH----ISACDGIFHLTRAF  127 (396)
T ss_dssp             ----------CCHHHHH----HHTSSSEEEEEEC-
T ss_pred             ccccchhhHHHHHHHHH----HHhcCeEEEEEecC
Confidence            76443222111122222    34679999999986

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.02  E-value=7.9e-11  Score=102.10  Aligned_cols=140  Identities=14%  Similarity=0.015  Sum_probs=85.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC-------------CC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS-------------AG   85 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~-------------~~   85 (228)
                      +.+++|+|+||||||||+++|+|...+.+|......  ...            .+.+.+......             ..
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~--~i~------------~~~q~~~~~~~~tv~e~~~~~~~~~~~  443 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL--NVS------------MKPQKIAPKFPGTVRQLFFKKIRGQFL  443 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSC--CEE------------EECSSCCCCCCSBHHHHHHHHCSSTTT
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCC--cEE------------EecccccccCCccHHHHHHHHhhcccc
Confidence            367999999999999999999999876665311000  000            011111100000             00


Q ss_pred             cHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhh
Q 027090           86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLG  162 (228)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~  162 (228)
                      ......++...+... ...+      .....+|+|++|++.+++++..+|.   ++|   |++.+|....  ..+.+.++
T Consensus       444 ~~~~~~~~l~~l~l~-~~~~------~~~~~LSGGqkQRv~iAraL~~~p~---lLlLDEPT~gLD~~~~--~~i~~ll~  511 (608)
T 3j16_B          444 NPQFQTDVVKPLRID-DIID------QEVQHLSGGELQRVAIVLALGIPAD---IYLIDEPSAYLDSEQR--IICSKVIR  511 (608)
T ss_dssp             SHHHHHHTHHHHTST-TTSS------SBSSSCCHHHHHHHHHHHHTTSCCS---EEEECCTTTTCCHHHH--HHHHHHHH
T ss_pred             cHHHHHHHHHHcCCh-hhhc------CChhhCCHHHHHHHHHHHHHHhCCC---EEEEECCCCCCCHHHH--HHHHHHHH
Confidence            111111222222111 0001      1115799999999999999988873   665   8899998766  66666665


Q ss_pred             ccC----------CchHHHHHHhcCCeEEEee
Q 027090          163 HEC----------PKPLKEILQLCDNRCVLFD  184 (228)
Q Consensus       163 ~~~----------~~~~~~~~~~~~~~~~~~~  184 (228)
                      ++.          +|++..+...|++.+++..
T Consensus       512 ~l~~~~g~tviivtHdl~~~~~~aDrvivl~~  543 (608)
T 3j16_B          512 RFILHNKKTAFIVEHDFIMATYLADKVIVFEG  543 (608)
T ss_dssp             HHHHHHTCEEEEECSCHHHHHHHCSEEEECEE
T ss_pred             HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            431          8999999999998888765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.01  E-value=3.9e-10  Score=97.79  Aligned_cols=67  Identities=10%  Similarity=0.020  Sum_probs=55.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++.+++.+|.   +++   |++.+|....  ..+.+.++++.         +|++..+...|+..+++
T Consensus       220 ~~LSgGe~Qrv~iAraL~~~p~---llllDEPts~LD~~~~--~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl  294 (608)
T 3j16_B          220 EKLSGGELQRFAIGMSCVQEAD---VYMFDEPSSYLDVKQR--LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII  294 (608)
T ss_dssp             TTCCHHHHHHHHHHHHHHSCCS---EEEEECTTTTCCHHHH--HHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHCCHHHHHHHHHHHHHHhCCC---EEEEECcccCCCHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            5899999999999999998884   555   8899998876  77777776653         89999999999988888


Q ss_pred             eeCC
Q 027090          183 FDNK  186 (228)
Q Consensus       183 ~~~~  186 (228)
                      ..+.
T Consensus       295 ~~~~  298 (608)
T 3j16_B          295 YGVP  298 (608)
T ss_dssp             ESCT
T ss_pred             eCCc
Confidence            6543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.99  E-value=4.4e-11  Score=103.81  Aligned_cols=66  Identities=15%  Similarity=0.062  Sum_probs=53.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++++++.+|.   ++|   |++.+|....  ..+.+.++++.         +|++..+...|+.++++
T Consensus       227 ~~LSGGekQRvaIAraL~~~P~---lLlLDEPTs~LD~~~~--~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl  301 (607)
T 3bk7_A          227 HQLSGGELQRVAIAAALLRKAH---FYFFDEPSSYLDIRQR--LKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV  301 (607)
T ss_dssp             GGCCHHHHHHHHHHHHHHSCCS---EEEEECTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHhcCCC---EEEEECCcccCCHHHH--HHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence            4799999999999999998884   555   8899998876  67776666542         89999998899988877


Q ss_pred             eeC
Q 027090          183 FDN  185 (228)
Q Consensus       183 ~~~  185 (228)
                      ..+
T Consensus       302 ~~~  304 (607)
T 3bk7_A          302 YGE  304 (607)
T ss_dssp             ESC
T ss_pred             CCC
Confidence            654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.99  E-value=1.9e-09  Score=93.89  Aligned_cols=128  Identities=16%  Similarity=0.154  Sum_probs=65.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCccee-eE--------eEe----------------------------
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKT-CE--------MKT----------------------------   62 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~-~~--------~~~----------------------------   62 (228)
                      .++|+|++|||||||+++|+|...+ .+|........- ..        ...                            
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~  126 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA  126 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence            4999999999999999999998755 344221111100 00        000                            


Q ss_pred             --------------eeeeCCcEEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhc-cCCccEEEEEEeCCCCCCHHHHHHH
Q 027090           63 --------------TVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMA-KDGIHAFLVVFSVTNRFSQEEETAV  125 (228)
Q Consensus        63 --------------~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~il~v~~~~~~~s~~~~~~l  125 (228)
                                    ........+.++|.||+.....  .+....+.+...+... ......++.++..+..+.  ....+
T Consensus       127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l  204 (608)
T 3szr_A          127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEAL  204 (608)
T ss_dssp             CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHH
T ss_pred             CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHH
Confidence                          0000123488999999876422  2333334455555443 233455666666543333  22344


Q ss_pred             HHHHHHhCccccccEEEEEeCCCCCcc
Q 027090          126 HRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus       126 ~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      +++...-...  .++++|+||.|....
T Consensus       205 ~la~~v~~~g--~rtI~VlTK~Dlv~~  229 (608)
T 3szr_A          205 SMAQEVDPEG--DRTIGILTKPDLVDK  229 (608)
T ss_dssp             HHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred             HHHHHHhhcC--CceEEEecchhhcCc
Confidence            5555543222  269999999998755

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.94  E-value=2.5e-09  Score=92.14  Aligned_cols=108  Identities=20%  Similarity=0.200  Sum_probs=61.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCCcceeeEeEe--eeeeCCcEEEEEeCCCCCCCCC-CcHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSA-GSEFVGKE   92 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~--~~~~~~~~~~~iDtpG~~~~~~-~~~~~~~~   92 (228)
                      .+..+|+|+|++|+|||||+|.|+|.... ..+....+.|.......  .....+..+.++||||+.+... ....- ..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~-~~  114 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQND-SW  114 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTH-HH
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHH-HH
Confidence            44578999999999999999999998641 11111112222221111  1112456799999999987543 22211 12


Q ss_pred             HHH-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 027090           93 IVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL  131 (228)
Q Consensus        93 ~~~-~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~  131 (228)
                      ++. .....    +  ++++++...++..+...+.++...
T Consensus       115 ~fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e~  148 (592)
T 1f5n_A          115 IFALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTEL  148 (592)
T ss_dssp             HHHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHTH
T ss_pred             HHHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHHH
Confidence            221 11111    2  345555567888888776665443

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.92  E-value=2.1e-09  Score=87.79  Aligned_cols=89  Identities=20%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCc-ceeeEeEeeee--------------------eCCcEEEEEeCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVL--------------------KDGQVVNVIDTPG   78 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~--------------------~~~~~~~~iDtpG   78 (228)
                      .+|+|+|.+|+|||||+|+|++...   .....+. |...+......                    .....+.++||||
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~---~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG   78 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANA---LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG   78 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHT---TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC---cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence            4799999999999999999998642   1122222 22211111110                    1134689999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC
Q 027090           79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN  115 (228)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (228)
                      +.......+.+...+...+    +.+|++++|+|+.+
T Consensus        79 l~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~  111 (368)
T 2dby_A           79 LVKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred             ccccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence            9765433222223333333    35699999999873

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.91  E-value=1.3e-10  Score=108.90  Aligned_cols=161  Identities=16%  Similarity=0.102  Sum_probs=95.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCCCCcHHH----
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLSAGSEFV----   89 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~~~~~~~----   89 (228)
                      +++.+++|+|+||||||||+++|.|...+.+|    .+..+......   .......-.+.+.|.+.... ..+++    
T Consensus       414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G----~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~t-i~eNi~~g~  488 (1284)
T 3g5u_A          414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG----MVSIDGQDIRTINVRYLREIIGVVSQEPVLFATT-IAENIRYGR  488 (1284)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE----EEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSC-HHHHHHHHC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEEHHhCCHHHHHhheEEEcCCCccCCcc-HHHHHhcCC
Confidence            56789999999999999999999998765444    22222111000   00011123455556554331 11111    


Q ss_pred             ----HHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccc
Q 027090           90 ----GKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDH  153 (228)
Q Consensus        90 ----~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~  153 (228)
                          .+++.......         ..+.+..+  -.....+|+|+++++.++++++.+|   ++++   |++.+|.... 
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~--~~~g~~LSgGq~QriaiARal~~~p---~iliLDEpts~LD~~~~-  562 (1284)
T 3g5u_A          489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLV--GERGAQLSGGQKQRIAIARALVRNP---KILLLDEATSALDTESE-  562 (1284)
T ss_dssp             SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCC--SSSSCSSCHHHHHHHHHHHHHHHCC---SEEEEESTTCSSCHHHH-
T ss_pred             CCCCHHHHHHHHHHhCcHHHHHhccccccccc--cCCCCccCHHHHHHHHHHHHHhcCC---CEEEEECCCCCCCHHHH-
Confidence                01222211111         11222111  1122479999999999999999888   4666   7799998765 


Q ss_pred             hhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          154 EKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       154 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                       ..+.+.++...        +|.+..+. .|+.++++.+|++...
T Consensus       563 -~~i~~~l~~~~~~~t~i~itH~l~~i~-~~d~i~vl~~G~i~~~  605 (1284)
T 3g5u_A          563 -AVVQAALDKAREGRTTIVIAHRLSTVR-NADVIAGFDGGVIVEQ  605 (1284)
T ss_dssp             -HHHHHHHHHHHTTSEEEEECSCHHHHT-TCSEEEECSSSCCCCE
T ss_pred             -HHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE
Confidence             66666654322        78888774 5998888888887543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.89  E-value=4.2e-09  Score=83.11  Aligned_cols=67  Identities=21%  Similarity=0.257  Sum_probs=41.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      ....+++++|.+|+|||||+|+|+|......+  ..+.++.... ..  .-+..+.++||||+.......++
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~--~~~g~T~~~~-~~--~~~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG--DRPGITTSQQ-WV--KVGKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------C-CE--EETTTEEEEECCCCCCSCCCCHH
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecC--CCCCeeeeeE-EE--EeCCCEEEEECcCcCCCCCCCHH
Confidence            34578999999999999999999998753332  2222322211 11  11346899999999877654443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.89  E-value=2.7e-08  Score=84.27  Aligned_cols=123  Identities=15%  Similarity=0.177  Sum_probs=68.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh------CCCcccccCCCC-Ccc--------e--eeEeEee--------------e-
Q 027090           17 NGERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSS-GVT--------K--TCEMKTT--------------V-   64 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~------g~~~~~~~~~~~-~~t--------~--~~~~~~~--------------~-   64 (228)
                      .+..+|+|+|++||||||+++.|+      |..+........ +..        .  ....+..              . 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345789999999999999999998      654311111000 000        0  0000000              0 


Q ss_pred             -eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccccc-EEE
Q 027090           65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIV  142 (228)
Q Consensus        65 -~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~-~ll  142 (228)
                       ...+..+.+|||||....   ......++......  -.+|.+++|+++....+  .....+.+..    ..  | ..+
T Consensus       179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~----~~--~i~gv  245 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKD----KV--DVASV  245 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHH----HH--CCCCE
T ss_pred             HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHh----hc--CceEE
Confidence             014567999999997753   22233343333221  16789999999975443  2222222221    11  5 478


Q ss_pred             EEeCCCCCcc
Q 027090          143 VFTGGDDLED  152 (228)
Q Consensus       143 v~~~~D~~~~  152 (228)
                      ++||+|....
T Consensus       246 VlNK~D~~~~  255 (504)
T 2j37_W          246 IVTKLDGHAK  255 (504)
T ss_dssp             EEECTTSCCC
T ss_pred             EEeCCccccc
Confidence            9999998754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.87  E-value=1.4e-10  Score=108.54  Aligned_cols=162  Identities=19%  Similarity=0.174  Sum_probs=96.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC---CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC---------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS---------   83 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~---------   83 (228)
                      -+++.+++|+|+||||||||+++|+|...+.+|.   ...+....    ...........+.+.|-+++..         
T Consensus      1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A         1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL----NVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp             ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSS----CHHHHTTSCEEEESSCCCCSSBHHHHHTCCC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccC----CHHHHHhceEEECCCCccccccHHHHHhccC
Confidence            4567899999999999999999999987765541   11111100    0000112223444445433211         


Q ss_pred             ----CCcHHHHHHHHHH------HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           84 ----AGSEFVGKEIVKC------LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        84 ----~~~~~~~~~~~~~------~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                          ...++. .+..+.      +.....+.|..+  -+....+|+|++|++.++++++.+|.   +++   |++.+|..
T Consensus      1132 ~~~~~~~~~i-~~~~~~~~~~~~i~~l~~gldt~v--ge~G~~LSgGq~Qrv~iARal~~~p~---iLiLDEpTs~lD~~ 1205 (1284)
T 3g5u_A         1132 NSRVVSYEEI-VRAAKEANIHQFIDSLPDKYNTRV--GDKGTQLSGGQKQRIAIARALVRQPH---ILLLDEATSALDTE 1205 (1284)
T ss_dssp             SSCCCCHHHH-HHHHHHHTCHHHHSSTTTGGGCBC--STTSCSSCHHHHHHHHHHHHHHHCCS---SEEEESCSSSCCHH
T ss_pred             CCCCCCHHHH-HHHHHHhCcHHHHHhCcccccccc--CCCCCccCHHHHHHHHHHHHHHcCCC---EEEEeCCcccCCHH
Confidence                111111 111111      111111222211  12224799999999999999998883   555   88999988


Q ss_pred             ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ..  ..+.+.++...        +|.+..+ ..|++++++.+|++...
T Consensus      1206 ~~--~~i~~~l~~~~~~~tvi~isH~l~~i-~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A         1206 SE--KVVQEALDKAREGRTCIVIAHRLSTI-QNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp             HH--HHHHHHHHHHSSSSCEEEECSCTTGG-GSCSEEEEEETBEEEEE
T ss_pred             HH--HHHHHHHHHhCCCCEEEEEecCHHHH-HcCCEEEEEECCEEEEE
Confidence            76  77777776533        7888876 56999999988876543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.87  E-value=4.3e-10  Score=101.55  Aligned_cols=68  Identities=9%  Similarity=-0.005  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      ..+|+|+++++.++++++.+|.   ++|   |++++|....  .++.++++...      +|++..+...|++.+++.++
T Consensus       547 ~~LSGGqkQRvaLArAL~~~P~---lLLLDEPTs~LD~~~~--~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G  621 (986)
T 2iw3_A          547 SALSGGWKMKLALARAVLRNAD---ILLLDEPTNHLDTVNV--AWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGL  621 (986)
T ss_dssp             GGCCHHHHHHHHHHHHHHTTCS---EEEEESTTTTCCHHHH--HHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred             ccCCHHHHHHHHHHHHHhcCCC---EEEEECCccCCCHHHH--HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence            4799999999999999998884   555   8899999887  88888887632      89999999999999988887


Q ss_pred             CC
Q 027090          186 KT  187 (228)
Q Consensus       186 ~~  187 (228)
                      .+
T Consensus       622 ~i  623 (986)
T 2iw3_A          622 KL  623 (986)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.86  E-value=1.4e-09  Score=102.26  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCC-----------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDL-----------   82 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~-----------   82 (228)
                      +++..++|+|++|||||||++.|+|...+.+|    .+..+.....   ........-.+-+.|-+++.           
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G----~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~  517 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYYDVLKG----KITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE  517 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE----EEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhccccccccC----cccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc
Confidence            57789999999999999999999998775544    2222111000   00000112233444433221           


Q ss_pred             CCCcHHHHHHHHHHHhh---------ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCC
Q 027090           83 SAGSEFVGKEIVKCLGM---------AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDL  150 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~---------~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~  150 (228)
                      ....    +++.++...         ...+.+..+  -+.+..+|+|+++++.+++++..++   +++|   +++.+|..
T Consensus       518 ~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~v--Ge~G~~LSGGQkQRiaiARAl~~~~---~IliLDE~tSaLD~~  588 (1321)
T 4f4c_A          518 GITR----EEMVAACKMANAEKFIKTLPNGYNTLV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDAE  588 (1321)
T ss_dssp             TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEE--SSSSCCCCHHHHHHHHHHHHHTTCC---SEEEEESTTTTSCTT
T ss_pred             cchH----HHHHHHHHHccchhHHHcCCCCCccEe--cCCCCCCCHHHHHHHHHHHHHccCC---CEEEEecccccCCHH
Confidence            1122    233333221         112334332  2333579999999999999999888   4666   77999987


Q ss_pred             ccchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcc
Q 027090          151 EDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKD  189 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  189 (228)
                      .+  ..+.+.+....        +|.+.- ++.|+.++++.+|++..
T Consensus       589 te--~~i~~~l~~~~~~~T~iiiaHrls~-i~~aD~Iivl~~G~ive  632 (1321)
T 4f4c_A          589 SE--GIVQQALDKAAKGRTTIIIAHRLST-IRNADLIISCKNGQVVE  632 (1321)
T ss_dssp             TH--HHHHHHHHHHHTTSEEEEECSCTTT-TTTCSEEEEEETTEEEE
T ss_pred             HH--HHHHHHHHHHhCCCEEEEEcccHHH-HHhCCEEEEeeCCeeec
Confidence            65  66666665431        666654 46789899998887654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.81  E-value=1.5e-09  Score=98.03  Aligned_cols=69  Identities=12%  Similarity=0.005  Sum_probs=58.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC------CchHHHHHHhcCCeEEEeeC
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC------PKPLKEILQLCDNRCVLFDN  185 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  185 (228)
                      ..+|+|+++++.+++++..+|   +++|   |++.+|....  ..+.+.++.+.      +|++..+...|+..+++.+|
T Consensus       900 ~~LSGGQkQRVaLArAL~~~P---~LLLLDEPT~gLD~~s~--~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G  974 (986)
T 2iw3_A          900 RGLSGGQKVKLVLAAGTWQRP---HLIVLDEPTNYLDRDSL--GALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDG  974 (986)
T ss_dssp             GGCCHHHHHHHHHHHHHTTCC---SEEEEECGGGTCCHHHH--HHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred             cccCHHHHHHHHHHHHHHhCC---CEEEEECCccCCCHHHH--HHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence            479999999999999998887   4665   8899998777  78888887754      89999998999998888888


Q ss_pred             CCc
Q 027090          186 KTK  188 (228)
Q Consensus       186 ~~~  188 (228)
                      .+.
T Consensus       975 ~Iv  977 (986)
T 2iw3_A          975 RMT  977 (986)
T ss_dssp             BCC
T ss_pred             EEE
Confidence            764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.73  E-value=3e-08  Score=75.13  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..+|+|+|.+|+|||||++.|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999865

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.63  E-value=8e-08  Score=77.30  Aligned_cols=120  Identities=15%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceee---------------------EeEeee-----------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC---------------------EMKTTV-----------   64 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~---------------------~~~~~~-----------   64 (228)
                      +++..++|+|+|||||||+++.|.|...+..+    .+....                     ......           
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g----~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e  202 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF----SVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD  202 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC----EEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence            56789999999999999999999876433222    111000                     000000           


Q ss_pred             -----eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccccc
Q 027090           65 -----LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY  139 (228)
Q Consensus        65 -----~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~  139 (228)
                           ...+..+.++||+|......   ...+++.......  .+|..++++|+..+     +..++.+..+....  ..
T Consensus       203 ~l~~~~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral--~~de~llvLDa~t~-----~~~~~~~~~~~~~~--~i  270 (328)
T 3e70_C          203 AIQHAKARGIDVVLIDTAGRSETNR---NLMDEMKKIARVT--KPNLVIFVGDALAG-----NAIVEQARQFNEAV--KI  270 (328)
T ss_dssp             HHHHHHHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHH--CCSEEEEEEEGGGT-----THHHHHHHHHHHHS--CC
T ss_pred             HHHHHHhccchhhHHhhccchhHHH---HHHHHHHHHHHHh--cCCCCEEEEecHHH-----HHHHHHHHHHHHhc--CC
Confidence                 01123467899999764322   2223433322222  35778889997633     23344444432111  14


Q ss_pred             EEEEEeCCCCCcc
Q 027090          140 MIVVFTGGDDLED  152 (228)
Q Consensus       140 ~llv~~~~D~~~~  152 (228)
                      ..+++||+|....
T Consensus       271 t~iilTKlD~~a~  283 (328)
T 3e70_C          271 DGIILTKLDADAR  283 (328)
T ss_dssp             CEEEEECGGGCSC
T ss_pred             CEEEEeCcCCccc
Confidence            6788999997543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.63  E-value=1.2e-07  Score=78.87  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=67.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh------CCCcccccCCCCCc-----------ceeeEeEee----------------e
Q 027090           18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-----------TKTCEMKTT----------------V   64 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~------g~~~~~~~~~~~~~-----------t~~~~~~~~----------------~   64 (228)
                      ++.+|+++|++|+||||++..|.      |..+..........           ......+..                .
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999987      33321100000000           000000000                0


Q ss_pred             eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (228)
Q Consensus        65 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~  144 (228)
                      ...+..+.++||||....   ......++.......  .+|.+++|+++..+.     ..+..+..+ ... .....+++
T Consensus       179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~--~pd~vlLVvDA~~gq-----~a~~~a~~f-~~~-~~i~gVIl  246 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVI--HPHEVILVIDGTIGQ-----QAYNQALAF-KEA-TPIGSIIV  246 (443)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGGG-----GHHHHHHHH-HHS-CTTEEEEE
T ss_pred             HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhh--cCceEEEEEeCCCch-----hHHHHHHHH-Hhh-CCCeEEEE
Confidence            012356899999997642   333444444433222  568999999987321     122333332 211 12567899


Q ss_pred             eCCCCCcc
Q 027090          145 TGGDDLED  152 (228)
Q Consensus       145 ~~~D~~~~  152 (228)
                      ||+|....
T Consensus       247 TKlD~~~~  254 (443)
T 3dm5_A          247 TKLDGSAK  254 (443)
T ss_dssp             ECCSSCSS
T ss_pred             ECCCCccc
Confidence            99998755

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.62  E-value=1.1e-07  Score=78.90  Aligned_cols=67  Identities=15%  Similarity=-0.003  Sum_probs=51.1

Q ss_pred             CCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCeEEE---
Q 027090          117 FSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVL---  182 (228)
Q Consensus       117 ~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---  182 (228)
                      +|+|+++++.++..++.++.. +++|   |.+++|....  ..+.++++.+.        +|.. ++...|+.++++   
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~-~~LlLDEpt~~LD~~~~--~~l~~~L~~l~~~~~vi~itH~~-~~~~~~d~i~~l~k~  371 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADT-PSVVFDEVDAGIGGAAA--IAVAEQLSRLADTRQVLVVTHLA-QIAARAHHHYKVEKQ  371 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSS-SEEEESSTTTTCCHHHH--HHHHHHHHHHTTTSEEEEECSCH-HHHTTCSEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCC-CEEEEECCCCCCCHHHH--HHHHHHHHHHhCCCEEEEEeCcH-HHHhhcCeEEEEEEe
Confidence            799999999999988766521 3555   7899998877  88888887652        7887 456788888888   


Q ss_pred             -eeCCC
Q 027090          183 -FDNKT  187 (228)
Q Consensus       183 -~~~~~  187 (228)
                       .++.+
T Consensus       372 ~~~G~~  377 (415)
T 4aby_A          372 VEDGRT  377 (415)
T ss_dssp             EETTEE
T ss_pred             ccCCce
Confidence             56654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.62  E-value=3.3e-08  Score=77.17  Aligned_cols=60  Identities=28%  Similarity=0.421  Sum_probs=38.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   84 (228)
                      .+++++|.+|+|||||+|+|+|......+... ..|......    .....+.++||||+.....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~-g~T~~~~~~----~~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQP-GITKGIQWF----SLENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE----ECTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCC-CCccceEEE----EeCCCEEEEECCCcccCcC
Confidence            58999999999999999999998753333211 222222111    1234688999999987654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.61  E-value=1.2e-07  Score=75.59  Aligned_cols=28  Identities=25%  Similarity=0.278  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      .++..++|+|+||||||||++.|.|...
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3578999999999999999999987544

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.59  E-value=6.1e-07  Score=72.28  Aligned_cols=72  Identities=13%  Similarity=0.110  Sum_probs=45.4

Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC----------CCCCHHHHHHHHHHHHHhCcc-
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT----------NRFSQEEETAVHRLPNLFGKN-  135 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~----------~~~s~~~~~~l~~~~~~~~~~-  135 (228)
                      +...+.++||+|           ++.........+++++++++|++++          ..-+..  ..+.++...+..+ 
T Consensus       159 ~~v~l~iwDtaG-----------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~--es~~~~~~i~~~~~  225 (340)
T 4fid_A          159 KDIPFHLIDVGG-----------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLT--ESIAVFKDIMTNEF  225 (340)
T ss_dssp             SSCEEEEEECCS-----------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHH--HHHHHHHHHHHCGG
T ss_pred             eeeeeccccCCC-----------cccccccHHHHhccCCEEEEEEECCccccccccccccchHH--HHHHHHHHHhhhhc
Confidence            456789999999           1333444556678999999999997          222222  2223333333221 


Q ss_pred             -ccccEEEEEeCCCCCc
Q 027090          136 -VFDYMIVVFTGGDDLE  151 (228)
Q Consensus       136 -~~~~~llv~~~~D~~~  151 (228)
                       ...|++|++||+|+..
T Consensus       226 ~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          226 LKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             GTTSEEEEEEECHHHHH
T ss_pred             cCCCeEEEEEECchhhh
Confidence             1238999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.58  E-value=2.1e-07  Score=78.30  Aligned_cols=128  Identities=13%  Similarity=0.142  Sum_probs=68.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccC---CCCCcce--------------eeEeEeee-------------
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASA---GSSGVTK--------------TCEMKTTV-------------   64 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~---~~~~~t~--------------~~~~~~~~-------------   64 (228)
                      ...++..++|+|+||||||||++.|.|...+..+.   ...+...              ...+....             
T Consensus       289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l  368 (503)
T 2yhs_A          289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI  368 (503)
T ss_dssp             CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred             eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence            34567899999999999999999998764332221   0001000              00111000             


Q ss_pred             ---eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh---c-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc
Q 027090           65 ---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM---A-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF  137 (228)
Q Consensus        65 ---~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~  137 (228)
                         ...+..+.++||+|....   ......++......   . ...++.+++++++..+     +..+..+..+..... 
T Consensus       369 ~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG-----q~al~~ak~f~~~~~-  439 (503)
T 2yhs_A          369 QAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-----QNAVSQAKLFHEAVG-  439 (503)
T ss_dssp             HHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT-----HHHHHHHHHHHHHTC-
T ss_pred             HHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc-----HHHHHHHHHHHhhcC-
Confidence               012345789999997643   23333343333221   1 2346788889987622     122233333211111 


Q ss_pred             ccEEEEEeCCCCCcc
Q 027090          138 DYMIVVFTGGDDLED  152 (228)
Q Consensus       138 ~~~llv~~~~D~~~~  152 (228)
                       ...+++||+|....
T Consensus       440 -itgvIlTKLD~tak  453 (503)
T 2yhs_A          440 -LTGITLTKLDGTAK  453 (503)
T ss_dssp             -CSEEEEECGGGCSC
T ss_pred             -CCEEEEEcCCCccc
Confidence             35678999997543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.56  E-value=3.8e-06  Score=67.33  Aligned_cols=131  Identities=12%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC-------CCC-CHHHHHHHHHHHHHhCcc--c
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------NRF-SQEEETAVHRLPNLFGKN--V  136 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~-s~~~~~~l~~~~~~~~~~--~  136 (228)
                      ++..+.++||.|           ++.........+++++++++|++++       +.- .......+.++...+..+  .
T Consensus       165 ~~v~l~iwDtgG-----------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~  233 (327)
T 3ohm_A          165 QSVIFRMVDVGG-----------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ  233 (327)
T ss_dssp             TTEEEEEEEECC-----------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred             eceeeEEEEcCC-----------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence            456789999999           1233344456678999999999764       111 111222334444444322  1


Q ss_pred             cccEEEEEeCCCCCccc--hhhHHHHhhccC--CchHHHHHHh----------cC-CeEEEeeCCCcccccchHHHHHHH
Q 027090          137 FDYMIVVFTGGDDLEDH--EKTLEDFLGHEC--PKPLKEILQL----------CD-NRCVLFDNKTKDEAKGTEQVRQLL  201 (228)
Q Consensus       137 ~~~~llv~~~~D~~~~~--~~~~~~~~~~~~--~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~l~  201 (228)
                      ..|++|++||+|+....  ...+..+...+.  .....+..+.          +. ..+..+.    .+|.+..++++++
T Consensus       234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~----TsA~d~~nV~~vF  309 (327)
T 3ohm_A          234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF----TCATDTENIRFVF  309 (327)
T ss_dssp             TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEE----CCTTCHHHHHHHH
T ss_pred             CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEE----EEeecCHHHHHHH
Confidence            23899999999976430  011222222211  1233333332          22 2222222    4677789999999


Q ss_pred             HHHHHHHHhcC
Q 027090          202 SLVNSVIVQNG  212 (228)
Q Consensus       202 ~~i~~~~~~~~  212 (228)
                      +.+.+.+..++
T Consensus       310 ~~v~~~Il~~~  320 (327)
T 3ohm_A          310 AAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99988776643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.55  E-value=2.2e-08  Score=79.75  Aligned_cols=60  Identities=30%  Similarity=0.363  Sum_probs=34.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC------CcceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   82 (228)
                      ++..++|+|+||||||||+|+|+|...+.++....      ..|......  . ..  ...++||||+...
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~-~~--~g~v~dtpg~~~~  237 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--H-TS--GGLVADTPGFSSL  237 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--E-ET--TEEEESSCSCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--h-cC--CEEEecCCCcccc
Confidence            46799999999999999999999987655542211      222111111  1 11  3579999998763

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.52  E-value=1.9e-07  Score=77.64  Aligned_cols=125  Identities=18%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh------CCCcccccCCC---------------CCcceeeEe----------Eeeee-
Q 027090           18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGS---------------SGVTKTCEM----------KTTVL-   65 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~------g~~~~~~~~~~---------------~~~t~~~~~----------~~~~~-   65 (228)
                      ++..|+++|++|+||||++..|.      |..+.......               .........          ..... 
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            46899999999999999999987      32221000000               000000000          00000 


Q ss_pred             -eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090           66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (228)
Q Consensus        66 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~  144 (228)
                       .....+.++||||..... .+.....++.......  .++.+++|+++...   .+  .+..+..+ ... ..+..+++
T Consensus       176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g---q~--a~~~a~~f-~~~-~~~~gVIl  245 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG---QK--AYDLASRF-HQA-SPIGSVII  245 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG---GG--GHHHHHHH-HHH-CSSEEEEE
T ss_pred             HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc---hH--HHHHHHHH-hcc-cCCcEEEE
Confidence             124568899999965421 1223334544433333  45889999998632   11  12223222 211 12577899


Q ss_pred             eCCCCCcc
Q 027090          145 TGGDDLED  152 (228)
Q Consensus       145 ~~~D~~~~  152 (228)
                      ||+|....
T Consensus       246 TKlD~~a~  253 (433)
T 3kl4_A          246 TKMDGTAK  253 (433)
T ss_dssp             ECGGGCSC
T ss_pred             eccccccc
Confidence            99998654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.51  E-value=7.8e-08  Score=84.76  Aligned_cols=63  Identities=11%  Similarity=0.011  Sum_probs=49.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCcccccc-EEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDY-MIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCV  181 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~-~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  181 (228)
                      ..+|+|+++++.++++++.+|.  | ++|   |++.+|....  .++.++++++.         +|++..+ ..|+.+++
T Consensus       201 ~~LSGGe~QRv~iArAL~~~p~--~~lLlLDEPtsgLD~~~~--~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~ii~  275 (670)
T 3ux8_A          201 GTLSGGEAQRIRLATQIGSRLT--GVLYVLDEPSIGLHQRDN--DRLIATLKSMRDLGNTLIVVEHDEDTM-LAADYLID  275 (670)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCCC--SCEEEEECTTTTCCGGGH--HHHHHHHHHHHHTTCEEEEECCCHHHH-HHCSEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhhCCC--CCEEEEECCccCCCHHHH--HHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEE
Confidence            4699999999999999988762  2 444   7799999877  88887776643         8898864 56888888


Q ss_pred             E
Q 027090          182 L  182 (228)
Q Consensus       182 ~  182 (228)
                      +
T Consensus       276 l  276 (670)
T 3ux8_A          276 I  276 (670)
T ss_dssp             E
T ss_pred             e
Confidence            7

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.50  E-value=2.6e-07  Score=70.18  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...+|+|+|.+|||||||++.|+..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3478999999999999999999865

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.48  E-value=3.5e-07  Score=76.26  Aligned_cols=122  Identities=15%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCC------cccccCCCC----------------------CcceeeE--e--Eeeeee
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRK------AFKASAGSS----------------------GVTKTCE--M--KTTVLK   66 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~------~~~~~~~~~----------------------~~t~~~~--~--~~~~~~   66 (228)
                      ..+|+++|++|+||||+++.|.+..      +.-......                      ..+....  .  ......
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999997632      100000000                      0010000  0  001112


Q ss_pred             CCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc-ccEEEEEe
Q 027090           67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFT  145 (228)
Q Consensus        67 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~-~~~llv~~  145 (228)
                      .+..+.++||||....   ......++.. + .....+|.+++++++..+.     ..+..+..+ .. .. +...+++|
T Consensus       179 ~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~-----~~~~~~~~~-~~-~~~~i~gvVln  246 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ-----QAGIQAKAF-KE-AVGEIGSIIVT  246 (432)
T ss_dssp             SSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG-----GHHHHHHHH-HT-TSCSCEEEEEE
T ss_pred             hCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH-----HHHHHHHHH-hh-cccCCeEEEEe
Confidence            4556899999997642   2222233221 1 1223689999999986332     122333322 21 11 14788999


Q ss_pred             CCCCCcc
Q 027090          146 GGDDLED  152 (228)
Q Consensus       146 ~~D~~~~  152 (228)
                      |+|....
T Consensus       247 K~D~~~~  253 (432)
T 2v3c_C          247 KLDGSAK  253 (432)
T ss_dssp             CSSSCST
T ss_pred             CCCCccc
Confidence            9998643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.43  E-value=3.9e-06  Score=68.20  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      ..++..++|+|+||||||||++.|+|...
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence            45678999999999999999999988644

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.43  E-value=3.5e-07  Score=72.87  Aligned_cols=58  Identities=24%  Similarity=0.259  Sum_probs=36.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC------CcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   81 (228)
                      +..++|+|+||||||||+|+|+ ...+.+|.-..      ..|......  . . .....++||||+..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~-~-~~~g~v~d~pg~~~  228 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--P-F-GKGSFVGDTPGFSK  228 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--E-E-TTTEEEESSCCCSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--E-c-CCCcEEEECcCcCc
Confidence            5689999999999999999999 76655542221      112111111  1 1 12357899999863

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.43  E-value=2.4e-07  Score=73.80  Aligned_cols=61  Identities=30%  Similarity=0.304  Sum_probs=37.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC------CcceeeEeEeeeeeCCcEEEEEeCCCCCCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   83 (228)
                      +..++++|+||||||||+|+|.|...+.+|....      ..|......    .......++|+||+....
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~----~~~~~g~v~q~p~~~~~~  235 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL----KFDFGGYVVDTPGFANLE  235 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE----ECTTSCEEESSCSSTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE----EcCCCCEEEECcCCCccC
Confidence            5689999999999999999999988765552211      122111111    111235789999976543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.42  E-value=5.1e-08  Score=81.92  Aligned_cols=158  Identities=10%  Similarity=0.007  Sum_probs=83.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceeeEe-EeeeeeCCc-EEEEEeCC-CCCCCCCCcHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEM-KTTVLKDGQ-VVNVIDTP-GLFDLSAGSEFVGKE   92 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~-~~~~~~~~~-~~~~iDtp-G~~~~~~~~~~~~~~   92 (228)
                      .++.+++|+|+||||||||+++|+|...+..| .   .+..+... .......+. ....+.++ -..+........ . 
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~---pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~-~-  210 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQ---PLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLT-S-  210 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCC---CEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCB-S-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcccccCCce---eEEEcCCccCCeeeeccchhhcccccccchhhhhcccccc-c-
Confidence            35679999999999999999999998765444 2   01111100 000000011 11001100 000000000000 0 


Q ss_pred             HHHHHhhccCCccEEEEEEeCC-----CCCCHHHHHHHHHHHH--HhCcccccc----EEE---EEeCCCCCccchhhHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVT-----NRFSQEEETAVHRLPN--LFGKNVFDY----MIV---VFTGGDDLEDHEKTLE  158 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~-----~~~s~~~~~~l~~~~~--~~~~~~~~~----~ll---v~~~~D~~~~~~~~~~  158 (228)
                        .  ......+..++..+...     ..+|.++++++.++++  +..++.  -    +++   +++.+|.. .  ..+.
T Consensus       211 --~--~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~--i~~sGLlLDEpPts~LD~~-~--~~l~  281 (460)
T 2npi_A          211 --G--ATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQ--VRRSGCIVDTPSISQLDEN-L--AELH  281 (460)
T ss_dssp             --S--CCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHH--HHHSCEEEECCCGGGSCSS-C--HHHH
T ss_pred             --C--cchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcc--cCcceEEEeCCcccccChh-H--HHHH
Confidence              0  00012233334333332     3689999999999999  887774  2    344   56778877 5  7777


