Citrus Sinensis ID: 027096

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEccHHHHHHHHccccccccccccEEEEEccccEEEEcccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHccccEcccccHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHccccEEEEEccccccccEEEEccccccccccccccEEccccEEEEEcccccccccccccEEEEEEcccccccccccccccccEEcccEEEEccccEEEEEccHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mvtmdqetageLDYVFLCVLPLFHVFGLAvitcgqlqkgsciILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKhglvkkfdlsslklvgsgaaplGKELMEECaknvpsatviqgygltetsgiatmensfagsrnigsagalaPGVEALIVSvdtqkplppnqlgeiwlrgpnmmratkltidkkgwvhtgdlgyfdgdgqLYVVDRIKELIKykgfqvtsnw
Flexible Loop (DISEMBL)
mvtmdqetAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSvdtqkplppnqlgeiwlrgpNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELikykgfqvtsnw
Low Complexity Region (SEG)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Disordered region (IsUnstruct)
**********ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV****
Disordered Region (DISOPRED)
*********GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN*
Disordered Region (DISEMBL)
********AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Disordered Region (DISPRO)
****DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	0.982	0.411	0.683	1e-90
Q0DV32	552	4-coumarate--CoA ligase-l	yes	no	0.978	0.403	0.586	1e-75
Q10S72	552	4-coumarate--CoA ligase-l	no	no	0.907	0.375	0.449	5e-50
Q9S725	556	4-coumarate--CoA ligase 2	no	no	0.929	0.381	0.454	6e-50
Q84P23	562	4-coumarate--CoA ligase-l	no	no	0.916	0.371	0.461	6e-50
Q9S777	561	4-coumarate--CoA ligase 3	no	no	0.921	0.374	0.45	1e-49
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.916	0.382	0.440	2e-49
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.916	0.382	0.470	2e-49
P0C5B6	550	4-coumarate--CoA ligase-l	no	no	0.929	0.385	0.443	8e-49
Q42982	569	Probable 4-coumarate--CoA	no	no	0.921	0.369	0.468	5e-48

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  332 bits (852), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 158/231 (68%), Positives = 187/231 (80%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNMM
Sbjct: 341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMM 400

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           +       ATK TIDKK WVHTGDLGYF+ DG LYVVDRIKELIKYKGFQV
Sbjct: 401 KGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  282 bits (722), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/232 (58%), Positives = 175/232 (75%), Gaps = 9/232 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVT DQ+   E   VFLC LP+FH+FGL+VIT  QL +G+ II M++FD+   + A+++H
Sbjct: 228 MVTSDQDERREGPNVFLCFLPMFHIFGLSVITYAQLHRGNAIIAMSRFDINSLMEAVQRH 287

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH++ VPP+I+ALAKHG   K+DLSSLK +GSGAAPLGK++ME  AK  P + ++QGY
Sbjct: 288 RVTHLFCVPPVIIALAKHGKAGKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQGY 347

Query: 121 GLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 179
           G+TET GI ++E    G +R  GS G L  GVEA IV + T K LPPNQ+GEI +RGPN+
Sbjct: 348 GMTETCGIISLEYPEKGQAREFGSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGPNV 407

Query: 180 M-------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           M       +AT+ TI K+GW+HTGDLGYFDG GQL+VVDR+KELIKYKGFQ+
Sbjct: 408 MQGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQI 458

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1

 Score =  197 bits (501), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 141/216 (65%), Gaps = 9/216 (4%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
           FLC +P+FHV+GL     G L  G+ +++++K++L   LR+I  + VT++ +VPP+++A+
Sbjct: 246 FLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGVTYLPLVPPILVAM 305

Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF 135
             H   K   L  ++ V SG APLGKEL+E   +  P   ++QGYGLTE++ I    +S 
Sbjct: 306 VAHP--KPLPLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTESTAIGASTDSA 363

Query: 136 AGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTID 188
             SR  G+AG L+P  EA IV  D+ + LP N+ GE+W+RGP +M+       AT+ T+ 
Sbjct: 364 EESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKGYFKNAEATQSTLT 423

Query: 189 KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             GW+ TGDL Y D DG L+VVDR+KELIKYKG+QV
Sbjct: 424 PDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQV 459

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 101/222 (45%), Positives = 142/222 (63%), Gaps = 10/222 (4%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   VVPP++
Sbjct: 240 DDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIV 299

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + QGYG+TE   +  M 
Sbjct: 300 LAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMS 359

Query: 133 NSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------A 182
             FA        G+ G +    E  I+  DT   LP N+ GEI +RG  +M+       A
Sbjct: 360 LGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLA 419

Query: 183 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           T  TIDK GW+HTGD+G+ D D +L++VDR+KELIKYKGFQV
Sbjct: 420 TASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQV 461

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 144/221 (65%), Gaps = 12/221 (5%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V L  LPLFHVFG  ++    +  G  ++L+ +F+LE   +A+EK++VT + V PPLI
Sbjct: 248 DRVGLFSLPLFHVFGFMMMIRA-ISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           +AL K  L KK+DL SL+ +G G APLGK++ E   +  P   ++QGYGLTE+SG A   
Sbjct: 307 VALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAA-- 364

Query: 133 NSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RAT 183
           ++F     +  GS G ++  +EA IV   T + LPP + GE+WLRGP +M       +A+
Sbjct: 365 STFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKAS 424

Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             T+DK+GW+ TGDL YFD +  LY+VDR+KELIKYK +QV
Sbjct: 425 AETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQV 465

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/220 (45%), Positives = 143/220 (65%), Gaps = 10/220 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLPLFH++ L  +    L+ G+ ++LM KF++   L  I++HRVT   +VPPL++A
Sbjct: 252 VILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIA 311

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           LAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + QGYG+TE   + +M   
Sbjct: 312 LAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLG 371

Query: 135 FAGS---RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
           FA        GS G +    E  +V ++T+  L  NQ GEI +RG  +M+       AT 
Sbjct: 372 FAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATS 431

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            TID++GW+HTGD+GY D D ++++VDR+KE+IK+KGFQV
Sbjct: 432 ATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQV 471

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/218 (44%), Positives = 143/218 (65%), Gaps = 9/218 (4%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
           F+C +P+FH++GLA    G L  GS II+++KF++   + AI K++ T + +VPP+++A+
Sbjct: 234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query: 76  AKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                 +  K+DLSS+  V  G APL KE+ E  A+  P+  ++QGYGLTE++GI    +
Sbjct: 294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTD 353

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLT 186
           +   SR  G+AG L+  +E  IV   T + L P Q GE+WL+GP++M+       AT  T
Sbjct: 354 TVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSST 413

Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           +D +GW+ TGDL Y D DG ++VVDR+KELIKYKG+QV
Sbjct: 414 LDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQV 451

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 145/221 (65%), Gaps = 12/221 (5%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +CVLPLFH++ L +++ CG L+ G+ I++M KFD+  FL  I+K++V+    VPP++L
Sbjct: 233 VLMCVLPLFHIYSLNSILLCG-LRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVL 291

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           A+AK  +V  +DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M  
Sbjct: 292 AIAKSPIVDSYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCL 351

Query: 134 SFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------AT 183
           +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+       AT
Sbjct: 352 AFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEAT 411

Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             TIDK+GW+HTGD+G+ D D +L++VDR+KELIKYKGFQV
Sbjct: 412 TRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQV 452

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1

 Score =  193 bits (491), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 98/221 (44%), Positives = 141/221 (63%), Gaps = 9/221 (4%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D +F+C +P+FH +GL     G +  GS ++++ +F L   + A+EKHR T + + PP++
Sbjct: 237 DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVL 296

Query: 73  LALAKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
           +A+     L+K K+DLSSLK V  G APL KE+ E   +  P+  ++QGY LTE++G   
Sbjct: 297 VAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGA 356

Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------AT 183
             NS   SR  G+AG L   VEA IV  +T + +  NQ GE+WL+GP++ +       AT
Sbjct: 357 FTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEAT 416

Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             TI+ +GW+ TGDL Y D DG L+VVDR+KELIKYKG+QV
Sbjct: 417 NETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQV 457

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q42982|4CL2_ORYSJ Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2

 Score =  191 bits (484), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/220 (46%), Positives = 140/220 (63%), Gaps = 10/220 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLPLFH+F L  +    ++ G+ + LM +F++   L AIE+ RVT   VVPPL+LA
Sbjct: 258 VALCVLPLFHIFSLNSVLLCAVRAGAAVALMPRFEMGAMLGAIERWRVTVAAVVPPLVLA 317

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           LAK+  V++ DLSS+++V SGAAPLGKEL +     +P A   QGYG+TE   + +M  +
Sbjct: 318 LAKNPFVERHDLSSIRIVLSGAAPLGKELEDALRARLPQAIFGQGYGMTEAGPVLSMCPA 377

Query: 135 FAGS---RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
           FA        GS G +    E  +V  DT   L  N  GEI +RGP +M+       AT 
Sbjct: 378 FAKEPTPAKSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIRGPQIMKGYLNDPEATA 437

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            TID +GW+HTGD+GY D D ++++VDR+KELIK+KGFQV
Sbjct: 438 ATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQV 477

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
255565415	542	AMP dependent CoA ligase, putative [Rici	0.982	0.413	0.714	4e-94
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	0.982	0.412	0.709	3e-93
224127622	543	4-coumarate-coa ligase [Populus trichoca	0.982	0.412	0.701	6e-92
224077516	543	4-coumarate-coa ligase [Populus trichoca	0.982	0.412	0.692	1e-90
373432591	540	4-coumarate--CoA ligase-like 7-like [Gly	0.982	0.414	0.688	3e-89
297809709	544	hypothetical protein ARALYDRAFT_490166 [	0.982	0.411	0.679	5e-89
15234634	544	4-coumarate--CoA ligase-like 7 [Arabidop	0.982	0.411	0.683	6e-89
312281669	543	unnamed protein product [Thellungiella h	0.982	0.412	0.670	8e-88
356539342	548	PREDICTED: 4-coumarate--CoA ligase-like	0.982	0.408	0.662	2e-87
449459112	543	PREDICTED: 4-coumarate--CoA ligase-like	0.982	0.412	0.696	3e-87

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 165/231 (71%), Positives = 191/231 (82%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQE AGEL  VFLC LP+FHVFGLAVI   QLQ G+ ++ M KFD E+ L+A+EK+
Sbjct: 219 MITMDQEIAGELHNVFLCFLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKY 278

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           R+TH+WVVPP+ILALAK  LVKK+DLSSL+ VGSGAAPL KELMEECAK +P A + QGY
Sbjct: 279 RITHLWVVPPVILALAKQSLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQGY 338