Q ss_pred             HHhhccC------Cch----HH--HHHHhcCC-----eEEEe-eCCCc
Q 027090          159 DFLGHEC------PKP----LK--EILQLCDN-----RCVLF-DNKTK  188 (228)
Q Consensus       159 ~~~~~~~------~~~----~~--~~~~~~~~-----~~~~~-~~~~~  188 (228)
                      +.++...      .|+    +.  .+...|+.     ++++. ++.+.
T Consensus       282 ~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv  329 (460)
T 2npi_A          282 HIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS  329 (460)
T ss_dssp             HHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred             HHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence            7776543      233    33  66677877     77776 77665

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.42  E-value=5.4e-06  Score=67.71  Aligned_cols=67  Identities=10%  Similarity=0.041  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHHHHHHHh------CccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhc
Q 027090          115 NRFSQEEETAVHRLPNLF------GKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLC  176 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~------~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  176 (228)
                      ..+|+|+++++.++.++.      .+|   +++|   |++.+|....  ..+.+.+..+.         +|++.. ...|
T Consensus       278 ~~LSgGe~qr~~la~al~~~~~~~~~p---~~lllDEpt~~LD~~~~--~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~  351 (365)
T 3qf7_A          278 RGLSGGERALISISLAMSLAEVASGRL---DAFFIDEGFSSLDTENK--EKIASVLKELERLNKVIVFITHDREF-SEAF  351 (365)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTTTTC---CEEEEESCCTTSCHHHH--HHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred             hhCCHHHHHHHHHHHHHHhhhcccCCC---CEEEEeCCCccCCHHHH--HHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence            479999999999988886      455   3555   8899998877  78777777643         788876 6778


Q ss_pred             CCeEEEeeCCC
Q 027090          177 DNRCVLFDNKT  187 (228)
Q Consensus       177 ~~~~~~~~~~~  187 (228)
                      +.++++.+|.+
T Consensus       352 d~~~~l~~G~i  362 (365)
T 3qf7_A          352 DRKLRITGGVV  362 (365)
T ss_dssp             SCEEEEETTEE
T ss_pred             CEEEEEECCEE
Confidence            88888877754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.38  E-value=1.1e-07  Score=83.71  Aligned_cols=71  Identities=18%  Similarity=0.061  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++++++.++....++|   |++.+|....  ..+.+.++++.         +|++..+ ..|++++++
T Consensus       542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~--~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~l  618 (670)
T 3ux8_A          542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDI--ARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDL  618 (670)
T ss_dssp             GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHH--HHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEEe
Confidence            4799999999999999987652112444   7799998776  77777666542         8999865 678888777


Q ss_pred             ------eeCCCc
Q 027090          183 ------FDNKTK  188 (228)
Q Consensus       183 ------~~~~~~  188 (228)
                            .+|.+.
T Consensus       619 ~~~~g~~~G~i~  630 (670)
T 3ux8_A          619 GPEGGDRGGQIV  630 (670)
T ss_dssp             ESSSGGGCCEEE
T ss_pred             cCCcCCCCCEEE
Confidence                  566654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.38  E-value=1.5e-06  Score=69.28  Aligned_cols=127  Identities=16%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc------CCCCCcc-----------eeeEeEee---------------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVT-----------KTCEMKTT---------------   63 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~------~~~~~~t-----------~~~~~~~~---------------   63 (228)
                      ..++..++|+|++|+||||++..|.+......+      .......           ........               
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~  180 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA  180 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence            345679999999999999999998765321111      0000000           00000000               


Q ss_pred             -eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccc
Q 027090           64 -VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD  138 (228)
Q Consensus        64 -~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~  138 (228)
                       ....+..+.++||||...   ......+++.......    ...++.+++++++.   +.  +..+..+..+....  .
T Consensus       181 ~a~~~~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~~~~~~--~  250 (306)
T 1vma_A          181 HALARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKIFKEAV--N  250 (306)
T ss_dssp             HHHHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHHHHHHS--C
T ss_pred             HHHhcCCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHHHHhcC--C
Confidence             012344589999999532   2333334443332221    23578889999886   22  22233333322111  1


Q ss_pred             cEEEEEeCCCCCcc
Q 027090          139 YMIVVFTGGDDLED  152 (228)
Q Consensus       139 ~~llv~~~~D~~~~  152 (228)
                      ..-+++||+|....
T Consensus       251 i~gvVlTk~D~~~~  264 (306)
T 1vma_A          251 VTGIILTKLDGTAK  264 (306)
T ss_dssp             CCEEEEECGGGCSC
T ss_pred             CCEEEEeCCCCccc
Confidence            35568899997654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.36  E-value=1.4e-06  Score=72.69  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=57.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC-----------------CcccccCCCCCcceeeEeEee----eeeC--CcEEEE
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTKTCEMKTT----VLKD--GQVVNV   73 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~-----------------~~~~~~~~~~~~t~~~~~~~~----~~~~--~~~~~~   73 (228)
                      .+-..|+|+|+.++|||||+|.|+|.                 ..+..+......|.-......    ....  ...+.+
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl  144 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence            34568999999999999999999864                 111111111222222211100    0011  235889


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 027090           74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL  131 (228)
Q Consensus        74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~  131 (228)
                      +||||+.+.... ......++....   --.+.+++-.  ...+...+...|+++...
T Consensus       145 lDTeG~~~~~~~-~~~d~~ifal~~---lLSs~~IyN~--~~~i~~~~l~~L~~~~e~  196 (447)
T 3q5d_A          145 MDTQGTFDSQST-LRDSATVFALST---MISSIQVYNL--SQNVQEDDLQHLQLFTEY  196 (447)
T ss_dssp             EEEECCCSSHHH-HHHHHHHHHHHH---HHCSEEEEEE--SSSCCHHHHHHHHHHHHH
T ss_pred             EcCCcccccccc-hhhhHHHHHHHH---HHhhHHHHhh--cccccHHHHHHHHHHHHH
Confidence            999999875321 111111221111   0124444444  347888888777766554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.35  E-value=3.3e-07  Score=74.34  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc-cccc
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS   48 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~   48 (228)
                      ++..++|+|+||||||||+|+|+|... +.+|
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G  245 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTN  245 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccccccccC
Confidence            356899999999999999999999876 5554

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.28  E-value=3.5e-07  Score=65.75  Aligned_cols=31  Identities=23%  Similarity=0.213  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~   48 (228)
                      +++..++|+|+||||||||++.|+|.. +..|
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G   61 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG   61 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence            566899999999999999999999987 5555

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.25  E-value=2.9e-06  Score=67.30  Aligned_cols=124  Identities=13%  Similarity=0.100  Sum_probs=65.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC------CcccccCCCC-Ccce----------eeEeE--------------eeee--
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR------KAFKASAGSS-GVTK----------TCEMK--------------TTVL--   65 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~------~~~~~~~~~~-~~t~----------~~~~~--------------~~~~--   65 (228)
                      +..++++|++|+||||++..|.+.      .+.-.+.... +...          .....              ....  
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            679999999999999999998743      2211111100 0000          00000              0000  


Q ss_pred             eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEe
Q 027090           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT  145 (228)
Q Consensus        66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~  145 (228)
                      ..+..+.++||||.... ...+....++......  ..+|.+++++++...     ...++.+..+ .... +...+++|
T Consensus       178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~~--~~~d~vllVvda~~g-----~~~~~~~~~~-~~~~-~i~gvVln  247 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEA--IKPDEVTLVIDASIG-----QKAYDLASKF-NQAS-KIGTIIIT  247 (297)
T ss_dssp             HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG-----GGHHHHHHHH-HHTC-TTEEEEEE
T ss_pred             hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHHH--hcCCEEEEEeeCCch-----HHHHHHHHHH-HhhC-CCCEEEEe
Confidence            14456899999997651 1222233333222111  156889999998621     2223333332 2111 13777999


Q ss_pred             CCCCCcc
Q 027090          146 GGDDLED  152 (228)
Q Consensus       146 ~~D~~~~  152 (228)
                      |+|....
T Consensus       248 k~D~~~~  254 (297)
T 1j8m_F          248 KMDGTAK  254 (297)
T ss_dssp             CGGGCTT
T ss_pred             CCCCCcc
Confidence            9997644

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.24  E-value=1.2e-06  Score=69.41  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      .++.+++|+|++|+||||++..|.+..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999987543

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.24  E-value=4.7e-07  Score=68.00  Aligned_cols=29  Identities=34%  Similarity=0.407  Sum_probs=24.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      +-.++..++|+|+||||||||+++|+|..
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34567899999999999999999999875

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.20  E-value=1.7e-06  Score=78.10  Aligned_cols=65  Identities=15%  Similarity=0.090  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|++|++.+++++..++....++|   |++.+|....  ..+.+.++++.         +|++..+ ..|++++++
T Consensus       804 ~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~--~~L~~lL~~L~~~G~TVIvI~HdL~~i-~~ADrIivL  880 (916)
T 3pih_A          804 TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDV--RKLVEVLHRLVDRGNTVIVIEHNLDVI-KNADHIIDL  880 (916)
T ss_dssp             TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHH--HHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEe
Confidence            4799999999999999976542112444   6799998876  77777766542         8898765 568888777

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.20  E-value=2.7e-07  Score=69.48  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~   49 (228)
                      ++..++|+|+||||||||+++|+|. .+.+|.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~   51 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ   51 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence            4578999999999999999999998 766653

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.18  E-value=5.9e-07  Score=67.04  Aligned_cols=26  Identities=38%  Similarity=0.586  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ++..++|+|+||||||||++.|+|..
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45789999999999999999998853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.14  E-value=1.1e-06  Score=66.71  Aligned_cols=29  Identities=17%  Similarity=0.237  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      .+++..++|+|+||||||||+++|+|...
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            35678999999999999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.13  E-value=9.6e-07  Score=66.93  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=23.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      .-+++..++|+|+||||||||++.|+|..
T Consensus        19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34567899999999999999999999865

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.13  E-value=1.1e-06  Score=64.47  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      +++|+|+||||||||++.|+|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.12  E-value=1.3e-06  Score=65.24  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      +++..++|+|+||||||||++.|.+..
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            356799999999999999999999863

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.06  E-value=1.9e-06  Score=63.17  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ++..++|+|++|||||||++.|.+..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45689999999999999999998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.05  E-value=2.8e-06  Score=62.66  Aligned_cols=26  Identities=27%  Similarity=0.477  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +++..++|+|+||||||||++.|.+.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            45679999999999999999999986

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.05  E-value=2.1e-06  Score=64.46  Aligned_cols=29  Identities=31%  Similarity=0.483  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      .+++..++|+|+||||||||++.|.|...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45678999999999999999999998754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.05  E-value=2.2e-06  Score=62.36  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +++..++|+|+||||||||++++.+
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHcc
Confidence            3567999999999999999998764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.04  E-value=3.4e-05  Score=61.79  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..++..++|+|++|+||||++..|.+.
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            456689999999999999999988654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.01  E-value=2.5e-06  Score=64.00  Aligned_cols=28  Identities=14%  Similarity=0.210  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ++++..|+|+|++|||||||++.|.|..
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3566899999999999999999998863

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.01  E-value=2.6e-06  Score=67.63  Aligned_cols=135  Identities=9%  Similarity=0.028  Sum_probs=70.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      -+++.+++|+|+||||||||+++|+|..   .|.............. ......++.+.+..        .... .++..
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~-~ti~~~ni~~~~~~--------~~~~-~~~i~  189 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWL-ASLADTRAALVDDA--------THAC-WRYFD  189 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGG-GGGTTCSCEEEEEE--------CHHH-HHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCcccccc-ccHHHHhhccCccc--------cHHH-HHHHH
Confidence            4567899999999999999999999753   1100000000000000 00111122222110        0111 22222


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .+  ...+.+        ...+|+|++++   +++++.+|   +++| ++.+|....  ..+.. +    +|.+.. ...
T Consensus       190 ~~--L~~gld--------g~~LSgGqkQR---ARAll~~p---~iLl-Ts~LD~~~~--~~i~~-l----tH~~~~-~~~  244 (305)
T 2v9p_A          190 TY--LRNALD--------GYPVSIDRKHK---AAVQIKAP---PLLV-TSNIDVQAE--DRYLY-L----HSRVQT-FRF  244 (305)
T ss_dssp             HT--TTGGGG--------TCCEECCCSSC---CCCEECCC---CEEE-EESSCSTTC--GGGGG-G----TTTEEE-EEC
T ss_pred             HH--hHccCC--------ccCcCHHHHHH---HHHHhCCC---CEEE-ECCCCHHHH--HHHHH-H----hCCHHH-HHh
Confidence            21  112233        34799999987   67776666   5777 999998876  65542 1    444432 456


Q ss_pred             cCCeEEEeeCCCcc
Q 027090          176 CDNRCVLFDNKTKD  189 (228)
Q Consensus       176 ~~~~~~~~~~~~~~  189 (228)
                      |+.+ ++.+|.+..
T Consensus       245 aD~i-vl~~G~iv~  257 (305)
T 2v9p_A          245 EQPC-TDESGEQPF  257 (305)
T ss_dssp             CCCC-CCC---CCC
T ss_pred             CCEE-EEeCCEEEE
Confidence            8888 777776653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.00  E-value=5.6e-05  Score=63.02  Aligned_cols=124  Identities=18%  Similarity=0.121  Sum_probs=65.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh-------CCCcccccCCCC-Cccee----------eEeEe--------------ee
Q 027090           17 NGERTVVLLGRTGNGKSATGNSIL-------GRKAFKASAGSS-GVTKT----------CEMKT--------------TV   64 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~-------g~~~~~~~~~~~-~~t~~----------~~~~~--------------~~   64 (228)
                      .+..+|+++|++|+||||+...|.       |..+........ +....          .....              ..
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            445789999999999999999887       544321111100 00000          00000              00


Q ss_pred             --eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE
Q 027090           65 --LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV  142 (228)
Q Consensus        65 --~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll  142 (228)
                        ...+..+.++||||....   ......++.....  .-.++.+++|+++.....     .+..+..+ .... ...-+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~~-----~~~~~~~f-~~~l-~i~gv  245 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQD-----AANTAKAF-NEAL-PLTGV  245 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCTT-----HHHHHHHH-HHHS-CCCCE
T ss_pred             HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhHH-----HHHHHHHH-hccC-CCeEE
Confidence              013556899999996542   2223233332221  225788899999873322     22333322 2111 12446


Q ss_pred             EEeCCCCCcc
Q 027090          143 VFTGGDDLED  152 (228)
Q Consensus       143 v~~~~D~~~~  152 (228)
                      ++||+|....
T Consensus       246 VlnK~D~~~~  255 (433)
T 2xxa_A          246 VLTKVDGDAR  255 (433)
T ss_dssp             EEECTTSSSC
T ss_pred             EEecCCCCcc
Confidence            8999998644

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.99  E-value=3.3e-06  Score=65.74  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=26.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAF   45 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~   45 (228)
                      ..++..++|+|+||||||||+++|+|...+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            456789999999999999999999987543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.97  E-value=2.9e-05  Score=64.49  Aligned_cols=123  Identities=16%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccc------cCCCCCc-ce----------eeEeEe--------------eee-
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGSSGV-TK----------TCEMKT--------------TVL-   65 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~------~~~~~~~-t~----------~~~~~~--------------~~~-   65 (228)
                      ++..++++|++|+||||++..|.+......      +...... ..          ......              ... 
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~  176 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999875432110      0000000 00          000000              000 


Q ss_pred             -eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090           66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (228)
Q Consensus        66 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~  144 (228)
                       ..+..+.++||||....   ......++.......  .++.+++|+++...     +..+..+..+ ... ....-+++
T Consensus       177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg-----q~av~~a~~f-~~~-l~i~GVIl  244 (425)
T 2ffh_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG-----QEALSVARAF-DEK-VGVTGLVL  244 (425)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT-----THHHHHHHHH-HHH-TCCCEEEE
T ss_pred             HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch-----HHHHHHHHHH-Hhc-CCceEEEE
Confidence             13456899999996543   233334433332222  56888999998622     2223333332 211 12356688


Q ss_pred             eCCCCCcc
Q 027090          145 TGGDDLED  152 (228)
Q Consensus       145 ~~~D~~~~  152 (228)
                      ||+|....
T Consensus       245 TKlD~~~~  252 (425)
T 2ffh_A          245 TKLDGDAR  252 (425)
T ss_dssp             ESGGGCSS
T ss_pred             eCcCCccc
Confidence            99997544

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.96  E-value=0.00012  Score=61.05  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHh-------CC----------CcccccCCCCCcceeeEeEe----eeeeCC--cEEE
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSIL-------GR----------KAFKASAGSSGVTKTCEMKT----TVLKDG--QVVN   72 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~-------g~----------~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~   72 (228)
                      ..+-..|+|+|+.++|||+|+|.|+       |.          ..+..+.....+|.-...-.    .....+  ..+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            3455789999999999999999775       21          12222223333443333211    111122  3589


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHH-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 027090           73 VIDTPGLFDLSAGSEFVGKEIVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL  131 (228)
Q Consensus        73 ~iDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~  131 (228)
                      ++||.|+++.....+.- ..++. .+-.+    ..+||-..  ..+...+.+.|+++..+
T Consensus       144 llDTEG~~d~~~~~~~d-~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~tel  196 (457)
T 4ido_A          144 LMDTQGTFDSQSTLRDS-ATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTEY  196 (457)
T ss_dssp             EEEECCBTCTTCCHHHH-HHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHHH
T ss_pred             EEeccCCCCcccCcccc-HHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHHH
Confidence            99999998876543221 22222 11122    45555544  46778887777766554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.92  E-value=3.9e-06  Score=62.11  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      .+++|+|+||+|||||++.|+|...
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            5799999999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.91  E-value=6e-06  Score=61.37  Aligned_cols=28  Identities=36%  Similarity=0.684  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      .-+++.++|+|++|||||||++.|.+..
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3466799999999999999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.90  E-value=5.9e-06  Score=66.01  Aligned_cols=29  Identities=21%  Similarity=0.130  Sum_probs=25.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      .+++..|+|+|+||||||||++.|.|...
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            46678999999999999999999998754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.89  E-value=3.6e-06  Score=64.23  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=18.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHh-CCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSIL-GRK   43 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~-g~~   43 (228)
                      -+++..++|+|+||||||||++.|. +..
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3556799999999999999999999 864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.88  E-value=7.3e-06  Score=63.11  Aligned_cols=29  Identities=28%  Similarity=0.422  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh---CCCccc
Q 027090           18 GERTVVLLGRTGNGKSATGNSIL---GRKAFK   46 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~---g~~~~~   46 (228)
                      ++.+|+|+|+||||||||++.|.   |...+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~   57 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS   57 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            45799999999999999999999   876543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.88  E-value=6.9e-06  Score=61.64  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      +++..++|+|++|||||||++.|.+..
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            456799999999999999999998765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.88  E-value=7.2e-06  Score=66.87  Aligned_cols=28  Identities=32%  Similarity=0.562  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAF   45 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~   45 (228)
                      ++..++|+|+||||||||+++|+|...+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            5679999999999999999999998664

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.86  E-value=7.5e-06  Score=60.98  Aligned_cols=27  Identities=26%  Similarity=0.554  Sum_probs=22.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..++..|+|+|++||||||+++.|.+.
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            445689999999999999999999764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.85  E-value=8.1e-06  Score=62.86  Aligned_cols=29  Identities=24%  Similarity=0.179  Sum_probs=23.5

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..-+++..|+|+|++|||||||++.|.+.
T Consensus        20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           20 FQSMRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             ---CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34456689999999999999999999874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.85  E-value=6.8e-06  Score=66.18  Aligned_cols=28  Identities=29%  Similarity=0.317  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAF   45 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~   45 (228)
                      ++..++|+|+||||||||+++|+|...+
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            4568999999999999999999998654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.85  E-value=5.1e-06  Score=66.07  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      ..++..++|+|+||||||||++.|+|...
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999988644

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.84  E-value=1.1e-05  Score=58.60  Aligned_cols=28  Identities=29%  Similarity=0.517  Sum_probs=23.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +..++..|+|+|++||||||+.+.|.+.
T Consensus         4 ~~~~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            4 TNHDHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             CCTTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            3455689999999999999999998753

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.83  E-value=0.00015  Score=58.96  Aligned_cols=126  Identities=16%  Similarity=0.187  Sum_probs=67.4

Q ss_pred             eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC----------CCCHHHHHHHHHHHHHhCcc
Q 027090           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN----------RFSQEEETAVHRLPNLFGKN  135 (228)
Q Consensus        66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~----------~~s~~~~~~l~~~~~~~~~~  135 (228)
                      .+...+.++||+|-           +..........++++++++|+++++          .-+..+  .+.++...+..+
T Consensus       198 ~~~~~l~i~Dt~Gq-----------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~e--s~~~~~~i~~~~  264 (362)
T 1zcb_A          198 IKNVPFKMVDVGGQ-----------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTE--SLNIFETIVNNR  264 (362)
T ss_dssp             ETTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHH--HHHHHHHHHTCG
T ss_pred             eCCeEEEEEeccch-----------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHH--HHHHHHHHhcch
Confidence            35677999999992           2223334456678999999999984          122222  223333333221


Q ss_pred             --ccccEEEEEeCCCCCccchh----hHHHHhhccC-C-chHHHHHHhc--------C----CeEEEeeCCCcccccchH
Q 027090          136 --VFDYMIVVFTGGDDLEDHEK----TLEDFLGHEC-P-KPLKEILQLC--------D----NRCVLFDNKTKDEAKGTE  195 (228)
Q Consensus       136 --~~~~~llv~~~~D~~~~~~~----~~~~~~~~~~-~-~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~  195 (228)
                        ...|++|++||.|+...  +    .+..+...+. . ....+..+.+        .    ..+..    ...+|.++.
T Consensus       265 ~~~~~piILv~NK~DL~~~--ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~----~~tSA~d~~  338 (362)
T 1zcb_A          265 VFSNVSIILFLNKTDLLEE--KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYH----HFTTAINTE  338 (362)
T ss_dssp             GGTTSEEEEEEECHHHHHH--HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEE----EECCTTCHH
T ss_pred             hhCCCCEEEEEEChhhhhh--hccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEE----EEEecCCch
Confidence              12389999999998632  1    1111111110 0 1122222221        1    11222    234778889


Q ss_pred             HHHHHHHHHHHHHHh
Q 027090          196 QVRQLLSLVNSVIVQ  210 (228)
Q Consensus       196 ~~~~l~~~i~~~~~~  210 (228)
                      ++.++++.+.+.+..
T Consensus       339 nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          339 NIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999988776654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.83  E-value=7e-06  Score=62.22  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      -+++..++|+|+||||||||++.|+|..
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4566899999999999999999998843

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.82  E-value=1e-05  Score=60.29  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ++..++|+|++||||||+++.|.+..
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45799999999999999999998875

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.80  E-value=1.3e-05  Score=61.14  Aligned_cols=29  Identities=24%  Similarity=0.264  Sum_probs=25.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...+++..|+|.|++||||||+++.|.+.
T Consensus        15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34466789999999999999999999875

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.77  E-value=1.1e-05  Score=59.40  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..++|+|+||||||||++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5799999999999999999975

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.76  E-value=1.5e-05  Score=61.64  Aligned_cols=31  Identities=13%  Similarity=0.256  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh---CCCcccc
Q 027090           17 NGERTVVLLGRTGNGKSATGNSIL---GRKAFKA   47 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~---g~~~~~~   47 (228)
                      .++.+|+|+|++||||||+.+.|.   |...+.+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~   58 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS   58 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence            456799999999999999999999   7655443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.76  E-value=2.1e-05  Score=70.50  Aligned_cols=65  Identities=14%  Similarity=0.032  Sum_probs=48.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++..+..++....++|   |++++|....  ..+.+.++.+.         +|++..+ ..|++++++
T Consensus       729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~--~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L  805 (842)
T 2vf7_A          729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADV--ERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDI  805 (842)
T ss_dssp             GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHH--HHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence            4799999999999999877520002444   7799998776  77777665442         8999888 778877777

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.75  E-value=1.5e-05  Score=63.47  Aligned_cols=28  Identities=18%  Similarity=0.166  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ..++..|+|+|++|||||||++.|.|..
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4566899999999999999999998853

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.73  E-value=1.5e-05  Score=64.73  Aligned_cols=27  Identities=33%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      ++..++|+|+||||||||+++|+|...
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            446999999999999999999988654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.72  E-value=1.2e-05  Score=67.76  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~   48 (228)
                      ..++|+|+||||||||+++|+|...+.+|
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   58 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT   58 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            69999999999999999999987655444

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.72  E-value=1.2e-05  Score=65.05  Aligned_cols=32  Identities=16%  Similarity=0.141  Sum_probs=27.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCccc
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK   46 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~   46 (228)
                      +-.++.+++|+|+||+|||||+++|+|...+.
T Consensus        67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            44567899999999999999999999986543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.71  E-value=0.00031  Score=56.92  Aligned_cols=129  Identities=14%  Similarity=0.129  Sum_probs=70.3

Q ss_pred             eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCC--------HHHHHHHHHHHHHhCcc--
Q 027090           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS--------QEEETAVHRLPNLFGKN--  135 (228)
Q Consensus        66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s--------~~~~~~l~~~~~~~~~~--  135 (228)
                      .+...+.++||+|-.           .+........++++++++|+++++.-+        ......+.++...+..+  
T Consensus       190 ~~~~~l~iwDt~GQe-----------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          190 FKDLHFKMFDVGGQR-----------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             ETTEEEEEEEECCSG-----------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             eCCeeEEEEeCCCch-----------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            356779999999922           222334456678999999999984211        11223334444433321  


Q ss_pred             ccccEEEEEeCCCCCccchh----hHHHHhhccC-CchHHHHHHhc------------CCeEEEeeCCCcccccchHHHH
Q 027090          136 VFDYMIVVFTGGDDLEDHEK----TLEDFLGHEC-PKPLKEILQLC------------DNRCVLFDNKTKDEAKGTEQVR  198 (228)
Q Consensus       136 ~~~~~llv~~~~D~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  198 (228)
                      ...|++|++||.|+...  +    .+..+...+. .....+..+.+            ...+..+    ..+|.++.++.
T Consensus       259 ~~~piiLv~NK~DL~~~--ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----etSA~~~~nV~  332 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEE--KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQ  332 (353)
T ss_dssp             TTSEEEEEEECHHHHHH--HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHH
T ss_pred             cCCcEEEEEECcCchhh--hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EEECcCchhHH
Confidence            12389999999998532  1    0111100000 01112221111            1222222    34778889999


Q ss_pred             HHHHHHHHHHHhc
Q 027090          199 QLLSLVNSVIVQN  211 (228)
Q Consensus       199 ~l~~~i~~~~~~~  211 (228)
                      ++++.+.+.+...
T Consensus       333 ~vF~~v~~~i~~~  345 (353)
T 1cip_A          333 FVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888777654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.70  E-value=1.4e-05  Score=66.34  Aligned_cols=28  Identities=29%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      .++..++|+|+||||||||+++|+|...
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            4567899999999999999999998654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.69  E-value=1.8e-05  Score=64.74  Aligned_cols=29  Identities=28%  Similarity=0.341  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      ..++..++|+|+||||||||+++|++...
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            35677999999999999999999998654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.69  E-value=1.8e-05  Score=67.42  Aligned_cols=28  Identities=25%  Similarity=0.301  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAF   45 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~   45 (228)
                      .+..++|+|+||||||||+++|+|...+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            4567999999999999999999987653

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.69  E-value=2.2e-05  Score=58.46  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      .++..|+|+|++||||||+.+.|.+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.69  E-value=1.4e-05  Score=65.25  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=27.0

Q ss_pred             CCCCC--CeEEEEEcCCCCCHHHHHHHHhCCCccc
Q 027090           14 SPSNG--ERTVVLLGRTGNGKSATGNSILGRKAFK   46 (228)
Q Consensus        14 ~~~~~--~~~i~l~G~~g~GKSTlin~l~g~~~~~   46 (228)
                      ..-.+  +.+++|+|+||||||||+++|.|...+.
T Consensus       163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            33444  6899999999999999999999976543

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.68  E-value=1.5e-05  Score=72.29  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l   39 (228)
                      .++..++|+||||+|||||++++
T Consensus       660 ~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          660 DKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TTBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHH
Confidence            45679999999999999999999

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.62  E-value=2.3e-05  Score=56.66  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +..|+|+|++||||||+.+.|.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.60  E-value=2.1e-05  Score=57.43  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      ++..++|+|++|+|||||+++|.+...
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999987653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.60  E-value=2.5e-05  Score=65.20  Aligned_cols=32  Identities=16%  Similarity=0.083  Sum_probs=27.8

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAF   45 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~   45 (228)
                      .+-.++.+++|+|+||||||||+++|+|...+
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            45567789999999999999999999997653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.55  E-value=4.1e-05  Score=55.88  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..+|+|+||||||||+.+|.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            8899999999999999999754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.55  E-value=3e-05  Score=54.96  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      ++..++|+|++|+|||||++++.+...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999997643

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.54  E-value=1.6e-05  Score=57.77  Aligned_cols=25  Identities=12%  Similarity=0.222  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      ..++|+|++|||||||++.|.+...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4799999999999999999988754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.52  E-value=5.8e-05  Score=60.36  Aligned_cols=27  Identities=19%  Similarity=0.155  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      .....|+|+|++|||||||++.|.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            445789999999999999999997653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.51  E-value=5.7e-05  Score=56.24  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...+..|+|+|++|||||||++.|.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345679999999999999999999864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.50  E-value=5.5e-05  Score=56.42  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+..|+|+|++||||||+.+.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.49  E-value=9.6e-05  Score=59.13  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ...++|+|++|||||||+|.|++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4589999999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.49  E-value=9e-05  Score=55.29  Aligned_cols=29  Identities=14%  Similarity=0.211  Sum_probs=24.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...+++..|+|+|++||||||+.+.|.+.
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34455689999999999999999999876

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.43  E-value=7.6e-05  Score=56.39  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.43  E-value=0.0001  Score=52.16  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ...+|+|+||+||||++.+|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999985

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.42  E-value=6.3e-05  Score=56.87  Aligned_cols=27  Identities=19%  Similarity=0.290  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      +++..++|+|+||+|||||++.|++..
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998543

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.40  E-value=7.5e-05  Score=59.00  Aligned_cols=30  Identities=17%  Similarity=0.170  Sum_probs=25.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      .-.++..++|+|+||+|||||++.|++...
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345678999999999999999999987654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.40  E-value=0.0001  Score=54.71  Aligned_cols=27  Identities=30%  Similarity=0.486  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..++.+|+|+|++||||||+.+.|...
T Consensus        22 ~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           22 SNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            345679999999999999999999743

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.40  E-value=9.8e-05  Score=55.00  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999987

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.36  E-value=8.3e-05  Score=55.27  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999986

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.33  E-value=9.4e-06  Score=61.75  Aligned_cols=29  Identities=24%  Similarity=0.228  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~   48 (228)
                      ..++|+|+||||||||+++|+|...+.+|
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G   56 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT   56 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence            35789999999999999999987664443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.33  E-value=0.00013  Score=54.20  Aligned_cols=24  Identities=33%  Similarity=0.664  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...|+|+|++||||||+.+.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.32  E-value=0.00015  Score=57.23  Aligned_cols=28  Identities=25%  Similarity=0.287  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ..++..|+|+|++|||||||.+.|.+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4456899999999999999999997654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.30  E-value=0.00013  Score=53.67  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      -|+|+||+|||||||++.|...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.30  E-value=0.00012  Score=53.29  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..++|+|++|||||||++.|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            58999999999999999999875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.30  E-value=0.0014  Score=48.37  Aligned_cols=70  Identities=6%  Similarity=-0.014  Sum_probs=42.2

Q ss_pred             CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCC
Q 027090           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (228)
Q Consensus        68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~  147 (228)
                      ...+.++|+|+...         ......+..    +|.+++++..+ ..+......++.+...-......++.+|+|++
T Consensus        75 ~yD~viiD~~~~~~---------~~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS---------VITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSS---------HHHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCC---------HHHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            45689999998553         223333333    38899999887 44444455566665432111112457899999


Q ss_pred             CCCc
Q 027090          148 DDLE  151 (228)
Q Consensus       148 D~~~  151 (228)
                      |...
T Consensus       141 ~~~~  144 (206)
T 4dzz_A          141 IEMA  144 (206)
T ss_dssp             CTTE
T ss_pred             CCCc
Confidence            9654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.27  E-value=0.00011  Score=57.51  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Q 027090           22 VVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ++|+|+||+|||||+++|.+..
T Consensus        47 vlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHc
Confidence            9999999999999999998753

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.26  E-value=0.00082  Score=54.49  Aligned_cols=71  Identities=13%  Similarity=0.126  Sum_probs=42.6

Q ss_pred             CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC----------CCCCHHHHHHHHHHHHHhCcc--
Q 027090           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT----------NRFSQEEETAVHRLPNLFGKN--  135 (228)
Q Consensus        68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~----------~~~s~~~~~~l~~~~~~~~~~--  135 (228)
                      ...+.++||+|-..           +.......+++++++++|++++          +.-+..+  ...++......+  
T Consensus       182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~--~~~~~~~i~~~~~~  248 (354)
T 2xtz_A          182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME--TKELFDWVLKQPCF  248 (354)
T ss_dssp             --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHH--HHHHHHHHHTCGGG
T ss_pred             ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHH--HHHHHHHHHhcccc
Confidence            35689999999322           2233345567899999999986          2323332  223333333211  


Q ss_pred             ccccEEEEEeCCCCCc
Q 027090          136 VFDYMIVVFTGGDDLE  151 (228)
Q Consensus       136 ~~~~~llv~~~~D~~~  151 (228)
                      ...|++|++||+|+..
T Consensus       249 ~~~piiLvgNK~DL~~  264 (354)
T 2xtz_A          249 EKTSFMLFLNKFDIFE  264 (354)
T ss_dssp             SSCEEEEEEECHHHHH
T ss_pred             CCCeEEEEEECcchhh
Confidence            1238999999999753

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.26  E-value=0.00022  Score=52.14  Aligned_cols=28  Identities=18%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +..++.+|+|+|.+||||||+.+.|...
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3445679999999999999999999654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.26  E-value=0.00022  Score=53.21  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +++...+..|+|.|.+||||||+.+.|..
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            4 TDDKKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             TCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            34445568999999999999999999964

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.24  E-value=0.00017  Score=54.09  Aligned_cols=26  Identities=12%  Similarity=-0.054  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      -+++..++|+|++|+|||||+..|++
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567999999999999999999987

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.24  E-value=0.00018  Score=52.32  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ++..|+|+|.+||||||+.+.|.+.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.22  E-value=0.00017  Score=59.04  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      -+++..++|+|++|+|||||+++|.+.
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            345579999999999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.22  E-value=0.00015  Score=55.30  Aligned_cols=27  Identities=11%  Similarity=0.161  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      -+++..++|+|++|+|||||+..|++.
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            345679999999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.21  E-value=0.00031  Score=52.07  Aligned_cols=30  Identities=20%  Similarity=0.441  Sum_probs=24.8

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..+......|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A            8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CCSCTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            445556667999999999999999999863

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.19  E-value=0.00033  Score=51.22  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..++..|+|+|.+||||||+.+.|...
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            345689999999999999999999764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.18  E-value=0.0003  Score=52.14  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=23.3

Q ss_pred             ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+......+..|+|+|++||||||+.+.|..
T Consensus        12 ~~~~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           12 SGLVPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             ----CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445556667999999999999999999863

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.17  E-value=0.00025  Score=51.77  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh
Q 027090           18 GERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      .+..|+|+|++||||||+.+.|.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999996

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.14  E-value=0.00019  Score=55.28  Aligned_cols=21  Identities=33%  Similarity=0.654  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 027090           22 VVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ++|+|++|+|||||+++|.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.13  E-value=0.00027  Score=50.79  Aligned_cols=22  Identities=18%  Similarity=0.131  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..|+|.|++||||||+.+.|..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999964

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.12  E-value=0.00022  Score=63.85  Aligned_cols=27  Identities=19%  Similarity=0.135  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      +++..++|+|+||+|||||+++|.|..
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            466799999999999999999998753

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.12  E-value=0.00034  Score=52.17  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ...+|+|+||+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            578999999999999999873

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.12  E-value=0.0003  Score=51.41  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..|+|.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.11  E-value=0.00022  Score=57.38  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ..++|+|++|+|||||+++|.+..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            479999999999999999998764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.09  E-value=0.00021  Score=55.95  Aligned_cols=27  Identities=19%  Similarity=0.181  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      -+++..++|+|+||+|||||+..|++.
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.09  E-value=0.00035  Score=50.53  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.08  E-value=0.00032  Score=50.35  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l   39 (228)
                      ..|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.08  E-value=0.0049  Score=50.75  Aligned_cols=73  Identities=12%  Similarity=0.126  Sum_probs=45.6

Q ss_pred             eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCC----------CCCHHHHHHHHHHHHHhCcc
Q 027090           66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN----------RFSQEEETAVHRLPNLFGKN  135 (228)
Q Consensus        66 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~----------~~s~~~~~~l~~~~~~~~~~  135 (228)
                      ..+..+.++||+|-.           .+.......+++++++++|+++++          .-+..+.  ..++......+
T Consensus       214 ~~~v~l~iwDtaGQe-----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~--~~~~~~i~~~~  280 (402)
T 1azs_C          214 VDKVNFHMFDVGGQR-----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA--LNLFKSIWNNR  280 (402)
T ss_dssp             ETTEEEEEEEECCSG-----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH--HHHHHHHHTCT
T ss_pred             cCCccceecccchhh-----------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH--HHHHHHHHhcc
Confidence            345679999999922           222334455678999999999984          3333332  23333333221


Q ss_pred             --ccccEEEEEeCCCCCc
Q 027090          136 --VFDYMIVVFTGGDDLE  151 (228)
Q Consensus       136 --~~~~~llv~~~~D~~~  151 (228)
                        ...|++|++||+|+..
T Consensus       281 ~~~~~piiLvgNK~DL~~  298 (402)
T 1azs_C          281 WLRTISVILFLNKQDLLA  298 (402)
T ss_dssp             TCSSCCEEEEEECHHHHH
T ss_pred             cCCCCeEEEEEEChhhhh
Confidence              2238999999999754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.07  E-value=0.00037  Score=51.05  Aligned_cols=24  Identities=13%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+..|+|.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.07  E-value=0.00021  Score=61.17  Aligned_cols=29  Identities=21%  Similarity=0.214  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHH--HhCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNS--ILGRKA   44 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~--l~g~~~   44 (228)
                      -+++..++|+|+||||||||+++  +.|...
T Consensus        36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            35678999999999999999999  556543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.07  E-value=0.00041  Score=54.64  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=22.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +...+..|+|.|++||||||+.+.|..
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999999964

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.07  E-value=0.00027  Score=57.46  Aligned_cols=44  Identities=16%  Similarity=0.063  Sum_probs=31.5

Q ss_pred             CCCHHHHHHHHHHHHHh---------CccccccEEE---EEeCCCCCccchhhHHHHhhcc
Q 027090          116 RFSQEEETAVHRLPNLF---------GKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHE  164 (228)
Q Consensus       116 ~~s~~~~~~l~~~~~~~---------~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~  164 (228)
                      .+|.|+++.+.++.++.         +.+   |++|   |++.+|....  ..+.+.+...
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p---~iLLLDEp~s~LD~~~~--~~l~~~l~~~  320 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFGED---PVLLLDDFTAELDPHRR--QYLLDLAASV  320 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHSSC---CEEEECCGGGCCCHHHH--HHHHHHHHHS
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccCCC---CEEEEeCccccCCHHHH--HHHHHHHHhc
Confidence            47888888888888877         555   4555   7788887766  6676666553

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.05  E-value=0.00026  Score=54.56  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +.+|+|+|++||||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999975

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.04  E-value=0.0003  Score=58.58  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      +..++|+|+||+|||||+++|.+..
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhh
Confidence            4689999999999999999997644

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.04  E-value=0.00027  Score=55.29  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=20.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Q 027090           22 VVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ++|+|++|+|||||+++|.+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            9999999999999999998753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.03  E-value=0.00042  Score=50.13  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..|+|.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999999753

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.02  E-value=0.00042  Score=55.85  Aligned_cols=62  Identities=15%  Similarity=0.099  Sum_probs=38.9

Q ss_pred             CCCCHHHHHH------HHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhc
Q 027090          115 NRFSQEEETA------VHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLC  176 (228)
Q Consensus       115 ~~~s~~~~~~------l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  176 (228)
                      ..+|+|++++      +.++..+..+|   ++++   |++++|....  ..+.+.+..+.         +|+ .++...|
T Consensus       247 ~~lS~G~~~~~~la~~l~~a~~l~~~p---~~lllDEp~~~LD~~~~--~~l~~~l~~~~~~~~~vi~~sH~-~~~~~~~  320 (339)
T 3qkt_A          247 TFLSGGERIALGLAFRLAMSLYLAGEI---SLLILDEPTPYLDEERR--RKLITIMERYLKKIPQVILVSHD-EELKDAA  320 (339)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTTTTT---CEEEEECCCTTCCHHHH--HHHHHHHHHTGGGSSEEEEEESC-GGGGGGC
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHhcCCC---CEEEEECCCCCCCHHHH--HHHHHHHHHHHhcCCEEEEEECh-HHHHHhC
Confidence            4699999994      44555555555   4555   8899998766  66666665421         455 3455556


Q ss_pred             CCeEEE
Q 027090          177 DNRCVL  182 (228)
Q Consensus       177 ~~~~~~  182 (228)
                      +..+.+
T Consensus       321 d~~~~l  326 (339)
T 3qkt_A          321 DHVIRI  326 (339)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            555444

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.02  E-value=0.00045  Score=49.88  Aligned_cols=24  Identities=13%  Similarity=0.144  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...++|+|++|||||||++.|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            358999999999999999999864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.02  E-value=0.00032  Score=56.12  Aligned_cols=66  Identities=14%  Similarity=0.096  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHh----CccccccEEE---EEeCCCCCccchhhHHHHhhccC--------CchHHHHHHhcCCe
Q 027090          115 NRFSQEEETAVHRLPNLF----GKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC--------PKPLKEILQLCDNR  179 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~----~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  179 (228)
                      ..+|.++++++.++.++.    .++   ++++   |++.+|....  ..+.+++....        +|.. ++...|+..
T Consensus       218 ~~lS~Gq~q~v~ia~~l~~~~~~~~---~~lllDEp~~~LD~~~~--~~l~~~l~~~~~~~~vi~~tH~~-~~~~~~d~~  291 (322)
T 1e69_A          218 SLLSGGEKALVGLALLFALMEIKPS---PFYVLDEVDSPLDDYNA--ERFKRLLKENSKHTQFIVITHNK-IVMEAADLL  291 (322)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTSCC---SEEEEESCCSSCCHHHH--HHHHHHHHHHTTTSEEEEECCCT-TGGGGCSEE
T ss_pred             hhCCHHHHHHHHHHHHHHHhccCCC---CEEEEeCCCCCCCHHHH--HHHHHHHHHhcCCCeEEEEECCH-HHHhhCceE
Confidence            369999999999999875    344   4555   8899998766  77777666542        5653 455666654


Q ss_pred             --EEEeeCC
Q 027090          180 --CVLFDNK  186 (228)
Q Consensus       180 --~~~~~~~  186 (228)
                        +.+.++.
T Consensus       292 ~~v~~~~g~  300 (322)
T 1e69_A          292 HGVTMVNGV  300 (322)
T ss_dssp             EEEEESSSC
T ss_pred             EEEEEeCCE
Confidence              3344443

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.00  E-value=0.00031  Score=62.59  Aligned_cols=25  Identities=20%  Similarity=0.084  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      +..++|+|+||+|||||+++|.|..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            6799999999999999999998864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.00  E-value=0.00049  Score=50.84  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+..+|+|+|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            44578999999999999999999754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.99  E-value=0.00052  Score=50.75  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ++..|+|.|..||||||+.+.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.98  E-value=0.00031  Score=56.88  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      -+++..++|+|++|+|||||++.|++..
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467899999999999999999998764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.98  E-value=0.00048  Score=50.19  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..+|+|+|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999963

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.98  E-value=0.00051  Score=51.67  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+.+|+|+|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999854

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.97  E-value=0.00056  Score=49.66  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh
Q 027090           18 GERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ....|+|+|++||||||+.+.|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHH
Confidence            34679999999999999999997

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.97  E-value=0.00055  Score=52.04  Aligned_cols=31  Identities=29%  Similarity=0.437  Sum_probs=22.0

Q ss_pred             ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           11 KPTSPSNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        11 ~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+.+......+|+|+|.+||||||+.+.|..
T Consensus         8 ~p~~~~~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A            8 EPVPESPKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             ------CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3444455567899999999999999999863

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.96  E-value=0.00021  Score=61.28  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      .++..++|+|++|||||||.++|.+...
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            4668999999999999999999988654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.96  E-value=0.00048  Score=50.88  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999975

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.95  E-value=0.00058  Score=50.77  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999964

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.94  E-value=0.0007  Score=51.44  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...+..|+|.|++||||||+++.|...
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            446789999999999999999999754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.93  E-value=0.00058  Score=50.11  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ++..|+|.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999863

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.93  E-value=0.0012  Score=52.23  Aligned_cols=86  Identities=13%  Similarity=0.086  Sum_probs=49.4

Q ss_pred             hccCCccEEEEEEeCCCCC-CHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           99 MAKDGIHAFLVVFSVTNRF-SQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~-s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ..+..+|++++|+|++++. +.... +|+..+..  . .  .|++||+||+|+...  ..+.+         ..++.+..
T Consensus        80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~-~--~piilv~NK~DL~~~--~~v~~---------~~~~~~~~  143 (301)
T 1u0l_A           80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--N-E--LETVMVINKMDLYDE--DDLRK---------VRELEEIY  143 (301)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--T-T--CEEEEEECCGGGCCH--HHHHH---------HHHHHHHH
T ss_pred             cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--C-C--CCEEEEEeHHHcCCc--hhHHH---------HHHHHHHH
Confidence            3567889999999998554 55433 34444332  1 2  379999999998754  44311         11122222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLV  204 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i  204 (228)
                      ...    ...+..||.++.+++++++.+
T Consensus       144 ~~~----~~~~~~SAktg~gv~~lf~~l  167 (301)
T 1u0l_A          144 SGL----YPIVKTSAKTGMGIEELKEYL  167 (301)
T ss_dssp             TTT----SCEEECCTTTCTTHHHHHHHH
T ss_pred             hhh----CcEEEEECCCCcCHHHHHHHh
Confidence            111    112345666777777777654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.92  E-value=0.00058  Score=50.90  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .++..|+|.|.+||||||+.+.|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999999974

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.01  Score=49.38  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.+-|+|.||+|+|||+|.++|.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3468999999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.92  E-value=0.00064  Score=51.01  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999975

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.91  E-value=0.00055  Score=50.02  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..|+|.|++||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.91  E-value=0.00066  Score=50.73  Aligned_cols=26  Identities=23%  Similarity=0.253  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++..|+|+|.+||||||+.+.|.+.
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            44678999999999999999999764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.89  E-value=0.00066  Score=49.69  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998853

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.86  E-value=0.00055  Score=52.78  Aligned_cols=28  Identities=21%  Similarity=0.293  Sum_probs=23.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +...+..|+|+|++||||||+.+.|...
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3445578999999999999999998753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.86  E-value=0.00067  Score=52.33  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..|+|+|++|||||||.+.|...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            46899999999999999998643

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.83  E-value=0.0017  Score=52.02  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ++..|+|+|++|||||||...|....
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            44689999999999999999998653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.82  E-value=0.00071  Score=51.16  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ...|+|+|++||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999986

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.82  E-value=0.00027  Score=52.76  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .|+|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.78  E-value=0.00074  Score=50.83  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999863

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.77  E-value=0.00073  Score=48.84  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+|+|+|++||||||+.+.|..
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3699999999999999999964

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.011  Score=48.95  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+-|++.||+|+|||+|.+++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999864

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.77  E-value=0.00044  Score=62.68  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .++..++|+||||+|||||++++.+
T Consensus       671 ~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          671 DSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCchHHHHHHHHH
Confidence            4567999999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.77  E-value=0.001  Score=51.00  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ++.+|+|.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999863

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.77  E-value=0.0012  Score=51.87  Aligned_cols=90  Identities=8%  Similarity=0.131  Sum_probs=52.4

Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      +......+|++++|+|+..+.+......    ...++.   +|.++++||+|+...  ...+.+++.         .+..
T Consensus        17 ~~~~l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~~---kp~ilVlNK~DL~~~--~~~~~~~~~---------~~~~   78 (282)
T 1puj_A           17 VTEKLKLIDIVYELVDARIPMSSRNPMI----EDILKN---KPRIMLLNKADKADA--AVTQQWKEH---------FENQ   78 (282)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHHH----HHHCSS---SCEEEEEECGGGSCH--HHHHHHHHH---------HHTT
T ss_pred             HHHHHhhCCEEEEEEeCCCCCccCCHHH----HHHHCC---CCEEEEEECcccCCH--HHHHHHHHH---------HHhc
Confidence            3334456799999999986665543221    122232   389999999999865  444332222         1111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +..++      ..++.++.++.+|++.+.+.+++
T Consensus        79 g~~~i------~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           79 GIRSL------SINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             TCCEE------ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             CCcEE------EEECCCcccHHHHHHHHHHHHHH
Confidence            11222      23455667788888877776653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.77  E-value=0.0012  Score=49.67  Aligned_cols=27  Identities=19%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..++.++|.|+|++||||+|....|..
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345557889999999999999988864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.77  E-value=0.0012  Score=48.18  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ...|+|.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999863

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.75  E-value=0.00086  Score=50.14  Aligned_cols=20  Identities=35%  Similarity=0.730  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~   40 (228)
                      +|+|.|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.017  Score=47.78  Aligned_cols=24  Identities=25%  Similarity=0.553  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+-|++.||+|+|||+|.+++.+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            367999999999999999999864

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.75  E-value=0.001  Score=50.59  Aligned_cols=25  Identities=20%  Similarity=0.237  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..+.+|+|+|++||||||+.+.|.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999999875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.73  E-value=0.00099  Score=50.72  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ...|+|.|++||||||+.+.|.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999997

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.72  E-value=0.00091  Score=51.51  Aligned_cols=23  Identities=30%  Similarity=0.657  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..++|.|++|+|||||.++|.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.0099  Score=48.82  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+-|++.||+|+|||+|.+++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            357999999999999999999864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.71  E-value=0.0044  Score=50.50  Aligned_cols=103  Identities=9%  Similarity=0.059  Sum_probs=58.3

Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +.+.+.+....+..+++++|+|+.+.    +..+...+...+++   +|+++|+||+|+...  ....+.+..    .+.
T Consensus        57 e~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~--~~~~~~~~~----~l~  123 (368)
T 3h2y_A           57 DDFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVGN---NKVLLVGNKADLIPK--SVKHDKVKH----WMR  123 (368)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSSS---SCEEEEEECGGGSCT--TSCHHHHHH----HHH
T ss_pred             HHHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhCC---CcEEEEEEChhcCCc--ccCHHHHHH----HHH
Confidence            34444444444567899999999731    23344445554443   389999999998754  321111111    122


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ...+..+...   ...+..||.++.++++|++.+.+...
T Consensus       124 ~~~~~~g~~~---~~v~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          124 YSAKQLGLKP---EDVFLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             HHHHHTTCCC---SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCc---ccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence            2233322210   01124577788999999999877653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.71  E-value=0.00098  Score=49.87  Aligned_cols=21  Identities=38%  Similarity=0.737  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.70  E-value=0.0008  Score=61.86  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      +..++|+|+||+|||||++++ |...
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHH
Confidence            679999999999999999999 7654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.67  E-value=0.0011  Score=48.72  Aligned_cols=23  Identities=17%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..|+|.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.011  Score=49.42  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.+-|+|.||+|+|||+|.++|.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            3468999999999999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.63  E-value=0.0011  Score=52.42  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ++..++++|++|+||||++..|.+..
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999987653

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.61  E-value=0.0009  Score=48.54  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=16.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999863

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.59  E-value=0.0012  Score=50.28  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           17 NGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      +++..++|.|++|+|||||...++
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            456799999999999999976664

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.59  E-value=0.0015  Score=50.50  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.58  E-value=0.001  Score=56.84  Aligned_cols=29  Identities=17%  Similarity=0.249  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      -.++..++|+|+||+|||||++.+++...
T Consensus       278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          278 FFKDSIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            35667999999999999999999998654

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.57  E-value=0.0017  Score=47.04  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...++|.|++|+|||||++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.57  E-value=0.0018  Score=50.77  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           17 NGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      .....|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999996

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.56  E-value=0.0015  Score=47.80  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.56  E-value=0.0015  Score=46.62  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.54  E-value=0.0012  Score=49.60  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +.+|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999853

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.52  E-value=0.0014  Score=47.05  Aligned_cols=22  Identities=18%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.51  E-value=0.0015  Score=48.88  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.51  E-value=0.0016  Score=53.07  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ...+|+|+||+||||++.+|.
T Consensus        26 gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            588999999999999999974

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.49  E-value=0.0019  Score=49.67  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .....+|+|.|++||||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999999864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.48  E-value=0.0021  Score=47.48  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+..|+|+|++|+|||||...|...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999999754

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.48  E-value=0.0017  Score=48.93  Aligned_cols=20  Identities=30%  Similarity=0.733  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~   40 (228)
                      +|+|.|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.46  E-value=0.002  Score=48.61  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ....++|.|++|+|||||++++...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.46  E-value=0.0016  Score=51.49  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ++..++|.|++|+|||+|.++|.+.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHH
Confidence            3468999999999999999999864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.43  E-value=0.0017  Score=49.25  Aligned_cols=29  Identities=17%  Similarity=0.226  Sum_probs=19.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+..++..|+|.|+.||||||+++.|...
T Consensus        20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           20 GSMARGKFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             ---CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34456789999999999999999998643

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.42  E-value=0.0022  Score=50.88  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...|+|+||+|||||||...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            357999999999999999999754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.42  E-value=0.0028  Score=50.02  Aligned_cols=28  Identities=21%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ..+...++|.|++|+||||+.++|.+..
T Consensus        44 ~~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           44 NRPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             TSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3344689999999999999999998653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.42  E-value=0.0021  Score=47.44  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ..++|.|++|+|||+|..+|....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999998643

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.41  E-value=0.0016  Score=55.93  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ++..++|+|++|+|||||.++|.+..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999998654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.41  E-value=0.0026  Score=50.41  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...|+|+||+|||||||...|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            468999999999999999998643

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.40  E-value=0.0013  Score=53.10  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++|.|++|+||||++++|.+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999873

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.40  E-value=0.0016  Score=53.59  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      -+++..++|+|++|+|||||+..|+
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHH
Confidence            3456799999999999999999653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.39  E-value=0.0018  Score=47.08  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+|+|+|.+||||||+-+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999853

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.35  E-value=0.002  Score=50.61  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...++|.|++|+||||+.+++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            468999999999999999999764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.32  E-value=0.0021  Score=46.40  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...++|.|++|+|||||++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.31  E-value=0.0026  Score=45.45  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+|+|.|..||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999853

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.28  E-value=0.0027  Score=47.40  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+|+|++||||+|....|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.27  E-value=0.0036  Score=51.06  Aligned_cols=101  Identities=9%  Similarity=0.003  Sum_probs=55.4

Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      +.+.+....++.+++++|+|+.+..+    .+...+...+++   +|+++|+||+|+...  ....+.+..    .+.+.
T Consensus        61 f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~~---~piilV~NK~DLl~~--~~~~~~~~~----~l~~~  127 (369)
T 3ec1_A           61 FLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAAD---NPILLVGNKADLLPR--SVKYPKLLR----WMRRM  127 (369)
T ss_dssp             HHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCTT---SCEEEEEECGGGSCT--TCCHHHHHH----HHHHH
T ss_pred             HHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhCC---CCEEEEEEChhcCCC--ccCHHHHHH----HHHHH
Confidence            33333333345689999999984332    222223333333   389999999998754  221111111    12222


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .+......   ...+..||.++.++++|++.+.+...
T Consensus       128 ~~~~g~~~---~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          128 AEELGLCP---VDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHTTTCCC---SEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHcCCCc---ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            33332210   01124577788999999999887664

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.27  E-value=0.0016  Score=51.35  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=17.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +...|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.26  E-value=0.0023  Score=47.54  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...+++.||+|+||||+..+|...
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999888653

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.24  E-value=0.003  Score=46.60  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      -..|+|.|..||||||+.+.|..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.21  E-value=0.0032  Score=49.60  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.19  E-value=0.0031  Score=46.59  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.18  E-value=0.0042  Score=51.45  Aligned_cols=25  Identities=32%  Similarity=0.294  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .....|+|+|.+||||||+.+.|..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999874

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.17  E-value=0.0012  Score=59.78  Aligned_cols=65  Identities=20%  Similarity=0.084  Sum_probs=47.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEE
Q 027090          115 NRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVL  182 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  182 (228)
                      ..+|+|+++++.++..+..++....++|   |++.+|....  ..+.+.+..+.         +|++..+ ..|++++++
T Consensus       844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~--~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL  920 (972)
T 2r6f_A          844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDI--ARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDL  920 (972)
T ss_dssp             GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHH--HHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence            4799999999999999976531112444   7799998876  77777665432         8888875 678877777

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.17  E-value=0.031  Score=41.53  Aligned_cols=66  Identities=15%  Similarity=0.138  Sum_probs=37.8

Q ss_pred             CcEEEEEeCCCC-CCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCccccccEEEEEe
Q 027090           68 GQVVNVIDTPGL-FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFT  145 (228)
Q Consensus        68 ~~~~~~iDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~-~~~l~~~~~~~~~~~~~~~llv~~  145 (228)
                      ...+.++|+|+. ...         .....+.    .+|.+++++..+ ..+... .+.++.+... ..   .++.+++|
T Consensus        67 ~yD~viiD~p~~~~~~---------~~~~~l~----~aD~viiv~~~~-~~~~~~~~~~~~~l~~~-~~---~~~~vv~N  128 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE---------DLEALAD----GCDLLVIPSTPD-ALALDALMLTIETLQKL-GN---NRFRILLT  128 (209)
T ss_dssp             GCSEEEEEEECCCSSS---------HHHHHHH----TSSEEEEEECSS-HHHHHHHHHHHHHHHHT-CS---SSEEEEEC
T ss_pred             cCCEEEEeCCCCcCcH---------HHHHHHH----HCCEEEEEecCC-chhHHHHHHHHHHHHhc-cC---CCEEEEEE
Confidence            346889999985 331         2223333    348888888876 222222 2334444332 11   25778999


Q ss_pred             CCCCCc
Q 027090          146 GGDDLE  151 (228)
Q Consensus       146 ~~D~~~  151 (228)
                      +.+...
T Consensus       129 ~~~~~~  134 (209)
T 3cwq_A          129 IIPPYP  134 (209)
T ss_dssp             SBCCTT
T ss_pred             ecCCcc
Confidence            999765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.15  E-value=0.0036  Score=48.76  Aligned_cols=24  Identities=21%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...++|.|++|+|||+|.+++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.14  E-value=0.0041  Score=49.02  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .....++|.|++|+|||++.+++...
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999887654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.14  E-value=0.003  Score=51.86  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      ....++|+|++|+|||||++.|+...
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.14  E-value=0.0036  Score=49.93  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.11  E-value=0.0036  Score=50.30  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            58999999999999999988643

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.09  E-value=0.0057  Score=48.14  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ....++|.|++|+|||+|.++|...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457888899999999999999754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.09  E-value=0.004  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.216  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +..|+|.|..||||||+.+.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999743

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.08  E-value=0.0028  Score=51.39  Aligned_cols=26  Identities=27%  Similarity=0.459  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      .+..++|.|++|+|||||++.+.+..
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.06  E-value=0.0046  Score=47.44  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...++|.|++|+|||++.+++...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.06  E-value=0.0035  Score=50.96  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      .++|.|++|+|||||++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998653

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.06  E-value=0.004  Score=43.49  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..|+|.|++|+|||++.++|...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999999754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.05  E-value=0.0044  Score=50.38  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l   39 (228)
                      ....+|+|+|..|||||||++.|
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            45689999999999999999886

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.04  E-value=0.003  Score=48.80  Aligned_cols=27  Identities=19%  Similarity=0.190  Sum_probs=22.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...+..|+|.|..||||||+.+.|...
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence            345678999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	2e-29
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-08
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-05
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	0.004

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  108 bits (270), Expect = 2e-29
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 25/227 (11%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
             T++++G+ G GKS+T NSI+G +    S   S   +   +  +    G  +N+IDTPG
Sbjct: 32  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 89

Query: 79  LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVF 137
           L +    ++     I     +    I   L V  +   R    ++     + + FGK ++
Sbjct: 90  LIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147

Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC----------VLFDN-- 185
           +  IV  T            ++F   +  + L ++++   +            VL +N  
Sbjct: 148 NKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDAQASDIPVVLIENSG 206

Query: 186 --KTKDEAK-----GTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSL 225
                D  +     G   +  L+  +  V +      + D+  +  L
Sbjct: 207 RCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKL 253

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 17/166 (10%)

Query: 16  SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNVI 74
            +    V + G TG+GKS+  N++ G    +  A  +GV +   E       +   V   
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 75  DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
           D PG+   +   +           + K   + +     ++    ++ +  + +  ++  K
Sbjct: 113 DLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK 163

Query: 135 NVFDYMIVVFTGGD-DLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179
                   V T  D D+ +           E  K L++I   C N 
Sbjct: 164 EF----YFVRTKVDSDITNEADGEPQTFDKE--KVLQDIRLNCVNT 203

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
            V L+G    GKS   + +   K     A     T    +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 81  DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
           + +     +G + ++ +      I   + +  +  R   ++   +++  + +   + +  
Sbjct: 61  EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119

Query: 141 IVVFTGGDDLEDHEKTLEDFLGHECPK 167
            ++     D+ +  + LE F       
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDD 146

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 21/196 (10%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
           V L+G    GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
            ++  + +G E ++ +   +  ++                +      P L  +     + 
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121

Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
            V               D L  E  K L + L       +     T     G   +++ L
Sbjct: 122 KV---------------DLLEEEAVKALADALAREGLAVLPVSALTG---AGLPALKEAL 163

Query: 202 -SLVNSVIVQNGGQPY 216
            +LV S       +P 
Sbjct: 164 HALVRSTPPPEMPKPV 179

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
            +++G    GKS   N +  +   K                  +K G+ + ++DTPG+  
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKNIAKTGD-----RPGITTSQQWVKVGKELELLDTPGILW 169

Query: 82  LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
                E VG  +    G  KD I     V     RF +E
Sbjct: 170 PKFEDELVGLRLAVT-GAIKDSIINLQDVAVFGLRFLEE 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.9
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.82
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.81
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.8
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.8
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.79
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.79
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.79
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.75
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.74
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.73
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.72
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.71
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.71
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.7
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.7
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.7
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.69
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.68
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.68
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.68
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.67
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.67
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.67
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.67
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.66
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.65
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.65
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.64
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.63
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.63
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.62
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.61
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.61
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.61
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.61
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.61
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.61
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.59
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.59
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.58
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.58
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.57
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.57
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.57
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.57
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.54
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.53
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.53
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.51
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.5
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.5
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.5
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.5
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.5
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.5
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.49
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.48
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.47
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.46
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.45
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.44
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.43
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.38
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.38
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.37
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.37
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.37
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.33
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.32
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.28
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.26
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.25
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.23
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.2
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.2
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.14
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.1
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.08
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.08
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.07
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.05
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.94
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.94
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.92
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.88
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.85
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.74
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.73
d1okkd2	207	GTPase domain of the signal recognition particle r	98.68
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.62
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.58
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.57
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.23
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.13
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.85
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.8
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.76
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.7
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.58
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.56
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.53
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.52
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.49
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.48
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.46
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.43
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.43
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.42
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.4
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.39
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.37
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.36
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.34
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.34
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.33
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.32
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.31
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.3
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.3
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.28
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.25
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.22
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.21
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.18
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.17
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.16
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.14
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.12
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.11
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.11
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.09
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.09
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.07
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.07
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.07
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.06
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.04
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.0
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.99
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.99
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.99
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.95
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.92
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.9
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.86
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.83
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.78
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.78
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.74
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.69
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.69
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.68
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.64
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.6
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.6
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.55
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.51
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.47
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.46
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.44
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.44
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.37
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.37
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.35
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.34
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.33
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.32
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.27
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.27
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.25
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.22
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.21
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.19
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.18
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.14
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.12
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.12
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.09
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.06
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.06
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.05
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.04
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.99
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.98
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.95
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.95
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.92
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.81
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.7
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.69
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.48
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.35
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.33
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.32
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.2
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.12
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.03
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.99
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.94
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.93
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.88
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.79
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.79
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.76
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.73
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.68
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.59
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.45
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.4
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.26
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.19
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.15
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.08
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.95
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.76
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.68
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.66
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.87
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.77
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.53
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.43
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.09
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.96
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.79
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.47
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.34
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.26
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.12
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.28
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.51
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.01
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.74
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.67
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	88.66
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.24
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.2
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	86.88
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.4
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.11
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.64
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.58
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.34
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.34
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.84
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.77
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	82.32
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	80.71
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	80.61

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.3e-22  Score=148.80  Aligned_cols=173  Identities=19%  Similarity=0.186  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+|+|.+|+|||||+|+|+|....  .......++...........+..+.++||||+........   ..+......
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~--~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~---~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVA--PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALG---EFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCS--CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHH---HHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCce--eecccCCcccccccceeeeeeeeeeecccccccccccccc---hhccccccc
Confidence            47999999999999999999998642  2223333433333333445677899999999876543322   222333334


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+|++++++|++.+++..+..+++.+.....+   +|+++|+||+|+...  .+  ..++        .+.+.....
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~--~~--~~~~--------~~~~~~~~~  145 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKY--PE--EAMK--------AYHELLPEA  145 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSS--HH--HHHH--------HHHHTSTTS
T ss_pred             ccccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccC--HH--HHHH--------HHHhhcccC
Confidence            45688999999999988888877777776654333   389999999998764  22  1111        122222211


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChh
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE  219 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  219 (228)
                      -+     +..||.++.++++|++.|.+.+++  .++|+++
T Consensus       146 ~~-----~~iSA~~~~gi~~L~~~i~~~lpe--~p~~~p~  178 (178)
T d1wf3a1         146 EP-----RMLSALDERQVAELKADLLALMPE--GPFFYPE  178 (178)
T ss_dssp             EE-----EECCTTCHHHHHHHHHHHHTTCCB--CCCSSCT
T ss_pred             ce-----EEEecCCCCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            11     224788999999999999999876  5677664

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.89  E-value=5.8e-22  Score=153.29  Aligned_cols=205  Identities=21%  Similarity=0.322  Sum_probs=138.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .....+|+|+|.+|+|||||+|+|+|...+..... .+.|...... .....+..+.++||||+.+.....+.....+..
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~-~~~T~~~~~~-~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMV-SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEE-EEEETTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCC-CCcceeEEEE-EEEeccEEEEEEeeecccCCcchHHHHHHHHHH
Confidence            34568999999999999999999999987544422 2334333333 334677889999999998876555544333333


Q ss_pred             HHhhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      +.  ....+|++++++..+ .+++..+...++.+...++...++++++|+||+|........+++++.. ....+..++.
T Consensus       107 ~~--~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~  183 (257)
T d1h65a_         107 FL--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVR  183 (257)
T ss_dssp             HT--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHH
T ss_pred             HH--hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHH
Confidence            32  234789999999886 4799999999999999999888889999999999886544566666654 1223334444


Q ss_pred             hcCC----------eEEEeeC--CCcc-------cccchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhc
Q 027090          175 LCDN----------RCVLFDN--KTKD-------EAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKVTSL  225 (228)
Q Consensus       175 ~~~~----------~~~~~~~--~~~~-------~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~  225 (228)
                      .|..          ..++..+  ....       -......+++++..+.+++..+..+.+.++.+.++.
T Consensus       184 ~~~~~~~~~~~~~~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i~~~~~~i~~~  253 (257)
T d1h65a_         184 SGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKL  253 (257)
T ss_dssp             HHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHH
T ss_pred             HHhhhhhhhccccCCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCccccHHHHhhh
Confidence            4322          1222211  1110       001124578899999999988777777776666543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=1.7e-20  Score=137.50  Aligned_cols=168  Identities=14%  Similarity=0.109  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      .|+|+|.+|||||||+|+|+|.......  ....|+...........+..+.++||||+.............+...    
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~----   76 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH----   76 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceec--cCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHH----
Confidence            4999999999999999999998653222  2233444444333434566799999999876432211111222222    


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
                      ....++++++++...............+.........+|+++|+||+|+...  +.+....+.         ...-... 
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~---------~~~~~~~-  144 (180)
T d1udxa2          77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADA---------LAREGLA-  144 (180)
T ss_dssp             HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHH---------HHTTTSC-
T ss_pred             HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH--HHHHHHHHH---------HHhcCCe-
Confidence            2456899999998633322222333333322112223489999999999876  655543333         2211112 


Q ss_pred             EEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                           .+..||.++.++++|++.|.++++..
T Consensus       145 -----~~~iSA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         145 -----VLPVSALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             -----EEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             -----EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence                 23468889999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=1.5e-19  Score=132.72  Aligned_cols=167  Identities=22%  Similarity=0.214  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCC-cceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH----HHHH
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK----EIVK   95 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~----~~~~   95 (228)
                      .|+|+|++|||||||+|+|+|....   ....+ .|.....     .....+.++||||++..........+    .+..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~---~~~~~g~T~~~~~-----~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~   73 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR---RGKRPGVTRKIIE-----IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVH   73 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS---SSSSTTCTTSCEE-----EEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce---eeCCCCEeecccc-----cccccceecccCCceeccccccccccccchhhhh
Confidence            6899999999999999999998652   22222 3333221     12234678999998766655443322    2333


Q ss_pred             HHhhccCCccEEEEEEeCC-----------CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhcc
Q 027090           96 CLGMAKDGIHAFLVVFSVT-----------NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~-----------~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~  164 (228)
                      ++....+.+|++++++|+.           ......+...++.+...   .  +|+++|+||+|..... +...+.+...
T Consensus        74 ~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~---~--~p~iiv~NK~D~~~~~-~~~~~~~~~~  147 (184)
T d2cxxa1          74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL---D--IPTIVAVNKLDKIKNV-QEVINFLAEK  147 (184)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT---T--CCEEEEEECGGGCSCH-HHHHHHHHHH
T ss_pred             hhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc---C--CCEEEEEeeeehhhhH-HHHHHHHHHH
Confidence            4444556789999999975           12333444444444332   2  3799999999987541 2222222210


Q ss_pred             CCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ....+....          ...++.||.++.++++|++.|.+.++++
T Consensus       148 ~~~~~~~~~----------~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         148 FEVPLSEID----------KVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             HTCCGGGHH----------HHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             hcccccccC----------CeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            000000000          0113457888899999999999999873

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=1.2e-18  Score=129.12  Aligned_cols=174  Identities=14%  Similarity=0.149  Sum_probs=109.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH--HH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG--KE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~--~~   92 (228)
                      |...-.+|+|+|++|||||||+|+|+|..... .......++......   .....+.++|+++............  ..
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~-~~~~~~~~t~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLA-RTSSKPGKTQTLNFY---IINDELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEE---EETTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCCceE-Eeecccceeeecccc---cccccceEEEEEeeccccccccccchhhh
Confidence            34444589999999999999999999875311 111222222111111   2234567889998776655443321  12


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      +..........++++++++|+..++...+.+.++.+...   .  +|+++|+||+|....  ..+.+.++.     +++.
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~---~--~piivv~NK~D~~~~--~~~~~~~~~-----~~~~  162 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY---G--IPVIVIATKADKIPK--GKWDKHAKV-----VRQT  162 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG--GGHHHHHHH-----HHHH
T ss_pred             HHhhhhccccchhhhhhhhhccccccccccccccccccc---c--CcceechhhccccCH--HHHHHHHHH-----HHHH
Confidence            222222344678999999999888888888888877653   2  279999999998876  676666665     4444


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .......-     .+..||.++.++++|++.|.+.+.
T Consensus       163 l~~~~~~~-----~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         163 LNIDPEDE-----LILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HTCCTTSE-----EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             hcccCCCC-----EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            33222211     123577788999999999988764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=6.2e-19  Score=128.00  Aligned_cols=166  Identities=19%  Similarity=0.203  Sum_probs=103.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+|+|++|||||||+|+|+|.....  ......++..............+.++|+||+.........  ..........
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~--~~~~~~~~~~   77 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAI--VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIIS--QKMKEVTLNM   77 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCC--HHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcce--ecccCceeeccccccccccccccccccccceeeeeccccc--cccccccccc
Confidence            69999999999999999999976421  2222333333333333356667899999998765432111  1222222223


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeE
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC  180 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
                      ...+|+++++.+........+..++.++... +    +|+++++||+|....  ... +..        .++.+.-    
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~----~pviiv~NK~Dl~~~--~~~-~~~--------~~~~~~~----  137 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLRE--FER-EVK--------PELYSLG----  137 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHH--HHH-HTH--------HHHGGGS----
T ss_pred             cccCcEEEEeecccccccccccccccccccc-c----ccccccchhhhhhhh--hhh-HHH--------HHHHhcC----
Confidence            3567999999999888888887777766543 2    279999999998744  221 111        1122111    


Q ss_pred             EEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                        +...++.||.++.++++|++.|.+.+++..
T Consensus       138 --~~~~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         138 --FGEPIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             --SCSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             --CCCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence              112345688999999999999999998854

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.5e-20  Score=131.83  Aligned_cols=160  Identities=19%  Similarity=0.148  Sum_probs=102.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +.+|+++|++|||||||+|+|+|......  .....++...........+..+.++|+||+.+......   ........
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~   75 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIV--TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVE---RIGIERAW   75 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCC--CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHH---HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEe--ecccccccceEeeeeeccCceeeeccccccccccccch---hHHHHHHH
Confidence            46899999999999999999999875222  22222322222333346677899999999887543222   22222222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      .....+|.++++++.....+......+..........  +|+++|+||+|+...  ...   +.+            ...
T Consensus        76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~~~--~~~---~~~------------~~~  136 (161)
T d2gj8a1          76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--TLG---MSE------------VNG  136 (161)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--CCE---EEE------------ETT
T ss_pred             HHHHhccccceeeccccccchhhhhhhhhhhhhcccc--cceeeccchhhhhhh--HHH---HHH------------hCC
Confidence            3345789999999998666666666544444443333  389999999997644  211   111            111


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                           ...+..||.++.++++|++.|.+.
T Consensus       137 -----~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         137 -----HALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             -----EEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             -----CcEEEEECCCCCCHHHHHHHHHhh
Confidence                 122346888999999999988653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=3.5e-19  Score=130.95  Aligned_cols=171  Identities=19%  Similarity=0.234  Sum_probs=103.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHH-----HHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-----VGKEI   93 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~-----~~~~~   93 (228)
                      ..+|+|+|++|+|||||+|+|+|.....  ......++..........++..+.++|+||+.........     .....
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERAL--VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEE--ECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcce--eecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            4899999999999999999999976422  2223334333333333467788999999997543221110     00112


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ...+    ..+|++++++++..+.......++..+...   .  .|+++|+||+|........+..+.+.     +.+..
T Consensus        86 ~~~~----~~~dvii~v~d~~~~~~~~~~~~~~~~~~~---~--~~~i~v~nK~D~~~~~~~~~~~~~~~-----~~~~~  151 (186)
T d1mkya2          86 VDSI----EKADVVVIVLDATQGITRQDQRMAGLMERR---G--RASVVVFNKWDLVVHREKRYDEFTKL-----FREKL  151 (186)
T ss_dssp             HHHH----HHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHC
T ss_pred             HHHH----hcCCEEEEeecccccchhhHHHHHHHHHHc---C--CceeeeccchhhhcchhhhhhhHHHH-----HHHHh
Confidence            2222    356999999999877887777776666543   2  27999999999865421223332222     22222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..++.     .+.+..||.++.++++|++.|.+.+..
T Consensus       152 ~~~~~-----~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         152 YFIDY-----SPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             GGGTT-----SCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cccCC-----CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            22221     123456888899999999999988776

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=2.9e-19  Score=131.41  Aligned_cols=170  Identities=16%  Similarity=0.084  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      .|+|+|++|||||||+|+|+|.....  ......|+...........+..+.++||||+...........+.+...+.  
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~--~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~--   78 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE--   78 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCce--ecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH--
Confidence            69999999999999999999876521  22233444444333343456678999999975433322222233333333  


Q ss_pred             cCCccEEEEEEeCC--CCCCHHHHH-HHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090          101 KDGIHAFLVVFSVT--NRFSQEEET-AVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus       101 ~~~~~~il~v~~~~--~~~s~~~~~-~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                        ..+.+++++...  ......... ........... ...+|+++|+||+|....  ....+.           +.+..
T Consensus        79 --~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~~~~~~-----------~~~~~  143 (185)
T d1lnza2          79 --RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEA-----------FKEKL  143 (185)
T ss_dssp             --HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHH-----------HHHHC
T ss_pred             --HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--HHHHHH-----------HHHHh
Confidence              336677776654  223333322 22222222211 123589999999998754  332221           11211


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCC
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG  213 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~  213 (228)
                      ..    ....+..||.++.++++|++.|.+.+++...
T Consensus       144 ~~----~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p~  176 (185)
T d1lnza2         144 TD----DYPVFPISAVTREGLRELLFEVANQLENTPE  176 (185)
T ss_dssp             CS----CCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             cc----CCcEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence            11    1134567899999999999999999987544