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET+GI ++EN   G R+ GSAG LA G+EA I+SVDT KPLPPNQLGEIW+RGPNMM
Sbjct: 339 GMTETTGIVSVENPRIGVRHSGSAGTLAAGIEAQIISVDTLKPLPPNQLGEIWVRGPNMM 398

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           R       ATK TIDKKGW+HTGDLGYFD DG+LYVVDRIKELIKYKGFQV
Sbjct: 399 RGYFNNPQATKQTIDKKGWLHTGDLGYFDEDGKLYVVDRIKELIKYKGFQV 449

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 164/231 (70%), Positives = 193/231 (83%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTM+Q+  GE+D VFLC LP+FHVFGLA+IT  QLQ+G+ +I MA+FDLE  L+ +EK+
Sbjct: 220 MVTMEQDLVGEMDNVFLCFLPMFHVFGLAIITYAQLQRGNTVISMARFDLEKMLKDVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VTH+WVVPP+ILAL+K+ +VKKF+LSS+K +GSGAAPLGK+LMEEC+K VP   V QGY
Sbjct: 280 KVTHLWVVPPVILALSKNSMVKKFNLSSIKYIGSGAAPLGKDLMEECSKVVPYGIVAQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI +ME+   G RN GSAG LA GVEA IVSVDT KPLPPNQLGEIW++GPNMM
Sbjct: 340 GMTETCGIVSMEDIRGGKRNSGSAGMLASGVEAQIVSVDTLKPLPPNQLGEIWVKGPNMM 399

Query: 181 -------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                  +ATKLTIDKKGWVHTGDLGYFD DG LYVVDRIKELIKYKGFQV
Sbjct: 400 QGYFNNPQATKLTIDKKGWVHTGDLGYFDEDGHLYVVDRIKELIKYKGFQV 450

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  342 bits (877), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 162/231 (70%), Positives = 191/231 (82%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MV+MDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM LR IEK+
Sbjct: 220 MVSMDQVMAGEIHNVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ILAL+K  LVKK+DLSSL+ +GSGAAPLGK+LM+ECAKN+P  T+IQG+
Sbjct: 280 RVTHMWVVPPVILALSKQNLVKKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDTTIIQGF 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G R+ GSAG L  G+EA I+SV+T KPLPPNQLGEIW+RGPNMM
Sbjct: 340 GMTETCGIVSLEDPRIGVRHSGSAGILNAGIEAQIISVETAKPLPPNQLGEIWVRGPNMM 399

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           R       ATK TIDKKGWVHTGDLGYFD DGQL+VVDRIKELIKYKGFQV
Sbjct: 400 RGYFNNPQATKDTIDKKGWVHTGDLGYFDDDGQLFVVDRIKELIKYKGFQV 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 160/231 (69%), Positives = 190/231 (82%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM L+ IEKH
Sbjct: 220 MVTMDQAMAGEMHDVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKH 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVT +WVVPP++LALAK  +VKK+D+SSL+ +GSGAAPLGK+LM+ECAKN+P   + QGY
Sbjct: 280 RVTDMWVVPPVVLALAKQDMVKKYDISSLRNIGSGAAPLGKDLMKECAKNLPDTIISQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+S  G R+ GSAG LA G+EA IVSV+T KPLPPNQLGEIW+RGPNMM
Sbjct: 340 GMTETCGIVSVEDSRLGVRHSGSAGILAAGIEAQIVSVETLKPLPPNQLGEIWVRGPNMM 399

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           R       ATK T+DKKGWVHTGD+GYFD DGQL+VVDRIKELIKYKGFQV
Sbjct: 400 RGYFNNPQATKDTMDKKGWVHTGDVGYFDDDGQLFVVDRIKELIKYKGFQV 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373432591|ref|NP_001243292.1| 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|370316591|gb|AEX25890.1| 4-coumarate:CoA ligase [Glycine max]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/231 (68%), Positives = 187/231 (80%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+  D + AG L  VFLCVLP+FHVFGL VI+ GQLQ+GS ++ + KF+ E+ L+ IEK 
Sbjct: 217 MIGFDDDLAGVLHSVFLCVLPMFHVFGLMVISYGQLQRGSAVVSLKKFEFELVLKTIEKF 276

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VTH+WVVPP+ILALAKHGLV K+DLSSLK +GSGAAPLGKELM+ECAK  P A V QGY
Sbjct: 277 KVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMKECAKRFPHAIVSQGY 336

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++EN+  G RN GS G L  G+EA +VSVDT KPLPP QLGEIW+RGPNMM
Sbjct: 337 GMTETCGIVSVENARMGIRNSGSTGMLVAGMEAQVVSVDTLKPLPPGQLGEIWVRGPNMM 396

Query: 181 -------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                  +AT+LT+DKKGWVHTGDLGYFD DGQL+VVDRIKELIKYKGFQV
Sbjct: 397 QGYHNNPQATRLTMDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQV 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809709|ref|XP_002872738.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi|297318575|gb|EFH48997.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 187/231 (80%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ ++ MAKF+LE+ L+ IEK+
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLTVITYSQLQRGNALVSMAKFELELVLKNIEKY 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T    PPNQ GEIW+RGPNMM
Sbjct: 341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGNSQPPNQQGEIWVRGPNMM 400

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           +       ATK TIDKKGWVHTGDLGYF+ DG LYVVDR+KELIKYKGFQV
Sbjct: 401 KGYLNNPQATKETIDKKGWVHTGDLGYFNEDGNLYVVDRLKELIKYKGFQV 451

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 158/231 (68%), Positives = 187/231 (80%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNMM
Sbjct: 341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMM 400

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           +       ATK TIDKK WVHTGDLGYF+ DG LYVVDRIKELIKYKGFQV
Sbjct: 401 KGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281669|dbj|BAJ33700.1| unnamed protein product [Thellungiella halophila]

 Score =  328 bits (842), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 155/231 (67%), Positives = 186/231 (80%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ +I MAKF+LE  L+ IEK+
Sbjct: 220 MVTMDQDLMGEYHAVFLCFLPMFHVFGLTVITYSQLQRGNAVISMAKFELETLLKNIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVT +WVVPP+ LAL+K  +VKK+DLSSLK +GSGAAPLGK+LMEEC +N+ +  ++QGY
Sbjct: 280 RVTQLWVVPPVFLALSKQSIVKKYDLSSLKYIGSGAAPLGKDLMEECGRNISNVVLMQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV++ K  PPNQLGEIW+RGPNMM
Sbjct: 340 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVESGKSQPPNQLGEIWVRGPNMM 399

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           +       ATK TID+KGWVHTGDLGYF+ DG L+VVDRIKELIKYKGFQV
Sbjct: 400 KGYLNNPQATKETIDRKGWVHTGDLGYFNEDGNLFVVDRIKELIKYKGFQV 450

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539342|ref|XP_003538157.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Glycine max]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 153/231 (66%), Positives = 183/231 (79%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+ MD + AGE D V+LCVLP+FHVFGLAV+T   L++GS +++M +F+LE  L+AIEK 
Sbjct: 225 MIGMDDDLAGEQDDVYLCVLPMFHVFGLAVVTYAALRRGSAVVVMERFELEALLKAIEKQ 284

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVT +WVVPP++L LAK  +V  +DLSSL+ +GSGAAPLGK+LMEEC +  P   + QGY
Sbjct: 285 RVTKLWVVPPILLGLAKQSVVGNYDLSSLRRIGSGAAPLGKDLMEECGRRFPHVAICQGY 344

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++EN   G R+ GS G L  GVEA IVSVDTQKPLPP QLGEIW+RGPNMM
Sbjct: 345 GMTETCGIVSVENPRVGVRHTGSTGTLVSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMM 404

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           +       AT+LTIDKKGWVHTGDLGYFD DGQLYVVDRIKELIKYKGFQV
Sbjct: 405 QGYHNNPEATRLTIDKKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQV 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459112|ref|XP_004147290.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi|449528351|ref|XP_004171168.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 161/231 (69%), Positives = 183/231 (79%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQ   GE   VFL  LP+FHVFGLA IT  QLQKG+ ++ M KF+LE  L A+EK+
Sbjct: 220 MITMDQTFNGEEHGVFLNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VT +WVVPP++LALAK  LVKK++LSS+K VGSGAAPLG+ELMEECA N+PSA VIQGY
Sbjct: 280 KVTDLWVVPPVVLALAKQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET G+  +EN   G RN GSAG LA GVEA IVSVDT KPLPPNQ GEI +RGPNMM
Sbjct: 340 GMTETCGVVALENPAVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMM 399

Query: 181 -------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                   ATK TIDK GWVHTGDLGYFD +GQLYVVDRIKELIKYKGFQV
Sbjct: 400 LGYFNNPEATKQTIDKHGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQV 450

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.982	0.411	0.683	5.8e-82
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.921	0.374	0.45	5.4e-47
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.916	0.371	0.461	6.9e-47
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.916	0.382	0.444	1.8e-46
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.929	0.381	0.454	3e-46
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.929	0.385	0.443	3.8e-46
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.925	0.376	0.457	7.9e-46
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.912	0.368	0.423	2.4e-44
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.912	0.367	0.427	1.7e-43
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.916	0.38	0.423	4.5e-43

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 158/231 (68%), Positives = 187/231 (80%)

Query:     1 MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
             MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct:   221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query:    61 RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
             RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct:   281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query:   121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
             G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNMM
Sbjct:   341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMM 400

Query:   181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             +       ATK TIDKK WVHTGDLGYF+ DG LYVVDRIKELIKYKGFQV
Sbjct:   401 KGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 99/220 (45%), Positives = 143/220 (65%)

Query:    15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             V LCVLPLFH++ L  +    L+ G+ ++LM KF++   L  I++HRVT   +VPPL++A
Sbjct:   252 VILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIA 311

Query:    75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
             LAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + QGYG+TE   + +M   
Sbjct:   312 LAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLG 371

Query:   135 FAGS---RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
             FA        GS G +    E  +V ++T+  L  NQ GEI +RG  +M+       AT 
Sbjct:   372 FAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATS 431

Query:   185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
              TID++GW+HTGD+GY D D ++++VDR+KE+IK+KGFQV
Sbjct:   432 ATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQV 471

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 102/221 (46%), Positives = 144/221 (65%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V L  LPLFHVFG  ++    +  G  ++L+ +F+LE   +A+EK++VT + V PPLI
Sbjct:   248 DRVGLFSLPLFHVFGFMMMIRA-ISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             +AL K  L KK+DL SL+ +G G APLGK++ E   +  P   ++QGYGLTE+SG A   
Sbjct:   307 VALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAA-- 364