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.79  E-value=1.2e-18  Score=127.36  Aligned_cols=168  Identities=18%  Similarity=0.206  Sum_probs=105.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccC-----CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      +..+|+++|++++|||||+|+|++........     .....+...... ........+.++|+||.           .+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~d~~g~-----------~~   71 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFS-AFKLENYRITLVDAPGH-----------AD   71 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCC-EEEETTEEEEECCCSSH-----------HH
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccc-ccccCCccccccccccc-----------cc
Confidence            34689999999999999999999754311100     001111111111 12245667889999992           23


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      +...+.......|++++++++..+....++..+..+...   .  .|+++++||+|....  +........     .+++
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~---~--~p~iiv~NKiD~~~~--~~~~~~~~~-----~~~~  139 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF---N--IPIIVVITKSDNAGT--EEIKRTEMI-----MKSI  139 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhhc---C--CcceeccccccccCH--HHHHHHHHH-----HHHH
Confidence            344444455677999999999988887777666555432   2  279999999999876  554433332     3333


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .+.....  .....++.||.+++++++|++.|.+.+++.
T Consensus       140 ~~~~~~~--~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         140 LQSTHNL--KNSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             HHHSSSG--GGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             HHHhhcC--CCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            3322111  011334578889999999999999998874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.75  E-value=3.8e-17  Score=117.59  Aligned_cols=160  Identities=14%  Similarity=0.065  Sum_probs=100.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+|+|++|||||||++.|.+....     ....|........ ..++..+.++||||.           ..+.....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-----~~~~t~~~~~~~~-~~~~~~~~~~D~~G~-----------~~~~~~~~   64 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTL-EHRGFKLNIWDVGGQ-----------KSLRSYWR   64 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-----SCCCCSSEEEEEE-EETTEEEEEEEECCS-----------HHHHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-----cccceEeeeeeec-cccccceeeeecCcc-----------hhhhhHHH
Confidence            479999999999999999999987541     1233433333333 356778999999991           22333444


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHH-HH-HHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEET-AV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l-~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......++++++++..+..+..+.. .+ ..+....  ....|++++.||+|+...  ...........       ....
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~-------~~~~  133 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER--LAGATLLIFANKQDLPGA--LSCNAIQEALE-------LDSI  133 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTC--CCHHHHHHHTT-------GGGC
T ss_pred             hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcc--cCCCceEEEEeccccccc--cCHHHHHHHHH-------hhhh
Confidence            5667889999999998655554432 22 2222111  122389999999998754  44443222200       0111


Q ss_pred             CC-eEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .. .+.+    ...||.++.++.+++++|.+.+..
T Consensus       134 ~~~~~~~----~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         134 RSHHWRI----QGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CSSCEEE----EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hcCCCEE----EEEECCCCCCHHHHHHHHHHHHHc
Confidence            11 1211    345788899999999998877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=2.2e-18  Score=123.52  Aligned_cols=156  Identities=17%  Similarity=0.203  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~--~~~~~~~~~~~   97 (228)
                      .+|+|+|.+|+|||||+|+|+|.....  ......++...........+..+.++||||+.......  ....+.....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAI--VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCC--CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee--eeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            479999999999999999999876422  22222222222222233567788999999986543321  11112222223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                          ..+|++++++++++..+..+......+    ...   ++++++||.|....  .........         .... 
T Consensus        79 ----~~ad~ii~v~d~~~~~~~~~~~~~~~~----~~~---~~i~~~~k~d~~~~--~~~~~~~~~---------~~~~-  135 (160)
T d1xzpa2          79 ----EKADIVLFVLDASSPLDEEDRKILERI----KNK---RYLVVINKVDVVEK--INEEEIKNK---------LGTD-  135 (160)
T ss_dssp             ----HHCSEEEEEEETTSCCCHHHHHHHHHH----TTS---SEEEEEEECSSCCC--CCHHHHHHH---------HTCS-
T ss_pred             ----HhCCEEEEEEeCCCCcchhhhhhhhhc----ccc---cceeeeeeccccch--hhhHHHHHH---------hCCC-
Confidence                345999999999977777665543332    222   68899999999876  443332222         1111 


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                            .+.+..||.++.++++|++.|.+
T Consensus       136 ------~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         136 ------RHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             ------TTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             ------CcEEEEECCCCCCHHHHHHHHHh
Confidence                  12234688899999999998754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=3.2e-17  Score=122.25  Aligned_cols=173  Identities=16%  Similarity=0.164  Sum_probs=103.4

Q ss_pred             CccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCCcceee-----EeEe---------------------
Q 027090           10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTC-----EMKT---------------------   62 (228)
Q Consensus        10 ~~~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~-----~~~~---------------------   62 (228)
                      |....|+   .+|+++|+.++|||||+++|++....... ......+...     ....                     
T Consensus         2 ~~~~~p~---ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (205)
T d2qn6a3           2 WPKVQPE---VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGS   78 (205)
T ss_dssp             CCCCCCC---EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTC
T ss_pred             CCCCCCC---eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeee
Confidence            5444444   79999999999999999999985321100 0000000000     0000                     


Q ss_pred             -eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccE
Q 027090           63 -TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYM  140 (228)
Q Consensus        63 -~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~  140 (228)
                       ......+.+.++||||           ..++...+......+|.+++++++..++ ...+++.+.++.. ++.+   |+
T Consensus        79 ~~~~~~~r~~~iiD~PG-----------H~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i~---~i  143 (205)
T d2qn6a3          79 DDEPKFLRRISFIDAPG-----------HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVK---NL  143 (205)
T ss_dssp             CSCCEEEEEEEEEECSC-----------HHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CE
T ss_pred             eccccceEEEEEeccch-----------HHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCCc---ee
Confidence             0001123589999999           2445555555556789999999998776 4444555555444 3433   68


Q ss_pred             EEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       141 llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ++++||+|+...  .+.......     +.+........   ....++.||.++.++++|++.|...+++
T Consensus       144 IV~vNK~Dl~~~--~~~~~~~~~-----~~~~l~~~~~~---~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         144 IIVQNKVDVVSK--EEALSQYRQ-----IKQFTKGTWAE---NVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             EEEEECGGGSCH--HHHHHHHHH-----HHHHHTTSTTT---TCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             eeccccCCCccc--hHHHHHHHH-----HHHHhccccCC---CCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            999999999866  444433332     33333221110   0123567888999999999999988765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.73  E-value=3.4e-17  Score=120.90  Aligned_cols=169  Identities=17%  Similarity=0.186  Sum_probs=108.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCc------c--------cccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKA------F--------KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~------~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   83 (228)
                      +..+|+++|+.++|||||+++|++...      .        ......+.+|.+....... +....+.++||||     
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~-~~~~~~~~iDtPG-----   75 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPG-----   75 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSS-----
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEE-eceeeEEeecCcc-----
Confidence            347899999999999999999975210      0        0001122445444333333 5677899999999     


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhH-HHHhh
Q 027090           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLG  162 (228)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~-~~~~~  162 (228)
                            ..++...+......+|++++++++.++....+++.+.++..+ +.+   |+++++||+|....  .+. +...+
T Consensus        76 ------h~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-~~~---~iIv~iNK~D~~~~--~~~~~~i~~  143 (196)
T d1d2ea3          76 ------HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GVE---HVVVYVNKADAVQD--SEMVELVEL  143 (196)
T ss_dssp             ------HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCSC--HHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-cCC---cEEEEEeccccccc--HHHHHHHHH
Confidence                  245555566666788999999999989998888877777665 333   68999999998754  333 33333


Q ss_pred             ccCCchHHHHHHhcCCeEEEeeCCCcccccch----------HHHHHHHHHHHHHHHh
Q 027090          163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~i~~~~~~  210 (228)
                      +     +++....+.... -....++.|+.++          .++++|++.|.+.+++
T Consensus       144 ~-----i~~~l~~~~~~~-~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~  195 (196)
T d1d2ea3         144 E-----IRELLTEFGYKG-EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (196)
T ss_dssp             H-----HHHHHHHTTSCT-TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             H-----HHHHHHHhCCCc-ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCC
Confidence            3     555554432100 0000122344333          5889999988877653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.72  E-value=2.4e-17  Score=122.03  Aligned_cols=168  Identities=13%  Similarity=0.158  Sum_probs=102.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCCcceeeEeE--e--------------------eeeeCCcEEEE
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMK--T--------------------TVLKDGQVVNV   73 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~--~--------------------~~~~~~~~~~~   73 (228)
                      ++..+|+++|+.++|||||+|+|+|...-.. .......|......  .                    ........+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            4557899999999999999999998532110 00001111111100  0                    00111234789


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      +||||           ...+...+......+|.+++++++..+. ....++.+.++... +.+   ++++++||+|....
T Consensus        83 iDtPG-----------h~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~---~iiv~inK~D~~d~  147 (195)
T d1kk1a3          83 IDAPG-----------HEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK  147 (195)
T ss_dssp             EECSS-----------HHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH
T ss_pred             eccch-----------hhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCc---cceeeeecccchhh
Confidence            99999           2345555555555779999999998665 44455666665544 333   58889999998865


Q ss_pred             chhhHHHHhhccCCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                        .......+.     +.+........   .-..++.||.++.++++|++.|.+.+|
T Consensus       148 --~~~~~~~~~-----~~~~~~~~~~~---~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         148 --EKALENYRQ-----IKEFIEGTVAE---NAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             --HHHHHHHHH-----HHHHHTTSTTT---TCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             --HHHHHHHHH-----HHHHhccccCC---CCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence              444433333     44444332211   001245788999999999999988654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.71  E-value=5.5e-17  Score=116.73  Aligned_cols=160  Identities=14%  Similarity=0.070  Sum_probs=95.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +.+|+++|++|||||||++.|.+....    .....|......... .+...+.++|+||-.           .+.....
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~----~~~~~T~~~~~~~~~-~~~~~~~i~D~~G~~-----------~~~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFN----EDMIPTVGFNMRKIT-KGNVTIKLWDIGGQP-----------RFRSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC----CSCCCCCSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCC----Ccccccceeeeeeee-eeeEEEEEeeccccc-----------ccccccc
Confidence            579999999999999999999876642    122334433333333 567789999999921           1112222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      .....++++++++++.+.-+..... ++..+.... .....|++|+.||.|+...  .......+...       ...+.
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pi~lv~nK~Dl~~~--~~~~~i~~~~~-------~~~~~  135 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPGA--LDEKELIEKMN-------LSAIQ  135 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTC--CCHHHHHHHTT-------GGGCC
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhhhh-cccCCcEEEEEeccccchh--hhHHHHHHHHH-------HHHHH
Confidence            2345789999999998655555433 222222221 1123489999999998654  33333222200       01121


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      .....   .+..|+.++.+++++++.|.+.
T Consensus       136 ~~~~~---~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         136 DREIC---CYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             SSCEE---EEECCTTTCTTHHHHHHHHHHT
T ss_pred             hCCCE---EEEEeCcCCcCHHHHHHHHHHc
Confidence            11111   1345778889999999887653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.71  E-value=4.9e-17  Score=118.25  Aligned_cols=165  Identities=18%  Similarity=0.144  Sum_probs=99.1

Q ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHH
Q 027090           12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK   91 (228)
Q Consensus        12 ~~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~   91 (228)
                      +..+.++..+|+++|++|||||||+|.|.+........     +....... ....+..+.++|++|...          
T Consensus         9 ~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~-----~~~~~~~~-i~~~~~~~~i~d~~g~~~----------   72 (176)
T d1fzqa_           9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-----TQGFNIKS-VQSQGFKLNVWDIGGQRK----------   72 (176)
T ss_dssp             CSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-----ETTEEEEE-EEETTEEEEEEECSSCGG----------
T ss_pred             hhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCccee-----eeeeeEEE-eccCCeeEeEeecccccc----------
Confidence            34555667899999999999999999998876421111     11111122 224567799999999332          


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHH
Q 027090           92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK  170 (228)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                       +...........|++++++|+++..+..+.. ++..+..... ....|++++.||+|+...  .......+.     +.
T Consensus        73 -~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~--~~~~~~~~~-----~~  143 (176)
T d1fzqa_          73 -IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-----LN  143 (176)
T ss_dssp             -GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT
T ss_pred             -chhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc--ccHHHHHHH-----HH
Confidence             1122223345679999999998666665543 3333222211 122489999999999765  443332221     00


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                        ...+....+.   ....||.++.+++|++++|.+
T Consensus       144 --~~~~~~~~~~---~~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         144 --LHTIRDRVWQ---IQSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             --GGGCCSSCEE---EEECCTTTCTTHHHHHHHHHH
T ss_pred             --HHHHHhcCCE---EEEEeCCCCCCHHHHHHHHHh
Confidence              0112221111   133588889999999998765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=9.2e-17  Score=116.12  Aligned_cols=161  Identities=16%  Similarity=0.118  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .+|+|+|.+|||||||++.+++......  .....+.+........ .....+.++||||-.           ++.....
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e-----------~~~~~~~   72 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE-----------RYRTITT   72 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-----------GGHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcc--cccccccceeeEEEEeecceEEEEEEECCCch-----------hhHHHHH
Confidence            5899999999999999999987654211  1112222222222211 122358899999922           2223344


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      ...+.+|++++|++..+.-+.... .++..+.......  .|++++.||+|....  ..+..       .....+.+...
T Consensus        73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~--~~v~~-------~~~~~~~~~~~  141 (169)
T d3raba_          73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDE--RVVSS-------ERGRQLADHLG  141 (169)
T ss_dssp             TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSC--CEEEEEEECTTCGGG--CCSCH-------HHHHHHHHHHT
T ss_pred             HHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCc--ceEEEEEeecccccc--cccch-------hhhHHHHHHcC
Confidence            456788999999999854344333 2344444333333  378889999997654  32211       01122222222


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      -.      .+..||.++.+++++++.|.+.+.+
T Consensus       142 ~~------~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         142 FE------FFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             CE------EEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             CE------EEEecCCCCcCHHHHHHHHHHHHhh
Confidence            12      2345778889999999988887754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.1e-16  Score=116.22  Aligned_cols=167  Identities=17%  Similarity=0.088  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+|+|++|||||||++.+++.............+...............+.++||||..           +.......
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~-----------~~~~~~~~   71 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE-----------RFQSLGVA   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCch-----------hhhhHHHH
Confidence            6899999999999999999987654221111111111111111111223457899999932           22233445


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ....+++++++++.++..|.... .++..+......  +...|++++.||+|+...  +.+..      ....+++.+..
T Consensus        72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~--~~~v~------~~~~~~~~~~~  143 (175)
T d1ky3a_          72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES--KKIVS------EKSAQELAKSL  143 (175)
T ss_dssp             CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG--GCCSC------HHHHHHHHHHT
T ss_pred             HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh--hcchh------HHHHHHHHHHc
Confidence            56788999999999866555543 355555444322  223489999999998653  22110      01122333333


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...     ..+..||.++.+++++++.|.+.+-+
T Consensus       144 ~~~-----~~~e~SA~~g~gv~e~f~~l~~~~l~  172 (175)
T d1ky3a_         144 GDI-----PLFLTSAKNAINVDTAFEEIARSALQ  172 (175)
T ss_dssp             TSC-----CEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCC-----eEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            221     11345788889999999888765544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-16  Score=114.95  Aligned_cols=164  Identities=16%  Similarity=0.100  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|.+|+|||||++.+++....    .....|............  ...+.++|++|....           ....
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-----------~~~~   67 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFP----EVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY-----------DRLR   67 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------TTTG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC----CCcCCceeeeccccccccccceeeeccccCccchh-----------cccc
Confidence            68999999999999999999877642    122233322222112222  335899999994322           2223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----CchHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLK  170 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~~~  170 (228)
                      .......|++++|+|++++-|....  .++..+... ...  .|++|+.||+|....  ...........     .+..+
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~piilvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~e~~  142 (177)
T d1kmqa_          68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPN--VPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEGR  142 (177)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT--SCEEEEEECGGGTTC--HHHHHHHHHTTCCCCCHHHHH
T ss_pred             hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCC--CceEEeeecccccch--hhHHHHHHHhhcccccHHHHH
Confidence            3456788999999999865555443  344555443 322  289999999999765  44433332212     11233


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      .+.+......+     +..||.++.+++++++.+.+.+
T Consensus       143 ~~a~~~~~~~~-----~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         143 DMANRIGAFGY-----MECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             HHHHHTTCSEE-----EECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCcEE-----EEecCCCCcCHHHHHHHHHHHH
Confidence            33333322111     2457888999999999887765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.4e-16  Score=112.91  Aligned_cols=165  Identities=17%  Similarity=0.167  Sum_probs=99.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .....+|+|+|..|||||||++.+++....    .....|...........++  ..+.++||+|.........      
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~------   72 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFV----SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMRE------   72 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCC----SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHH------
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCC----cccccccccceeeEeccCCeeeeeeccccccccccccccc------
Confidence            344579999999999999999999876542    1122222222211122333  3578899999766543221      


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                       .++    ..+|++++++|.++.-|.... .++..+....... ..|++||.||+|+...  +....       .....+
T Consensus        73 -~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~~--~~~~~-------~~~~~~  137 (173)
T d2fn4a1          73 -QYM----RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLESQ--RQVPR-------SEASAF  137 (173)
T ss_dssp             -HHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS-CCCEEEEEECGGGGGG--CCSCH-------HHHHHH
T ss_pred             -hhh----ccceeeeeecccccccccchhhhhhHHHHHHhccC-CCceEEEEEeechhhc--cccch-------hhhhHH
Confidence             122    245999999999866566554 3444444433222 2389999999997643  22110       012222


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .+..+-.      .+..||.++.+++++++.+.+.+.+.
T Consensus       138 ~~~~~~~------~~e~Sak~g~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         138 GASHHVA------YFEASAKLRLNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             HHHTTCE------EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHhcCCE------EEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            2222211      13457888999999999998887764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.69  E-value=1.8e-16  Score=115.84  Aligned_cols=167  Identities=16%  Similarity=0.096  Sum_probs=102.0

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      ...++..+|+++|.+|||||||++.|.+.......+     |....... .......+.++|+||.....          
T Consensus        12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~-----t~~~~~~~-~~~~~~~~~i~D~~g~~~~~----------   75 (182)
T d1moza_          12 WGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVET-LSYKNLKLNVWDLGGQTSIR----------   75 (182)
T ss_dssp             TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEE-EEETTEEEEEEEEC----CC----------
T ss_pred             hCCCceEEEEEECCCCCCHHHHHHHHhcCCCCcccc-----ccceEEEE-EeeCCEEEEEEecccccccc----------
Confidence            356677999999999999999999998776532221     21112222 22467789999999944322          


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                       .........+++++++++.++..+..+.. ++........ ....|++++.||+|+...  ....+..+.+.       
T Consensus        76 -~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~~~-------  144 (182)
T d1moza_          76 -PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA--LSASEVSKELN-------  144 (182)
T ss_dssp             -TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC--CCHHHHHHHTT-------
T ss_pred             -hhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhc-cCCcceEEEEEeeccccc--cCHHHHHHHHH-------
Confidence             22233456889999999998777776543 3333222211 112389999999998654  33333222200       


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...+....+   ..+..||.++.++++++++|.+.+.+
T Consensus       145 ~~~~~~~~~---~~~e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         145 LVELKDRSW---SIVASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             TTTCCSSCE---EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCC---EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            011121111   12456888999999999999888876

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.7e-16  Score=111.22  Aligned_cols=161  Identities=17%  Similarity=0.153  Sum_probs=99.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      +..+|+|+|..|||||||++.+++....    .....|....+......++  ..+.++||+|........         
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~---------   69 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFV----DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP---------   69 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCC----SCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC---------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCC----cccCcceecccceEEecCcEEEEeeeccccccccccccc---------
Confidence            4579999999999999999999876542    2223333333222222333  347889999976543321         


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                        ......+|++++++|+++.-|..... ++..+....+.+. .|++|+.||+|+...  +.+..       ...+++.+
T Consensus        70 --~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-~piilvgnK~Dl~~~--r~v~~-------~~~~~~a~  137 (167)
T d1xtqa1          70 --QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPIMLVGNKKDLHME--RVISY-------EEGKALAE  137 (167)
T ss_dssp             --GGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSC-CCEEEEEECTTCGGG--CCSCH-------HHHHHHHH
T ss_pred             --chhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccc-cceeeeccccccccc--cchhH-------HHHHHHHH
Confidence              13446789999999998665665543 4555555444332 389999999998654  33211       01222332


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ..+-.+      +..||.++.+++++++.|...+.
T Consensus       138 ~~~~~~------~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         138 SWNAAF------LESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             HHTCEE------EECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCEE------EEEecCCCCCHHHHHHHHHHHhc
Confidence            222121      24588899999999987765543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.7e-15  Score=110.62  Aligned_cols=176  Identities=14%  Similarity=0.189  Sum_probs=98.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      |.....+|+|+|++|||||||+|+|++.......  ....++...........+......++++................
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLART--SKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEee--cccccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence            3455689999999999999999999987642221  11122221222222233434444444444433333333222222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ............++.+.+............+......   .  .+.++++||+|....  ......++.     +.+...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~v~~k~D~~~~--~~~~~~~~~-----~~~~l~  157 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS---N--IAVLVLLTKADKLAS--GARKAQLNM-----VREAVL  157 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHHG
T ss_pred             hhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc---c--ccccchhhhhhccCH--HHHHHHHHH-----HHHHHH
Confidence            2222334456677777777766666666666655443   2  268889999999876  666655555     444444


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ......    ..+..||.++.++++|.+.|.+.+
T Consensus       158 ~~~~~~----~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         158 AFNGDV----QVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GGCSCE----EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hhCCCC----cEEEEeCCCCCCHHHHHHHHHHHh
Confidence            333221    224568889999999999998765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.7e-16  Score=113.00  Aligned_cols=162  Identities=18%  Similarity=0.178  Sum_probs=96.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCc--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      +.+|+|+|.+|||||||++.+++....    .....|...........++.  .+.++|++|.....       .....+
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~----~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------~~~~~~   70 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFR----ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLS   70 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCC----SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCC----CccCcceeeccccceeeccccceecccccccccccc-------cccccc
Confidence            468999999999999999999987642    22233433332222223343  47889999955431       111222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      +    ..+|++++|+|++++-|.... .++..+....+.....|++||.||+|+...  +.+..       ...+++.+.
T Consensus        71 ~----~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~--~~v~~-------~e~~~~~~~  137 (171)
T d2erxa1          71 I----SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQS-------SEAEALART  137 (171)
T ss_dssp             H----HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred             c----cceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc--ccccH-------HHHHHHHHH
Confidence            2    345999999999855454443 344444443333333489999999998654  33211       012223333


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+-.+      ...||.++.+++++++.|.+++..
T Consensus       138 ~~~~~------~e~Sak~~~~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         138 WKCAF------METSAKLNHNVKELFQELLNLEKR  166 (171)
T ss_dssp             HTCEE------EECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             cCCeE------EEEcCCCCcCHHHHHHHHHHHHHH
Confidence            22222      245788889999999988776544

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.3e-16  Score=111.96  Aligned_cols=159  Identities=20%  Similarity=0.101  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|..|||||||++.+.+......     ..+...........++  ..+.++||||....           ....
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~-----------~~~~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-----AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG-----------RWLP   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC--------------CEEEEEEEEETTEEEEEEEEECC------------------CH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-----CCeeeeeecceeeccccccceeeeeccccccc-----------ceec
Confidence            4899999999999999999998754111     1111111111111233  45789999993321           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|+|++++-|..... ++..+...... ...|+++|.||+|+...  +.+...       ...++.+..
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~--~~v~~~-------~~~~~~~~~  135 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRS--REVSVD-------EGRACAVVF  135 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGG--CCSCHH-------HHHHHHHHH
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhccccc-ccceEEEeecccchhhh--cchhHH-------HHHHHHHhc
Confidence            23446789999999998666666543 44444443222 22389999999998654  332110       112223322


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +-.+      +..||.++.+++++++.|.+.+..
T Consensus       136 ~~~~------~e~Sak~~~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         136 DCKF------IETSAALHHNVQALFEGVVRQIRL  163 (168)
T ss_dssp             TSEE------EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCEE------EEEeCCCCcCHHHHHHHHHHHHHH
Confidence            2221      345788889999999988766554

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.68  E-value=2.4e-16  Score=114.33  Aligned_cols=161  Identities=16%  Similarity=0.126  Sum_probs=98.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .++..+|+++|++|||||||++.+++.......     .|..... .........+.++|+||....           ..
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-----~t~~~~~-~~~~~~~~~~~i~D~~g~~~~-----------~~   71 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNV-ETVTYKNVKFNVWDVGGQDKI-----------RP   71 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-----EETTEEE-EEEEETTEEEEEEEESCCGGG-----------HH
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-----ceeeeeE-EEeeccceeeEEecCCCcchh-----------hh
Confidence            355689999999999999999999876542221     1222222 223356678999999994431           23


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........++++++++|.+..-+..... ++....... .....|++++.||+|+...  ....+....     +  -.+
T Consensus        72 ~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~-~~~~~piiiv~NK~Dl~~~--~~~~~i~~~-----~--~~~  141 (173)
T d1e0sa_          72 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDA--MKPHEIQEK-----L--GLT  141 (173)
T ss_dssp             HHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTC--CCHHHHHHH-----T--TGG
T ss_pred             HHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhc-ccccceeeeeeeccccccc--ccHHHHHHH-----H--HHH
Confidence            3345567889999999998555554432 333222211 1222489999999998654  333222221     0  012


Q ss_pred             hcCC-eEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      .+.. .+.+    +..||.++.+++|++++|.+.
T Consensus       142 ~~~~~~~~~----~e~SA~tg~gv~e~~~~l~~~  171 (173)
T d1e0sa_         142 RIRDRNWYV----QPSCATSGDGLYEGLTWLTSN  171 (173)
T ss_dssp             GCCSSCEEE----EECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHhCCCEE----EEeeCCCCcCHHHHHHHHHHh
Confidence            2222 2222    356888999999999998764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3e-16  Score=114.19  Aligned_cols=169  Identities=17%  Similarity=0.213  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH---
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL---   97 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~---   97 (228)
                      +|+|+|.+|+|||||||+|+|...  ........|+..............+..+|+||....     .. .......   
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~   78 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKI--SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME-----EK-RAINRLMNKA   78 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSE--EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHH-----HH-HHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc--eeeccCCCceEEEEEeeeecCCceeEeecCCCceec-----ch-hhhhhhhhhc
Confidence            699999999999999999999875  223333444444444444456667788899996531     11 1111211   


Q ss_pred             -hhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 -GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 -~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                       ......+++++++.+.. +...........+.   ...  .|.++++|++|..... ..+.....        .+....
T Consensus        79 ~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~---~~~--~~~i~v~~k~d~~~~~-~~~~~~~~--------~~~~~~  143 (179)
T d1egaa1          79 ASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLR---EGK--APVILAVNKVDNVQEK-ADLLPHLQ--------FLASQM  143 (179)
T ss_dssp             TTSCCCCEEEEEEEEETT-CCCHHHHHHHHHHH---SSS--SCEEEEEESTTTCCCH-HHHHHHHH--------HHHTTS
T ss_pred             cccchhhcceeEEEEecC-ccchhHHHHHHHhh---hcc--Cceeeeeeeeeccchh-hhhhhHhh--------hhhhhc
Confidence             12235678888888876 33333333222222   222  2688899999977541 22222222        222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcCCCCCChh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE  219 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  219 (228)
                      ...     ..++.||.++.++++|++.|.+.+++.  +++|++
T Consensus       144 ~~~-----~~~~vSA~~g~gi~~L~~~i~~~lpe~--~~~yp~  179 (179)
T d1egaa1         144 NFL-----DIVPISAETGLNVDTIAAIVRKHLPEA--THHFPE  179 (179)
T ss_dssp             CCS-----EEEECCTTTTTTHHHHHHHHHTTCCBC--CCSSCT
T ss_pred             CCC-----CEEEEeCcCCCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            211     123468889999999999999988774  445553

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.3e-16  Score=110.94  Aligned_cols=160  Identities=18%  Similarity=0.149  Sum_probs=97.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      +.+|+|+|++|||||||++.+++.....    ....+............  ...+.++|++|....        .   ..
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--------~---~~   67 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVD----EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------S---AM   67 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC----SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG--------H---HH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCC----ccCCccceeeccceeeeceeeeeeeeeccCcccc--------c---cc
Confidence            3689999999999999999999876422    22223222222111122  335788999994432        1   11


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+++++++++.+++-|..... |+..+......+ ..|++++.||+|+...  ....+.        ..++.+.
T Consensus        68 ~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~  136 (166)
T d1ctqa_          68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLAAR--TVESRQ--------AQDLARS  136 (166)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCSCC--CSCHHH--------HHHHHHH
T ss_pred             hhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccccc--cccHHH--------HHHHHHH
Confidence            112233559999999998666665543 555555543322 2389999999998654  211111        2223222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+-.      .+..||.++.+++++++.|.+.+.+
T Consensus       137 ~~~~------~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         137 YGIP------YIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HTCC------EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hCCe------EEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            2211      2345788899999999988877765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.67  E-value=1.9e-16  Score=119.89  Aligned_cols=114  Identities=17%  Similarity=0.220  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-----------------eeeeCCcEEEEEeCCCCCCCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-----------------TVLKDGQVVNVIDTPGLFDLS   83 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-----------------~~~~~~~~~~~iDtpG~~~~~   83 (228)
                      +|+|+|++++|||||+|+|++......  .....+.......                 ........+.++||||..+..
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~   84 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchhe--ecCceeeeccccccccccccccccccccceeecccccccccccccceeccc
Confidence            499999999999999999987643111  1111111100000                 011344568999999965432


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .           .+..+...+|++++|+|+..++...+...+..+...   .  .|+++++||+|....
T Consensus        85 ~-----------~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~--~p~iivlNK~D~~~~  137 (227)
T d1g7sa4          85 T-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIHG  137 (227)
T ss_dssp             T-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSTT
T ss_pred             c-----------cchhcccccceEEEEEecccCcccchhHHHHHhhcC---C--CeEEEEEECccCCCc
Confidence            1           122344578999999999989999998888887654   2  279999999998653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=3.2e-16  Score=127.88  Aligned_cols=175  Identities=17%  Similarity=0.126  Sum_probs=101.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---CcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      ...+|+|+|++|+|||||+|+|+|......+....   ..|.+...+  .......+.++||||+.......+    ++.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~--~~~~~~~~~l~DtPG~~~~~~~~~----~~~  128 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY--KHPNIPNVVFWDLPGIGSTNFPPD----TYL  128 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE--ECSSCTTEEEEECCCGGGSSCCHH----HHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee--eccCCCeEEEEeCCCcccccccHH----HHH
Confidence            34799999999999999999999965433332111   122222222  223455688999999987654333    222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccch-------hhHHHHhhccCCc
Q 027090           95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-------KTLEDFLGHECPK  167 (228)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~-------~~~~~~~~~~~~~  167 (228)
                      ...  .....|.++++.+  .+++..+.+.++.+... +    +|+++|+||+|......       ...+..++..+. 
T Consensus       129 ~~~--~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-~----k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~-  198 (400)
T d1tq4a_         129 EKM--KFYEYDFFIIISA--TRFKKNDIDIAKAISMM-K----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL-  198 (400)
T ss_dssp             HHT--TGGGCSEEEEEES--SCCCHHHHHHHHHHHHT-T----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH-
T ss_pred             HHh--hhhcceEEEEecC--CCCCHHHHHHHHHHHHc-C----CCEEEEEeCcccccchhhhcccccccHHHHHHHHHH-
Confidence            222  2335677777765  47888888877777653 2    37999999999542100       011122222111 


Q ss_pred             hHHHHHH---hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhcC
Q 027090          168 PLKEILQ---LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG  212 (228)
Q Consensus       168 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  212 (228)
                      .+.+..+   .+...+++..+...    ...++++|.+.+.+.+++..
T Consensus       199 ~~~~~l~~~~~~~~~vflvS~~~~----~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         199 NCVNTFRENGIAEPPIFLLSNKNV----CHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HHHHHHHHTTCSSCCEEECCTTCT----TSTTHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHcCCCCCCEEEecCCcc----cccCHHHHHHHHHHHhHHHH
Confidence            1222222   34445555544322    23688899999888877643

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.8e-16  Score=114.49  Aligned_cols=169  Identities=17%  Similarity=0.075  Sum_probs=101.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKE   92 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~   92 (228)
                      |...-.+|+|+|..|||||||++.++.....    .....|............  ...+.++||+|.....         
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~----~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~---------   71 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFP----EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD---------   71 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCC----CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST---------
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCC----CcCCCceeeeeeEEEeeCCceEEeecccccccchhh---------
Confidence            4455688999999999999999999876542    122223222222111122  2357899999954321         


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCC----
Q 027090           93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP----  166 (228)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~s~~~~--~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~----  166 (228)
                        .........+|++++|+|++++-|....  .++..+.....+   .|+++|.||+|+...  ............    
T Consensus        72 --~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~---~~~ilvgnK~Dl~~~--~~~~~~~~~~~~r~v~  144 (185)
T d2atxa1          72 --RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN---VPFLLIGTQIDLRDD--PKTLARLNDMKEKPIC  144 (185)
T ss_dssp             --TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCC
T ss_pred             --hhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCC---CCeeEeeeccccccc--hhhhhhhhhccccccc
Confidence              1223455678999999999866665432  355555544332   289999999998765  444433332221    


Q ss_pred             -chHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          167 -KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                       +...++.+......     .+..||.++.+++++++.+.+.+
T Consensus       145 ~~~~~~~a~~~~~~~-----~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         145 VEQGQKLAKEIGACC-----YVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             HHHHHHHHHHHTCSC-----EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCE-----EEEecCCCCcCHHHHHHHHHHHH
Confidence             12223322222111     12358888999999998776554

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.4e-16  Score=114.12  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|..|||||||++.+++......  .....+.+....... ..+  ..+.++||||-           +++....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~--~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~-----------e~~~~~~   71 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVE-INGEKVKLQIWDTAGQ-----------ERFRSIT   71 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEE-ETTEEEEEEEEEECCS-----------GGGHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccceEEEEEEE-ECCEEEEEEEEECCCc-----------hhhHHHH
Confidence            5899999999999999999987654221  112222222222222 233  34788999992           1233344


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+++++++++.++.-+.... +++..+.......  .|++++.||+|....  ..+...       ..+++.+..
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~ilvgnK~D~~~~--~~v~~~-------~~~~~~~~~  140 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAER--REVSQQ-------RAEEFSEAQ  140 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CSSCHH-------HHHHHHHHH
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhccccccc--ccEEEEEeecccccc--cchhhh-------HHHHHHHhC
Confidence            4566789999999999855454433 3444444433333  278889999997654  322110       012222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHH-HHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLV-NSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~~  210 (228)
                      .-.      .+..||.++.++++++..| .+++.+
T Consensus       141 ~~~------~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         141 DMY------YLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             TCC------EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCE------EEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            211      2346888999999998654 455554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-16  Score=113.65  Aligned_cols=158  Identities=15%  Similarity=0.111  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+|+|.+|||||||++.+.+.....    ....|..  ........ .....+.++|++|...           ....
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~----~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~   68 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFND----KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER-----------FHAL   68 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCS----SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCc----ccccccccchheeeeccCCccceeeeeccCCcce-----------eccc
Confidence            589999999999999999998766421    1222222  22212111 1234588999999432           2233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|+|.+++-|.... .+++.+........  |++++.||+|+...  +.+..       ...+++.+.
T Consensus        69 ~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~--~~ilvgnK~Dl~~~--~~v~~-------~e~~~~a~~  137 (167)
T d1z08a1          69 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEKE--RHVSI-------QEAESYAES  137 (167)
T ss_dssp             -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred             chhhccCCceeEEEEeCCchhHHHhhhhhhhhccccccccc--ceeeeccccccccc--cccch-------HHHHHHHHH
Confidence            34556788999999999866666554 35555554433332  78889999998654  33211       012223333


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .+-.+      +..||.++.+++++++.|.+.+.
T Consensus       138 ~~~~~------~e~Sak~~~~v~e~F~~l~~~i~  165 (167)
T d1z08a1         138 VGAKH------YHTSAKQNKGIEELFLDLCKRMI  165 (167)
T ss_dssp             TTCEE------EEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cCCeE------EEEecCCCcCHHHHHHHHHHHHh
Confidence            22221      34577888999999988876654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.1e-16  Score=115.02  Aligned_cols=156  Identities=17%  Similarity=0.135  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+|+|.+|||||||++.+++....    .....|....... .....  ...+.++||+|.........         
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~----~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~---------   69 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFT----KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITK---------   69 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCC----CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCH---------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC----cccccccccccceeeeeecCceeeeeeeccCCccchhhhhh---------
Confidence            58999999999999999999865542    1122222211111 11122  23578999999554432211         


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                        ...+.++++++++++++.-|..... +++.+....++.   |+++|.||+|+...  +.+..       +..+++.+.
T Consensus        70 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~iilVgnK~Dl~~~--~~v~~-------~~~~~~~~~  135 (164)
T d1z2aa1          70 --AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDI---PTALVQNKIDLLDD--SCIKN-------EEAEGLAKR  135 (164)
T ss_dssp             --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSC---CEEEEEECGGGGGG--CSSCH-------HHHHHHHHH
T ss_pred             --hhhccCceEEEEEeccchhhhhhcccccccccccCCCc---eEEEeeccCCcccc--eeeee-------hhhHHHHHH
Confidence              1234679999999998655555443 566665554443   89999999998654  33211       112233333


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      .+-.+      +..||.++.+++++++.|.+.+
T Consensus       136 ~~~~~------~e~Sak~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         136 LKLRF------YRTSVKEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             HTCEE------EECBTTTTBSSHHHHHHHHHHH
T ss_pred             cCCEE------EEeccCCCcCHHHHHHHHHHHH
Confidence            32222      3457888899999998775543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.1e-16  Score=114.07  Aligned_cols=169  Identities=18%  Similarity=0.079  Sum_probs=101.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      +++..+|+|+|.+|||||||++.+++.....    ....|...........++  ..+.++|++|-..           +
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~----~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~   66 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPG----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED-----------Y   66 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCS----SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG-----------G
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCc----ccccceeeceeeeeeccCcceEEEeeccccccc-----------c
Confidence            3556899999999999999999998776421    222232222221111233  3478899998322           2


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC--CchH
Q 027090           94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC--PKPL  169 (228)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~s~~~~~--~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~--~~~~  169 (228)
                      ..........+|++++++|+++.-|.....  +...+..... .  .|++||.||+|+...  +..........  ....
T Consensus        67 ~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~~  141 (183)
T d1mh1a_          67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY  141 (183)
T ss_dssp             TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--SCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCH
T ss_pred             hhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCC-C--CcEEEEeecccchhh--hhhhhhhhhccccchhh
Confidence            223334567889999999998665655432  4444444322 2  389999999998765  44433222211  2223