Query:   133 NSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------AT 183
             ++F     +  GS G ++  +EA IV   T + LPP + GE+WLRGP +M+       A+
Sbjct:   365 STFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKAS 424

Query:   184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
               T+DK+GW+ TGDL YFD +  LY+VDR+KELIKYK +QV
Sbjct:   425 AETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQV 465

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 97/218 (44%), Positives = 144/218 (66%)

Query:    16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
             F+C +P+FH++GLA    G L  GS II+++KF++   + AI K++ T + +VPP+++A+
Sbjct:   234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query:    76 AKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   +K K+DLSS+  V  G APL KE+ E  A+  P+  ++QGYGLTE++GI    +
Sbjct:   294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTD 353

Query:   134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLT 186
             +   SR  G+AG L+  +E  IV   T + L P Q GE+WL+GP++M+       AT  T
Sbjct:   354 TVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSST 413

Query:   187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             +D +GW+ TGDL Y D DG ++VVDR+KELIKYKG+QV
Sbjct:   414 LDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQV 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 101/222 (45%), Positives = 142/222 (63%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   VVPP++
Sbjct:   240 DDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIV 299

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + QGYG+TE   +  M 
Sbjct:   300 LAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMS 359

Query:   133 NSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------A 182
               FA        G+ G +    E  I+  DT   LP N+ GEI +RG  +M+       A
Sbjct:   360 LGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLA 419

Query:   183 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             T  TIDK GW+HTGD+G+ D D +L++VDR+KELIKYKGFQV
Sbjct:   420 TASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQV 461

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 98/221 (44%), Positives = 141/221 (63%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D +F+C +P+FH +GL     G +  GS ++++ +F L   + A+EKHR T + + PP++
Sbjct:   237 DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVL 296

Query:    73 LALAKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
             +A+     L+K K+DLSSLK V  G APL KE+ E   +  P+  ++QGY LTE++G   
Sbjct:   297 VAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGA 356

Query:   131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------AT 183
               NS   SR  G+AG L   VEA IV  +T + +  NQ GE+WL+GP++ +       AT
Sbjct:   357 FTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEAT 416

Query:   184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
               TI+ +GW+ TGDL Y D DG L+VVDR+KELIKYKG+QV
Sbjct:   417 NETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQV 457

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 102/223 (45%), Positives = 143/223 (64%)

Query:    13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
             D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct:   247 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 305

Query:    72 ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
             +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M
Sbjct:   306 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 365

Query:   132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR------- 181
                FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+       
Sbjct:   366 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPA 425

Query:   182 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             AT  TIDK GW+HTGD+G  D D +L++VDR+KELIKYKGFQV
Sbjct:   426 ATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 468

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 92/217 (42%), Positives = 138/217 (63%)

Query:    17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
             +C +P+ H+FG      G +  G  I+++ KFD+   L A+E HR +++ +VPP+++A+ 
Sbjct:   256 ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMV 315

Query:    77 K--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
                + +  K+DLSSL  V +G APL +E+ E+  +N P   ++QGYGLTE++ IA    +
Sbjct:   316 NGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTESTAIAASMFN 375

Query:   135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
                ++  G++G LAP VE  IV  DT + L  NQ GE+W+R P +M+       AT  TI
Sbjct:   376 KEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYFKNKEATASTI 435

Query:   188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             D +GW+ TGDL Y DGDG ++VVDR+KELIK  G+QV
Sbjct:   436 DSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQV 472

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 94/220 (42%), Positives = 141/220 (64%)

Query:    15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             V+L  LPL H++GL++   G L  GS I++M +FD    +  IE+ ++TH  VVPP+++A
Sbjct:   252 VYLAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMA 311

Query:    75 LAKH--GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L K   G+  +    SLK V SGAAPL ++ +E+  + +P   +IQGYG+TE++ + T  
Sbjct:   312 LTKKAKGVCGEV-FKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRG 370

Query:   133 -NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
              NS   SR   S G LAP ++A +V   +   LPP   GE+W++GP +M+       AT+
Sbjct:   371 FNSEKLSR-YSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQ 429

Query:   185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             ++I +  W+ TGD+ YFD DG L++VDRIKE+IKYKGFQ+
Sbjct:   430 MSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQI 469

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 91/215 (42%), Positives = 134/215 (62%)

Query:    16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
             F+C +PLFH FGL       L  G+ ++++ +FDL   + A+EK+R T + +VPP+++ +
Sbjct:   243 FICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTM 302

Query:    76 AKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++KK+D+S L+ V  G APL KE+ +   K  P+  V QGY LTE++G      
Sbjct:   303 INKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNGAGASIE 362

Query:   134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM----MRATKLTIDK 189
             S   SR  G+ G L+ GVEA IV  +T + +  NQ GE+WL+GP++     R  +  I  
Sbjct:   363 SVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFRNEEEIITS 422

Query:   190 KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             +GW+ TGDL Y D DG L++VDR+KELIKYKG+QV
Sbjct:   423 EGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQV 457

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-119
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-88
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	2e-74
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-68
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	6e-67
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-65
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-64
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-61
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-60
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-59
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	6e-53
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	4e-52
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-51
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-51
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	4e-48
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	6e-45
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-40
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-38
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-38
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	8e-38
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-37
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	6e-37
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	7e-36
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	9e-35
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	6e-34
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	9e-34
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-33
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	8e-33
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-32
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-32
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-32
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	8e-31
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-30
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-30
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-30
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-29
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-29
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	6e-29
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-28
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-28
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-27
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-27
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-27
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-27
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-27
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	5e-27
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-26
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-26
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-26
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	2e-25
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-24
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-24
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-24
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-24
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	9e-23
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-22
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-22
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-22
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-22
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-21
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-21
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-21
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-20
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-20
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-20
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	7e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-19
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	7e-19
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-18
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	4e-18
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	6e-18
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-17
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	2e-17
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-17
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	2e-17
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	3e-17
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	5e-17
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-17
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	6e-17
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	7e-17
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	8e-17
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	1e-16
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-16
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	1e-16
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	2e-16
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	5e-16
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	7e-16
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	7e-16
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-15
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	3e-15
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	5e-15
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	7e-15
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	8e-15
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	2e-14
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-14
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	3e-13
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-13
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-13
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	6e-13
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	8e-13
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	8e-12
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-12
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-11
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-11
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-11
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	1e-10
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	1e-10
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-10
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-10
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	2e-10
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-10
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-10
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	4e-10
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	4e-10
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	6e-10
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	9e-10
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-09
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-09
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-09
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	3e-09
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	4e-09
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	9e-09
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	2e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	3e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-08
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	7e-08
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-07
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-07
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	3e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	4e-07
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	6e-07
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	7e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-06
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	2e-06
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-06
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	2e-06
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	2e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-06
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	7e-06
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	8e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	1e-05
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-05
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	2e-05
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-05
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	3e-05
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	4e-05
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	4e-05
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	1e-04
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-04
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	2e-04
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	2e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-04
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	7e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.001
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	0.001
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	0.001
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	0.002
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	0.003

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  347 bits (893), Expect = e-119
 Identities = 124/231 (53%), Positives = 159/231 (68%), Gaps = 7/231 (3%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            +   +    + + V LCVLP+FH++GL VI    L+ G+ +++M +FDLE FL AIEK+
Sbjct: 189 QLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKY 248

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VTH+ VVPP++LAL KH +V K+DLSSLK +GSGAAPLGKEL E      P   + QGY
Sbjct: 249 KVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGY 308

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TE+S + TM          GS G L P VEA IV  +T + LPPNQ GE+W+RGP +M
Sbjct: 309 GMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVM 368

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           +       AT  TIDK GW+HTGDLGYFD DG L++VDR+KELIKYKGFQV
Sbjct: 369 KGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQV 419

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  268 bits (687), Expect = 4e-88
 Identities = 112/231 (48%), Positives = 147/231 (63%), Gaps = 10/231 (4%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           +    +      + V L  LP +H +GL   T   L  G+ +I+M KFD E FL+ IEK+
Sbjct: 178 VQDTLKGNPDSSNDVVLTFLPFYHAYGLT-TTLASLLCGATVIIMPKFDSETFLKLIEKY 236

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VT +++VPP+ +ALAK  LV K+DLSSL+++ SGAAPL KEL EE  K  P+ T+ QGY
Sbjct: 237 KVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGY 296

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET    T+          GS G L P VEA IV  D  K L PN+ GE+ ++GP +M
Sbjct: 297 GMTETGPATTLTPPGDEKP--GSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIM 354

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           +       ATK TID+ GW+HTGD+GYFD DG  Y+VDR KELIKYKG+QV
Sbjct: 355 KGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQV 405

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  234 bits (599), Expect = 2e-74
 Identities = 108/223 (48%), Positives = 149/223 (66%), Gaps = 12/223 (5%)

Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +V+ CG L+ G+ I++M KF++   L  I++H+VT    VPP+
Sbjct: 224 DDVILCVLPMFHIYSLNSVLLCG-LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPI 282

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +LA+AK  +V+K+DLSS+++V SGAAPLGKEL +     +P+A + QGYG+TE   +  M
Sbjct: 283 VLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAM 342

Query: 132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR------- 181
             +FA        GS G +    E  IV  +T   LP NQ GEI +RGP +M+       
Sbjct: 343 CLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPE 402

Query: 182 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           AT  TIDK GW+HTGD+GY D D +L++VDR+KELIKYKGFQV
Sbjct: 403 ATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQV 445

Length = 537

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  213 bits (546), Expect = 1e-68
 Identities = 92/221 (41%), Positives = 124/221 (56%), Gaps = 15/221 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  +PLFHVFGL +     L  G+ ++LM KFD    LR IE+ R+T +  VP + +A
Sbjct: 45  RTLVPVPLFHVFGLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIA 104

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +H    KFDLSSL+   SG AP+  EL+    +  P A +  GYG+TETSG+ T    
Sbjct: 105 LLEHPDFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ--- 161

Query: 135 FAGSRN----IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------AT 183
            +G        G+ G   PGVE  IV  D    +PP ++GEI +RG ++M+       AT
Sbjct: 162 TSGDDPYEDRPGTVGRPLPGVEVKIVDPDGG-EVPPGEVGEICVRGYSVMKGYYNDPEAT 220

Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
              ID  GW+HTGDLGY D DG L +V RIK++I   G  +
Sbjct: 221 AEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENI 261