Q ss_pred             HHHHHhc---CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          170 KEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       170 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .+....+   ....+     +..||.++.+++++++.+.+.+-
T Consensus       142 ~~~~~~a~~~~~~~~-----~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         142 PQGLAMAKEIGAVKY-----LECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HHHHHHHHHTTCSEE-----EECCTTTCTTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCceE-----EEcCCCCCcCHHHHHHHHHHHHc
Confidence            3333322   21111     23578888999999987776553

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.3e-15  Score=107.48  Aligned_cols=159  Identities=18%  Similarity=0.143  Sum_probs=93.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|.+|||||||++.+++.....    ....|...........++  ..+.++|++|.....       .....+
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~----~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------~~~~~~   71 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIE----KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRDLY   71 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCC----ccCCceeeeeeeeeecCcceEeeccccCCCccccc-------cchHHH
Confidence            4689999999999999999998776422    222232222222222233  357889999954321       111222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                          ...+++++++++.+++-|..... ++..+...... ...|++||.||+|+...  ..+...       ......+.
T Consensus        72 ----~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~--~~~~~~-------~~~~~~~~  137 (167)
T d1kaoa_          72 ----IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESE--REVSSS-------EGRALAEE  137 (167)
T ss_dssp             ----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred             ----hhcccceeeeeeecchhhhhhhhchhhhhhhhccC-CCCCEEEEEEccchhhc--ccchHH-------HHHHHHHH
Confidence                23459999999998666665543 44444333222 22389999999997643  222110       01122222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      .+-.      .+..||.++.+++++++.|.+.+
T Consensus       138 ~~~~------~~e~Sak~g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         138 WGCP------FMETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             HTSC------EEEECTTCHHHHHHHHHHHHHHH
T ss_pred             cCCe------EEEECCCCCcCHHHHHHHHHHHH
Confidence            2211      23458889999999998876654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.6e-16  Score=111.75  Aligned_cols=159  Identities=17%  Similarity=0.128  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      +|+|+|..|||||||++.+++.......  ..+.+.......... .....+.++|++|....           ......
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----------~~~~~~   68 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF-----------RSLIPS   68 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------GGGHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCCcc--ccceeeeccceeeccCCCceeeeecccCCcchh-----------ccchHH
Confidence            7999999999999999999877642211  112222222122111 12345789999994321           111222


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN  178 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (228)
                      ....+++++++++..+..|.... .++..+........  |+++|.||+|+...  .....  +     ...++.+..+-
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~--~~~~~--~-----~~~~~~~~~~~  137 (164)
T d1yzqa1          69 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADK--RQVSI--E-----EGERKAKELNV  137 (164)
T ss_dssp             HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGG--CCSCH--H-----HHHHHHHHTTC
T ss_pred             HhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCc--eEEEEecccchhhh--hhhhH--H-----HHHHHHHHcCC
Confidence            34577999999999866555543 35555554443333  79999999998644  22110  0     12223333222


Q ss_pred             eEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      .+      +..||.++.+++++++.|.+.++
T Consensus       138 ~~------~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         138 MF------IETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             EE------EECCTTTCTTHHHHHHHHHHHSC
T ss_pred             EE------EEecCCCCcCHHHHHHHHHHhhC
Confidence            21      34588889999999999888764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.65  E-value=1.1e-15  Score=110.34  Aligned_cols=161  Identities=19%  Similarity=0.154  Sum_probs=94.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      -.+|+|+|..|||||||++.+++...    ......|....+......++  ..+.++|++|..+.        ..   .
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f----~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~--------~~---~   68 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEF----VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--------AA---I   68 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC----CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C--------HH---H
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCC----CcccCCccccccccccccccccccccccccccccch--------hh---h
Confidence            36899999999999999999887654    12223333332222222333  35788999995432        11   1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+|++++|++..+.-|.... .++..+......+ ..|+++|.||+|+...  +.+..       ....++.+.
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piiivgnK~Dl~~~--~~v~~-------~~~~~~~~~  138 (168)
T d1u8za_          69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE-NVPFLLVGNKSDLEDK--RQVSV-------EEAKNRADQ  138 (168)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCT-TSCEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred             hhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCC-CCcEEEEecccccccc--ccccH-------HHHHHHHHH
Confidence            11223355999999999866566554 3555554443322 2389999999997643  32210       012222222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+-.+      +..||.++.+++++++.|.+.+..
T Consensus       139 ~~~~~------~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         139 WNVNY------VETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HTCEE------EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCeE------EEEcCCCCcCHHHHHHHHHHHHHC
Confidence            22121      345788889999999887665543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.8e-16  Score=112.46  Aligned_cols=157  Identities=16%  Similarity=0.135  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|.+|+|||||++.+++........  ...+......... .++  ..+.++||||....           ....
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~i~D~~g~~~~-----------~~~~   70 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIE-VSGQKIKLQIWDTAGQERF-----------RAVT   70 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCT--TSCCCCEEEEEEE-ETTEEEEEEEEECTTGGGT-----------CHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc--ccccccceeEEEE-ECCEEEEEEEeccCCchhH-----------HHHH
Confidence            589999999999999999998766422211  1222222222211 233  36889999993322           1111


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++++++++.-|.... .++..+.......  .|++++.||+|+...  .....       +....+.+..
T Consensus        71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~~~~-------~~~~~~~~~~  139 (166)
T d1z0fa1          71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQ--RDVTY-------EEAKQFAEEN  139 (166)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG--CCSCH-------HHHHHHHHHT
T ss_pred             HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchhh--cccHH-------HHHHHHHHHc
Confidence            2223467999999999855554443 3455554443333  378889999997654  22210       0122233322


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      .-.      .+..||.++.+++++++.|.+.
T Consensus       140 ~~~------~~e~Saktg~~v~e~f~~i~~~  164 (166)
T d1z0fa1         140 GLL------FLEASAKTGENVEDAFLEAAKK  164 (166)
T ss_dssp             TCE------EEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCE------EEEEeCCCCCCHHHHHHHHHHH
Confidence            211      1345788889999999877654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6e-15  Score=106.55  Aligned_cols=161  Identities=20%  Similarity=0.171  Sum_probs=93.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ..+|+|+|.+|||||||++.+++.....    ....|...........++  ..+.++|++|..+..       .....+
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~----~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~   73 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVT----DYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG-------AMREQY   73 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCS----SCCTTCCEEEEEEEEETTEEEEEEEEECC----CC-------HHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCc----ccCcccccceeeeeeeccccccccccccccccccc-------cccccc
Confidence            3689999999999999999998765421    112222222221122233  358899999966532       111122


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      +    ..+|++++|+|.+..-|..... ++..+....... ..|++++.||+|+...  ..+..       ....++.+.
T Consensus        74 ~----~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~--~~v~~-------~~~~~~~~~  139 (171)
T d2erya1          74 M----RTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDHQ--RQVTQ-------EEGQQLARQ  139 (171)
T ss_dssp             H----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTTS--CSSCH-------HHHHHHHHH
T ss_pred             c----cccceEEEeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhhh--ccchH-------HHHHHHHHH
Confidence            2    3459999999998555555443 444444333222 2388999999998644  22211       012233333


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+-.+      +..||.++.+++++++.|.+.+.+
T Consensus       140 ~~~~~------~e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         140 LKVTY------MEASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             TTCEE------EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCEE------EEEcCCCCcCHHHHHHHHHHHHHH
Confidence            32222      235788889999999999888765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-15  Score=110.35  Aligned_cols=157  Identities=15%  Similarity=0.052  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE--eee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+|+|.+|+|||||++.+++....    .....|......  ... ......+.++||||.           ......
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~----~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~-----------~~~~~~   68 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFE----KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ-----------EKFGGL   68 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC---------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTH-----------HHHSSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC----cccccceeccccccccccccccccccccccccc-----------ccccee
Confidence            58999999999999999999876542    122223222221  111 112346899999991           222223


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......++++++++|++++-|.... .++..+.....+   .|+++|.||+|+...  ....+         .......
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~---~piilvgnK~Dl~~~--~~~~~---------~~~~~~~  134 (170)
T d1i2ma_          69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN---IPIVLCGNKVDIKDR--KVKAK---------SIVFHRK  134 (170)
T ss_dssp             GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCS---CCEEEEEECCCCSCS--CCTTT---------SHHHHSS
T ss_pred             cchhcccccchhhccccccccccchhHHHHHHHhhccCC---Cceeeecchhhhhhh--hhhhH---------HHHHHHH
Confidence            34456788999999999866565543 355555444333   389999999998654  32211         1112221


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .+-.      .+..||.++.+++++++.|.+.+..+
T Consensus       135 ~~~~------~~e~Sak~~~~v~e~f~~l~~~l~~~  164 (170)
T d1i2ma_         135 KNLQ------YYDISAKSNYNFEKPFLWLARKLIGD  164 (170)
T ss_dssp             CSSE------EEEEBTTTTBTTTHHHHHHHHHHHTC
T ss_pred             cCCE------EEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            1111      13457888899999998887766543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-15  Score=109.65  Aligned_cols=160  Identities=18%  Similarity=0.138  Sum_probs=94.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      +.+|+|+|..|||||||++.+++...    ......|....+.......+  ..+.++|++|....        .....+
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f----~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~~~   69 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRF----IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT--------IQREGH   69 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCC----CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC--------HHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC----CCccCCceeccccccccccccceEEEEeeccccccc--------ccchhh
Confidence            47999999999999999999997654    22334444433332222333  35889999996532        111122


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      +    ..+++++++++++++-|...... ......... ....|+++|.||+|+...  +.+.       .+...++.+.
T Consensus        70 ~----~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~--r~V~-------~~e~~~~a~~  135 (168)
T d2atva1          70 M----RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHS--RQVS-------TEEGEKLATE  135 (168)
T ss_dssp             H----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGG--CCSC-------HHHHHHHHHH
T ss_pred             h----cccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhh--ccCc-------HHHHHHHHHH
Confidence            2    24599999999986666655443 333333222 122389999999998644  3221       0112233333


Q ss_pred             cCCeEEEeeCCCcccccchH-HHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~~~  210 (228)
                      .+-.+      +..||.++. ++++++..|.+.+..
T Consensus       136 ~~~~~------~e~Saktg~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         136 LACAF------YECSACTGEGNITEIFYELCREVRR  165 (168)
T ss_dssp             HTSEE------EECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             hCCeE------EEEccccCCcCHHHHHHHHHHHHHH
Confidence            22221      234666665 699999877665543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5.2e-16  Score=111.86  Aligned_cols=159  Identities=19%  Similarity=0.119  Sum_probs=95.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      ..+|+|+|.+|||||||++.+......    .....|........ ....  ...+.++||+|.....           .
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-----------~   68 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFD----PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-----------A   68 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC----TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------G
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCC----cccccccccccccccccccccccceeeeecCCchhhh-----------H
Confidence            468999999999999999999876642    22223322222211 1122  2346789999944321           1


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........+++++++++++++-+....+ ++..+.......  .|+++|.||+|+...  +.+..       +..+++.+
T Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~-------~~~~~~~~  137 (167)
T d1z0ja1          69 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDV--REVME-------RDAKDYAD  137 (167)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGG--CCSCH-------HHHHHHHH
T ss_pred             HHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhccc--cchhH-------HHHHHHHH
Confidence            1122345779999999998655555544 343444433333  489999999998643  22211       01223333


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ..+-.+      +..||.++.++++++..|.+.++
T Consensus       138 ~~~~~~------~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         138 SIHAIF------VETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             HTTCEE------EECBTTTTBSHHHHHHHHHHHCC
T ss_pred             HcCCEE------EEEecCCCCCHHHHHHHHHHhCC
Confidence            322221      34588889999999998877653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=7.6e-16  Score=113.71  Aligned_cols=162  Identities=17%  Similarity=0.137  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .+|+|+|+.|||||||++.+++.......  ............... .....+.++||||......           ...
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~-----------~~~   73 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-----------ITS   73 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-----------CCG
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCc--CCccceeEEEEEEEEeeEEEEEEEEECCCchhhHH-----------HHH
Confidence            58999999999999999999876542111  111222222222221 1233588899999543221           122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      .....+++++++++.+...+..... +...+.......  .|++++.||.|....  ..+....       .....+.-.
T Consensus        74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~--~~~~~~~-------~~~~~~~~~  142 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDK--RVVEYDV-------AKEFADANK  142 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTT--CCSCHHH-------HHHHHHHTT
T ss_pred             HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCC--ceEEEEEeccccccc--cchhHHH-------HhhhhhccC
Confidence            3456789999999998555555544 334444333333  389999999998764  3222111       111222211


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      ..      .+..||.++.+++++++.+.+.+.++
T Consensus       143 ~~------~~e~SAk~g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         143 MP------FLETSALDSTNVEDAFLTMARQIKES  170 (194)
T ss_dssp             CC------EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cc------eEEEecCcCccHHHHHHHHHHHHHHH
Confidence            11      13457788899999999887776654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.1e-16  Score=112.34  Aligned_cols=158  Identities=16%  Similarity=0.146  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|.+|||||||++.+++.......  ....+......... .++  ..+.++|+||-......           .
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~e~~~~~-----------~   70 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRI-----------T   70 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCC-----------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccceeeeEEEE-ECCEEEEEEecccCCcHHHHHH-----------H
Confidence            58999999999999999999876542221  11222222222222 333  35789999994322211           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......++++++|++.++.-|.... +++..+........  |+++|.||+|+...  .......       .....+..
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~--piilvgnK~Dl~~~--~~~~~~~-------~~~~~~~~  139 (175)
T d2f9la1          71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI--VIMLVGNKSDLRHL--RAVPTDE-------ARAFAEKN  139 (175)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGG--CCSCHHH-------HHHHHHHT
T ss_pred             HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCC--cEEEEEeeeccccc--ccchHHH-------HHHhhccc
Confidence            1223567999999999855555543 35555655544333  89999999998654  2111100       11222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ...+      +..||.++.+++++++.+.+.+
T Consensus       140 ~~~~------~e~Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         140 NLSF------IETSALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             TCEE------EECCTTTCTTHHHHHHHHHHHH
T ss_pred             CceE------EEEecCCCcCHHHHHHHHHHHH
Confidence            2222      3457778899999987665543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.8e-16  Score=112.33  Aligned_cols=161  Identities=17%  Similarity=0.127  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .+|+|+|..|||||||++.|++........  ............. ......+.++|++|....           .....
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~~   73 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQE--STIGAAFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSLAP   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccc--cccccccccceeeccceEEEEEeccCCCchhh-----------hhhHH
Confidence            589999999999999999998765422111  1122221111111 112245889999994321           11122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      .....+++++++++..+.-+..... +...+........  |++++.||+|+...  +.+..       +..+++.+...
T Consensus        74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~--~~v~~-------e~~~~~~~~~~  142 (170)
T d1r2qa_          74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANK--RAVDF-------QEAQSYADDNS  142 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGG--CCSCH-------HHHHHHHHHTT
T ss_pred             HHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCc--eEEeeccccccccc--ccccH-------HHHHHHHHhcC
Confidence            2345779999999998655555443 3444444433333  78999999997654  33221       01222333222


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      -.      .+..||.++.+++++++.|.+.+.+
T Consensus       143 ~~------~~e~SAk~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         143 LL------FMETSAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             CE------EEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred             CE------EEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            11      1245888889999999988765543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=3.8e-16  Score=112.42  Aligned_cols=159  Identities=14%  Similarity=0.139  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+++|.+|||||||++.+++......-  ..+.+.+....... ..+  ..+.++||||-.....           ..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~--~~t~~~~~~~~~i~-~~~~~~~~~i~Dt~G~~~~~~-----------~~   68 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRT-----------IT   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSC-----------CC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcc--CCccceeEEEEEEE-ECCEEEEEEEEECCCchhhHH-----------HH
Confidence            68999999999999999999877642211  11222222222222 223  3577899999432211           11


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ....+.+++++++++..+.-|....+. ..........  ..|++++.++.|....  ....+..+.        +....
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~--~~~~~~~~~--------~~~~~  136 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VVTADQGEA--------LAKEL  136 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTC--CSCHHHHHH--------HHHHH
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC--cceeeeecchhhhhhh--hhhHHHHHH--------HHHhc
Confidence            123357799999999986555544442 2333332222  2367888999998755  333332222        22222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      +-      ..+..|+.++.+++++++.|.+.+.+
T Consensus       137 ~~------~~~~~Sa~~~~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         137 GI------PFIESSAKNDDNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             TC------CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CC------eEEEECCCCCCCHHHHHHHHHHHHHh
Confidence            21      22345778889999999999888765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-15  Score=108.57  Aligned_cols=160  Identities=16%  Similarity=0.115  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|+.|||||||++.+++...... ........+....... ..+  ..+.++||||...           .....
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~e~-----------~~~~~   73 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLD-VDGVKVKLQMWDTAGQER-----------FRSVT   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEE-ETTEEEEEEEEECCCC------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc-cccceeeeeeEEEEEE-ecCcEEEEEEEECCCchh-----------hHHHH
Confidence            4899999999999999999876653211 1111112222222222 233  3578999999322           22233


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|+++++++.+..-|..... ++..+.......  .|++++.||+|....  ..+...       ....+.+..
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~d~~~~--~~v~~~-------~~~~~~~~~  142 (170)
T d2g6ba1          74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHE--RVVKRE-------DGEKLAKEY  142 (170)
T ss_dssp             -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSC--CCSCHH-------HHHHHHHHH
T ss_pred             HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCC--ceEEEEEeeechhhc--ccccHH-------HHHHHHHHc
Confidence            34456789999999998555544433 333333333323  378889999998765  332210       122233332


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      +-.      .+..||.++.+++++++.|.+.+.
T Consensus       143 ~~~------~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         143 GLP------FMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             TCC------EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCE------EEEEeCCCCcCHHHHHHHHHHHcC
Confidence            212      234577788999999988876654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.8e-15  Score=109.62  Aligned_cols=166  Identities=17%  Similarity=0.095  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|..|+|||||++.+.+....    .....|............+  ..+.++||+|-..           +....
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~~   68 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFP----SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-----------YDRLR   68 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GTTTG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC----CCcCCceeeecceeEeeCCceeeeeccccccchh-----------hhhhh
Confidence            68999999999999999999877642    2222333322222222232  3589999999432           12223


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCC-----chHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPLK  170 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~--~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~-----~~~~  170 (228)
                      ...+..+|++++++|++++-|.....  ++..+... ...  .|+++|.||+|+...  ....+.+.....     +..+
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~~i~lvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~  143 (191)
T d2ngra_          69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPK--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETAE  143 (191)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTT--CCEEEEEECGGGGGC--HHHHHHHHTTTCCCCCHHHHH
T ss_pred             hhcccccceeecccccchHHHHHHHHHHHHHHHhhc-CCC--CceEEEecccccccc--chhhhhhhhcccccccHHHHH
Confidence            34567889999999999666665543  34444433 323  289999999998765  443333322121     1222


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ++.+......     .+..||.++.+++++++.+...+.+
T Consensus       144 ~~~~~~~~~~-----~~e~SAk~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         144 KLARDLKAVK-----YVECSALTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             HHHHHTTCSC-----EEECCTTTCTTHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCCe-----EEEEeCCCCcCHHHHHHHHHHHHhc
Confidence            3333322211     1235778889999999877665544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.8e-15  Score=107.90  Aligned_cols=159  Identities=17%  Similarity=0.122  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eee--CCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+|+|..|||||||++.+++....    .....|........ ...  ....+.++||||..           ++...
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~   70 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFK----DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE-----------RFRSV   70 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCC----TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG-----------GGHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC----cccccccccceeeEEEEecCcceeEEEEECCCch-----------hhhhh
Confidence            58999999999999999999876541    11122222221111 112  23358899999922           22233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHh
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL  175 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (228)
                      .......+++++++++.+..-+.... .++..+.......  .|++++.||+|....  ......       ....+.+.
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~--~~~~~~-------~~~~~~~~  139 (174)
T d2bmea1          71 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDAD--REVTFL-------EASRFAQE  139 (174)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred             HHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEecccccch--hchhhh-------HHHHHHHh
Confidence            44556788999999999854444333 2333343333322  389999999997543  221110       11122222


Q ss_pred             cCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ..-.      .+..||.++.+++++++.+.+.+.+
T Consensus       140 ~~~~------~~e~Sak~~~gi~e~f~~l~~~i~~  168 (174)
T d2bmea1         140 NELM------FLETSALTGENVEEAFVQCARKILN  168 (174)
T ss_dssp             TTCE------EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCE------EEEeeCCCCcCHHHHHHHHHHHHHH
Confidence            1111      1345778889999999877665543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=3.5e-15  Score=110.80  Aligned_cols=119  Identities=15%  Similarity=0.197  Sum_probs=82.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC---cccccC------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK---AFKASA------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL   82 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~---~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   82 (228)
                      +-.+|+++|+.++|||||+++|+...   ......            ..+..|.+....... +++..+.++||||..+.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~-~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEE-eCCeEEEEEeCCCchhh
Confidence            34799999999999999999996321   000000            001345444444333 67888999999996542


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                             ..+..+.+    ..+|.+++|+++.++...++++.+.++... +-+   ++++++||+|....
T Consensus        81 -------~~~~~~~~----~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi~---~iiv~iNK~D~~~~  135 (204)
T d2c78a3          81 -------IKNMITGA----AQMDGAILVVSAADGPMPQTREHILLARQV-GVP---YIVVFMNKVDMVDD  135 (204)
T ss_dssp             -------HHHHHHHH----TTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TCC---CEEEEEECGGGCCC
T ss_pred             -------HHHHHHHH----HHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEEecccCCC
Confidence                   23333333    466999999999999999998888888765 322   57888999998754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.5e-16  Score=112.39  Aligned_cols=161  Identities=12%  Similarity=0.067  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee-eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .+|+|+|++|||||||++.+++........  ...+......... ......+.++|++|........           .
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----------~   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT-----------R   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC-----------H
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcc--cceeeccceeeeeeeeeEEEEEeecccCccchhhHH-----------H
Confidence            589999999999999999998765422211  1122221111111 1123458999999955433211           1


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      .....+|+++++++.++.-|.... +++..+........  |++|+.||+|....  +.....       ....+.+...
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~--piilv~nK~D~~~~--~~~~~~-------~~~~~a~~~~  139 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLIGNKSDLESR--RDVKRE-------EGEAFAREHG  139 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGG--CCSCHH-------HHHHHHHHHT
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCC--eEEEEecCCchhhh--hhhHHH-------HHHHHHHHcC
Confidence            223467999999999866565544 45555655544443  89999999997643  222110       1222222222


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      -.+      ...||.++.++++++..+.+.+..
T Consensus       140 ~~~------~e~Sa~tg~~V~e~f~~i~~~i~~  166 (173)
T d2a5ja1         140 LIF------METSAKTACNVEEAFINTAKEIYR  166 (173)
T ss_dssp             CEE------EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CEE------EEecCCCCCCHHHHHHHHHHHHHH
Confidence            121      345788889999999877665443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-14  Score=104.48  Aligned_cols=164  Identities=20%  Similarity=0.161  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|..|+|||||++.+++.......  ....+...........+  ...+.++|+|+...     .   .++  ..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g-----~---e~~--~~   71 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDS--DCEVLGEDTYERTLMVDGESATIILLDMWENKG-----E---NEW--LH   71 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCC--C---CCTTEEEEEEEETTEEEEEEEECCTTTTH-----H---HHH--HH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccc--cccceeeecceeeeccCCceeeeeeeccccccc-----c---ccc--cc
Confidence            58999999999999999999876531111  11111111111111122  33467889886321     0   122  22


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++|+|+++.-|..... +...+....+ ....|+++|.||+|+...  +.+..       ...+++.+..
T Consensus        72 ~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~--~~v~~-------~~~~~~a~~~  141 (172)
T d2g3ya1          72 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRC--REVSV-------SEGRACAVVF  141 (172)
T ss_dssp             HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGG--CCSCH-------HHHHHHHHHH
T ss_pred             cccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEecccccccc--ccccH-------HHHHHHHHHc
Confidence            34567889999999998655555443 3333332222 223489999999998654  32211       0122232222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      +-.+      +..||.++.+++++++.|.+.+..+
T Consensus       142 ~~~~------~e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         142 DCKF------IETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             TCEE------EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCeE------EEEeCCCCcCHHHHHHHHHHHHHHc
Confidence            2121      2357888899999999887766553

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=7.1e-16  Score=111.79  Aligned_cols=158  Identities=14%  Similarity=0.097  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcce--eeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .+|+|+|..|||||||++.|++.....    ....|.  ........ .++  ..+.++||||..           .+..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~e-----------~~~~   70 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNS----TFISTIGIDFKIRTIE-LDGKRIKLQIWDTAGQE-----------RFRT   70 (173)
T ss_dssp             EEEEEECCCCC--------------------CHHHHHCEEEEEEEEE-ETTEEEEEEEEEC-------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCC----ccCccccceEEEEEEE-ECCEEEEEEEEECCCch-----------hhHH
Confidence            489999999999999999998765421    112222  22222222 233  357889999932           2222


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ......+.++++++|+|++++.|..... ++..+.......  .|+++|.||.|....  .......       ......
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~--~~~~~~~-------~~~~~~  139 (173)
T d2fu5c1          71 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDK--RQVSKER-------GEKLAL  139 (173)
T ss_dssp             -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSC--CCSCHHH-------HHHHHH
T ss_pred             HHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhh--cccHHHH-------HHHHHH
Confidence            3334567889999999998666665543 444444443333  378899999998764  2221100       111222


Q ss_pred             hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ...-.+      +..|+.++.+++++++.|.+.+.+
T Consensus       140 ~~~~~~------~e~Sa~~g~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         140 DYGIKF------METSAKANINVENAFFTLARDIKA  169 (173)
T ss_dssp             HHTCEE------EECCC---CCHHHHHHHHHHHHHH
T ss_pred             hcCCEE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            222121      345777889999999888777765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.61  E-value=1.3e-14  Score=105.16  Aligned_cols=164  Identities=14%  Similarity=0.053  Sum_probs=94.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ++..+|+|+|.+|||||||++.|.+..........  ..   .... .......+.++|+++......           .
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~--~~---~~~~-~~~~~~~~~~~d~~~~~~~~~-----------~   75 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI--GS---NVEE-IVINNTRFLMWDIGGQESLRS-----------S   75 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS--CS---SCEE-EEETTEEEEEEECCC----CG-----------G
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc--ce---eEEE-EeecceEEEEecccccccccc-----------c
Confidence            45689999999999999999999987653222111  11   1111 224567789999988443221           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ........++++++++.++..+....................|++++.||+|....  .......+.     . ......
T Consensus        76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~i~~~-----~-~~~~~~  147 (177)
T d1zj6a1          76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQF-----L-KLTSIK  147 (177)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----H-TGGGCC
T ss_pred             hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--CcHHHHHHH-----H-HHHhhH
Confidence            11223456999999999866666554322222221122223489999999998654  333222221     0 000111


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ...+.    ....||.++.++++++++|.+.++
T Consensus       148 ~~~~~----~~~~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         148 DHQWH----IQACCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             SSCEE----EEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             hcCCE----EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            11111    234688899999999999987653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=3.7e-17  Score=122.82  Aligned_cols=162  Identities=14%  Similarity=0.095  Sum_probs=87.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHH------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEF------   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~------   88 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|.    +........ ........-.+++.|.++...+..++      
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~----I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~   98 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD----LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK   98 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEESSSCCTTSCGGGTCEEEECSSCCC---------------
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCE----EEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHH
Confidence            3567899999999999999999999998766651    111110000 00001112334444444333222211      


Q ss_pred             --------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           89 --------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        89 --------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                              ..+.....+...    +.--+.-.....+|+|++|++.++++++.+|.   +++   |++.+|....  .++
T Consensus        99 ~~~~~~~~~~~~v~~~l~~~----~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~---illlDEPts~LD~~~~--~~i  169 (232)
T d2awna2          99 LAGAKKEVINQRVNQVAEVL----QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS---VFLLDEPLSNLDAALR--VQM  169 (232)
T ss_dssp             ------CHHHHHHHHHHHHC-------------------------CHHHHHHTCCS---EEEEESTTTTSCHHHH--HHH
T ss_pred             HcCCCHHHHHHHHHHHHHhC----CChhhhhCChhhCCHHHHHHHHHHHHHhcCCC---EEEEcCCCCCCCHHHH--HHH
Confidence                    111122222211    11112222225799999999999999999884   555   8899998877  777


Q ss_pred             HHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          158 EDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       158 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      .+.+.++.          +|++.++...|++.+++.+|.+...
T Consensus       170 ~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~  212 (232)
T d2awna2         170 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV  212 (232)
T ss_dssp             HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            77665542          8999999999999999999987644

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.61  E-value=2.1e-17  Score=124.86  Aligned_cols=165  Identities=13%  Similarity=0.104  Sum_probs=106.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-------eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-------VLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+.........       .......-.+.+.|.++...+..++
T Consensus        26 i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG----~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~en  101 (240)
T d1g2912          26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG----QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDN  101 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHH
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCC----EEEECCEEecccchhhhcccccccceecccchhhcchhhhhHh
Confidence            346789999999999999999999999876655    22222211110       0001223456677887765544333


Q ss_pred             HHHHHHHHHhhcc----CCccEEEEEE-------eCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccch
Q 027090           89 VGKEIVKCLGMAK----DGIHAFLVVF-------SVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHE  154 (228)
Q Consensus        89 ~~~~~~~~~~~~~----~~~~~il~v~-------~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~  154 (228)
                      + ...........    +.+..++-.+       .....+|+|++|++.++++++.+|.   +++   |++.+|....  
T Consensus       102 i-~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~---iLllDEPt~~LD~~~~--  175 (240)
T d1g2912         102 I-AFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ---VFLMDEPLSNLDAKLR--  175 (240)
T ss_dssp             H-HHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS---EEEEECTTTTSCHHHH--
T ss_pred             h-hhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC---EEEecCCCcccCHHHH--
Confidence            2 11111110000    0000001001       1114699999999999999999884   666   8899999877  


Q ss_pred             hhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          155 KTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ..+.+.+.++.          +|++.++...|++.+++.+|.+...
T Consensus       176 ~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~  221 (240)
T d1g2912         176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV  221 (240)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            78887776543          8999999999999999999987654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.61  E-value=8.8e-15  Score=104.04  Aligned_cols=157  Identities=11%  Similarity=0.031  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+|+|+|++|||||||+|.|++.........    + ..... ........+.++|+||....           ......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~----~-~~~~~-~~~~~~~~~~~~d~~g~~~~-----------~~~~~~   63 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT----I-GFNVE-TVEYKNISFTVWDVGGQDKI-----------RPLWRH   63 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCC----S-SCCEE-EEECSSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccc----e-eeEEE-EEeeeeEEEEEecCCCcccc-----------hhhhhh
Confidence            3799999999999999999987765222111    1 11111 12245667899999994431           111222


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHH-H-HHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcC
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEET-A-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD  177 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~-~-l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
                      .....++++++++..+..+..... + .+.+....  ....|++++.||.|....  ....+....       .....+.
T Consensus        64 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~k~d~~~~--~~~~~i~~~-------~~~~~~~  132 (160)
T d1r8sa_          64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE--LRDAVLLVFANKQDLPNA--MNAAEITDK-------LGLHSLR  132 (160)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTC--CCHHHHHHH-------TTGGGCS
T ss_pred             hhccceeEEEEEEecChHHHHHHHHHHHHHHHhhc--ccCceEEEEeeccccccc--ccHHHHHHH-------HHHHHHh
Confidence            345679999999998555554432 2 22222221  122378889999998754  322221111       0111222


Q ss_pred             CeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ...+.   ..+.||.++.++++++++|.+.
T Consensus       133 ~~~~~---~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         133 HRNWY---IQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             SCCEE---EEECBTTTTBTHHHHHHHHHHH
T ss_pred             hCCCE---EEEeECCCCCCHHHHHHHHHhc
Confidence            21111   2356889999999999988654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.7e-15  Score=109.15  Aligned_cols=159  Identities=14%  Similarity=0.122  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeeee-----------CCcEEEEEeCCCCCCCCCCc
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLK-----------DGQVVNVIDTPGLFDLSAGS   86 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~-----------~~~~~~~iDtpG~~~~~~~~   86 (228)
                      .+|+|+|.+|||||||++.+++......    ...+....  .......           ....+.++||||        
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G--------   73 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--------   73 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES--------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCc----cCCcccceeeEEEEEEecccccccccccceEEeccccCCc--------
Confidence            5899999999999999999997654211    11121111  1111111           123578999999        


Q ss_pred             HHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC--ccccccEEEEEeCCCCCccchhhHHHHhhcc
Q 027090           87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE  164 (228)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~--~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~  164 (228)
                         .+++..........++++++|+++++.-+.....  .+......  .....|+++|.||.|+...  +++..     
T Consensus        74 ---~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~v~~-----  141 (186)
T d2f7sa1          74 ---QERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR--NWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE-----  141 (186)
T ss_dssp             ---HHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHH--HHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH-----
T ss_pred             ---chhhHHHHHHHHhcCCEEEEEEeccccccceeee--eccchhhhhccCCCceEEEEeeeccchhh--hcchH-----
Confidence               1233333334456889999999998544444333  12222211  1122378889999998654  33211     


Q ss_pred             CCchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                        ....++.+..+-.+      +..||.++.+++++++.|.+.+.+
T Consensus       142 --~e~~~~~~~~~~~~------~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         142 --RQARELADKYGIPY------FETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             --HHHHHHHHHTTCCE------EEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHcCCEE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence              11233444433222      345777889999999988876654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.2e-15  Score=108.62  Aligned_cols=163  Identities=14%  Similarity=0.067  Sum_probs=93.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ..+|+|+|..|+|||||++.|++.......  ....+.......... .....+.++||||.......           .
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~   73 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL-----------T   73 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------H
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCcc--ccceeecceeEEEEEeccccEEEEEECCCchhhHHH-----------H
Confidence            478999999999999999999876642211  112222222222221 12345899999995443211           1


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      ......+|++++++++++.-+..... ++..+... ......|++++.||.|....  ......        ..++.+..
T Consensus        74 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~~~--~v~~~~--------~~~~~~~~  142 (177)
T d1x3sa1          74 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKENR--EVDRNE--------GLKFARKH  142 (177)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSSSC--CSCHHH--------HHHHHHHT
T ss_pred             HHHHhcCCEEEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeeccccccc--cccHHH--------HHHHHHHC
Confidence            12234779999999988544433322 33333222 11222477889999997654  211111        22233333


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .-.      .+..||.++.+++++++.+.+.+.++
T Consensus       143 ~~~------~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         143 SML------FIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             TCE------EEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             CCE------EEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            322      12357778899999998887766653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=4.1e-17  Score=123.02  Aligned_cols=163  Identities=14%  Similarity=0.086  Sum_probs=101.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHH-----
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEF-----   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~-----   88 (228)
                      .-+++..++|+|+||||||||+++|+|...+.+|    .+......... .......-.+.+.|+++...+..++     
T Consensus        28 ~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG----~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~  103 (239)
T d1v43a3          28 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPL  103 (239)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTC
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCC----EEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHH
Confidence            3456679999999999999999999999886665    22221111100 0011112355566665544332221     


Q ss_pred             ---------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhh
Q 027090           89 ---------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKT  156 (228)
Q Consensus        89 ---------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~  156 (228)
                               ..+.....+...  +...  +.-.....+|+|++|++.++++++.+|.   +++   |++.+|....  ..
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSGGq~QRvaiAraL~~~P~---iLllDEPts~LD~~~~--~~  174 (239)
T d1v43a3         104 KIKKFPKDEIDKRVRWAAELL--QIEE--LLNRYPAQLSGGQRQRVAVARAIVVEPD---VLLMDEPLSNLDAKLR--VA  174 (239)
T ss_dssp             C--CCCHHHHHHHHHHHHHHT--TCGG--GTTSCTTTCCSSCHHHHHHHHHHTTCCS---EEEEESTTTTSCHHHH--HH
T ss_pred             HHcCCCHHHHHHHHHHHHHHc--CChh--hhcCChhhCCHHHHHHHHHHhhhccCCC---ceeecCCcccCCHHHH--HH
Confidence                     111111122111  1100  0011125799999999999999998884   555   8899999877  78


Q ss_pred             HHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          157 LEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       157 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      +.+.+.++.          +|++.++.+.|++.+++.+|++...
T Consensus       175 i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~  218 (239)
T d1v43a3         175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI  218 (239)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            777776653          8999999999999999999987654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.59  E-value=1.4e-17  Score=124.75  Aligned_cols=165  Identities=15%  Similarity=0.088  Sum_probs=106.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV   94 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   94 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+........ ........-.+++.|.++...+..+++ ....
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG----~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl-~~~~   97 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSG----RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNL-EFGM   97 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE----EEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHH-HHHH
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCC----EEEEccEeccccchhHhcceeeccccccCccccHHHHH-HHHH
Confidence            456789999999999999999999999876655    2222211110 000111234667777777655444432 1111


Q ss_pred             HHHhhc-cCCccEEEEEEe-------CCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHhhc
Q 027090           95 KCLGMA-KDGIHAFLVVFS-------VTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus        95 ~~~~~~-~~~~~~il~v~~-------~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~  163 (228)
                      ...... .+++..++..+.       ....+|+|++|++.++++++.+|.   ++|   |++.+|....  .++.+.+..
T Consensus        98 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~---iLllDEPts~LD~~~~--~~i~~~l~~  172 (229)
T d3d31a2          98 RMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK---ILLLDEPLSALDPRTQ--ENAREMLSV  172 (229)
T ss_dssp             HHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS---EEEEESSSTTSCHHHH--HHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCC---ceeecCCCcCCCHHHH--HHHHHHHHH
Confidence            111000 000000000011       115799999999999999999884   555   8899998877  777777765


Q ss_pred             cC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          164 EC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       164 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      +.          +|++.++...|++.+++.+|.+...
T Consensus       173 l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~  209 (229)
T d3d31a2         173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV  209 (229)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred             HHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            42          8999999999999999999987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.3e-14  Score=103.00  Aligned_cols=159  Identities=17%  Similarity=0.128  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      .+|+|+|..|||||||++.++.....    .....|........  .......+.++|++|......       ....++
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~   72 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGIFV----EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLYM   72 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCC----CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC----CccCCccccccceeEEeeeeEEEeccccccCcccccc-------cccccc
Confidence            58999999999999999999877642    12222322222211  112234589999999665432       111222


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                          ..+|+++++++++++-|..... ++..+......+ ..|++||.||+|+...  ......       ....+.+..
T Consensus        73 ----~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~--~~~~~~-------~~~~~~~~~  138 (167)
T d1c1ya_          73 ----KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE-DVPMILVGNKCDLEDE--RVVGKE-------QGQNLARQW  138 (167)
T ss_dssp             ----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS-CCCEEEEEECTTCGGG--CCSCHH-------HHHHHHHHT
T ss_pred             ----cccceeEEeeeccchhhhHhHHHHHHHHHHhcCCC-CCeEEEEEEecCcccc--cccchh-------HHHHHHHHh
Confidence                3459999999998666666554 555554443222 2389999999998754  221110       112222222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      ....+     +..||.++.+++++++.+.+.+
T Consensus       139 ~~~~~-----~e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         139 CNCAF-----LESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TSCEE-----EECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCEE-----EEEcCCCCcCHHHHHHHHHHHh
Confidence            21111     2457888999999998887655

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=3e-15  Score=109.43  Aligned_cols=161  Identities=16%  Similarity=0.050  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCccee--eEeEeeee-eCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      .+|+|+|.+|||||||++.+++.....    ....|..  ........ .....+.++||||......           .
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~----~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~   67 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSN----QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-----------L   67 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCS----SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-----------S
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCC----CcCCccceeeeeeeeeeCCceEEEEeeecCCcccccc-----------c
Confidence            589999999999999999998766421    1222222  21111111 1233578899999543221           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~--~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .......+++++++++.++.-+.... .+++.+......  ....|+++|.||+|+...  +.......        +..
T Consensus        68 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~--~~~~~~~~--------~~~  137 (184)
T d1vg8a_          68 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKRAQ--------AWC  137 (184)
T ss_dssp             CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHHHH--------HHH
T ss_pred             ccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc--chhHHHHH--------HHH
Confidence            12334577999999999744444333 345444444321  112389999999998654  32222111        122


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ......     ..+..||.++.++.++++.+.+.+.+
T Consensus       138 ~~~~~~-----~~~e~Sak~~~gI~e~f~~l~~~i~~  169 (184)
T d1vg8a_         138 YSKNNI-----PYFETSAKEAINVEQAFQTIARNALK  169 (184)
T ss_dssp             HHTTSC-----CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcCC-----eEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            111111     12345788889999999887554443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.58  E-value=4.6e-14  Score=100.97  Aligned_cols=163  Identities=14%  Similarity=0.069  Sum_probs=97.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      ++.+|+|+|.+|||||||+|.+++.......     .+...... ........+.++|+++....           ....
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~   66 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-----PTIGFNVE-TVTYKNLKFQVWDLGGLTSI-----------RPYW   66 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-----CCSSEEEE-EEEETTEEEEEEEECCCGGG-----------GGGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-----cccceeee-eeccCceEEEEeeccccccc-----------cccc
Confidence            4579999999999999999999987652211     12222222 22345677889999885432           1112


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhc
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC  176 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (228)
                      .......+.++++++.....+...... +...... ......|++++.||.|....  .........       .....+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~--~~~~~i~~~-------~~~~~~  136 (169)
T d1upta_          67 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQA--MTSSEMANS-------LGLPAL  136 (169)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTC--CCHHHHHHH-------HTGGGC
T ss_pred             hhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeecccccc--ccHHHHHHH-------HHHHHH
Confidence            233457789999999875555444332 2222211 11222478889999998765  333222221       011222


Q ss_pred             CCeEEEeeCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      ....+.   .++.||.++.+++++++.|.+.+++
T Consensus       137 ~~~~~~---~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         137 KDRKWQ---IFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             TTSCEE---EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hcCCCE---EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            222221   2355888999999999999888765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.5e-14  Score=102.75  Aligned_cols=160  Identities=18%  Similarity=0.054  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE-eeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      -.+|+|+|.+|||||||++.+++....    .....|...... ......+  ..+.++|++|...           ...
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-----------~~~   70 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFD----TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER-----------FRS   70 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCC----C----CCSEEEEEEEEEETTEEEEEEEEECCCCGG-----------GHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCC----CccccceeeeeeeeeeeecCceeeEeeecccCcce-----------ehh
Confidence            358999999999999999999876541    112222222211 1111233  3478999999432           223


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcc--ccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI  172 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~--~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ........+++++++++.+...|.... .+++.+.......  ...|+++|.||+|+.+.  .--.+        ..+++
T Consensus        71 ~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~--~v~~~--------~~~~~  140 (174)
T d1wmsa_          71 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTE--------EAQAW  140 (174)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHH--------HHHHH
T ss_pred             hhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhc--cCcHH--------HHHHH
Confidence            334455688999999999855555443 3455454443221  12389999999998653  21111        12333


Q ss_pred             HHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHH
Q 027090          173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI  208 (228)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  208 (228)
                      .+.....     ..+..||.++.+++++++.+.+.+
T Consensus       141 ~~~~~~~-----~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         141 CRDNGDY-----PYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             HHHTTCC-----CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCC-----eEEEEcCCCCcCHHHHHHHHHHHH
Confidence            3332211     113357888899999998776544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.8e-14  Score=103.10  Aligned_cols=165  Identities=15%  Similarity=0.053  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC--CcEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL   97 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   97 (228)
                      -+|+|+|.+|||||||++.++....+    .....|...........+  ...+.++|++|....           ....
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~   67 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------DNVR   67 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------TTTG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC----CccCCceeecccccccccceEEeeccccccccccc-----------cccc
Confidence            47999999999999999999876542    122233222222111122  335789999994322           1122


Q ss_pred             hhccCCccEEEEEEeCCCCCCHHHHH--HHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccC-----CchHH
Q 027090           98 GMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLK  170 (228)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~s~~~~~--~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~-----~~~~~  170 (228)
                      ......+|++++|+++++.-|.....  +...+... ....  |+++|.||+|....  ......+...+     .+...
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~--~iilVgnK~Dl~~~--~~~~~~~~~~~~~~V~~~e~~  142 (179)
T d1m7ba_          68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNT--KMLLVGCKSDLRTD--VSTLVELSNHRQTPVSYDQGA  142 (179)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTC--EEEEEEECGGGGGC--HHHHHHHHTTTCCCCCHHHHH
T ss_pred             cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhcc-CCcc--eEEEEEeccccccc--chhhHHHhhhhcCcchHHHHH
Confidence            34567889999999998666655433  33444333 3232  89999999998654  22211111111     11223


Q ss_pred             HHHHhcCCeEEEeeCCCcccccchHH-HHHHHHHHHHHHH
Q 027090          171 EILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIV  209 (228)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~  209 (228)
                      .+.+......     .+..||.++.+ ++++++.+.+.+-
T Consensus       143 ~~a~~~~~~~-----y~E~SAk~~~n~i~~~F~~~~~~~l  177 (179)
T d1m7ba_         143 NMAKQIGAAT-----YIECSALQSENSVRDIFHVATLACV  177 (179)
T ss_dssp             HHHHHHTCSE-----EEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCe-----EEEEeCCCCCcCHHHHHHHHHHHHh
Confidence            3333222211     12347777775 9999987776653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.8e-14  Score=102.13  Aligned_cols=162  Identities=22%  Similarity=0.179  Sum_probs=95.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      +..+|+++|..|||||||++.+++.....    ....|...........++  ..+.++|++|........       ..
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~   71 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVP----DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR-------EQ   71 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCT----TCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH-------HH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCc----ccCcceeeccccccccccccccccccccccccccccch-------hh
Confidence            34799999999999999999998765421    112222222222112233  457899999965443211       11


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ  174 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ++    +.+|+++++++++++-|.... .|+..+....... ..|++++.||+|+...  +.+..       ....++.+
T Consensus        72 ~~----~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~~--~~v~~-------e~~~~~~~  137 (169)
T d1x1ra1          72 YM----RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMHL--RKVTR-------DQGKEMAT  137 (169)
T ss_dssp             HH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCCEEEEEECTTCSTT--CCSCH-------HHHHHHHH
T ss_pred             hh----hhccEEEEecccccchhhhccchhhHHHHhhcccc-CccEEEEecccchhhh--ceeeh-------hhHHHHHH
Confidence            22    355999999999866666554 3555555443322 2389999999998765  33211       01222333


Q ss_pred             hcCCeEEEeeCCCcccccch-HHHHHHHHHHHHHHHh
Q 027090          175 LCDNRCVLFDNKTKDEAKGT-EQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~  210 (228)
                      ..+-.+      +..||.++ .+++++++.+.+.+.+
T Consensus       138 ~~~~~~------~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         138 KYNIPY------IETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             HHTCCE------EEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HcCCEE------EEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            332222      22455544 4899999888776654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=2.6e-17  Score=124.74  Aligned_cols=165  Identities=13%  Similarity=0.136  Sum_probs=106.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|    .+.........  .......-.+.+.++++......+.+ ...
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G----~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l-~~~   99 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL-RFV   99 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHH-HHH
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC----EEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHH-HHH
Confidence            356789999999999999999999999876555    22221111000  00112234566777776655433322 111


Q ss_pred             HHHHhhccC----CccEEEEEEe-------CCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHH
Q 027090           94 VKCLGMAKD----GIHAFLVVFS-------VTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLED  159 (228)
Q Consensus        94 ~~~~~~~~~----~~~~il~v~~-------~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~  159 (228)
                      .........    .++.++-.+.       .-..+|+|+++++.+++++..+|.   +++   |++.+|....  ..+.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~---illLDEPt~gLD~~~~--~~i~~  174 (238)
T d1vpla_         100 AGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR---LAILDEPTSGLDVLNA--REVRK  174 (238)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS---EEEEESTTTTCCHHHH--HHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCC---EEEecCCCCCCCHHHH--HHHHH
Confidence            111110000    0011111111       114799999999999999999884   555   8899998877  78888


Q ss_pred             HhhccC---------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          160 FLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       160 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      ++++..         +|++.++...|++.+++.+|++...
T Consensus       175 ~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~  214 (238)
T d1vpla_         175 ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET  214 (238)
T ss_dssp             HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            776643         8999999999999999999987654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=2.8e-15  Score=108.20  Aligned_cols=157  Identities=19%  Similarity=0.131  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeE--eEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      .+|+|+|..|||||||++.+++.....    ....|....  ..... ..+  ..+.++||+|....           ..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~----~~~~t~~~~~~~~~i~-~~~~~~~l~i~d~~g~~~~-----------~~   67 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAE----NKEPTIGAAFLTQRVT-INEHTVKFEIWDTAGQERF-----------AS   67 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCT----TCCCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGG-----------GG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCc----cccccccceeeccccc-cccccccccccccCCchhH-----------HH
Confidence            689999999999999999998776522    222232222  12222 223  45899999994331           11


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ........+|+++++++.+++.|..... ++..........  .+++++.||+|+.... .+.+.       .....++.
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~v~nk~d~~~~~~~~~v~-------~~~~~~~~  138 (170)
T d1ek0a_          68 LAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDMLQEGGERKVA-------REEGEKLA  138 (170)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGSSCCCCSC-------HHHHHHHH
T ss_pred             HHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccc--cceeeeecccccccccchhhhh-------HHHHHHHH
Confidence            1223345779999999999776666654 333333332222  3788899999975431 01111       01122333


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      +..+-.+      +..||.++.++++++..|.+.
T Consensus       139 ~~~~~~~------~e~Sak~g~gV~e~F~~i~~~  166 (170)
T d1ek0a_         139 EEKGLLF------FETSAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             HHHTCEE------EECCTTTCTTHHHHHHHHHTT
T ss_pred             HHcCCEE------EEecCCCCcCHHHHHHHHHHH
Confidence            3322221      345777889999999877543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.57  E-value=2e-16  Score=119.34  Aligned_cols=162  Identities=16%  Similarity=0.166  Sum_probs=106.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee------eeeCCcEEEEEeCCCCCCCCCCcHHH
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT------VLKDGQVVNVIDTPGLFDLSAGSEFV   89 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~~~~iDtpG~~~~~~~~~~~   89 (228)
                      -+++..++|+|+||||||||+++|.|...+.+|    .+.........      .......-.+++.|.++...+..+++
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G----~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni  103 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTG----ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI  103 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE----EEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHH
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCc----eEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHh
Confidence            356789999999999999999999999876665    22222221111      00112234677777766543322221


Q ss_pred             --------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           90 --------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        90 --------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                                    .+.....+...  +...  +.-.....+|+|++|++.+++++..+|.   ++|   |++.+|....
T Consensus       104 ~~~l~~~~~~~~~~~~~v~~~l~~~--gL~~--~~~~~p~~LSGGqkQRvaiARaL~~~P~---llllDEPt~~LD~~~~  176 (242)
T d1oxxk2         104 AFPLTNMKMSKEEIRKRVEEVAKIL--DIHH--VLNHFPRELSGAQQQRVALARALVKDPS---LLLLDEPFSNLDARMR  176 (242)
T ss_dssp             HGGGTTSSCCHHHHHHHHHHHHHHT--TCGG--GTTSCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTSCGGGH
T ss_pred             hhhhHhhcCCHHHHHHHHHHHHhhc--ChHh--hhhCChhhCCHHHHhHHHHHhHHhhccc---ceeecCCccCCCHHHH
Confidence                          11111122111  1100  0011114799999999999999998884   666   8899999887


Q ss_pred             chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                        ..+.+.+.++.          +|++.++.+.|++.+++.+|++...
T Consensus       177 --~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~  222 (242)
T d1oxxk2         177 --DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV  222 (242)
T ss_dssp             --HHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             --HHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence              88887776653          8999999999999999999987654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=2.4e-14  Score=101.96  Aligned_cols=163  Identities=8%  Similarity=-0.017  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+|+|++|||||||+|.|++.....     ...|....... .........++|+++....           .......
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-----~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEE-LAIGNIKFTTFDLGGHIQA-----------RRLWKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEE-ECCTTCCEEEEECCCSGGG-----------GGGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-----eeceeeEeEEE-eccCCeeEEEEeeccchhh-----------hhhHhhh
Confidence            79999999999999999999876521     12233222222 2245667889999884321           1223334


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCe
Q 027090          101 KDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR  179 (228)
Q Consensus       101 ~~~~~~il~v~~~~~~~s~~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (228)
                      ....+.++++++..+..+...... +...... ......|++++.||.|....  ....+..+...-.............
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~  141 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQR  141 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSC
T ss_pred             hhheeeeeeeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccC
Confidence            567799999999985555444332 2222221 22233478889999998654  3322222211100000001111111


Q ss_pred             EEEeeCCCcccccchHHHHHHHHHHHH
Q 027090          180 CVLFDNKTKDEAKGTEQVRQLLSLVNS  206 (228)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~i~~  206 (228)
                      .+   ..+..||.++++++|++++|.+
T Consensus       142 ~~---~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         142 PV---EVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CE---EEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CC---EEEEeeCCCCCCHHHHHHHHhC
Confidence            11   1244588899999999998753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.53  E-value=5.8e-16  Score=117.41  Aligned_cols=161  Identities=14%  Similarity=0.115  Sum_probs=101.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeee----eeCCcEEEEEeCCCCCCCCCCcHH--
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDLSAGSEF--   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~iDtpG~~~~~~~~~~--   88 (228)
                      .-+++..++|+|+||||||||+++|+|...+.+|    .+..........    .......++.+.++++...+..++  
T Consensus        28 ~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G----~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~  103 (240)
T d1ji0a_          28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG----KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLM  103 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHH
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc----EEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHH
Confidence            3456789999999999999999999999876655    222221111000    000112233444444433222111  


Q ss_pred             -----------HHHHHHHHHhh---ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           89 -----------VGKEIVKCLGM---AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        89 -----------~~~~~~~~~~~---~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                                 ..+........   ..+..+      .....+|+|++|++.+++++..+|.   +++   |++.+|...
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~LSGG~~Qrv~iAraL~~~P~---lLllDEPt~gLD~~~  174 (240)
T d1ji0a_         104 MGAYNRKDKEGIKRDLEWIFSLFPRLKERLK------QLGGTLSGGEQQMLAIGRALMSRPK---LLMMDEPSLGLAPIL  174 (240)
T ss_dssp             GGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT------SBSSSSCHHHHHHHHHHHHHTTCCS---EEEEECTTTTCCHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhChHHHHh------CchhhCCHHHHHHHHHHHHHHhCCC---EeeecCCCcCCCHHH
Confidence                       10111111110   001111      1114799999999999999999884   555   889999987


Q ss_pred             cchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          152 DHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       152 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      .  .++.+.++++.         +|++.++.+.|++.+++.+|++...
T Consensus       175 ~--~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~  220 (240)
T d1ji0a_         175 V--SEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE  220 (240)
T ss_dssp             H--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             H--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            7  88888777654         7999999999999999999987654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=9.5e-14  Score=106.84  Aligned_cols=118  Identities=23%  Similarity=0.327  Sum_probs=83.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHh---CCCcccccC-------------CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   81 (228)
                      +-++|+|+|+.|+|||||+.+|+   |........             .....|+...... ..+++..+.++||||+.+
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~-~~~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT-CFWKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEE-EEETTEEEEEECCCSSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceee-eccCCeEEEEecCCchhh
Confidence            34689999999999999999984   221110001             1112333333333 337788999999999988


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ...       +....+...    |..++|+++..+...++.+.++.+...   ..  |.++++||+|....
T Consensus        84 F~~-------e~~~~l~~~----D~avlVvda~~Gv~~~T~~~w~~a~~~---~l--P~i~fINKmDr~~a  138 (276)
T d2bv3a2          84 FTI-------EVERSMRVL----DGAIVVFDSSQGVEPQSETVWRQAEKY---KV--PRIAFANKMDKTGA  138 (276)
T ss_dssp             CST-------THHHHHHHC----CEEEEEEETTTSSCHHHHHHHHHHHTT---TC--CEEEEEECTTSTTC
T ss_pred             hHH-------HHHHHHHhh----hheEEeccccCCcchhHHHHHHHHHHc---CC--CEEEEEeccccccc
Confidence            753       444555444    999999999999999999988887754   33  79999999998765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.3e-13  Score=98.72  Aligned_cols=120  Identities=13%  Similarity=0.068  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee-eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      .+|+|+|..|||||||++.+++........  ............ .......+.++|++|...          .......
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~   70 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTE--ATIGVDFRERAVDIDGERIKIQLWDTAGQER----------FRKSMVQ   70 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCC--CCCSCCEEEEEEEETTEEEEEEEEECCCSHH----------HHTTTHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccC--cccccccceeeeeeeccceEEEEEeccCchh----------hccccce
Confidence            589999999999999999998765422221  111111111111 112234578899998321          1111112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~~~~-~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .....+|++++|+|++++-|.... .++..+......+ ..|++|+.||+|+...
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~pi~lvgnK~Dl~~~  124 (165)
T d1z06a1          71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN-DIPRILVGNKCDLRSA  124 (165)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS-CCCEEEEEECTTCGGG
T ss_pred             eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCC-CCeEEEEeccccchhc
Confidence            234578999999999866666654 3555554433221 2389999999998654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.50  E-value=4.6e-14  Score=106.94  Aligned_cols=172  Identities=10%  Similarity=0.024  Sum_probs=103.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCC---------
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDL---------   82 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~---------   82 (228)
                      .-+++.+++|+|+||||||||+++|+|...+.+|    .+........   ..........+.+.|.++..         
T Consensus        24 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G----~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~   99 (242)
T d1mv5a_          24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG----EITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYG   99 (242)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS----CEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCC----EEEECCEEeccccHHHHHhheEEEccccccCCcchhhheecc
Confidence            3466789999999999999999999999876555    2222211110   00011112234444433221         


Q ss_pred             --CCCcHHHHHHHHHHHhhc------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           83 --SAGSEFVGKEIVKCLGMA------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        83 --~~~~~~~~~~~~~~~~~~------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                        .........+..+.....      ....+..+  -+....+|+|+++++.++++++.+|   ++++   |++.+|...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~g~~LSGGqkQRv~iARal~~~p---~ililDEpts~LD~~~  174 (242)
T d1mv5a_         100 LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV--GERGVKISGGQRQRLAIARAFLRNP---KILMLDEATASLDSES  174 (242)
T ss_dssp             TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEE--STTSBCCCHHHHHHHHHHHHHHHCC---SEEEEECCSCSSCSSS
T ss_pred             cccccchhhHHHHHHHHHhhhhhccCcccccccc--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEecCCccccCHHH
Confidence              111111111111211110      11222221  2223469999999999999999888   4666   889999988


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  202 (228)
                      .  ..+.+.++...        +|.+..+ ..|++++++.+|++...    ...++|++
T Consensus       175 ~--~~i~~~l~~l~~~~Tvi~itH~l~~~-~~~D~i~vl~~G~iv~~----G~~~eLl~  226 (242)
T d1mv5a_         175 E--SMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEKGQITGS----GKHNELVA  226 (242)
T ss_dssp             C--CHHHHHHHHHHTTSEEEEECCSHHHH-HHCSEEEEEETTEECCC----SCHHHHHH
T ss_pred             H--HHHHHHHHHHcCCCEEEEEECCHHHH-HhCCEEEEEECCEEEEE----CCHHHHHh
Confidence            7  78877776543        8999766 56999999999987654    33455654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.2e-13  Score=102.59  Aligned_cols=120  Identities=15%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      ++|+|+|++|||||||+|+|++......   ..+.+...............+.++|+||...       .   ....+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~---~~~~~~~   67 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKVNNNRGNSLTLIDLPGHES-------L---RFQLLDR   67 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCSCEEEEEECSSTTCCEEEEEECCCCHH-------H---HHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc---cCCeeEEEEEEEEeeeeeeeeeeeecccccc-------c---cchhhhh
Confidence            4799999999999999999998765221   1122222222322223456799999999321       1   1122223


Q ss_pred             ccCCccEEEEEEeCCCCCCH--HHHHH-HHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090          100 AKDGIHAFLVVFSVTNRFSQ--EEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~--~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .....+.+++++++....+.  ...++ ..++..........|++++.||+|+...
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            34566999999998733222  11222 2333222111122378899999998753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.50  E-value=8.1e-16  Score=115.72  Aligned_cols=159  Identities=19%  Similarity=0.117  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe-eeeeCCcEEEEEeCCCCCCCCCCcH-----------
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSE-----------   87 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~iDtpG~~~~~~~~~-----------   87 (228)
                      ..++|+|+||||||||+++|+|...+.+|.    +........ ........-.+.+-|.++...+..+           
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G~----I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~  100 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGE----VRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER  100 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCceE----EEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCH
Confidence            488999999999999999999998766552    111111000 0001111123344455443322111           


Q ss_pred             -HHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE--EEeCCCCCccchhhHHHHhhcc
Q 027090           88 -FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV--VFTGGDDLEDHEKTLEDFLGHE  164 (228)
Q Consensus        88 -~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll--v~~~~D~~~~~~~~~~~~~~~~  164 (228)
                       +..+.....+...  +...  +.-.....+|+|++|++.+++++..+|.  -+++  |++.+|....  ..+.+.+.++
T Consensus       101 ~~~~~~v~~~l~~~--gl~~--~~~~~~~~LSGG~kQRvaiAral~~~P~--illlDEPts~LD~~~~--~~i~~~i~~l  172 (240)
T d2onka1         101 VERDRRVREMAEKL--GIAH--LLDRKPARLSGGERQRVALARALVIQPR--LLLLDEPLSAVDLKTK--GVLMEELRFV  172 (240)
T ss_dssp             HHHHHHHHHHHHTT--TCTT--TTTCCGGGSCHHHHHHHHHHHHHTTCCS--SBEEESTTSSCCHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CcHh--hhhCChhhCCHHHHHHHHHHHHHhccCC--ceEecCccccCCHHHH--HHHHHHHHHH
Confidence             1111122222211  1100  0011115799999999999999999885  3444  8899998877  7777777654


Q ss_pred             C----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          165 C----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       165 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      .          +|++.++.+.|++.+++.+|++...
T Consensus       173 ~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~  208 (240)
T d2onka1         173 QREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK  208 (240)
T ss_dssp             HHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            2          8999999999999999999986643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1e-15  Score=115.51  Aligned_cols=163  Identities=13%  Similarity=0.107  Sum_probs=104.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee------CCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK------DGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      .-.++..++|+|+||||||||+++|.|...+.+|    .+............      ....-.+++.|+++...+..++
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG----~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~en  102 (240)
T d3dhwc1          27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG----SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN  102 (240)
T ss_dssp             EECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEE----EEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCccccCC----ceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHH
Confidence            3456789999999999999999999999876555    22222211100000      0112345556666554332222


Q ss_pred             H--------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           89 V--------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        89 ~--------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                      +              .+.....+... .-.+   +.-.....+|+|++|++.+++++..+|.   ++|   |++.+|...
T Consensus       103 i~~~l~~~~~~~~~~~~~v~~~L~~v-gL~~---~~~~~~~~LSGG~~QRvaiAraL~~~P~---lLllDEPt~~LD~~~  175 (240)
T d3dhwc1         103 VALPLELDNTPKDEVKRRVTELLSLV-GLGD---KHDSYPSNLSGGQKQRVAIARALASNPK---VLLCDEATSALDPAT  175 (240)
T ss_dssp             HHHHHHTTTCCTTHHHHHHHHHHHHH-STTT---TTSSCBSCCCHHHHHHHHHHHHHHTCCS---EEEEESGGGSSCHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHc-CCch---hhhCChhhCCHHHHHHHHHhhhhccCCC---eEEeccccccCCHHH
Confidence            1              11111111110 0001   0011115799999999999999998884   666   889999987


Q ss_pred             cchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          152 DHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      .  ..+.+.+.++.          +|++..+...|++.+++.+|.+...
T Consensus       176 ~--~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~  222 (240)
T d3dhwc1         176 T--RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ  222 (240)
T ss_dssp             H--HHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             h--hHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            7  78887776653          8999999999999999999986543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.50  E-value=2e-15  Score=115.51  Aligned_cols=166  Identities=11%  Similarity=0.016  Sum_probs=103.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee----------------eCCcEEEEEeCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL----------------KDGQVVNVIDTPGL   79 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~~~iDtpG~   79 (228)
                      -.++..++|+|+||||||||+++|+|...+.+|    .+...........                .....-.+++.|.+
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G----~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l  100 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG----AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL  100 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcCccCCCC----CEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhh
Confidence            356789999999999999999999998875554    2222211110000                00112345677776


Q ss_pred             CCCCCCcHHHHHHHHHHH-----------hhccCCccEEEEEE-eCCCCCCHHHHHHHHHHHHHhCccccccEEE---EE
Q 027090           80 FDLSAGSEFVGKEIVKCL-----------GMAKDGIHAFLVVF-SVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VF  144 (228)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~il~v~-~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~  144 (228)
                      ....+..++.........           ......+...-... .....+|+|++|++.+++++..+|.   ++|   |+
T Consensus       101 ~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~---llilDEPT  177 (258)
T d1b0ua_         101 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPD---VLLFDEPT  177 (258)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCS---EEEEESTT
T ss_pred             ccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCC---EEEecccc
Confidence            655443332211111100           00000001000000 1114699999999999999998884   665   88


Q ss_pred             eCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          145 TGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       145 ~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      +.+|....  .++.+.+++..         +|++.++...|++++++.+|.+...
T Consensus       178 ~gLD~~~~--~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~  230 (258)
T d1b0ua_         178 SALDPELV--GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  230 (258)
T ss_dssp             TTSCHHHH--HHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             ccCCHHHH--HHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99998877  77777776544         8999999999999999999987644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=4.9e-14  Score=104.72  Aligned_cols=116  Identities=11%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA  100 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  100 (228)
                      +|+|+|++|||||||+|+|++....      ...|.... .......+..+.++||||.....       ..+...+...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~-~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~   70 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDSVR------PTVVSQEP-LSAADYDGSGVTLVDFPGHVKLR-------YKLSDYLKTR   70 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSSCC------CBCCCSSC-EEETTGGGSSCEEEECCCCGGGT-------HHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC------CeEEecce-EEEEEeCCeEEEEEecccccchh-------hHHHHHHHHH
Confidence            8999999999999999999987641      12222222 22233456678999999965422       2333334334


Q ss_pred             cCCccEEEEEEeCCC-CCC-HHHHHHH----HHHHHHhCccccccEEEEEeCCCCCcc
Q 027090          101 KDGIHAFLVVFSVTN-RFS-QEEETAV----HRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus       101 ~~~~~~il~v~~~~~-~~s-~~~~~~l----~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ....+.+++++++.. ..+ .....++    ..+.......  .|+++++||+|....
T Consensus        71 ~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          71 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA  126 (209)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred             hhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhcc--CCeEEEEEeeccccc
Confidence            445588888888762 222 2222333    2233322222  389999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.49  E-value=3.8e-13  Score=103.19  Aligned_cols=114  Identities=30%  Similarity=0.315  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCCccc----ccC---------CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSIL---GRKAFK----ASA---------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS   83 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~---g~~~~~----~~~---------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   83 (228)
                      ++|+|+|+.|+|||||+.+|+   |.....    .+.         .....|........ .+++..+.++||||..+. 
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~-~~~~~~~n~iDtPGh~dF-   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGYGDF-   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCSGGG-
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccc-cccccceeEEccCchhhh-
Confidence            689999999999999999984   222110    000         01223444333333 367888999999997763 


Q ss_pred             CCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCC
Q 027090           84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL  150 (228)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~  150 (228)
                            ..+....+..+    |.+++|+++..+...++.+.++.+...   ..  |.++++||+|..
T Consensus        81 ------~~e~~~al~~~----D~avlvvda~~Gv~~~t~~~~~~~~~~---~~--p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 ------VGEIRGALEAA----DAALVAVSAEAGVQVGTERAWTVAERL---GL--PRMVVVTKLDKG  132 (267)
T ss_dssp             ------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHT---TC--CEEEEEECGGGC
T ss_pred             ------hhhhhhhhccc----CceEEEeeccCCccchhHHHHHhhhhc---cc--cccccccccccc
Confidence                  35555665555    999999999999999999988888764   22  688899999964

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=2e-16  Score=121.12  Aligned_cols=165  Identities=19%  Similarity=0.130  Sum_probs=101.9

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee----eeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT----VLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        13 ~~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      +..-.++..++|+|+||||||||+++|+|...+.+|    .+.........    ........++.+.|.++...+..++
T Consensus        24 s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G----~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~en   99 (254)
T d1g6ha_          24 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG----RVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN   99 (254)
T ss_dssp             CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCc----EEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeee
Confidence            344466789999999999999999999999876555    22222111100    0000112344555543322211111


Q ss_pred             ---------------------------HHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEE
Q 027090           89 ---------------------------VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI  141 (228)
Q Consensus        89 ---------------------------~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~l  141 (228)
                                                 ..+.....+...  +...  +.-.....+|+|++|++.+++++..+|.   ++
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~--~~~~~~~~LSgG~~Qrv~iAraL~~~P~---ll  172 (254)
T d1g6ha_         100 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSH--LYDRKAGELSGGQMKLVEIGRALMTNPK---MI  172 (254)
T ss_dssp             HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGG--GTTSBGGGSCHHHHHHHHHHHHHHTCCS---EE
T ss_pred             eeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhc--Ccch--hccCchhhCCcHHHHHHHHHHHHHhCcC---ch
Confidence                                       111111111111  0000  0001114799999999999999998884   55


Q ss_pred             E---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          142 V---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       142 l---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      +   |++.+|....  .++.+.+.+.+         +|++.++.+.|++++++.+|++...
T Consensus       173 ilDEPt~gLD~~~~--~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~  231 (254)
T d1g6ha_         173 VMDEPIAGVAPGLA--HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE  231 (254)
T ss_dssp             EEESTTTTCCHHHH--HHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred             hhcCCcccCCHHHH--HHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE
Confidence            5   8899998877  77777776553         8999999999999999999987654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.8e-13  Score=98.05  Aligned_cols=159  Identities=20%  Similarity=0.152  Sum_probs=89.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC--cEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK   95 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   95 (228)
                      +..+|+++|..|||||||++.+++....  ..   ..+...........++  ..+.++||+|...         .   .
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~--~~---~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~---------~---~   66 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQ--VL---EKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------A---K   66 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCC--CC---CCSSCEEEEEEEEETTEEEEEEEEECSSCCC---------H---H
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCC--Cc---CCccceeEEEEeecCceEEEEEEeecccccc---------c---c
Confidence            3589999999999999999999887641  11   1122222222112334  4588999999442         1   1


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhCc-cccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHH
Q 027090           96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL  173 (228)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~s~~~~~-~l~~~~~~~~~-~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ++.    .+|++++|+|++++-|..... +...+...... +...|+++|.||.|........+..       ...+.+.
T Consensus        67 ~~~----~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~-------~~~~~~~  135 (175)
T d2bmja1          67 FSG----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARALC  135 (175)
T ss_dssp             HHH----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCH-------HHHHHHH
T ss_pred             ccc----ccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhH-------HHHHHHH
Confidence            222    359999999998666665543 44444433211 1223788899888864321011110       0112222


Q ss_pred             HhcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHH
Q 027090          174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV  209 (228)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~  209 (228)
                      ...... ..    +..||.++.++++++..+.+.+.
T Consensus       136 ~~~~~~-~~----~e~SAk~~~~v~~~F~~l~~~i~  166 (175)
T d2bmja1         136 ADMKRC-SY----YETCATYGLNVDRVFQEVAQKVV  166 (175)
T ss_dssp             HTSTTE-EE----EEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             HHhCCC-eE----EEeCCCCCcCHHHHHHHHHHHHH
Confidence            222211 11    23577888999999876655443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.46  E-value=1.3e-15  Score=114.25  Aligned_cols=161  Identities=18%  Similarity=0.141  Sum_probs=99.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeee-------CCcEEEEEeCCCCCCCCCCcH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-------DGQVVNVIDTPGLFDLSAGSE   87 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~~~iDtpG~~~~~~~~~   87 (228)
                      .-+++..++|+|+||||||||+++|.|...+.+|    .+............       ....-.+++.|.+....+..+
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG----~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~e  102 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG----EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALE  102 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHH
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccCCCCCCcc----eeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHH
Confidence            3456789999999999999999999999876555    22222111100000       011235556666554433222


Q ss_pred             HH-----------------HHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCC
Q 027090           88 FV-----------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGG  147 (228)
Q Consensus        88 ~~-----------------~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~  147 (228)
                      +.                 .+.+...+... .-.+.+  .-.....+|+|++|++.++++++.+|.   +++   |++.+
T Consensus       103 ni~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~--~~~~p~~LSGGqkQRvaIAraL~~~P~---lLllDEPTs~L  176 (230)
T d1l2ta_         103 NVELPLIFKYRGAMSGEERRKRALECLKMA-ELEERF--ANHKPNQLSGGQQQRVAIARALANNPP---IILADQPTGAL  176 (230)
T ss_dssp             HHHHHHHTCCSSCCCHHHHHHHHHHHHHHT-TCCGGG--TTCCGGGSCHHHHHHHHHHHHHTTCCS---EEEEESTTTTS
T ss_pred             HHhHHHHHhccCCCCHHHHHHHHHHHHHhh-chhhhh--hcCChhhCCHHHHHHHHHHhhhhcCCC---EEEecCCcccc
Confidence            21                 11111111111 000000  000113699999999999999998884   666   88999


Q ss_pred             CCCccchhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCc
Q 027090          148 DDLEDHEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTK  188 (228)
Q Consensus       148 D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
                      |....  ..+.+.+.++.          +|++..+ +.|++.+++.+|.+.
T Consensus       177 D~~~~--~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv  224 (230)
T d1l2ta_         177 DSKTG--EKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE  224 (230)
T ss_dssp             CHHHH--HHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEE
T ss_pred             CHHHH--HHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEE
Confidence            99887  88887777642          8998754 799999999888764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-14  Score=109.47  Aligned_cols=171  Identities=17%  Similarity=0.142  Sum_probs=102.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEee---eeeCCcEEEEEeCCCCCCCC---------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT---VLKDGQVVNVIDTPGLFDLS---------   83 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~~---------   83 (228)
                      -+++.+++|+|+||||||||+++|+|...+.+|    .+..+......   .........+.+.|-++...         
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G----~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~  112 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG----QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGL  112 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcccCCCcC----EEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhh
Confidence            367789999999999999999999999876554    22222211100   00111223444555443221         


Q ss_pred             --CC-cHHHHHHHHH-----HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           84 --AG-SEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        84 --~~-~~~~~~~~~~-----~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                        .. ..........     .+.....+.+..+  -+....+|+|+++++.++++++.+|   ++++   |++.+|....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i--~~~~~~LSGGqkQRvaiARal~~~p---~ililDEpTs~LD~~~~  187 (251)
T d1jj7a_         113 TQKPTMEEITAAAVKSGAHSFISGLPQGYDTEV--DEAGSQLSGGQRQAVALARALIRKP---CVLILDDATSALDANSQ  187 (251)
T ss_dssp             SSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBC--CSSCSSSCHHHHHHHHHHHHHTTCC---SEEEEESTTTTCCHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhccccchhhH--hccCccCChhHceEEEEeeccccCC---cEEEecCcCcccChhhH
Confidence              00 1111010000     0111111223221  1223579999999999999999888   4666   7899998776


Q ss_pred             chhhHHHHhhccC----------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090          153 HEKTLEDFLGHEC----------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (228)
Q Consensus       153 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  202 (228)
                        ..+.+.+.+..          +|.+.. ++.|++++++.+|.+...    ...++|++
T Consensus       188 --~~i~~~l~~l~~~~~~Tvi~itH~l~~-~~~aDrI~vl~~G~iv~~----Gt~~eLl~  240 (251)
T d1jj7a_         188 --LQVEQLLYESPERYSRSVLLITQHLSL-VEQADHILFLEGGAIREG----GTHQQLME  240 (251)
T ss_dssp             --HHHHHHHHTCGGGGGCEEEEECSCHHH-HHTCSEEEEEETTEEEEE----ECHHHHHH
T ss_pred             --HHHHHHHHHHhhhcCCEEEEEeCCHHH-HHhCCEEEEEECCEEEEE----CCHHHHHh
Confidence              77777775432          888875 477999999999987654    33455544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.44  E-value=1.5e-12  Score=97.39  Aligned_cols=121  Identities=12%  Similarity=0.084  Sum_probs=78.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC---CCccc-----------cc-----------------CCCCCcceeeEeEeee
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG---RKAFK-----------AS-----------------AGSSGVTKTCEMKTTV   64 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g---~~~~~-----------~~-----------------~~~~~~t~~~~~~~~~   64 (228)
                      .+.-.+++++|+.++|||||+++|+.   .....           .+                 ......+........ 
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~-   84 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF-   84 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE-
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE-
Confidence            44557899999999999999999953   21100           00                 000112222222221 


Q ss_pred             eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEE
Q 027090           65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF  144 (228)
Q Consensus        65 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~  144 (228)
                      ....+.+.++||||..+.       ..+..+.    ...+|++++|+++..++...+++.+.++..+ +-+   ++++++
T Consensus        85 ~~~~~~~~iiD~PGH~df-------v~~~~~g----~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv~---~iiv~v  149 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQY-------TRNMATG----ASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAI  149 (222)
T ss_dssp             ECSSEEEEEEECCCSGGG-------HHHHHHH----HTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEE
T ss_pred             eccceEEEEEeccchhhh-------hhhhccc----cccCceEEEEeccccCcccchHHHHHHHHHc-CCC---EEEEEE
Confidence            245677999999995542       2333333    3466999999999999999888877776654 323   688999