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  215 bits (549), Expect = 6e-67
 Identities = 95/220 (43%), Positives = 138/220 (62%), Gaps = 8/220 (3%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V+L  LP+FH++GL++   G L  GS I++M +FD    ++ I++ +VTH  VVPP++
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL 303

Query: 73  LALAKHGL-VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +AL K    V    L SLK V  GAAPL  + +++  + +P    IQGYG+TE++ + T 
Sbjct: 304 MALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTR 363

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
             +        S G LAP ++A +V   T   LPP   GE+W++GP +M+       AT+
Sbjct: 364 GFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQ 423

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            TIDK GW+ TGD+ YFD DG LY+VDR+KE+IKYKGFQ+
Sbjct: 424 STIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQI 463

Length = 560

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  209 bits (535), Expect = 1e-65
 Identities = 89/217 (41%), Positives = 120/217 (55%), Gaps = 11/217 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            FL  LPLFH+FGL V     L+ G+  +L+  F     L+ I+++R T    VP L  A
Sbjct: 170 RFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNA 229

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L  H   KK+D SSL+L  SG APL  E+ E   +    A +++GYGLTETS + T+ N 
Sbjct: 230 LLNHPEFKKYDFSSLRLCISGGAPLPVEVAER-FEEKTGAPLVEGYGLTETSPVTTV-NP 287

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
             G R  GS G   PG E  IV  +    LPP ++GE+ +RGP +M+        T   +
Sbjct: 288 LDGERKPGSIGLPLPGTEVKIVDDEGN-ELPPGEVGELVVRGPQVMKGYWNRPEETAEVL 346

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
              GW+ TGD+GY D DG  Y+VDR K++I   GF V
Sbjct: 347 T-DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNV 382

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  202 bits (517), Expect = 2e-64
 Identities = 89/231 (38%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            V            V+L   PL+H  G   +    L  G  ++LM KFD E  L  IE+H
Sbjct: 30  AVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPA-LAAGGTVVLMPKFDPEAVLDLIERH 88

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH ++VP +   L +     ++DLSSL+L+  GAAP+  EL     +       +QGY
Sbjct: 89  RVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAAPMPAELKRAMIE-WFGPVFVQGY 147

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET    T+ +     R +GS G   PGVE  IV  D  + LPP ++GEI +RGP +M
Sbjct: 148 GMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDEDG-RELPPGEVGEIVVRGPAVM 206

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                   AT   + + GW+HTGDLGY D DG LY+VDR K++I   G  +
Sbjct: 207 AGYWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENI 256

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  200 bits (511), Expect = 1e-61
 Identities = 93/218 (42%), Positives = 121/218 (55%), Gaps = 11/218 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V L  LPLFH+FGL V     L  G  ++L+    FD E  L  IEK++VT +  VP  +
Sbjct: 216 VVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFL 275

Query: 73  LALAKHGLVKKFDLSS-LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
             L  +      DLSS L+LV SG APL  EL+E   +      +++GYGLTETS + T+
Sbjct: 276 RELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTI 335

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
                     GS G   PGVE  IV  D  + L P ++GEIW+RGPN+M+       AT 
Sbjct: 336 NPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVL-PGEVGEIWVRGPNVMKGYWNRPEATA 394

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 222
              D+ GW+ TGDLGY D DG LY+V R+K+LI   G 
Sbjct: 395 EAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGE 432

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  193 bits (492), Expect = 6e-60
 Identities = 76/221 (34%), Positives = 113/221 (51%), Gaps = 13/221 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL--EMFLRAIEKHRVTHIWVVPPLI 72
             L +LPL     +  I    L  G  ++L+ KF L     L  IEK++VT ++ VP L+
Sbjct: 174 RVLLLLPLHFDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLL 232

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L K    KK+DLSSL+LV SG  PL  EL+    +      ++ GYG TET+ +AT  
Sbjct: 233 RLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATAN 292

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKL 185
                    GS G   PGVE  ++  + + P+PP ++GE+ +RGP + R        T  
Sbjct: 293 LPGDPEVKPGSIGRPLPGVEVKVLDEEGE-PVPPGEVGELCIRGPGVARGYLNDPELTAE 351

Query: 186 TIDKKGWV--HTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
              + GW    TGDLG +D DG L ++ R  + +K +G ++
Sbjct: 352 RFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERI 392

Length = 412

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  189 bits (482), Expect = 3e-59
 Identities = 90/215 (41%), Positives = 122/215 (56%), Gaps = 11/215 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD-LEMFLRAIEKHRVTHIWVVPPLIL 73
           V L VLPLFHV G      G L  G  ++L   F     FL  IE++RVT ++ VP L  
Sbjct: 43  VLLSVLPLFHVVGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYD 102

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           ALAK    + +DLSSL+L+ SG  PL  EL+E   +  P A +++GYGLTETS + +  N
Sbjct: 103 ALAKAAEDRGYDLSSLRLLISGGEPLSPELLER-FEERPGAPILEGYGLTETSVVTST-N 160

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLT 186
             +  +  G+ G   PGVE  +V  +  KPLPP ++GE+ +RGP +M+        T   
Sbjct: 161 PDSELKKPGTVGRPVPGVEVRVVDEEG-KPLPPGEVGELVVRGPWVMKGYWNNPPETTAA 219

Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
             + GW  TGDLGY D +G LY+  R K+LIK  G
Sbjct: 220 ATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGG 254

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  177 bits (452), Expect = 6e-53
 Identities = 85/220 (38%), Positives = 117/220 (53%), Gaps = 17/220 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V+L ++P+FHV    +     L  G+  ++  +FD E  L  IE  RVT  + VP +   
Sbjct: 210 VYLVIVPMFHVHAWGLPYLA-LMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQM 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM--- 131
           L K       D SSL+LV  G A L   L+ E  +      ++QGYG+TETS + ++   
Sbjct: 269 LLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE-KFGIDLVQGYGMTETSPVVSVLPP 327

Query: 132 -ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMMR------- 181
            +          SAG   PGVEA IV  D    LPP+  ++GEI +RGP +M+       
Sbjct: 328 EDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPE 386

Query: 182 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
           AT  TID  GW+HTGD+GY D DG LY+ DRIK++I   G
Sbjct: 387 ATAETID-GGWLHTGDVGYIDEDGYLYITDRIKDVIISGG 425

Length = 521

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  175 bits (446), Expect = 4e-52
 Identities = 89/220 (40%), Positives = 127/220 (57%), Gaps = 12/220 (5%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L ++P FH++G+  I C  L+    +++M++F+L  FL A+    V+   +VPP+IL L 
Sbjct: 231 LGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLV 290

Query: 77  KHGLVKKFDLSSLKL--VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           K+ +V++FDLS LKL  + + AAPL  EL+       P   V + YGLTE S I      
Sbjct: 291 KNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGD 350

Query: 135 FAGSRNIG---SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TK 184
                 I    S G + P +E   +  DT + LP N  GE+ +R   +M+        T 
Sbjct: 351 PEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETD 410

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            TID+ GW+HTGD+GY D DG +++VDRIKELIKYKGFQV
Sbjct: 411 RTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQV 450

Length = 546

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  174 bits (443), Expect = 1e-51
 Identities = 81/219 (36%), Positives = 114/219 (52%), Gaps = 15/219 (6%)

Query: 17  LCVLPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L   P FHVFG    V     L +G+ I+ +  FD +   R IE  R+T +   P +  +
Sbjct: 211 LAANPFFHVFGYKAGVNAP--LMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNS 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +H      DLSSL+L  +GAA +   L+E     +    V+ GYGL+E SG+ T  N 
Sbjct: 269 LLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTF-NR 327

Query: 135 FAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKL 185
               R    G+ G    GVE  IV+   +  +P  ++GE+ +RGPN+M+       AT  
Sbjct: 328 LDDDRKTVAGTIGTAIAGVENKIVNELGE-EVPVGEVGELLVRGPNVMKGYYDDPEATAA 386

Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            ID  GW+HTGDLG  D +G LY+VDR K++    GF V
Sbjct: 387 AIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNV 425

Length = 513

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  170 bits (432), Expect = 8e-51
 Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 19/223 (8%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFHV G+       +  G+ ++L+ ++D E   RAIE++RVTH   +  +++ 
Sbjct: 127 VLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVD 186

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATM 131
           L  H     +DLSSLK+VG G A L   + E         T     +GYGLTET      
Sbjct: 187 LLAHPRFADYDLSSLKVVGGGGAALPPAVAERLKA----LTGLLYEEGYGLTETHTCTHF 242

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM----------R 181
                        G    G +A ++  +T + LPP + GEI +RGP +            
Sbjct: 243 NPPDRPKP--QCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATA 300

Query: 182 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            + + +D K +  TGDLGY D +G  + +DR+K +I   G++V
Sbjct: 301 ESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKV 343

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  161 bits (409), Expect = 4e-48
 Identities = 75/211 (35%), Positives = 98/211 (46%), Gaps = 14/211 (6%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+PLFH+ GL V     L  G  ++   KF    F   I K+RVT    VP +   L 
Sbjct: 47  LNVMPLFHIHGLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILL 106

Query: 77  KHGLVKKFD-LSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIATMEN 133
           K            L+ + S +APL   +++   K   VP   V++ YG+TE +       
Sbjct: 107 KTAKPNPGKPPPRLRFIRSASAPLPPAVLDRLEKRFGVP---VLEAYGMTEAAHQIASNP 163

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR------ATKLTI 187
                R  GS G    GVE  I+  D + PLPP Q GEI +RGPN+              
Sbjct: 164 LPPLVRKPGSVG-RPAGVEVAILDDDGR-PLPPGQEGEIVIRGPNVTAGYLNNPEANREA 221

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
            + GW  TGDLGY D DG L++  RIKELI 
Sbjct: 222 FRDGWFRTGDLGYLDEDGYLFLTGRIKELIN 252

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  157 bits (397), Expect = 6e-45
 Identities = 86/220 (39%), Positives = 133/220 (60%), Gaps = 8/220 (3%)

Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           E + V L VLP FHV+G+  +    + +G  ++L+ KFD++M   AI+KH+VT     P 
Sbjct: 247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPT 306

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
           + +AL    L+K++D+SS++   SG+APL  E+ E+  + V    +++GYGLTE+S + T
Sbjct: 307 IYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEK-FETVTGGKLVEGYGLTESSPV-T 364

Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA------TK 184
             N     R  GS G   P  EA+I+S++T + LPP ++GEI ++GP +M+         
Sbjct: 365 HSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEET 424

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             + + GW+HTGD+GY D DG  YV DR K++I   GF V
Sbjct: 425 AAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNV 464

Length = 563

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  144 bits (365), Expect = 1e-40
 Identities = 77/228 (33%), Positives = 107/228 (46%), Gaps = 40/228 (17%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL- 71
               L  LPL HVF   +     L  G+ +        E  L  + + R T  + VP + 
Sbjct: 129 GDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLREVRPTVFFAVPRVW 186

Query: 72  ------ILA-LAKHGLVKK--FD----LSSLKLVGSGAAPLGKELMEECAK-NVPSATVI 117
                 I A +A  G +K+  F        L+   SG APL  E++E      +P   ++
Sbjct: 187 EKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFRALGIP---IL 243

Query: 118 QGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
           +GYGLTETSG+AT+  +  G   IG+ G   PGVE  I              GEI +RGP
Sbjct: 244 EGYGLTETSGVATV--NRPGDIRIGTVGKPLPGVEVRIAED-----------GEILVRGP 290

Query: 178 NMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
           N+M+       AT   +D+ GW+HTGD+G  D DG L + DR K+LI 
Sbjct: 291 NVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIV 338

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  140 bits (353), Expect = 1e-38
 Identities = 86/227 (37%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 5   DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            + T G+++ V +CVLPLFH++ L VI    L++G  I L  +FD+    R IE+ R T 
Sbjct: 231 SRATRGDVERV-ICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATV 289

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE 124
              VP + +ALA    ++K DLSSL  +GSG APL  E+     +      +  G+G+TE
Sbjct: 290 FPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTE 348

Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPLPPNQLGEIWLRGPNMMRA- 182
           T    T  +   G    GS G + PG+E  +VS+ D  K LPP ++GE+ +RGPN+ R  
Sbjct: 349 TCSPGT-GHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGY 407

Query: 183 -TKLTIDKKGWVH----TGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             +     + +V     TGD+GY D DG  ++VDR K++I   GF V
Sbjct: 408 WNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNV 454

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  137 bits (347), Expect = 2e-38
 Identities = 82/212 (38%), Positives = 107/212 (50%), Gaps = 30/212 (14%)

Query: 17  LCVLPLFHVFGLAVIT-CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP-LILA 74
           L  LPLFHV GLA++     L  G  ++L  KFD E    A+E H VTHI +VP  L   
Sbjct: 122 LLSLPLFHVSGLAIVMRS--LLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL 179

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC-AKNVPSATVIQGYGLTET-SGIATME 132
           L   G      LSSL+ V  G AP+   L+E+   + +P   +   YG+TET S +AT++
Sbjct: 180 LESLG---ARWLSSLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVATLK 233

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKL 185
                   +GS G   PG E  IV           Q GEI +RGP++          T  
Sbjct: 234 PDDF-LAKLGSVGKPLPGRELRIV---------NPQDGEILVRGPSLFLGYLPQGGLTPP 283

Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
             D+ GW HTGDLGY D +G LYV+ R  +LI
Sbjct: 284 L-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLI 314

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  137 bits (348), Expect = 8e-38
 Identities = 79/242 (32%), Positives = 115/242 (47%), Gaps = 57/242 (23%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP--LI 72
           V L VLPLFHV G+       +  G+ ++LM ++D E   R IE++RVTH W   P  ++
Sbjct: 233 VVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTH-WTNIPTMVV 291

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPL----GKELMEECAKNVPSATVIQGYGLTETS-- 126
             LA  GL  + DLSSL+ +G G A +     + L E           ++GYGLTET   
Sbjct: 292 DFLASPGL-AERDLSSLRYIGGGGAAMPEAVAERLKELTG-----LDYVEGYGLTETMAQ 345

Query: 127 --------------GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI 172
                         GI T                   GV+A ++  +T + LPP ++GEI
Sbjct: 346 THSNPPDRPKLQCLGIPTF------------------GVDARVIDPETLEELPPGEVGEI 387

Query: 173 WLRGPNMMR-------ATK---LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 222
            + GP + +       AT    + ID K +  TGDLG  D +G  ++ DR+K +I   GF
Sbjct: 388 VVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGF 447

Query: 223 QV 224
           +V
Sbjct: 448 KV 449

Length = 546

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  135 bits (343), Expect = 2e-37
 Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 32/217 (14%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  +P+FH+ GL+ I    +  G  ++L+ KFD E   + ++   VT I VV  ++    
Sbjct: 186 LAAVPIFHISGLS-ILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTML---- 240

Query: 77  KHGLVKKFDL----SSLK--LVGSGAAPLGKELMEEC-AKNVPSATVIQGYGLTET-SGI 128
              L+++       SS +  L+G G AP  K L+E+C  K +P   V Q YG+TET S I
Sbjct: 241 -QRLLERLGEGTYPSSFRCMLLGGGPAP--KPLLEQCKEKGIP---VYQSYGMTETASQI 294

Query: 129 ATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR------ 181
            T+    A ++ +GSAG  L P  E  I        +PP + GEI ++GPN+ +      
Sbjct: 295 VTLSPEDALTK-LGSAGKPLFP-CELKIE--KDGVVVPPFEEGEIVVKGPNVTKGYLNRE 350

Query: 182 -ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
            AT+ T  + GW  TGD+GY D +G LYV+DR  +LI
Sbjct: 351 DATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLI 386

Length = 483

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  131 bits (333), Expect = 6e-37
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 16/225 (7%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL-EMFLRAIEKHRVTHIWVVPPL 71
           D   L VLP    +GL+ +     + G  ++L ++F      L+ + K R+T    VP  
Sbjct: 43  DDRILAVLPFSFDYGLSQLLT-AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTT 101

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
              L +   + + D  SL+ + +    L  + + +  +  P A +   YGLTE      +
Sbjct: 102 WAQLLRLDPLAREDFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYL 161

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
                  R   S G   P VE  +V  +      P ++GE+  RG N+M+       AT 
Sbjct: 162 PPEELDRR-PDSIGKAIPNVELWVVD-EDGNRCAPGEVGELVHRGANVMKGYWNDPEATA 219

Query: 185 -----LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                  +  +  ++TGDL   D +G LY V R  ++IK +G++V
Sbjct: 220 ERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRV 264

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  131 bits (332), Expect = 7e-36
 Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 10/220 (4%)

Query: 15  VFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L VLP  H F L+     G L  G  ++L      ++    IE+ +VTH  +VP L+ 
Sbjct: 182 VYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLN 241

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
              +     + DLSSL+++  G APL  EL     +      + Q +G+ E     T  +
Sbjct: 242 LWLEAAEWDQADLSSLRVIQVGGAPLSPELARR-VEERLGCPLQQVFGMAEGLVNYTRLD 300

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLT 186
                        ++P  E  IV    + P+PP ++GE+  RGP  +R            
Sbjct: 301 DPPDVIMRTQGRPISPADEIRIVDDQGE-PVPPGEVGELLTRGPYTIRGYYRAPEHNARA 359

Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
               G+  TGDL   D DG   VV RIK+ I   G +++ 
Sbjct: 360 FTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISP 399

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  127 bits (322), Expect = 9e-35
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 14/221 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPL HV GL       L  G+ +  + +FD +         R+T    VP +   
Sbjct: 131 VLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR 190

Query: 75  LAKH---GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           L +H            +L+L  SG+A L   ++E   +     T+++ YG+TET G+A  
Sbjct: 191 LLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEE-RTGHTLLERYGMTET-GMAL- 247

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
            N   G R  G+ G   PGVE  IV  D  +PL   ++GEI +RGPN+         AT 
Sbjct: 248 SNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATA 307

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKEL-IKYKGFQV 224
               + GW  TGD+G  D DG   ++ R  +  IK  G++V
Sbjct: 308 EAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKV 348

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  127 bits (321), Expect = 6e-34
 Identities = 68/261 (26%), Positives = 95/261 (36%), Gaps = 76/261 (29%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
             L  LPL H+F  A      L     + ++ K D    L  +++ R T +  VP +   
Sbjct: 235 RVLSFLPLAHIFERAFEGGLAL--YGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEK 292

Query: 72  ------------------ILALAKHGLVKKFDLS-------------------------- 87
                             +   A     KK   +                          
Sbjct: 293 VYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG 352

Query: 88  -SLKLVGSGAAPLGKELMEECAKNVPSA--TVIQGYGLTETSGIATMENSFAGSRNIGSA 144
             ++   SG APL  EL         S    +++GYGLTETS + ++ N       +G+ 
Sbjct: 353 GRIRYALSGGAPLSPEL----LHFFRSLGIPILEGYGLTETSAVVSV-NPP-DRFVLGTV 406

Query: 145 GALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGD 197
           G   PG+E  I              GEI +RGPN+M+       AT     + GW  TGD
Sbjct: 407 GKPLPGIEVKIADD-----------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGD 455

Query: 198 LGYFDGDGQLYVVDRIKELIK 218
           LG  D DG L +  R KELIK
Sbjct: 456 LGELDEDGYLVITGRKKELIK 476

Length = 613

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  126 bits (318), Expect = 9e-34
 Identities = 78/239 (32%), Positives = 117/239 (48%), Gaps = 20/239 (8%)

Query: 1   MVTMDQETAGELDY----VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRA 56
           + TM Q    E ++     FL   PL H  G   +    L +G  +I++AKFD    LRA
Sbjct: 193 IATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPT--LLRGGTVIVLAKFDPAEVLRA 250

Query: 57  IEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
           IE+ R+T  ++VP +I AL  H  ++  DLSSL+ V  GA+P+    + E A        
Sbjct: 251 IEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAE-AIERFGPIF 309

Query: 117 IQGYGLTET-SGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI 172
            Q YG TE    I  +   ++     + + S G   PG+   ++  D +  +   ++GEI
Sbjct: 310 AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGR-EVAQGEVGEI 368

Query: 173 WLRGPNMM-------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            +RGP +M         T     + GW+HTGD+   D DG  Y+VDR K++I   GF V
Sbjct: 369 CVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNV 426

Length = 524

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  125 bits (316), Expect = 3e-33
 Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 19/227 (8%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
           G+     L  LP+FH +GL +     +  G  ++L+   D+++ L A++KH  T +  VP
Sbjct: 259 GDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVP 318

Query: 70  PL---ILALA-KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET 125
           PL   I   A + G+    DLS ++   SGA  L    +E   K +    +++GYGLTET
Sbjct: 319 PLYEKIAEAAEERGV----DLSGVRNAFSGAMALPVSTVELWEK-LTGGLLVEGYGLTET 373

Query: 126 SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPLPPNQLGEIWLRGP------- 177
           S I  + N  +  R  G  G   P  E  IV  +   + +P  + GE+ +RGP       
Sbjct: 374 SPII-VGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYW 432