Q ss_pred             eCCCCCcc
Q 027090          145 TGGDDLED  152 (228)
Q Consensus       145 ~~~D~~~~  152 (228)
                      ||+|....
T Consensus       150 NK~D~~~~  157 (222)
T d1zunb3         150 NKMDLNGF  157 (222)
T ss_dssp             ECTTTTTS
T ss_pred             Eccccccc
Confidence            99998764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.43  E-value=1.6e-13  Score=99.56  Aligned_cols=169  Identities=11%  Similarity=0.037  Sum_probs=88.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC   96 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   96 (228)
                      ++..+|+|+|++|||||||+++|++........     +........ .........+|+++......           .
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~   73 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEEL-TIAGMTFTTFDLGGHIQARR-----------V   73 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------C-----CCCCSCEEE-EETTEEEEEEEECC----CC-----------G
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceec-----ccccceeEE-Eecccccccccccchhhhhh-----------H
Confidence            556899999999999999999999887522211     111111111 24556677888888443321           1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCccccccEEEEEeCCCCCccc-hhhHHHHhhccCCchHH---H
Q 027090           97 LGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLK---E  171 (228)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~s~~~~~~-l~~~~~~~~~~~~~~~llv~~~~D~~~~~-~~~~~~~~~~~~~~~~~---~  171 (228)
                      ........+.++++++.....+...... +...... ......|++++.||.|..... ...+.+.+.........   .
T Consensus        74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~  152 (186)
T d1f6ba_          74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS  152 (186)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred             HhhhhcccceeeeeeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhh
Confidence            2233456789999999874444443332 1111111 111234899999999986541 12222222211100000   0


Q ss_pred             HHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ........+    ..+..||.++++++|++++|.+.
T Consensus       153 ~~~~~~~~~----~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         153 LKELNARPL----EVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             TTTCCSCCE----EEEECBTTTTBSHHHHHHHHHTT
T ss_pred             HHHhhcCCC----EEEEEeCCCCCCHHHHHHHHHHh
Confidence            000000011    12356899999999999988754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=6.3e-13  Score=102.77  Aligned_cols=153  Identities=13%  Similarity=0.108  Sum_probs=91.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCC---------CCCc
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL---------SAGS   86 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~---------~~~~   86 (228)
                      -+++..++|+|+||||||||+++|+|...+.+|.    +...          +...++.+.|-+...         ....
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~----I~~~----------g~i~~v~Q~~~l~~~tv~eni~~~~~~~  124 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGI----IKHS----------GRVSFCSQFSWIMPGTIKENIIFGVSYD  124 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEE----EECC----------SCEEEECSSCCCCSEEHHHHHTTTSCCC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcE----EEEC----------CEEEEEeccccccCceeecccccccccc
Confidence            3567899999999999999999999988755552    1111          111111122211110         0011


Q ss_pred             HHHHHHHHHHHh------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhH
Q 027090           87 EFVGKEIVKCLG------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTL  157 (228)
Q Consensus        87 ~~~~~~~~~~~~------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~  157 (228)
                      ........+...      ......+..  +-+....+|+|+++++.++++++.+|   +++|   |++.+|....  ..+
T Consensus       125 ~~~~~~~~~~~~~~~~i~~l~~~~~~~--~~~~~~~LSgGqkQRv~lARaL~~~p---~illLDEPts~LD~~~~--~~i  197 (281)
T d1r0wa_         125 EYRYKSVVKACQLQQDITKFAEQDNTV--LGEGGVTLSGGQRARISLARAVYKDA---DLYLLDSPFGYLDVFTE--EQV  197 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHTTSTTGGGCE--ECTTCTTSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSSCHHHH--HHH
T ss_pred             chHHHHHHHHHHhHHHHHhchhhhhhh--hhhhccCCCHHHHHHHHHHHHHHhCc---cchhhcCccccCCHHHH--HHH
Confidence            111122222111      111122322  12222469999999999999999988   4666   8899998765  666


Q ss_pred             HHH-hhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          158 EDF-LGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       158 ~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                      .+. +....        +|.+.. ++.|++++++.+|.+...
T Consensus       198 ~~~~~~~~~~~~tvi~itH~~~~-l~~aDrI~vl~~G~i~~~  238 (281)
T d1r0wa_         198 FESCVCKLMANKTRILVTSKMEH-LRKADKILILHQGSSYFY  238 (281)
T ss_dssp             HHHCCCCCTTTSEEEEECSCHHH-HHTCSEEEEEETTEEEEE
T ss_pred             HHHHHHHhhCCCEEEEEechHHH-HHhCCEEEEEECCEEEEE
Confidence            543 33322        788865 578999999999987644

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.38  E-value=7.4e-15  Score=112.02  Aligned_cols=171  Identities=17%  Similarity=0.139  Sum_probs=102.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeE---eeeeeCCcEEEEEeCCCCCCCCCCcHH---
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK---TTVLKDGQVVNVIDTPGLFDLSAGSEF---   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~iDtpG~~~~~~~~~~---   88 (228)
                      .-+++.+++|+|++|||||||++.|+|...+.+|    .+.......   ..........++.+.|-++.... .++   
T Consensus        40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G----~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti-~eNi~~  114 (255)
T d2hyda1          40 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG----QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTV-KENILL  114 (255)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE----EEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBH-HHHHGG
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHhcCCcccc----ccccCCEEcccCCHHHhhheeeeeeccccCCCCCH-HHHHhc
Confidence            3457789999999999999999999998875554    222111110   00001112234444454433210 000   


Q ss_pred             -----HHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           89 -----VGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        89 -----~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                           ...++..+....         ..+.+..+  -+....+|+|+++++.++++++.+|   ++++   |++.+|...
T Consensus       115 g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i--~~~g~~LSgGq~QRi~iARal~~~p---~ililDEpts~LD~~t  189 (255)
T d2hyda1         115 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEV--GERGVKLSGGQKQRLSIARIFLNNP---PILILDEATSALDLES  189 (255)
T ss_dssp             GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC--CGGGTTSCHHHHHHHHHHHHHHHCC---SEEEEESTTTTCCHHH
T ss_pred             cCcCCCHHHHHHHHHHhCCHHHHHhccccccchh--cCCCCCcCHHHHHHHHHHHHHhcCC---CEEEEeCccccCCHHH
Confidence                 012222222111         11222211  1222479999999999999999888   4665   779999877


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  202 (228)
                      .  ..+.+.+....        +|.+..+ ..|+.++++.+|++...    ...++|++
T Consensus       190 ~--~~i~~~l~~l~~~~TvI~itH~~~~~-~~~D~ii~l~~G~iv~~----G~~~eLl~  241 (255)
T d2hyda1         190 E--SIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVET----GTHRELIA  241 (255)
T ss_dssp             H--HHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEEEETTEEEEE----ECHHHHHH
T ss_pred             H--HHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEE----CCHHHHHh
Confidence            6  77777776543        7888754 67999999999987654    33455544

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.37  E-value=1.3e-14  Score=110.78  Aligned_cols=172  Identities=17%  Similarity=0.204  Sum_probs=101.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCCCCcH----
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLSAGSE----   87 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~~~~~----   87 (228)
                      .-+++.+++|+|++|||||||+++|+|...+.+|    .+........   ...+......+.+.|.++.......    
T Consensus        37 ~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G----~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~  112 (253)
T d3b60a1          37 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG----HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA  112 (253)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE----EEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTT
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcccCCCcc----EEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhc
Confidence            3456789999999999999999999998775544    2222111100   0001111233444444332211000    


Q ss_pred             ----HHHHHHHHHHhhc---------cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCc
Q 027090           88 ----FVGKEIVKCLGMA---------KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLE  151 (228)
Q Consensus        88 ----~~~~~~~~~~~~~---------~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~  151 (228)
                          ...+++..+....         ..+.+..+  -+....+|+|+++++.++++++.+|   +++|   |++.+|...
T Consensus       113 ~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~--~~~~~~LSGGqkQRvaiARal~~~p---~ililDEpts~LD~~~  187 (253)
T d3b60a1         113 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTII--GENGVLLSGGQRQRIAIARALLRDS---PILILDEATSALDTES  187 (253)
T ss_dssp             TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBC--CTTSCSSCHHHHHHHHHHHHHHHCC---SEEEEETTTSSCCHHH
T ss_pred             CcccCCHHHHHHHHHHHhHHHHHHhccccchhhh--cCCCCCcCHHHHHHHHHHHHHhcCC---CEEEeccccccCCHHH
Confidence                0011222221111         11222211  1222469999999999999999888   4666   889999887


Q ss_pred             cchhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHH
Q 027090          152 DHEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS  202 (228)
Q Consensus       152 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  202 (228)
                      .  ..+.+.+....        +|.+..+ +.|+.++++.+|++...    ...++|++
T Consensus       188 ~--~~i~~~l~~l~~~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv~~----G~~~eLl~  239 (253)
T d3b60a1         188 E--RAIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGIIVER----GTHSELLA  239 (253)
T ss_dssp             H--HHHHHHHHHHHTTSEEEEECSCGGGT-TTCSEEEEEETTEEEEE----ECHHHHHH
T ss_pred             H--HHHHHHHHHhccCCEEEEEECCHHHH-HhCCEEEEEECCEEEEE----CCHHHHHh
Confidence            6  77777666542        7888755 67999999999987644    33455553

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.5e-14  Score=109.44  Aligned_cols=162  Identities=17%  Similarity=0.139  Sum_probs=96.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe---eeeeCCcEEEEEeCCCCCCCC---------
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLFDLS---------   83 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~~~~~---------   83 (228)
                      -+++.+++|+|++|||||||+++|+|...+.+|    .+........   ..........+.+.|-++...         
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G----~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~  101 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG----QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN  101 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE----EEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCC----EEEECCEEecccchhhhhceEEEEecccccCCccccccccccC
Confidence            356789999999999999999999998775544    2222111100   000011122344444433221         


Q ss_pred             --CCcHHHHHHHHHHHh------hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCcc
Q 027090           84 --AGSEFVGKEIVKCLG------MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLED  152 (228)
Q Consensus        84 --~~~~~~~~~~~~~~~------~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~  152 (228)
                        ...+.. .+..+...      ....+.+..  +-.....+|+|+++++.++++++.+|   +++|   |++.+|....
T Consensus       102 ~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~t~--i~~~g~~LSGGq~QRvalARal~~~p---~ililDEpts~LD~~~~  175 (241)
T d2pmka1         102 PGMSVEKV-IYAAKLAGAHDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNP---KILIFDEATSALDYESE  175 (241)
T ss_dssp             TTCCHHHH-HHHHHHHTCHHHHTTSTTGGGSB--CSTTTTCCCHHHHHHHHHHHHHTTCC---SEEEECCCCSCCCHHHH
T ss_pred             ccccHHHH-HHHHHHHhhHHHHHhhhcchhhh--cCCCCCccCHHHHHHHhhhhhhhccc---chhhhhCCccccCHHHH
Confidence              111111 11111110      111122211  12223579999999999999999888   4666   8899998877


Q ss_pred             chhhHHHHhhccC--------CchHHHHHHhcCCeEEEeeCCCccc
Q 027090          153 HEKTLEDFLGHEC--------PKPLKEILQLCDNRCVLFDNKTKDE  190 (228)
Q Consensus       153 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  190 (228)
                        ..+.+.+.+..        +|.+..+ +.|++++++.+|++...
T Consensus       176 --~~i~~~l~~l~~~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~~  218 (241)
T d2pmka1         176 --HVIMRNMHKICKGRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQ  218 (241)
T ss_dssp             --HHHHHHHHHHHTTSEEEEECSSGGGG-TTSSEEEEEETTEEEEE
T ss_pred             --HHHHHHHHHHhCCCEEEEEECCHHHH-HhCCEEEEEECCEEEEE
Confidence              77777666542        7888654 67999999999987644

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=2.7e-12  Score=97.05  Aligned_cols=129  Identities=19%  Similarity=0.238  Sum_probs=81.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh---CCCccc--------------------------ccCCCCCcceeeEeEeeeeeCCc
Q 027090           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK--------------------------ASAGSSGVTKTCEMKTTVLKDGQ   69 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~---g~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~~   69 (228)
                      ..+|+++|+.++|||||+..|+   |.....                          .......+|.+....... +...
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~   84 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPKY   84 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSSE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEec-cCCE
Confidence            4799999999999999998884   321100                          000113455555444433 5778


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCccccccEEE
Q 027090           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIV  142 (228)
Q Consensus        70 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~s~~~~~~l~~~~~~~~~~~~~~~ll  142 (228)
                      .+.++||||..+           +...+......+|.+++++++..+       ....+++.+.++..+ +-+   ++++
T Consensus        85 ~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~-gv~---~iiv  149 (239)
T d1f60a3          85 QVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL-GVR---QLIV  149 (239)
T ss_dssp             EEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-TCC---EEEE
T ss_pred             EEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc-CCC---eEEE
Confidence            899999999654           344444555678999999999732       222344444444433 333   6888


Q ss_pred             EEeCCCCCccchhhHHHHhhc
Q 027090          143 VFTGGDDLEDHEKTLEDFLGH  163 (228)
Q Consensus       143 v~~~~D~~~~~~~~~~~~~~~  163 (228)
                      ++||+|....+...+....+.
T Consensus       150 ~iNKmD~~~~d~~~~~~~~~e  170 (239)
T d1f60a3         150 AVNKMDSVKWDESRFQEIVKE  170 (239)
T ss_dssp             EEECGGGGTTCHHHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHHH
Confidence            999999876533444444444

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=3.8e-14  Score=106.85  Aligned_cols=71  Identities=17%  Similarity=0.218  Sum_probs=57.3

Q ss_pred             CCCCHHHHHHHHHHHHHhC-------ccccccEEE---EEeCCCCCccchhhHHHHhhccC---------CchHHHHHHh
Q 027090          115 NRFSQEEETAVHRLPNLFG-------KNVFDYMIV---VFTGGDDLEDHEKTLEDFLGHEC---------PKPLKEILQL  175 (228)
Q Consensus       115 ~~~s~~~~~~l~~~~~~~~-------~~~~~~~ll---v~~~~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  175 (228)
                      ..+|+|++|++.++++++.       .|.   +++   |++.+|....  ..+.+.+++..         +|++.++.+.
T Consensus       124 ~~LSgG~~Qrv~iA~al~~~~p~~~p~p~---llllDEPt~gLD~~~~--~~i~~~i~~l~~~g~tii~vtHdl~~~~~~  198 (231)
T d1l7vc_         124 NQLSGGEWQRVRLAAVVLQITPQANPAGQ---LLLLDEPMNSLDVAQQ--SALDKILSALCQQGLAIVMSSHDLNHTLRH  198 (231)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHCTTTCTTCC---EEEESSCSTTCCHHHH--HHHHHHHHHHHHTTCEEEECCCCHHHHHHH
T ss_pred             hhcCHHHHHHHHHHHHHHhhCcccCCCCC---EEEEcCCCCCCCHHHH--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            4699999999999998864       221   444   8899998776  77777777653         8999999999


Q ss_pred             cCCeEEEeeCCCccc
Q 027090          176 CDNRCVLFDNKTKDE  190 (228)
Q Consensus       176 ~~~~~~~~~~~~~~~  190 (228)
                      |++.+++.+|++...
T Consensus       199 ~dri~vl~~G~iv~~  213 (231)
T d1l7vc_         199 AHRAWLLKGGKMLAS  213 (231)
T ss_dssp             CSBCCBEETTEECCC
T ss_pred             CCEEEEEECCEEEEE
Confidence            999999999987654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=7.2e-12  Score=99.10  Aligned_cols=116  Identities=22%  Similarity=0.320  Sum_probs=77.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh---CCCccc-c----------cCCCCCcceeeEeEeee---------------eeCCc
Q 027090           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK-A----------SAGSSGVTKTCEMKTTV---------------LKDGQ   69 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~---g~~~~~-~----------~~~~~~~t~~~~~~~~~---------------~~~~~   69 (228)
                      -++|+|+|+.++|||||+.+|+   |..... .          ....+..|.........               ..+..
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            4579999999999999999995   221100 0          01112233332222211               11234


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCC
Q 027090           70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD  149 (228)
Q Consensus        70 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~  149 (228)
                      .+.++||||..+..       .+...++..+    |.+++|+++.++....+...++.+...   ..  |.++++||+|.
T Consensus        97 ~inliDtPGh~dF~-------~ev~~al~~~----D~allVVda~eGv~~qT~~~~~~a~~~---~~--p~i~viNKiDr  160 (341)
T d1n0ua2          97 LINLIDSPGHVDFS-------SEVTAALRVT----DGALVVVDTIEGVCVQTETVLRQALGE---RI--KPVVVINKVDR  160 (341)
T ss_dssp             EEEEECCCCCCSSC-------HHHHHHHHTC----SEEEEEEETTTBSCHHHHHHHHHHHHT---TC--EEEEEEECHHH
T ss_pred             EEEEEcCCCcHHHH-------HHHHHHHhhc----CceEEEEecccCcchhHHHHHHHHHHc---CC--CeEEEEECccc
Confidence            58999999988764       5666666544    999999999999999999988887654   22  68999999995


Q ss_pred             C
Q 027090          150 L  150 (228)
Q Consensus       150 ~  150 (228)
                      .
T Consensus       161 ~  161 (341)
T d1n0ua2         161 A  161 (341)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.28  E-value=4e-13  Score=99.03  Aligned_cols=131  Identities=12%  Similarity=0.060  Sum_probs=75.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHH------
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG------   90 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~------   90 (228)
                      +++..++|+|+||||||||+++|+|...|.+|    .+......  .........++-+.+.+.......+...      
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G----~I~~~g~~--i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~   98 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG----EIIYNGVP--ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLY   98 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEE--GGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccccCCC----EEEECCEe--hhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhc
Confidence            45679999999999999999999999876555    22221111  1111222334444444433222111110      


Q ss_pred             ------HHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEE---EEeCCCCCccchhhHHHHh
Q 027090           91 ------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV---VFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus        91 ------~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ll---v~~~~D~~~~~~~~~~~~~  161 (228)
                            +++...+... .-.+   +--.+ ..+|+|+++++.++++++.++   +++|   |++.+|....  ..+.+.+
T Consensus        99 ~~~~~~~~~~~~l~~~-~~~~---~~~~~-~~LSgG~~qrv~ia~al~~~~---~llllDEPt~gLD~~~~--~~i~~~l  168 (200)
T d1sgwa_          99 GVKVNKNEIMDALESV-EVLD---LKKKL-GELSQGTIRRVQLASTLLVNA---EIYVLDDPVVAIDEDSK--HKVLKSI  168 (200)
T ss_dssp             TCCCCHHHHHHHHHHT-TCCC---TTSBG-GGSCHHHHHHHHHHHHTTSCC---SEEEEESTTTTSCTTTH--HHHHHHH
T ss_pred             CCccCHHHHHHHHHHc-CCcc---ccccc-CcCCCcHHHHHHHHHHHhcCC---CEEEEcCcccccCHHHH--HHHHHHH
Confidence                  1111111111 0001   00011 369999999999999999888   4666   8899998876  6666655


Q ss_pred             hc
Q 027090          162 GH  163 (228)
Q Consensus       162 ~~  163 (228)
                      .+
T Consensus       169 ~~  170 (200)
T d1sgwa_         169 LE  170 (200)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=2.9e-12  Score=93.66  Aligned_cols=166  Identities=16%  Similarity=0.111  Sum_probs=92.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      +.+|+++|..|||||||++.+.....+..+         ..... .......+.++||.|-.           .+.....
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~---------~~~~~-~~~~~~~~~i~D~~Gq~-----------~~~~~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTG---------IVETH-FTFKDLHFKMFDVGGQR-----------SERKKWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCS---------EEEEE-EEETTEEEEEEEECCSG-----------GGGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcc---------EEEEE-EEeeeeeeeeecccccc-----------ccccchh
Confidence            468999999999999999998754432111         11112 22567789999999922           2233344


Q ss_pred             hccCCccEEEEEEeCCCCCCH--------HHHH----HHHHHHHHhCccccccEEEEEeCCCCCccc--hhhHHHHh-hc
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQ--------EEET----AVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFL-GH  163 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~--------~~~~----~l~~~~~~~~~~~~~~~llv~~~~D~~~~~--~~~~~~~~-~~  163 (228)
                      .....+++++++++.+...+.        ....    +..++.......  .|+++++||.|.....  ...+.... ..
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~--~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~  138 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD--TSIILFLNKKDLFEEKIKKSPLTICYPEY  138 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTT--SEEEEEEECHHHHHHHTTTSCGGGTCTTC
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCC--CCEEEEeccchhhhhhccchHHHHHhhhh
Confidence            566789999999998622211        1112    222222222222  3899999999864320  00010000 00


Q ss_pred             cCCchHH--------HHHHhc---C-CeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          164 ECPKPLK--------EILQLC---D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       164 ~~~~~~~--------~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .......        .+.+..   . +.++.+    ..+|.++.+++++++.+.+++..+
T Consensus       139 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~----~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         139 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             CSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHHHhcccCCCcceeE----EEEeECCHhHHHHHHHHHHHHHhc
Confidence            0011111        111111   1 122222    247888999999999998877653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=9.4e-12  Score=91.39  Aligned_cols=114  Identities=16%  Similarity=0.069  Sum_probs=67.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+++|..|||||||++.+.-    ...   ...|........ ......+.++|++|..           .......
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f----~~~---~~pTiG~~~~~~-~~~~~~~~~~D~~gq~-----------~~~~~~~   62 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI----IHG---QDPTKGIHEYDF-EIKNVPFKMVDVGGQR-----------SERKRWF   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH----HHS---CCCCSSEEEEEE-EETTEEEEEEEECC------------------CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc----CCC---CCCeeeeEEEEE-eeeeeeeeeeccccee-----------eeccccc
Confidence            36899999999999999999931    111   122333333332 3567789999999922           2223334


Q ss_pred             hccCCccEEEEEEeCCCCCCH--------HHHHHHHHHHHHhCcc--ccccEEEEEeCCCCCc
Q 027090           99 MAKDGIHAFLVVFSVTNRFSQ--------EEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLE  151 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s~--------~~~~~l~~~~~~~~~~--~~~~~llv~~~~D~~~  151 (228)
                      ...+..++++++++.+...+.        .....+.+....+..+  ...|++|++||+|...
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            556788999999998733221        1122223333322211  2238999999999754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.2e-11  Score=90.72  Aligned_cols=169  Identities=16%  Similarity=0.124  Sum_probs=95.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+++|..|||||||++.+.....      ...+|.-...... ......+.++|++|...           +.....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~------~~~pTiG~~~~~~-~~~~~~~~~~d~~g~~~-----------~~~~~~   63 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG------SGVPTTGIIEYPF-DLQSVIFRMVDVGGQRS-----------ERRKWI   63 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS------SCCCCCSCEEEEE-ECSSCEEEEEECCCSTT-----------GGGGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC------CCCceeeEEEEEE-eccceeeeecccccccc-----------cccccc
Confidence            46899999999999999999975542      1223332222222 24567799999999432           222333


Q ss_pred             hccCCccEEEEEEeCCCCCC-----------HHHHH-HHHHHHHHhCccccccEEEEEeCCCCCccc--hhhHHHHhhcc
Q 027090           99 MAKDGIHAFLVVFSVTNRFS-----------QEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHE  164 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~s-----------~~~~~-~l~~~~~~~~~~~~~~~llv~~~~D~~~~~--~~~~~~~~~~~  164 (228)
                      .....++.++++++.....+           .+... +..++.......  .|+++++||.|+....  ...+.......
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~--~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~  141 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN--SSVILFLNKKDLLEEKIMYSHLVDYFPEY  141 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSS--SEEEEEEECHHHHHHHTTTSCHHHHSTTC
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccC--ccEEEecchhhhhhhcccchHHHHhcccc
Confidence            45678899999999862211           11122 333333332222  3789999999975330  01122222111


Q ss_pred             C--CchHHH--------HHH---hcCCeEEEeeCCCcccccchHHHHHHHHHHHHHHHhc
Q 027090          165 C--PKPLKE--------ILQ---LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN  211 (228)
Q Consensus       165 ~--~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  211 (228)
                      .  .+....        ..+   ..+..++.+    ..+|.++.+++++++.|.+.+.++
T Consensus       142 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~----~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         142 DGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             CSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEE----ECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHhcccCCCceEEE----EeEEEcCHhHHHHHHHHHHHHHHH
Confidence            1  111111        111   112223332    237888999999999998887753

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.20  E-value=2.8e-11  Score=90.74  Aligned_cols=118  Identities=20%  Similarity=0.212  Sum_probs=69.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC---Cccc--------------------------ccCCCCCcceeeEeEeeeeeCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR---KAFK--------------------------ASAGSSGVTKTCEMKTTVLKDG   68 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~---~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~   68 (228)
                      +..+|+++|+.++|||||+.+|+..   ....                          ........+........ ..+.
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~-~~~~   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF-ETKK   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE-ECSS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEE-ecCC
Confidence            3478999999999999999988521   1000                          00111223333322222 2566


Q ss_pred             cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCccccccEE
Q 027090           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI  141 (228)
Q Consensus        69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~-------~~~~~l~~~~~~~~~~~~~~~l  141 (228)
                      ..+.++||||..+           +...+.....-+|.+++|+++.++...       ..++.+.++.. ++.+   +++
T Consensus        81 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~~---~iI  145 (224)
T d1jnya3          81 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QLI  145 (224)
T ss_dssp             CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TCE
T ss_pred             ceeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCCC---ceE
Confidence            7899999999654           344444455567999999999865322       23333444433 2333   688


Q ss_pred             EEEeCCCCCc
Q 027090          142 VVFTGGDDLE  151 (228)
Q Consensus       142 lv~~~~D~~~  151 (228)
                      +++||+|...
T Consensus       146 v~iNK~D~~~  155 (224)
T d1jnya3         146 VAVNKMDLTE  155 (224)
T ss_dssp             EEEECGGGSS
T ss_pred             EEEEcccCCC
Confidence            8999999874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.20  E-value=2.6e-12  Score=97.61  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=64.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHH---hCCCccc--------c------------------cCCCCCcceeeEeEeeeeeCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSI---LGRKAFK--------A------------------SAGSSGVTKTCEMKTTVLKDG   68 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l---~g~~~~~--------~------------------~~~~~~~t~~~~~~~~~~~~~   68 (228)
                      +..+|+++|+.++|||||+.+|   +|.....        +                  .......+....... ..+..
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~-~~~~~  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY-FETEH  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE-EECSS
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc-ccccc
Confidence            3457999999999999999998   3321100        0                  000111222222222 22456


Q ss_pred             cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCccccccEE
Q 027090           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI  141 (228)
Q Consensus        69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------s~~~~~~l~~~~~~~~~~~~~~~l  141 (228)
                      ..+.++||||..+           +...+......+|.+++|+++..+.       ....+..+.++..+ +-+   +++
T Consensus       102 ~~i~~iDtPGH~d-----------f~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~-~i~---~ii  166 (245)
T d1r5ba3         102 RRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-GIN---HLV  166 (245)
T ss_dssp             EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-TCS---SEE
T ss_pred             ceeeeeccccccc-----------chhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc-CCC---eEE
Confidence            6799999999554           3333333445779999999997442       22344555444433 333   688


Q ss_pred             EEEeCCCCCc
Q 027090          142 VVFTGGDDLE  151 (228)
Q Consensus       142 lv~~~~D~~~  151 (228)
                      +++||+|...
T Consensus       167 v~iNKmD~~~  176 (245)
T d1r5ba3         167 VVINKMDEPS  176 (245)
T ss_dssp             EEEECTTSTT
T ss_pred             EEEEcCCCCc
Confidence            8999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=4.4e-10  Score=87.62  Aligned_cols=128  Identities=15%  Similarity=0.181  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCC-cceeeEeEe-------------------------------------
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKT-------------------------------------   62 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~-------------------------------------   62 (228)
                      .|+|+|.-++|||||||+|+|.....++....+ ..+...+..                                     
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTN  107 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSST
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCCC
Confidence            799999999999999999999886434322111 111111110                                     


Q ss_pred             -----------eeeeCCcEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhhccCC-ccEEEEEEeCCCCCCHHHHHHHHHH
Q 027090           63 -----------TVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCLGMAKDG-IHAFLVVFSVTNRFSQEEETAVHRL  128 (228)
Q Consensus        63 -----------~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~il~v~~~~~~~s~~~~~~l~~~  128 (228)
                                 .....-..+.++||||+........  .....+.......... -+.++++.++...++..+..  .++
T Consensus       108 ~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~--~~~  185 (299)
T d2akab1         108 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL--KIA  185 (299)
T ss_dssp             TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH--HHH
T ss_pred             cCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH--HHH
Confidence                       0000112478999999986543221  1112222222222223 35666777776555554433  444


Q ss_pred             HHHhCccccccEEEEEeCCCCCcc
Q 027090          129 PNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus       129 ~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      ...-...  .++++|+||+|....
T Consensus       186 ~~~~~~~--~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEVDPQG--QRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHCTTC--SSEEEEEECGGGSCT
T ss_pred             HHhCcCC--CceeeEEeccccccc
Confidence            4432222  379999999998764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.10  E-value=2.9e-10  Score=89.01  Aligned_cols=25  Identities=32%  Similarity=0.608  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAF   45 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~   45 (228)
                      .|+|+|..++|||||||+|+|....
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            7999999999999999999998753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.08  E-value=1.1e-10  Score=88.04  Aligned_cols=127  Identities=16%  Similarity=0.000  Sum_probs=63.8

Q ss_pred             cEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCC
Q 027090           69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD  148 (228)
Q Consensus        69 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D  148 (228)
                      ..+.++|+||..+..     ........+ ......+.+++++++.............+...........|.++++||+|
T Consensus        95 ~~~~~id~~g~~~~~-----~~~~~~~~~-~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETF-----LFHEFGVRL-MENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHH-----HHSHHHHHH-HHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred             cceeeeccccchhHH-----HHHHHHHHH-HhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence            348899999954310     000111111 11235678888998874445444332222211111111126899999999


Q ss_pred             CCccchhhHHHHhhccC------------C-------chHHHHHHhcCCeEEEeeCCCcccccchHHHHHHHHHHHHH
Q 027090          149 DLEDHEKTLEDFLGHEC------------P-------KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV  207 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  207 (228)
                      ....  .+.........            .       +.+....+....    .-+.++.||.+++++++|++.|.++
T Consensus       169 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         169 LLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             GCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCC----CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            8865  43332221100            0       011111111111    1134567888999999999998876

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=3.3e-11  Score=95.08  Aligned_cols=87  Identities=14%  Similarity=0.029  Sum_probs=43.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeee------------------------eCCcEEEEEeC
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------------------------KDGQVVNVIDT   76 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~~~iDt   76 (228)
                      +|+|+|.++||||||+|+|+|...   .+.+++.||-....+...                        .....+.++|+
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~---~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~   78 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDV---EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCC---chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence            699999999999999999999864   344555454322111100                        11134899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090           77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (228)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (228)
                      ||+.......+    ......-...+.+|++++|+++.
T Consensus        79 pGli~ga~~g~----~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          79 AGLVPGAHEGR----GLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETT
T ss_pred             CCcccchhccc----chHHHHHHhhccceEEEEEeccc
Confidence            99876543222    22222233457889999999985

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=1.8e-10  Score=86.03  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=70.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+|+++|..|||||||++.+.....        ..|+-...... ..++..+.++|+.|-...           .....
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~--------~pTiG~~~~~~-~~~~~~~~~~D~~Gq~~~-----------r~~w~   65 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV--------VLTSGIFETKF-QVDKVNFHMFDVGGQRDE-----------RRKWI   65 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC--------CCCCSCEEEEE-EETTEEEEEEECCCSTTT-----------TTGGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc--------CCCCCeEEEEE-EECcEEEEEEecCcccee-----------ccchh
Confidence            36899999999999999999853322        12222222222 256778999999994332           12223


Q ss_pred             hccCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhCccc--cccEEEEEeCCCCCcc
Q 027090           99 MAKDGIHAFLVVFSVTNR--------FSQEEETAVHRLPNLFGKNV--FDYMIVVFTGGDDLED  152 (228)
Q Consensus        99 ~~~~~~~~il~v~~~~~~--------~s~~~~~~l~~~~~~~~~~~--~~~~llv~~~~D~~~~  152 (228)
                      ...+.+++++++++.+..        ........+.+....+..+.  ..|++|++||+|+.+.
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            445688999999998721        11222233344444444331  2389999999998653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.05  E-value=2.6e-10  Score=88.89  Aligned_cols=90  Identities=14%  Similarity=0.113  Sum_probs=61.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeC-----------------CcEEEEEeCCCCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-----------------GQVVNVIDTPGLFD   81 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~~iDtpG~~~   81 (228)
                      +.+|+|+|.++||||||+|+||+...  ..+.+++.||...........                 ...+.++|.||+..
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~--~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVL--GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTT--TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCC--CCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            37899999999999999999998754  223455555533222221111                 23578999999887


Q ss_pred             CCCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090           82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (228)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (228)
                      .......+..++...+.    ..|+++.|+++.
T Consensus        88 gA~~g~GLGn~fL~~ir----~~d~lihVV~~f  116 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVR----AVDAIYQVVRAF  116 (296)
T ss_dssp             CCCSSSSSCHHHHHHHT----TCSEEEEEEECC
T ss_pred             ccccccccHHHHHHHhh----ccceeEEEEecc
Confidence            66555444445555554    559999999885

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=6e-10  Score=82.50  Aligned_cols=63  Identities=25%  Similarity=0.261  Sum_probs=38.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccC-----CCCCcceee-EeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKTC-EMKTTVLKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~-----~~~~~t~~~-~~~~~~~~~~~~~~~iDtpG~~~~~~   84 (228)
                      +++..+++|++|+|||||||+|.+.....++.     ..+--||.. ..+.   . .....++||||+.+...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~---l-~~gg~iiDTPG~r~~~l  162 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK---F-DFGGYVVDTPGFANLEI  162 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE---C-TTSCEEESSCSSTTCCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEE---E-CCCcEEEeCCccccccc
Confidence            35789999999999999999999875433321     111122222 2221   1 12257999999976654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=3.6e-10  Score=87.29  Aligned_cols=88  Identities=16%  Similarity=0.107  Sum_probs=53.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCC-----------------cEEEEEeCCCCCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDL   82 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~~iDtpG~~~~   82 (228)
                      .+|+|||.++||||||+|+|++...   ...+++.|+-....+......                 -.+.++|.||+...
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~---~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGI---EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCC---ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            5899999999999999999998764   233444444322222221111                 23779999998765


Q ss_pred             CCCcHHHHHHHHHHHhhccCCccEEEEEEeCC
Q 027090           83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT  114 (228)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (228)
                      ...-+-+..++.+.+.    +.|+++.|++..
T Consensus        80 a~~g~Glg~~FL~~ir----~~d~LihVVr~f  107 (278)
T d1jala1          80 ASKGEGLGNKFLANIR----ETDAIGHVVRCF  107 (278)
T ss_dssp             HHHHGGGTCCHHHHHH----TCSEEEEEEECS
T ss_pred             cccCCCccHHHHHHHH----hccceEEEeecc
Confidence            4322222233444444    569999999874

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.92  E-value=1.4e-09  Score=83.67  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=43.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF   88 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~   88 (228)
                      ..+...+++|+|.++||||||||+|.|.....++  ..+.+|.....   ...+..+.++||||+.-.....++
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~--~~pG~Tr~~~~---i~~~~~~~l~DTPGi~~p~~~~~~  176 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG--DRPGITTSQQW---VKVGKELELLDTPGILWPKFEDEL  176 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CC---EEETTTEEEEECCCCCCSCCCCHH
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEEC--CcccccccceE---EECCCCeEEecCCCccccCCccHH
Confidence            3456689999999999999999999998763333  33333332211   123456899999999766555443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2e-09  Score=84.55  Aligned_cols=91  Identities=7%  Similarity=0.065  Sum_probs=48.8

Q ss_pred             CccEEEEEEeCCCCCCHHHHHHH-HHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEE
Q 027090          103 GIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV  181 (228)
Q Consensus       103 ~~~~il~v~~~~~~~s~~~~~~l-~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
                      .+|.+++++...   .+.+.+.+ .-+...       +-++|+||+|....  .........     +...........-
T Consensus       167 ~aD~~l~v~~P~---~Gd~iq~~k~gi~e~-------aDi~VvNKaD~~~~--~~~~~~~~~-----~~~al~~~~~~~~  229 (327)
T d2p67a1         167 MVDCFISLQIAG---GGDDLQGIKKGLMEV-------ADLIVINKDDGDNH--TNVAIARHM-----YESALHILRRKYD  229 (327)
T ss_dssp             TCSEEEEEECC---------CCCCHHHHHH-------CSEEEECCCCTTCH--HHHHHHHHH-----HHHHHHHSCCSBT
T ss_pred             ccceEEEEecCC---Cchhhhhhchhhhcc-------ccEEEEEeecccch--HHHHHHHHH-----HHHHhhhcccCCC
Confidence            458888887654   22333322 222222       35678899998765  444433333     3444433222110


Q ss_pred             Ee-eCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          182 LF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       182 ~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      .+ ...+..||.++.++++|.+.|.++...
T Consensus       230 ~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         230 EWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             TBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence            11 123446888999999999999876653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.85  E-value=4.9e-10  Score=83.25  Aligned_cols=63  Identities=29%  Similarity=0.347  Sum_probs=35.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCCcccccC-----CCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA   84 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   84 (228)
                      +++..+++|++|+|||||||+|.+......+.     ..+--||...... . .++  -.++||||+.+...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~-~-~~g--g~iiDTPG~r~~~l  163 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI-H-TSG--GLVADTPGFSSLEF  163 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE-E-ETT--EEEESSCSCSSCCC
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEE-e-cCC--CEEEECCccccccc
Confidence            45688999999999999999999975433321     1111232222221 1 222  46899999976553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=1.3e-08  Score=74.74  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceee------------------EeEee-------------
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC------------------EMKTT-------------   63 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~------------------~~~~~-------------   63 (228)
                      +..++.+|+++|++|+||||.+-.|..... ..+....-++.+.                  ..+..             
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~   85 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA   85 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHH
Confidence            445567999999999999999877753211 1111000011110                  00000             


Q ss_pred             ---eeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcc----CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccc
Q 027090           64 ---VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK----DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV  136 (228)
Q Consensus        64 ---~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~  136 (228)
                         ...++..+.+|||||....   +.+...++........    ..++..++|+++..     ...-+..+...+..-.
T Consensus        86 ~~~~~~~~~d~ilIDTaGr~~~---d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~-----~~~~~~~~~~~~~~~~  157 (213)
T d1vmaa2          86 VAHALARNKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT-----GQNGLVQAKIFKEAVN  157 (213)
T ss_dssp             HHHHHHTTCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG-----HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCCEEEEeccccccc---hHHHHHHHHHHHhhhhhccccccceeEEeecccc-----CcchhhhhhhhccccC
Confidence               0012345899999995543   4444444444433221    23678899999862     1222222222222121