Query: 178 NMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           N    T  +    GW  TGD+   + DG + +VDRIKELI   GF V
Sbjct: 433 NRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNV 478

Length = 573

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  123 bits (310), Expect = 8e-33
 Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 13/207 (6%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LPLFH+ G+ +     L  G  II+  KF+    L  IEKH+VT +  VP +  AL   
Sbjct: 196 LLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINC 255

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTETSGIATMENSFAG 137
              +  +L S++   +G AP  +ELM E   +        QG+G+TETS    M +    
Sbjct: 256 SKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFG---QGFGMTETSPTVFMLSEEDA 312

Query: 138 SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKK 190
            R +GS G      +  ++  +  K +   ++GE+ +RGPN+M+       AT+ TI + 
Sbjct: 313 RRKVGSIGKPVLFCDYELIDENKNK-VEVGEVGELLIRGPNVMKEYWNRPDATEETI-QD 370

Query: 191 GWVHTGDLGYFDGDGQLYVVDRIKELI 217
           GW+ TGDL   D DG +Y+V R KE+I
Sbjct: 371 GWLCTGDLARVDEDGFVYIVGRKKEMI 397

Length = 496

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  123 bits (310), Expect = 2e-32
 Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 15/213 (7%)

Query: 17  LCV-LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILA 74
           LCV +PL+H FG+ +   G +  G+C++   + FD    L+A+E+ R T ++ VP + +A
Sbjct: 245 LCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIA 304

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA---TM 131
              H     FDLSSL+      AP   E+M      +  A V   YG+TETS ++   T 
Sbjct: 305 ELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTA 364

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
            +     R + + G   P +E  +V  D    +P  ++GE+  RG ++M+       AT 
Sbjct: 365 ADDL--ERRVETVGRTQPHLEVKVVDPDGAT-VPRGEIGELCTRGYSVMKGYWNNPEATA 421

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
            +ID+ GW+HTGDL   D  G + +V R K++I
Sbjct: 422 ESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI 454

Length = 558

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  122 bits (309), Expect = 2e-32
 Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 7/218 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           + L  LPL+H   L V     L  G+  +++   D E+ LR IE  R+T  +  P + ++
Sbjct: 214 IPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWIS 273

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +H      DLSSL+    GA+ +  E+++E  + +P       YG TE + +AT+   
Sbjct: 274 LLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGP 333

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM----RATKLTID-- 188
               R  GSAG     VE  +V  D    + P ++GEI  R P +M       + T +  
Sbjct: 334 EEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF 392

Query: 189 KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
           + GW H+GDLG  D +G + VVDR K++IK  G  V S
Sbjct: 393 RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVAS 430

Length = 523

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  122 bits (310), Expect = 2e-32
 Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 24/224 (10%)

Query: 10  GELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIW 66
            E D + + V PL+H FG  L  + C  +  G+ ++     FD    L A+E+ R T ++
Sbjct: 238 TEEDRLCIPV-PLYHCFGMVLGNLAC--VTHGATMVYPGEGFDPLATLAAVEEERCTALY 294

Query: 67  VVPPLILALAKHGLVKKFDLSSLK---LVGSGAAPLGKELMEECAKNVPSATVIQGYGLT 123
            VP + +A   H    +FDLSSL+   + GS   P   E+M+     +  + V   YG+T
Sbjct: 295 GVPTMFIAELDHPDFARFDLSSLRTGIMAGS---PCPIEVMKRVIDKMHMSEVTIAYGMT 351

Query: 124 ETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           ETS ++T    ++     + + + G   P +E  IV  +T + +P  + GE+  RG ++M
Sbjct: 352 ETSPVSTQTRTDDPLE--KRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVM 409

Query: 181 R-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           +        T   ID  GW+HTGDL   D +G + +V RIK++I
Sbjct: 410 KGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI 453

Length = 559

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  117 bits (296), Expect = 8e-31
 Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 35/221 (15%)

Query: 17  LCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           L   PL+H     +GL     G +     ++L  +FD E  L+ IE+HR+TH+ +VP + 
Sbjct: 200 LLTGPLYHSAPNAYGLRAGRLGGV-----LVLQPRFDPEELLQLIERHRITHMHMVPTMF 254

Query: 73  LALAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA-------TVIQGYGLT 123
           + L K    +  K+D+SSL+ V   AAP        C  +V  A        + + YG T
Sbjct: 255 IRLLKLPEEVRAKYDVSSLRHVIHAAAP--------CPADVKRAMIEWWGPVIYEYYGST 306

Query: 124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT 183
           E+ G  T   S     + G+ G  APG E   V  +  +PLP  ++GEI+ R       T
Sbjct: 307 ES-GAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFT 364

Query: 184 -------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
                  +  ID+ G++ +GD+GY D DG L++ DR ++++
Sbjct: 365 YHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMV 405

Length = 509

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  114 bits (288), Expect = 3e-30
 Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 21/222 (9%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA------KFDLEMFLRAIEKHRVTHIW 66
             V L  LPLFHV G  V     L +G+ ++L           +  F + +E++RVT + 
Sbjct: 43  GDVLLNGLPLFHVGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLS 102

Query: 67  VVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126
            VP ++ AL +  L    D+SSL+   +GAAPL  E+     + V    V++GYG+TE +
Sbjct: 103 AVPTVLAALLQVPLGDA-DISSLRYALTGAAPLPVEVARR-FEAVTGVPVVEGYGMTEGT 160

Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVD----TQKPLPPNQLGEIWLRGPNMM-- 180
           G++ +     G R  GS G   P     +  +D      +   P ++G + +RGPN+   
Sbjct: 161 GVSAINPRG-GPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPG 219

Query: 181 -----RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
                      ++  GW++TGDLG  D DG L++  R K+LI
Sbjct: 220 YLNDAHNAGARLED-GWLNTGDLGRIDADGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  116 bits (293), Expect = 4e-30
 Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 35/227 (15%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL-----------MAKFDLEMFLRAIEKHRVT 63
              C LPLFHV  L V     L +G+ ++L           +A F      + +E++R+ 
Sbjct: 256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANF-----WKIVERYRIN 310

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELME--ECAKNVPSATVIQGYG 121
            +  VP +  AL +   V   D+SSL+    GAAPL  E+    E A  V    +++GYG
Sbjct: 311 FLSGVPTVYAALLQVP-VDGHDISSLRYALCGAAPLPVEVFRRFEAATGVR---IVEGYG 366

Query: 122 LTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD----TQKPLPPNQLGEIWLRGP 177
           LTE + ++++ N   G R IGS G   P     +V +D      +    +++G + + GP
Sbjct: 367 LTEATCVSSV-NPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGP 425

Query: 178 NM----MRATK---LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           N+    + A     L ++  GW++TGDLG  D DG  ++  R K+LI
Sbjct: 426 NVFSGYLEAAHNKGLWLED-GWLNTGDLGRIDADGYFWLTGRAKDLI 471

Length = 632

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  115 bits (289), Expect = 7e-30
 Identities = 68/213 (31%), Positives = 102/213 (47%), Gaps = 14/213 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V L  LPLFH FGL V     L  G  ++      D +     I  ++ T +   P  + 
Sbjct: 188 VLLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLR 247

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
             A++      D SSL+LV +GA  L +   E   +      +++GYG TE S + ++ N
Sbjct: 248 GYARN--AHPEDFSSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVISV-N 303

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKL- 185
           +  G++  G+ G   PG+E  IVS +T + LP  + G + +RGPN+M         T   
Sbjct: 304 TPMGNK-PGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEV 362

Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
            +   GW  TGD+G  D DG L +V R+K   K
Sbjct: 363 EVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAK 395

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  114 bits (288), Expect = 1e-29
 Identities = 61/220 (27%), Positives = 89/220 (40%), Gaps = 21/220 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHRVTHIWVVPPL 71
            F        ++GL       L  G+  +L      +  E    A+EK++VT     P  
Sbjct: 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTF 274

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +  L K GL + +DLSSL+++GS   PL  E  E    +     ++  YG TET      
Sbjct: 275 LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-FYSALGVWILDIYGQTETGMGF-- 331

Query: 132 ENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN--MMR----AT 183
               AG   +  GS+G   PG     V  D   P+PP   GE+ +R P   M        
Sbjct: 332 ---IAGRPPVKNGSSGLPLPGYAVRRV-DDEGNPVPPGV-GELVVRLPWPGMALTYWNDP 386

Query: 184 KLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
           +   +     W  TGD    D DG  ++  R  ++IK  G
Sbjct: 387 ERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSG 426

Length = 528

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  113 bits (284), Expect = 2e-29
 Identities = 65/218 (29%), Positives = 93/218 (42%), Gaps = 20/218 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFH+   A      L  G+ ++L+ +F    F   + KH  T   ++  +   
Sbjct: 124 VLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAI 183

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIATME 132
           L K           L+ V    APL   +     +   V    +++GYG+TET       
Sbjct: 184 LMKQPPSPDDRDHPLRFVFG--APLPAAIWPAFEERFGVK---LVEGYGMTETGVPI--- 235

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN---MM----RATKL 185
            +       GS G   PGVE  IV  D +  +PP ++GE+ +R      M        + 
Sbjct: 236 IAPGDPAPPGSCGRPRPGVEVRIVDEDGR-EVPPGEVGELVVRPRRPWAMFKGYYGMPEA 294

Query: 186 TIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
           T      GW HTGD G  D DG LY VDR K+ I+ +G
Sbjct: 295 TAKAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRG 332

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (284), Expect = 6e-29
 Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 12/216 (5%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           LPL+H+F L V     ++ G   +L+    D+  F++ ++K+  T I  V  L  AL  +
Sbjct: 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNN 316

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS 138
              ++ D SSLKL   G   + + + E   K +    +++GYGLTE S + ++ N +   
Sbjct: 317 EEFQELDFSSLKLSVGGGMAVQQAVAERWVK-LTGQYLLEGYGLTECSPLVSV-NPYDLD 374

Query: 139 RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKG 191
              GS G   P  E  +V  D    +PP + GE+W++GP +M        AT   I K G
Sbjct: 375 YYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDG 432

Query: 192 WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
           W+ TGD+   D +G L +VDR K++I   GF V  N
Sbjct: 433 WLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPN 468

Length = 560

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  111 bits (279), Expect = 1e-28
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 26/209 (12%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  LPL+H+ GL+++    ++  +  I+     L   L  I   RVTHI +VP  +  L 
Sbjct: 156 LLSLPLYHISGLSILFRWLIEGATLRIVDKFNQL---LEMIANERVTHISLVPTQLNRLL 212

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTET-SGIATMENS 134
             G        +L+ +  G + +   L+EE     +P   +   YG+TET S + T    
Sbjct: 213 DEGGHN----ENLRKILLGGSAIPAPLIEEAQQYGLP---IYLSYGMTETCSQVTTATPE 265

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA----TKL--TID 188
              +R     G    G E  I  VD ++       GEI ++G N+M+      +L    +
Sbjct: 266 MLHAR--PDVGRPLAGREIKI-KVDNKE-----GHGEIMVKGANLMKGYLYQGELTPAFE 317

Query: 189 KKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           ++GW +TGD+G  DG+G LYV+ R  +LI
Sbjct: 318 QQGWFNTGDIGELDGEGFLYVLGRRDDLI 346

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  110 bits (277), Expect = 2e-28
 Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 15/225 (6%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMAKFDLEMFLRAIE 58
            V     T  +   V L   PL H+ G    +     L  G+ ++L  ++D    L  I 
Sbjct: 125 YVERLGLTPDD---VVLMPSPLAHITGFLYGLELP--LLLGATVVLQDRWDPARALELIR 179

Query: 59  KHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +H VT      P +  L         DL SL++   G AP+ +EL    A+ +  A V++
Sbjct: 180 EHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALG-AKVVR 238

Query: 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 178
            YG+TE   +          +   + G   PGVE  IV  D    +PP + GE+ +RGP 
Sbjct: 239 AYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRIVD-DDGNDVPPGEEGELQVRGPQ 297

Query: 179 MMR----ATKLT--IDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           +          T      GW  TGDLG  D DG L +  R K++I
Sbjct: 298 LFLGYLDPPDNTEAFTDDGWFRTGDLGRLDADGYLRITGRKKDII 342

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  109 bits (275), Expect = 1e-27
 Identities = 52/141 (36%), Positives = 68/141 (48%), Gaps = 16/141 (11%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA 148
           ++L+ SG APL  +  E   +      V+QGYGLTET    T+  S  G    G  G   
Sbjct: 271 VRLMLSGGAPLSPDTQEFL-RVALGCPVLQGYGLTETCAGGTL--SDPGDTTTGHVGPPL 327

Query: 149 PGVEALIVSVD----TQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGD 197
           P  E  +V V       K  PP   GEI +RGPN+ +        T    D+ GW HTGD
Sbjct: 328 PCCEIKLVDVPEMGYFAKDDPPR--GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGD 385

Query: 198 LGYFDGDGQLYVVDRIKELIK 218
           +G +  DG L ++DR K L K
Sbjct: 386 IGEWLPDGTLKIIDRKKNLFK 406

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  109 bits (274), Expect = 1e-27
 Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 40/222 (18%)

Query: 13  DYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           D V+L   PL+H     FG++ +  G       +++M KFD E  L  IE++RVTH  +V
Sbjct: 187 DSVYLSPAPLYHTAPLRFGMSALALGGT-----VVVMEKFDAEEALALIERYRVTHSQLV 241

Query: 69  PPL---ILALAKHGLVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSA-------TVI 117
           P +   +L L +   V+ ++D+SSL++    AAP        C   V  A        + 
Sbjct: 242 PTMFVRMLKLPEE--VRARYDVSSLRVAIHAAAP--------CPVEVKRAMIDWWGPIIH 291

Query: 118 QGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
           + Y  +E  G+ T+  S     + GS G    G E  I+  +    LPP ++G ++    
Sbjct: 292 EYYASSEGGGV-TVITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELPPGEIGTVYFEMD 348

Query: 178 -------NMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 212
                  N    T    +  GWV  GD+GY D DG LY+ DR
Sbjct: 349 GYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDR 390

Length = 502

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  109 bits (273), Expect = 1e-27
 Identities = 73/221 (33%), Positives = 102/221 (46%), Gaps = 13/221 (5%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L V PL+HV    +     L  G  + +  +FD E  L AIE+HR+T  W+ P ++  +
Sbjct: 193 LLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRV 252

Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGIATMENS 134
                  +FDL SL     G     +  + +  +    A  I  YGLTET SG   ME  
Sbjct: 253 LTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLME-- 310

Query: 135 FAGSR--NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKK-- 190
            AG     IGS G     VE  I      + LPPN  GEI +RGP + +      +K   
Sbjct: 311 -AGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAE 368

Query: 191 ----GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
                W  +GD+GY D +G LY+ DR K++I   G  + S+
Sbjct: 369 AFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASS 409

Length = 497

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  108 bits (272), Expect = 2e-27
 Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 11/211 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V    +PLFH+ G+  +  G L  G+  ++  +  FD    L  +E  +VT I++VP   
Sbjct: 218 VGFVGVPLFHIAGIGSMLPG-LLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQW 276

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
            A+      +  DL+ L+++  GAAP    L+ + A   P A ++  +G TE S +  M 
Sbjct: 277 QAVCAEQQARPRDLA-LRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCML 335

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM----RATKLTID 188
                 R +GS G + P V A +V  +    +P  ++GEI  R P +M       + T +
Sbjct: 336 LGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAE 394

Query: 189 --KKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
               GW H+GDL   D +G ++VVDR K++I
Sbjct: 395 AFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI 425

Length = 542

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  108 bits (272), Expect = 2e-27
 Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 36/229 (15%)

Query: 15  VFLCVLPLFHVFG-----LAVITCGQLQKGSCIILMAKF-DLEMFLRAIEKHRVTHIWVV 68
             L V+P+FHV        A +       G+ ++L  ++ D    L  IE+ +VT    V
Sbjct: 207 TVLPVVPMFHVNAWGLPYAATMV------GAKLVLPGRYLDPASLLDLIEEEKVTVSAGV 260

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128
           P + L L  +      DLSSL+ V  G + L + L+E+  +      VI  +G+TETS +
Sbjct: 261 PTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEER--GVEVIHAWGMTETSPL 318

Query: 129 ATMENSFAGSRNIG---------SAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGP 177
            T+        ++            G   PGVE  IV  +    LP +   +GE+ +RGP
Sbjct: 319 GTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGN-ELPWDGKTVGELVVRGP 377

Query: 178 --------NMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
                   +  +  +LT D  GW  TGD+   D DG + + DR K++IK
Sbjct: 378 WVTGSYYKDPEKTEELTRD--GWFRTGDVAVIDEDGYIQITDRAKDVIK 424

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  107 bits (270), Expect = 5e-27
 Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 11/221 (4%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +  LPL+H++   A   C  +     +++    D+  F++ + K R + +  +  L +
Sbjct: 260 VMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFV 319

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           AL  H   K  D S+LKL  SG   L K   E   + +   T+++GYGLTETS +A+  N
Sbjct: 320 ALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQ-LTGCTIVEGYGLTETSPVAST-N 377

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLT 186
            +     +G+ G   PG  AL V  D    LP  + GE+ ++GP +M+       AT   
Sbjct: 378 PYGELARLGTVGIPVPGT-ALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEA 436

Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
           +D +GW  TGD+   D DG + +VDR K+LI   GF V  N
Sbjct: 437 LDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPN 477

Length = 562

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  106 bits (268), Expect = 1e-26
 Identities = 70/223 (31%), Positives = 100/223 (44%), Gaps = 22/223 (9%)

Query: 11   ELDYVFLCVLPLFHVFGLAVITCGQLQKG-SCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
              D V L  LP FH FGL V     L +G   +      D     + + KHR T +   P
Sbjct: 821  RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTP 880

Query: 70   PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
              +    ++  +     +SL+LV +GA  L  E+ +   +      +++GYG TETS +A
Sbjct: 881  TFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVA 939

Query: 130  T--MENSFA-------GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
            +  + +  A       GS+  GS G   PGV   IV  +T + LPP + G I + GP +M
Sbjct: 940  SVNLPDVLAADFKRQTGSKE-GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVM 998

Query: 181  -----RATKL-----TIDKKGWVHTGDLGYFDGDGQLYVVDRI 213
                    K       ID  GW  TGD G+ D DG L + DR 
Sbjct: 999  KGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRY 1041

Length = 1146

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score =  105 bits (265), Expect = 2e-26
 Identities = 67/220 (30%), Positives = 98/220 (44%), Gaps = 33/220 (15%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
             L   P+FH  G A +T   +  GS ++L  +FD E  L  I KH+ T + VVP +   
Sbjct: 250 TTLLPAPMFHATGWAHLTLA-MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSR 308

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-------NVPSATVIQGYGLTE 124
           IL L    L  K+D SSLK++    + L  EL     +       N+        YG TE
Sbjct: 309 ILDLGPEVL-AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNL--------YGSTE 359

Query: 125 TS--GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR- 181
            +   IAT E+    +   G+ G    GV   I+  +    +P   +G I++        
Sbjct: 360 VAFATIATPEDL---AEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEG 415

Query: 182 ----ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
                 K  ID  G + +GD+GYFD DG L+V  R  ++I
Sbjct: 416 YTDGRDKQIID--GLLSSGDVGYFDEDGLLFVDGRDDDMI 453

Length = 549

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  105 bits (265), Expect = 2e-26
 Identities = 70/258 (27%), Positives = 106/258 (41%), Gaps = 71/258 (27%)

Query: 20  LPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMF-------LRAIEKHRVTHIWVVPP 70
           LPL+H  GL   ++    L  G  ++LM+      F       L AI ++R T     P 
Sbjct: 196 LPLYHDMGLIGGLLQP--LYAGFPVVLMSPLA---FLRRPLRWLEAISRYRATVSGA-PN 249

Query: 71  LILALAKHGLVKKF--------DLSSLKLVGSGAAPLGKELMEE-CAKNVP---SATVIQ 118
               L     V++         DLSS ++  +GA P+  + +E    +  P         
Sbjct: 250 FAYDLC----VRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFL 305

Query: 119 -GYGLTETSGIATM-------------------------ENSFAGSRNIGSAGALAPGVE 152
             YGL E +   +                              A +R + S G   PG E
Sbjct: 306 PCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHE 365

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------------ATKLTIDKKGWVHTGDLG 199
             IV  +T++PLP  ++GEIW+RGP++                 +L  D+ GW+ TGDLG
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425

Query: 200 YFDGDGQLYVVDRIKELI 217
           +   DG+LYV  R+K+LI
Sbjct: 426 FLH-DGELYVTGRLKDLI 442

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  103 bits (257), Expect = 2e-25
 Identities = 70/221 (31%), Positives = 106/221 (47%), Gaps = 11/221 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +  LPL+H+F L       ++ G C  L++   D+  F++ ++K R T    V  L  
Sbjct: 256 VVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFN 315