Q ss_pred             cccEEEEEeCCCCCcc
Q 027090          137 FDYMIVVFTGGDDLED  152 (228)
Q Consensus       137 ~~~~llv~~~~D~~~~  152 (228)
                        +-=+++||+|....
T Consensus       158 --~~~lI~TKlDe~~~  171 (213)
T d1vmaa2         158 --VTGIILTKLDGTAK  171 (213)
T ss_dssp             --CCEEEEECGGGCSC
T ss_pred             --CceEEEecccCCCc
Confidence              45578999998654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.73  E-value=1.1e-08  Score=75.09  Aligned_cols=128  Identities=13%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEe------------------e----e-------
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT------------------T----V-------   64 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~------------------~----~-------   64 (228)
                      .|.+.+.+|+++|++|+||||++-.|..... ..+....-+|.+.....                  .    .       
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~   85 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYK-KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKR   85 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHHH-HTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHH
Confidence            3445667899999999999999887763211 11111001111100000                  0    0       


Q ss_pred             -----eeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcccccc
Q 027090           65 -----LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY  139 (228)
Q Consensus        65 -----~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~  139 (228)
                           ...+..+.+|||||..... .......++.......  .++.+++|+++....  ............   ..  .
T Consensus        86 a~~~~~~~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~--~~~~~~~~~~~~---~~--~  155 (211)
T d1j8yf2          86 GVEKFLSEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIGQ--KAYDLASKFNQA---SK--I  155 (211)
T ss_dssp             HHHHHHHTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGG--GHHHHHHHHHHH---CT--T
T ss_pred             HHHHhhccCCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccCc--chHHHHhhhhcc---cC--c
Confidence                 0133468999999974332 1122223444433332  457888999987322  222222222222   21  3


Q ss_pred             EEEEEeCCCCCcc
Q 027090          140 MIVVFTGGDDLED  152 (228)
Q Consensus       140 ~llv~~~~D~~~~  152 (228)
                      -=+++||+|....
T Consensus       156 ~~lI~TKlDet~~  168 (211)
T d1j8yf2         156 GTIIITKMDGTAK  168 (211)
T ss_dssp             EEEEEECTTSCSC
T ss_pred             ceEEEecccCCCc
Confidence            4467999998755

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.68  E-value=2.6e-08  Score=72.89  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=41.6

Q ss_pred             CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh----ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEE
Q 027090           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM----AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV  143 (228)
Q Consensus        68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv  143 (228)
                      +..+.+|||||....   +....+++......    ....++.+++|+++...  ..+..........++     +-=++
T Consensus        88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI  157 (207)
T d1okkd2          88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVG-----LTGVI  157 (207)
T ss_dssp             TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHC-----CSEEE
T ss_pred             CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC--chHHHHHHHhhhccC-----CceEE
Confidence            346799999996543   33333444333321    12356888999998732  222222222222222     34568


Q ss_pred             EeCCCCCcc
Q 027090          144 FTGGDDLED  152 (228)
Q Consensus       144 ~~~~D~~~~  152 (228)
                      +||+|....
T Consensus       158 ~TKlDet~~  166 (207)
T d1okkd2         158 VTKLDGTAK  166 (207)
T ss_dssp             EECTTSSCC
T ss_pred             EeccCCCCC
Confidence            999998754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=3.2e-08  Score=72.44  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +...+|+++|++|+||||.+-.|..
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3346899999999999999988763

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.58  E-value=5.3e-08  Score=71.29  Aligned_cols=73  Identities=19%  Similarity=0.140  Sum_probs=42.0

Q ss_pred             CcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCC
Q 027090           68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG  147 (228)
Q Consensus        68 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~  147 (228)
                      ...+.+|||||....   +....+++.......  .++.+++|+++...  ....   +.+..+...-.  .-=+++||+
T Consensus        92 ~~d~vlIDTaGr~~~---d~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~---~~~~~f~~~~~--~~~~I~TKl  159 (207)
T d1ls1a2          92 ARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEAL---SVARAFDEKVG--VTGLVLTKL  159 (207)
T ss_dssp             TCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHH---HHHHHHHHHTC--CCEEEEECG
T ss_pred             cCcceeecccccchh---hhhhHHHHHHHHhhc--CCceEEEEeccccc--hhHH---HHHHHHHhhCC--CCeeEEeec
Confidence            346789999996543   444445665554433  56788899888622  2222   33333221111  244678999


Q ss_pred             CCCcc
Q 027090          148 DDLED  152 (228)
Q Consensus       148 D~~~~  152 (228)
                      |....
T Consensus       160 De~~~  164 (207)
T d1ls1a2         160 DGDAR  164 (207)
T ss_dssp             GGCSS
T ss_pred             Ccccc
Confidence            97654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.57  E-value=7.9e-08  Score=75.21  Aligned_cols=93  Identities=10%  Similarity=0.050  Sum_probs=47.1

Q ss_pred             CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHhhccCCchHHHHHHhcCCeEEE
Q 027090          103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL  182 (228)
Q Consensus       103 ~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
                      .+|..++++...   .+.+.+.++....-.      .-++|+||+|....  ......+..    .+...........-.
T Consensus       164 ~~D~~v~v~~p~---~GD~iQ~~k~gilE~------aDi~vvNKaD~~~~--~~~~~~~~~----~~~~~l~~~~~~~~~  228 (323)
T d2qm8a1         164 LTDFFLVLMLPG---AGDELQGIKKGIFEL------ADMIAVNKADDGDG--ERRASAAAS----EYRAALHILTPPSAT  228 (323)
T ss_dssp             TSSEEEEEECSC---C------CCTTHHHH------CSEEEEECCSTTCC--HHHHHHHHH----HHHHHHTTBCCSBTT
T ss_pred             ccceEEEEeecc---chhhhhhhhhhHhhh------hheeeEeccccccc--hHHHHHHHH----HHHHHhhcccccccC
Confidence            457888887765   234444322211111      36788999997654  443332222    122222222111100


Q ss_pred             e-eCCCcccccchHHHHHHHHHHHHHHHh
Q 027090          183 F-DNKTKDEAKGTEQVRQLLSLVNSVIVQ  210 (228)
Q Consensus       183 ~-~~~~~~~~~~~~~~~~l~~~i~~~~~~  210 (228)
                      + ...+..|+.++.++++|.+.|+++...
T Consensus       229 ~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         229 WTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             BCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            1 123446778889999999999887654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=4.4e-06  Score=63.63  Aligned_cols=109  Identities=22%  Similarity=0.241  Sum_probs=62.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCCcceeeEeEee--eeeCCcEEEEEeCCCCCCCCCCcHHHHHHH
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEI   93 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   93 (228)
                      .+-..|+|+|+.++|||||+|.|+|... +..+.....+|.-......  .......+.++||.|+.+...........+
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~i  109 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI  109 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHHH
Confidence            3456899999999999999999998753 2333333345544433222  222445689999999987543222111222


Q ss_pred             HH-HHhhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 027090           94 VK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL  131 (228)
Q Consensus        94 ~~-~~~~~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~  131 (228)
                      +. .+..+    +++|+-..  ........+.+..+...
T Consensus       110 ~~l~~llS----s~~i~N~~--~~~~~~~l~~L~~~~~~  142 (277)
T d1f5na2         110 FALAVLLS----STFVYNSI--GTINQQAMDQLYYVTEL  142 (277)
T ss_dssp             HHHHHHHC----SEEEEEEE--SCSSHHHHHTTHHHHTH
T ss_pred             HHHHHHHh----CEEEEecc--ccCcHHHHHHHHHHHHH
Confidence            22 12222    55555544  34566665555544443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.13  E-value=5e-07  Score=64.11  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcc
Q 027090           21 TVVLLGRTGNGKSATGNSILGRKAF   45 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~~~~   45 (228)
                      +|+|+|+||+|||||++.|++...+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            7999999999999999999986553

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=1.8e-05  Score=59.69  Aligned_cols=81  Identities=15%  Similarity=0.168  Sum_probs=45.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+++|+|++|+|||+++..|.....  .+.  .+          ....+..+.-+|...+........++.+.+...+.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~--~~~--vp----------~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~  104 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIV--QGD--VP----------EVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLK  104 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHH--HTC--SC----------GGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHH--hCC--cc----------cccccceeEEeeechHhccCccchhHHHHHHHHHH
Confidence            35899999999999999999875433  111  01          11334456666776666555444445444544444


Q ss_pred             hccCCccEEEEEEeC
Q 027090           99 MAKDGIHAFLVVFSV  113 (228)
Q Consensus        99 ~~~~~~~~il~v~~~  113 (228)
                      .....-+.++|+-++
T Consensus       105 ~~~~~~~iIlfiDei  119 (268)
T d1r6bx2         105 QLEQDTNSILFIDEI  119 (268)
T ss_dssp             HHSSSSCEEEEETTT
T ss_pred             HhhccCCceEEecch
Confidence            333344455555444

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.80  E-value=4.5e-06  Score=59.14  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++|+|+|++|||||||.+.|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            379999999999999999999753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=7.1e-06  Score=57.28  Aligned_cols=22  Identities=14%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++|+|++|||||||++.|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999999853

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.70  E-value=1.3e-05  Score=56.09  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+++.+|+|.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999743

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.60  E-value=1.8e-05  Score=55.31  Aligned_cols=23  Identities=13%  Similarity=0.179  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.++|+|.+|||||||++.|...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            57899999999999999998754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=2e-05  Score=56.01  Aligned_cols=24  Identities=38%  Similarity=0.450  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      |+.|+|+||+||||||+++.|...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            568999999999999999999754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.56  E-value=2.8e-05  Score=55.66  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=22.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+++.+|+|+|++||||||+.+.|..
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34557999999999999999999864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.53  E-value=2.8e-05  Score=55.50  Aligned_cols=24  Identities=29%  Similarity=0.428  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           17 NGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      +++.+|+|+|++||||||..+.|.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            466799999999999999999997

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.52  E-value=2.9e-05  Score=53.11  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +.|+|.|++|||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998853

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.4e-05  Score=55.03  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      +.|.|.|++|+|||||+..+....
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            479999999999999999997553

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=4.6e-05  Score=53.09  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.+...++|+|++||||||+.+.|...
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999999753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.46  E-value=3.6e-05  Score=54.30  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +.|+|.|++||||||+++.|..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.43  E-value=3.1e-05  Score=53.97  Aligned_cols=21  Identities=29%  Similarity=0.623  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+|+|++||||||+.+.|.-
T Consensus         6 ~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999963

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=6e-05  Score=53.01  Aligned_cols=25  Identities=36%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      .+....|+++|.+||||||+.+.+.
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3455799999999999999999885

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.42  E-value=4.8e-05  Score=53.14  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++.|+|.|++||||||+.+.|...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=4.7e-05  Score=55.17  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      |..++|+||+|||||||++.|+..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            578999999999999999999754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.39  E-value=4.9e-05  Score=52.84  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.|+|.|++||||||+.+.|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.37  E-value=0.00014  Score=56.36  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKA   44 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~   44 (228)
                      .+|+|.|++|||||||+|+|++...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            4699999999999999999997654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=5.7e-05  Score=53.99  Aligned_cols=82  Identities=18%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG   98 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   98 (228)
                      ..+++++|++|+|||+++..|.....  .+.  .+          ....+..+.-+|...+........++.+.+...+.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~--~~~--vp----------~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~  108 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRII--NGE--VP----------EGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN  108 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH--HTC--SC----------GGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHH--hCC--CC----------HHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHH
Confidence            35899999999999999999875433  111  01          11345567777876665554444455455555554


Q ss_pred             hc-cCCccEEEEEEeCC
Q 027090           99 MA-KDGIHAFLVVFSVT  114 (228)
Q Consensus        99 ~~-~~~~~~il~v~~~~  114 (228)
                      .. ...-++++|+-++.
T Consensus       109 e~~~~~~~iILfIDeih  125 (195)
T d1jbka_         109 DLAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHHSTTTEEEEEETGG
T ss_pred             HHhcCCCcEEEEcchHH
Confidence            32 23346677776654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=8.6e-05  Score=53.11  Aligned_cols=26  Identities=19%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ++..+|+|+|++||||||+...|+..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999999753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.34  E-value=7.3e-05  Score=53.19  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ....|+|-|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999963

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=5.4e-05  Score=52.06  Aligned_cols=23  Identities=35%  Similarity=0.679  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.|.|+|++||||||+-+.|...
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=7e-05  Score=52.97  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.|+|+||+|+|||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.30  E-value=9.8e-05  Score=51.56  Aligned_cols=27  Identities=22%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...+.+|.|+|.+||||||+-+.|...
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            355688999999999999999998743

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.30  E-value=6.3e-05  Score=53.57  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.+|+|+|++||||||+.+.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.28  E-value=8.5e-05  Score=51.76  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.|+|.|++||||||+.+.|...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999999754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=7.4e-05  Score=53.15  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      -|+|+||+|||||||++.|...
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=9.8e-05  Score=53.18  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..|+++|.+||||||+.+.|+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.21  E-value=9.5e-05  Score=52.05  Aligned_cols=21  Identities=33%  Similarity=0.665  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+|+|++||||||+.+.|.-
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.00065  Score=46.63  Aligned_cols=62  Identities=23%  Similarity=0.236  Sum_probs=38.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   81 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   81 (228)
                      ..++..|++-|+-|||||||++.++...-....+.+.+.+....+.    .....+.=+|.--+.+
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~~Y~----~~~~~i~H~DlYRl~~   91 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYN----IAGKMIYHFDLYRLAD   91 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEE----ETTEEEEEEECTTCSC
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEEEeec----cCCceEEEEEEeccCC
Confidence            3466799999999999999999987554332334444444333221    2344566677555443

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.17  E-value=9.7e-05  Score=51.23  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ++|+|+|++||||||+-+.|..
T Consensus         1 k~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.16  E-value=0.00013  Score=52.16  Aligned_cols=29  Identities=24%  Similarity=0.264  Sum_probs=24.3

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +..+++..|+|-|..||||||+++.|...
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            34556679999999999999999999753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.14  E-value=0.00012  Score=54.92  Aligned_cols=26  Identities=23%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      .++-|+|.|++|||||||.++|.+..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            44679999999999999999998653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00012  Score=52.17  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 027090           22 VVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~   42 (228)
                      |+|+||+|||||||.+.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.11  E-value=0.00014  Score=51.37  Aligned_cols=22  Identities=32%  Similarity=0.691  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +|+|+|++||||||+.+.|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998743

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.11  E-value=0.00015  Score=51.81  Aligned_cols=25  Identities=20%  Similarity=0.514  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +...|.|+|++||||||+.+.|...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999999643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.09  E-value=0.00014  Score=51.26  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.|+|.|.+||||||+++.|...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57888999999999999999643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0021  Score=47.82  Aligned_cols=24  Identities=29%  Similarity=0.623  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+.+++.||+|+|||+++++|...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            357999999999999999999843

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.07  E-value=0.0002  Score=50.99  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ...+|+|+|++||||||+...|.-.
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999743

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.00016  Score=50.88  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00018  Score=52.14  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998854

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=2.7e-05  Score=55.72  Aligned_cols=20  Identities=35%  Similarity=0.493  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027090           21 TVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~   40 (228)
                      ..+|+|+|||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            56789999999999999984

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00018  Score=50.50  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+|+|++||||||..+.|.-
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999998863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00021  Score=50.35  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+|+|+|++||||||+.+.|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999964

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00023  Score=50.65  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+|+|+|++||||||..+.|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.00016  Score=50.16  Aligned_cols=21  Identities=38%  Similarity=0.645  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+|+|.+||||||+-+.|..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            578889999999999999863

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.0002  Score=54.73  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l   39 (228)
                      ..+|+|+|||||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            6789999999999999988

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00014  Score=51.53  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+..|.|+|.+||||||+-+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999999964

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.86  E-value=0.00028  Score=49.15  Aligned_cols=21  Identities=19%  Similarity=0.555  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ..|+|+|++||||||+-+.|.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHH
Confidence            357899999999999999985

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.83  E-value=0.00052  Score=54.31  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=38.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCCcceeeEeEeeeeeCCcEEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 027090           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM   99 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~   99 (228)
                      .+++|||++|+|||+++..|.....  .+..  +.          ...+..+.-+|...+........++.+.+...+..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i~--~~~v--p~----------~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~  109 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRIV--KGDV--PE----------GLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQE  109 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHH--HTCS--CT----------TSTTCEEEEECC-----------CHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHHH--hCCC--CH----------HHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHH
Confidence            4689999999999999988764432  2211  10          13344566677766655443333343444444332


Q ss_pred             ccC-CccEEEEEEeCC
Q 027090          100 AKD-GIHAFLVVFSVT  114 (228)
Q Consensus       100 ~~~-~~~~il~v~~~~  114 (228)
                      ... ...+|+|+-++.
T Consensus       110 ~~~~~~~~ilfide~h  125 (387)
T d1qvra2         110 VVQSQGEVILFIDELH  125 (387)
T ss_dssp             HHTTCSSEEEEECCC-
T ss_pred             hccCCCceEEEeccHH
Confidence            222 235566665543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00052  Score=50.76  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ......++|.||+|+||||++.+|+..
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            344468999999999999999999864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00043  Score=49.04  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +..|+|.|..||||||+.+.|.-
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998853

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.00034  Score=51.46  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..+++.||+|+||||+.+++.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999854

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.00047  Score=52.98  Aligned_cols=25  Identities=20%  Similarity=0.458  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +...++++||+|||||.|.++|...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            3467899999999999999999753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.69  E-value=0.00062  Score=50.56  Aligned_cols=25  Identities=32%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ....++|.|++|+||||+++.|...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999998754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.68  E-value=0.00061  Score=50.53  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..-|++.||+|+|||++.++|...
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            467999999999999999999753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00055  Score=54.38  Aligned_cols=19  Identities=32%  Similarity=0.545  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 027090           21 TVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l   39 (228)
                      ..+|+|+|||||||++.+|
T Consensus        27 l~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5679999999999999998

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.60  E-value=0.00077  Score=48.64  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..++..|-|.|.+||||||+.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45778999999999999999999864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.0006  Score=50.01  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..+++.||+|+||||+.++|...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            36899999999999999999754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00051  Score=50.33  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+.|+|-|+.||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.51  E-value=0.0009  Score=48.81  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..++|.||+|+||||++++|...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999999998754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00087  Score=48.20  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +++.|+|-|..||||||+++.|..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0011  Score=50.68  Aligned_cols=26  Identities=19%  Similarity=0.234  Sum_probs=22.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+....|+|.|++|||||||.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            45568999999999999999888753

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.44  E-value=0.00097  Score=48.20  Aligned_cols=23  Identities=22%  Similarity=0.302  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+|+|-||+||||||.-..|...
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999998643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00095  Score=48.14  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +++.|+|-|..||||||+++.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999988854

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.0012  Score=49.19  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +-+++.||+|+|||++++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            56999999999999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.37  E-value=0.0076  Score=45.05  Aligned_cols=53  Identities=9%  Similarity=0.071  Sum_probs=37.1

Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHHHh
Q 027090          100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL  161 (228)
Q Consensus       100 ~~~~~~~il~v~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~~~  161 (228)
                      ..+.+|++++|+|+..+++......-+++    ..   ||.++|+||+|+...  .....+.
T Consensus        12 ~i~~~DvIl~V~DaR~P~ss~~~~l~~~~----~~---Kp~IlVlNK~DLv~~--~~~~~w~   64 (273)
T d1puja_          12 KLKLIDIVYELVDARIPMSSRNPMIEDIL----KN---KPRIMLLNKADKADA--AVTQQWK   64 (273)
T ss_dssp             HGGGCSEEEEEEETTSTTTTSCHHHHHHC----SS---SCEEEEEECGGGSCH--HHHHHHH
T ss_pred             HHHhCCEEEEEEECCCCCCCCCHHHHHHH----cC---CCeEEEEECccCCch--HHHHHHH
Confidence            34466999999999877777665543333    22   489999999999876  5444433

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.35  E-value=0.0011  Score=49.35  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ...++|.|+.|+|||||++.++.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            35789999999999999998863

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.0013  Score=48.75  Aligned_cols=23  Identities=30%  Similarity=0.621  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .-+++.||+|+|||+|.++|...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            46999999999999999999853

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.33  E-value=0.00069  Score=50.61  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+.|.|++|+||||+++++...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3456799999999999999754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0029  Score=46.39  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++|.|++|+||||+..++...
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999987643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0019  Score=48.78  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=21.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ..+....|+|-|..|||||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34456899999999999999988764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.013  Score=42.63  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l   39 (228)
                      .+.++|.|+|.+||||+++++
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHH
Confidence            357899999999999999987

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.0012  Score=48.22  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++|.||+|+||||++++|+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999999754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0012  Score=49.47  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+-|+|.|++|+|||+|++++++.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            357999999999999999999864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0022  Score=49.22  Aligned_cols=28  Identities=18%  Similarity=0.240  Sum_probs=23.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .++.+.-.++++||+|+|||.|.++|..
T Consensus        47 ~~~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          47 HEHKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             CTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCcchhHHHHHHHHh
Confidence            4455556899999999999999999864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.19  E-value=0.0015  Score=46.84  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ..|+|.|..||||||+.+.|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999885

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0035  Score=44.93  Aligned_cols=22  Identities=14%  Similarity=0.190  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .-+++.|++|+||||+...+..
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3599999999999999997764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0016  Score=46.83  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .|+|.||+||||||+-..|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8899999999999999988643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.12  E-value=0.0016  Score=46.50  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 027090           21 TVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .|+|-|.-||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0017  Score=46.63  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..|+|.|..||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4899999999999999998853

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.002  Score=47.39  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++|.|++|+||||++.+++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.002  Score=46.54  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +|+.|+|=|.-||||||+++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            578999999999999999999863

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0016  Score=47.42  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..++|.|.-|||||||+|.|+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            47899999999999999999764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0018  Score=46.20  Aligned_cols=26  Identities=12%  Similarity=0.190  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++..+.|.|++|+|||+|...++..
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            45679999999999999999887643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.04  E-value=0.0022  Score=50.99  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~~   43 (228)
                      .-.|+|.|++||||||++.+++...
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhh
Confidence            3689999999999999999998653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.99  E-value=0.0012  Score=49.89  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=16.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~   40 (228)
                      -.|+|.|.+||||||+.++|.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            489999999999999999874

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0023  Score=46.80  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ++.|+|=|.-||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999999974

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.95  E-value=0.0018  Score=52.06  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+|+++||+|||||-|.+.|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999975

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.95  E-value=0.002  Score=50.42  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ++...+++.||+|+|||+|.++|++.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999998754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.0024  Score=46.24  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++|.||+|+||||+.+.|...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4899999999999999988654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0024  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++|.|++|+||||++.+|+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4889999999999999999754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.70  E-value=0.0034  Score=49.14  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+..+++++||+|||||-|.++|..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            3446899999999999999999863

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.0027  Score=46.18  Aligned_cols=25  Identities=20%  Similarity=0.217  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +++..+.|.|++|+|||||...++-
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4567999999999999999988764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.48  E-value=0.047  Score=39.32  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027090           20 RTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~   40 (228)
                      ..++|.|+|.+||||+++++.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            368999999999999999863

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.35  E-value=0.0046  Score=45.21  Aligned_cols=24  Identities=17%  Similarity=0.405  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           17 NGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      +.+..++|.|++|+|||||.-.++
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHH
Confidence            456799999999999999987765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.33  E-value=0.0053  Score=44.79  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +.|+|.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999953

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.32  E-value=0.0067  Score=42.17  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.=|++.|++|+||||+.-.|...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            467999999999999999887643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.20  E-value=0.0076  Score=41.91  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.=|+|.|++|+||||+.-.|...
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            467999999999999999888643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.12  E-value=0.0059  Score=44.43  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +++..++|.|++|+|||+|...++-.
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            45678999999999999999777543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.03  E-value=0.0064  Score=43.12  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .++...+++.||+++|||+|.++|+.-
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHH
Confidence            455578999999999999999988654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.009  Score=43.52  Aligned_cols=26  Identities=12%  Similarity=0.135  Sum_probs=22.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      -+++..+.|.|++|+|||+|.-.++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999988763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.94  E-value=0.0084  Score=44.62  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      -.++..++|.|++|+|||||+..|.
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            3456789999999999999987665

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.93  E-value=0.0072  Score=43.80  Aligned_cols=26  Identities=15%  Similarity=0.147  Sum_probs=21.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      -+.+..++|.|++|+|||+|...++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            34567999999999999999977753

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.88  E-value=0.011  Score=45.22  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+..+.-.++++||+|+|||.+.+.|...
T Consensus        48 ~~~kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          48 DPNRPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             CSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCcchHHHHHHHHHHH
Confidence            34444457899999999999999988643

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.79  E-value=0.011  Score=40.84  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+.=|++.|++|+||||+.-.|...
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3467999999999999998776543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.79  E-value=0.0079  Score=43.28  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      -+++..+.|.|++|+|||+|.-.++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            3466799999999999999986543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.76  E-value=0.035  Score=40.03  Aligned_cols=46  Identities=13%  Similarity=0.068  Sum_probs=31.5

Q ss_pred             CccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCcc
Q 027090          103 GIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED  152 (228)
Q Consensus       103 ~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~  152 (228)
                      .+|.+++|+.+. ..++.....++-.+....+-    +.+||+||+|+...
T Consensus        10 NiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i----~pvIvlnK~DL~~~   56 (225)
T d1u0la2          10 NVDQVILVVTVKMPETSTYIIDKFLVLAEKNEL----ETVMVINKMDLYDE   56 (225)
T ss_dssp             SCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTC----EEEEEECCGGGCCH
T ss_pred             cCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCC----CEEEEEeCcccCCH
Confidence            679999999876 46777666543333332222    58889999999865

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.007  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .+++|+|.+|+|||++++.|+-
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            5799999999999999977653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.68  E-value=0.078  Score=39.25  Aligned_cols=26  Identities=15%  Similarity=0.250  Sum_probs=21.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      .-+.+..+.|.|++|+|||||.-.++
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHH
Confidence            34566799999999999999986665

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.59  E-value=0.014  Score=43.62  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ....|+|.|..|.|||||.+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999988643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.45  E-value=0.006  Score=46.91  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..++|.|++|+|||||.++|.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4799999999999999998864

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.40  E-value=0.015  Score=38.24  Aligned_cols=22  Identities=27%  Similarity=0.253  Sum_probs=17.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l   39 (228)
                      .-.+.+|.+++|+|||+++-.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHH
Confidence            3467788999999999987544

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.016  Score=43.42  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=24.3

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      .|-.++-+++|+|+.|+|||+|+..|..
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            4556788999999999999999988875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.19  E-value=0.011  Score=45.11  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 027090           21 TVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        21 ~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ++++.|++|+|||.|.++|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            4555799999999999999865

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.15  E-value=0.022  Score=42.32  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=23.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      ..++...+.+.|+.++|||+|+++|...
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3455668999999999999999998754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.016  Score=42.86  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=19.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHh
Q 027090           19 ERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      +..++|.|++|+|||||.-.|.
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            5688899999999999987664

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.95  E-value=0.013  Score=44.95  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHhC
Q 027090           19 ERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..+|+|=|.-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            36799999999999999999964

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.76  E-value=0.015  Score=44.66  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+|+|=|.-|+||||+++.|...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.68  E-value=0.019  Score=41.08  Aligned_cols=21  Identities=19%  Similarity=0.346  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 027090           22 VVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        22 i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.|.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.66  E-value=0.022  Score=43.73  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 027090           20 RTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      .+|.|=|.-|+||||+++.|...
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEEECCccCCHHHHHHHHHHH
Confidence            68999999999999999999764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.87  E-value=0.034  Score=35.80  Aligned_cols=26  Identities=12%  Similarity=0.093  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           16 SNGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        16 ~~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ++.+..|.+-|.+|+||||+-++|.-
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHH
Confidence            45678999999999999999999953

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.77  E-value=0.42  Score=34.21  Aligned_cols=51  Identities=25%  Similarity=0.277  Sum_probs=33.9

Q ss_pred             CccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCccccccEEEEEeCCCCCccchhhHHH
Q 027090          103 GIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED  159 (228)
Q Consensus       103 ~~~~il~v~~~~-~~~s~~~~~~l~~~~~~~~~~~~~~~llv~~~~D~~~~~~~~~~~  159 (228)
                      .+|.+++|+++. ..++.....++-.+....  ..  +.+||+||+|+...  .+.+.
T Consensus        10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~--~i--~pvIvlnK~DL~~~--~~~~~   61 (231)
T d1t9ha2          10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DI--QPIICITKMDLIED--QDTED   61 (231)
T ss_dssp             CCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TC--EEEEEEECGGGCCC--HHHHH
T ss_pred             ccCEEEEEEECCCCCCCHHHHHHHHHHHHHc--CC--CEEEEEeccccccc--HHHHH
Confidence            679888988875 467777766544333322  22  57889999999865  44443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.041  Score=42.65  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=17.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l   39 (228)
                      ....+|.|++|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            458999999999999988543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.43  E-value=0.031  Score=41.80  Aligned_cols=16  Identities=25%  Similarity=0.449  Sum_probs=14.1

Q ss_pred             EEEEEcCCCCCHHHHH
Q 027090           21 TVVLLGRTGNGKSATG   36 (228)
Q Consensus        21 ~i~l~G~~g~GKSTli   36 (228)
                      .++|+|++|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            5789999999999865

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.09  E-value=0.032  Score=42.07  Aligned_cols=16  Identities=19%  Similarity=0.484  Sum_probs=14.1

Q ss_pred             EEEEEcCCCCCHHHHH
Q 027090           21 TVVLLGRTGNGKSATG   36 (228)
Q Consensus        21 ~i~l~G~~g~GKSTli   36 (228)
                      .++|.|+.||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            5889999999999865

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.96  E-value=0.05  Score=40.00  Aligned_cols=20  Identities=40%  Similarity=0.690  Sum_probs=17.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l   39 (228)
                      ++|+|.|+-|+||||+.-.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHH
Confidence            68999999999999987554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=0.049  Score=41.07  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=16.6

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATG   36 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTli   36 (228)
                      ++..-+++|.+|+|||||-
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4567899999999999976

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.059  Score=39.79  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      +.+..+.|.|++|+|||||.-.++.
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHH
Confidence            4567999999999999999866653

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.34  E-value=0.054  Score=40.98  Aligned_cols=19  Identities=26%  Similarity=0.520  Sum_probs=16.4

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATG   36 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTli   36 (228)
                      .+..-+++|.+|+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            3467899999999999976

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.26  E-value=0.06  Score=40.74  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=16.7

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATG   36 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTli   36 (228)
                      .+..-+++|-+|+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4467889999999999998

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.12  E-value=0.076  Score=39.40  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      |-.++-+++|+|..|+|||+|+..+.
T Consensus        64 pigkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          64 PYAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             cccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            44567799999999999999987775

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.28  E-value=0.051  Score=35.16  Aligned_cols=19  Identities=32%  Similarity=0.272  Sum_probs=15.9

Q ss_pred             CCCeEEEEEcCCCCCHHHH
Q 027090           17 NGERTVVLLGRTGNGKSAT   35 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTl   35 (228)
                      .++.+++|.+++|+|||..
T Consensus         5 ~~~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             STTCEEEECCCTTSSTTTT
T ss_pred             HcCCcEEEEcCCCCChhHH
Confidence            4567899999999999943

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.51  E-value=0.11  Score=36.36  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=18.3

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHhC
Q 027090           20 RTVVLLGRT-GNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~-g~GKSTlin~l~g   41 (228)
                      +++-|.|.. |+||||+.-.|..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            689999996 9999998876643

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=0.13  Score=38.01  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=17.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l   39 (228)
                      .+.|.+.|+-|+||||+--+|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHH
Confidence            467889999999999976555

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.74  E-value=0.13  Score=38.03  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027090           17 NGERTVVLLGRTGNGKSATGNSILGR   42 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKSTlin~l~g~   42 (228)
                      +.+..+.+.|++++|||||.-.++..
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHH
Confidence            45679999999999999999777643

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.67  E-value=0.17  Score=37.07  Aligned_cols=21  Identities=29%  Similarity=0.616  Sum_probs=16.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTlin~l   39 (228)
                      .+.|++-|+-|+||||+--.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            356777799999999986555

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.66  E-value=0.16  Score=37.63  Aligned_cols=20  Identities=35%  Similarity=0.634  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l   39 (228)
                      ++|+|-|+-|+||||+.-.|
T Consensus         3 r~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            68899999999999977554

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.24  E-value=0.14  Score=37.19  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 027090           20 RTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ..|+|.|++|+||+++-++|..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4589999999999999999853

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.20  E-value=0.16  Score=37.73  Aligned_cols=27  Identities=15%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHh
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSIL   40 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l~   40 (228)
                      .|-..+-+++|+|..|+|||+|+..+.
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            344567799999999999999986654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=86.88  E-value=0.14  Score=38.01  Aligned_cols=18  Identities=22%  Similarity=0.357  Sum_probs=15.7

Q ss_pred             CCCeEEEEEcCCCCCHHH
Q 027090           17 NGERTVVLLGRTGNGKSA   34 (228)
Q Consensus        17 ~~~~~i~l~G~~g~GKST   34 (228)
                      .+++.++|.+++|+|||+
T Consensus         7 ~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             hcCCcEEEEECCCCCHHH
Confidence            466789999999999996

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.40  E-value=0.18  Score=37.39  Aligned_cols=26  Identities=19%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHH
Q 027090           14 SPSNGERTVVLLGRTGNGKSATGNSI   39 (228)
Q Consensus        14 ~~~~~~~~i~l~G~~g~GKSTlin~l   39 (228)
                      .|-.++-+++|+|..|+|||+|+..+
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred             ccccCCceEeeccCCCCChHHHHHHH
Confidence            34556779999999999999998654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.11  E-value=0.22  Score=34.41  Aligned_cols=18  Identities=22%  Similarity=0.285  Sum_probs=14.0

Q ss_pred             eEEEEEcCCCCCHHHHHH
Q 027090           20 RTVVLLGRTGNGKSATGN   37 (228)
Q Consensus        20 ~~i~l~G~~g~GKSTlin   37 (228)
                      .++++.+++|+|||...-
T Consensus        24 ~n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             SCEEEECCTTSCHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHH
Confidence            357788999999996433

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.64  E-value=0.29  Score=34.20  Aligned_cols=24  Identities=4%  Similarity=-0.022  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Q 027090           18 GERTVVLLGRTGNGKSATGNSILG   41 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTlin~l~g   41 (228)
                      ....+++-|++|+||||+...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998874

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.58  E-value=0.31  Score=34.44  Aligned_cols=20  Identities=25%  Similarity=0.672  Sum_probs=17.1

Q ss_pred             eEEEEE-cCCCCCHHHHHHHH
Q 027090           20 RTVVLL-GRTGNGKSATGNSI   39 (228)
Q Consensus        20 ~~i~l~-G~~g~GKSTlin~l   39 (228)
                      ++|+|. +..|+||||+--.|
T Consensus         3 ~vIav~~~kGGvGKTtia~nL   23 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANL   23 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHH
Confidence            578888 88999999988665

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.34  E-value=0.31  Score=34.42  Aligned_cols=20  Identities=30%  Similarity=0.664  Sum_probs=16.9

Q ss_pred             eEEEEE-cCCCCCHHHHHHHH
Q 027090           20 RTVVLL-GRTGNGKSATGNSI   39 (228)
Q Consensus        20 ~~i~l~-G~~g~GKSTlin~l   39 (228)
                      +.|+|. |+-|+||||+--.|
T Consensus         2 kvIav~s~KGGvGKTtia~nl   22 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANL   22 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHH
Confidence            578888 89999999988665

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.34  E-value=0.35  Score=31.67  Aligned_cols=20  Identities=20%  Similarity=0.134  Sum_probs=16.1

Q ss_pred             eEEEEEcCCCCCHHH-HHHHH
Q 027090           20 RTVVLLGRTGNGKSA-TGNSI   39 (228)
Q Consensus        20 ~~i~l~G~~g~GKST-lin~l   39 (228)
                      ..-+++||-.||||| |++.+
T Consensus         3 ~L~~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           3 WIEFITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEEccccCHHHHHHHHHH
Confidence            356789999999999 66665

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.84  E-value=0.16  Score=36.49  Aligned_cols=19  Identities=26%  Similarity=0.406  Sum_probs=15.6

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q 027090           18 GERTVVLLGRTGNGKSATG   36 (228)
Q Consensus        18 ~~~~i~l~G~~g~GKSTli   36 (228)
                      .++.+++++|+|+|||...
T Consensus        57 ~g~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHH
T ss_pred             CCCCEEEEecCCChHHHHH
Confidence            3467899999999999754

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.77  E-value=0.11  Score=36.38  Aligned_cols=18  Identities=22%  Similarity=0.305  Sum_probs=15.1

Q ss_pred             CeEEEEEcCCCCCHHHHH
Q 027090           19 ERTVVLLGRTGNGKSATG   36 (228)
Q Consensus        19 ~~~i~l~G~~g~GKSTli   36 (228)
                      +..+++.+++|+|||+..
T Consensus        40 ~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CSCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHH
Confidence            457899999999998753

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.71  E-value=0.73  Score=30.15  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=18.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHH
Q 027090           15 PSNGERTVVLLGRTGNGKSATGNS   38 (228)
Q Consensus        15 ~~~~~~~i~l~G~~g~GKSTlin~   38 (228)
                      |...+..-+++||-.|||||-+-.
T Consensus         3 ~~~~G~l~lI~GpMfSGKTteLi~   26 (141)
T d1xx6a1           3 PKDHGWVEVIVGPMYSGKSEELIR   26 (141)
T ss_dssp             CTTCCEEEEEECSTTSSHHHHHHH
T ss_pred             CCcceeEEEEEeccccHHHHHHHH
Confidence            355667889999999999995533

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=80.61  E-value=0.33  Score=32.30  Aligned_cols=20  Identities=50%  Similarity=0.745  Sum_probs=15.1

Q ss_pred             CeEEEEEcCCCC-CHHHHHHHH
Q 027090           19 ERTVVLLGRTGN-GKSATGNSI   39 (228)
Q Consensus        19 ~~~i~l~G~~g~-GKSTlin~l   39 (228)
                      +++|+|+|.||| |++|| +.+
T Consensus         2 pK~I~IlGsTGSIG~~tL-~Vi   22 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTL-DLI   22 (150)
T ss_dssp             CEEEEEETTTSHHHHHHH-HHH
T ss_pred             CcEEEEECCCcHHHHHHH-HHH
Confidence            379999999998 66554 444