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
            L       + D SSLK+   G   + + + E   K V   T+++ YGLTETS  A + N
Sbjct: 316 GLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERW-KQVTGLTLVEAYGLTETSPAACI-N 373

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKLT 186
                   GS G   P  +A I   D    L   ++GE+ ++GP +M+        T   
Sbjct: 374 PLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKV 432

Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
           +D  GW+HTGD+   D  G +Y+VDR K++I   GF V  N
Sbjct: 433 MDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPN 473

Length = 560

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  100 bits (252), Expect = 1e-24
 Identities = 70/221 (31%), Positives = 109/221 (49%), Gaps = 16/221 (7%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP+FH  GL V T   L  G+ +I + KFD +  L  +   R T +  VP   
Sbjct: 197 DDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFY 254

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   + +   + ++L  SG+APL  E   E  +    A +++ YG+TET+   +  
Sbjct: 255 TRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGHA-ILERYGMTETNMNTS-- 311

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR---------AT 183
           N + G R  G+ G   PGV   +   +T   LPP ++G I ++GPN+ +         A 
Sbjct: 312 NPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAE 371

Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           +   D  G+  TGDLG  D  G +++V R K+LI   G+ V
Sbjct: 372 EFRAD--GFFITGDLGKIDERGYVHIVGRGKDLIISGGYNV 410

Length = 504

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  100 bits (250), Expect = 2e-24
 Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 49/235 (20%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP------ 69
            L  LPL H+    ++  G L  G+ +  +    L+ F   +++ R T  + VP      
Sbjct: 181 LLSYLPLAHIAERVIVEGGSLYSGAEVFFV--ESLDTFAADLQRARPTVFFSVPRLWTKF 238

Query: 70  -------------------PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
                              P++ +L K  ++K   L   +L GSGAAP+   L+    K 
Sbjct: 239 QQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRK- 297

Query: 111 VPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG 170
                + +GYG+TE    +T+  ++ G R IG+ G   PGVE  I           ++ G
Sbjct: 298 -LGLPICEGYGMTENFAYSTL--NYPGDRRIGTVGKPIPGVELKI-----------SEDG 343

Query: 171 EIWLRGP-NMM------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
           EI +R P  M         T     + GW+HTGD G  D DG L +  R+KEL K
Sbjct: 344 EILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFK 398

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  100 bits (250), Expect = 2e-24
 Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 17/224 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
            F+C LPL+H+F L V     ++ G   IL+    D+  F++ ++K++V     V  L  
Sbjct: 254 NFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYN 313

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIAT 130
           AL  +    K D S L +   G    G  +    A+     T   + +GYGL+ETS +AT
Sbjct: 314 ALLNNPDFDKLDFSKLIVANGG----GMAVQRPVAERWLEMTGCPITEGYGLSETSPVAT 369

Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------T 183
             N    +   G+ G   P  E  I   D    LP  + GEI +RGP +M         T
Sbjct: 370 C-NPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDET 427

Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
              +   G+  TGD+G  D  G   +VDR K++I   GF V  N
Sbjct: 428 AKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPN 471

Length = 557

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 99.8 bits (249), Expect = 3e-24
 Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 12/216 (5%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           LPL+H++         +  G+  IL++   DL   ++ + K + +    +  L +AL  +
Sbjct: 258 LPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN 317

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS 138
              +K D S+LKL  SG   L      E  K V    + +GYG+TETS + ++ N     
Sbjct: 318 EAFRKLDFSALKLTLSGGMALQLA-TAERWKEVTGCAICEGYGMTETSPVVSV-NPSQAI 375

Query: 139 RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKG 191
           + +G+ G   P     ++  D    LP  ++GE+ ++GP +M+       AT   +D  G
Sbjct: 376 Q-VGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDG 433

Query: 192 WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
           W+ TGD+     DG + +VDR K++I   GF V  N
Sbjct: 434 WLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPN 469

Length = 562

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 95.4 bits (238), Expect = 9e-23
 Identities = 69/240 (28%), Positives = 104/240 (43%), Gaps = 44/240 (18%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-M-----AKFDLEMFLRAIEKHRVT 63
           GE+D   L   PLF +FG A    G     + +I  M     A  D      AIE++ VT
Sbjct: 215 GEID---LPTFPLFALFGPA---LG----MTSVIPDMDPTRPATVDPAKLFAAIERYGVT 264

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQGYGL 122
           +++  P L+  L ++G      L SL+ V S  AP+   ++E     +P  A ++  YG 
Sbjct: 265 NLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGA 324

Query: 123 TETSGIATMENS--FAGSRNIGSAGA------LAPGVEALIVSVDT--------QKPLPP 166
           TE   I+++E+      +R     GA         GVE  I+++             L  
Sbjct: 325 TEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLAT 384

Query: 167 NQLGEIWLRGPNMMR-------ATKLT--IDKKG--WVHTGDLGYFDGDGQLYVVDRIKE 215
            ++GEI + GP + R       AT+L    D +G  W   GDLGY D  G+L+   R   
Sbjct: 385 GEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAH 444

Length = 552

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 94.7 bits (236), Expect = 1e-22
 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 24/215 (11%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LP  + FG+ V+             M +FD E     + ++ VT+ ++ P  +  + + 
Sbjct: 150 LLPALY-FGVPVVAYR----------MQRFDPERAFALMRRYGVTNAFLPPTALKMMRRV 198

Query: 79  G-LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG 137
           G    ++DL  L+ V SG   LG+EL+E     +   TV + YG TE + +     +  G
Sbjct: 199 GSERARYDLR-LRAVASGGESLGEELLEWARDEL-GLTVNEFYGQTEANLVVG-NCAALG 255

Query: 138 SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN--MM----RATKLTIDK-- 189
               GS G   PG E  +V  D  +P+PP ++GEI ++ P+  M        + T  K  
Sbjct: 256 PARPGSMGKPVPGHEVAVVD-DAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFA 314

Query: 190 KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             W+ TGDLG  D DG L+   R  ++IK  G+++
Sbjct: 315 GDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRI 349

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 95.1 bits (237), Expect = 1e-22
 Identities = 67/222 (30%), Positives = 94/222 (42%), Gaps = 30/222 (13%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL- 71
           D V+L   PL+H      +     + G  +I+M  FD E +L  IE++ VTH  +VP + 
Sbjct: 200 DMVYLSPAPLYHSAPQRAVMLVI-RLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMF 258

Query: 72  --ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT------VI-QGYGL 122
             +L L +  +  K+DLSSL++    AAP        C   V          +I + Y  
Sbjct: 259 SRMLKLPEE-VRDKYDLSSLEVAIHAAAP--------CPPQVKEQMIDWWGPIIHEYYAA 309

Query: 123 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR- 181
           TE  G  T  +S     + G+ G    G   L +  D    LPP + G IW  G      
Sbjct: 310 TEGLG-FTACDSEEWLAHPGTVGRAMFGD--LHILDDDGAELPPGEPGTIWFEGGRPFEY 366

Query: 182 -----ATKLTIDKKG-WVHTGDLGYFDGDGQLYVVDRIKELI 217
                 T       G W   GD+GY D DG LY+ DR   +I
Sbjct: 367 LNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMI 408

Length = 511

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 94.0 bits (234), Expect = 3e-22
 Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 19/136 (13%)

Query: 94  SGAAPLGKELMEE-CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
           +GAAP+ +E +E   + N+P   +++ YG++ETSG  T+ N    +  + S G   PG E
Sbjct: 325 TGAAPISRETLEFFLSLNIP---IMELYGMSETSGPHTVSNP--QNYRLLSCGKALPGCE 379

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGP-------NMMRATKLTIDKKGWVHTGDLGYFDGDG 205
             I + D       + +GEI + G        NM   T+  ID+ GW+H+GDLG+ D DG
Sbjct: 380 TKIHNPDA------DGIGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDG 433

Query: 206 QLYVVDRIKELIKYKG 221
            LY+  RIKELI   G
Sbjct: 434 FLYITGRIKELIITAG 449

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 94.0 bits (234), Expect = 3e-22
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 27/236 (11%)

Query: 9   AGELDYVFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            G  D VFL  LP F +    FGL       L  G+ ++L+A++D   F+ A+E++RVT 
Sbjct: 247 VGGEDSVFLSFLPEFWIAGENFGLLF----PLFSGATLVLLARWDAVAFMAAVERYRVTR 302

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA---KNVPSATVIQG-Y 120
             ++    + L  H    ++DLSSL+ V        K+L  +     + +  + + +  +
Sbjct: 303 TVMLVDNAVELMDHPRFAEYDLSSLRQVR--VVSFVKKLNPDYRQRWRALTGSVLAEAAW 360

Query: 121 GLTETSGIATMENSF-AGSRNIGSA----GALAPGVEALIVSVDTQKPLPPNQLGEIWLR 175
           G+TET    T    F     ++ S     G   PG E  I   +T + LP    GEI +R
Sbjct: 361 GMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVR 420

Query: 176 GPNMM-------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            P+++        AT   + + GW+HTGD+G  D  G L+ + R KE++K  G  V
Sbjct: 421 TPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSV 475

Length = 567

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 92.5 bits (230), Expect = 1e-21
 Identities = 63/225 (28%), Positives = 93/225 (41%), Gaps = 20/225 (8%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L  LP   VFG + +  G L  G+ ++    FD     RA+ +HRVTH +    ++
Sbjct: 222 GAVLLAALPFCGVFGFSTLL-GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEML 280

Query: 73  LALAKHGLVKKFDLSSLKLVGSGA-APLGKELMEE-CAKNVPSATVIQGYGLTETSG--- 127
             +      +  D  S +L G  + AP   EL     A+ VP   +   YG +E      
Sbjct: 281 RRILDTAGERA-DFPSARLFGFASFAPALGELAALARARGVPLTGL---YGSSEVQALVA 336

Query: 128 IATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR----- 181
           +    +  +     G  G  A P              LP  + GEI +R P++MR     
Sbjct: 337 LQPATDPVSVRIEGG--GRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDN 394

Query: 182 --ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             AT   +   G+  TGDLGY  GDGQ     R+ + ++  GF V
Sbjct: 395 PDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLV 439

Length = 540

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 20/211 (9%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L V PL H  G+  +   Q+ +G+  +L+   +FD       +E+HRVT+++ VP ++  
Sbjct: 210 LVVAPLSHGAGIHQLC--QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKM 267

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT---- 130
           L +H  V ++D SSL+ V    AP+ +   ++ A       ++Q +GL E +G  T    
Sbjct: 268 LVEHPAVDRYDHSSLRYVIYAGAPMYRA-DQKRALAKLGKVLVQYFGLGEVTGNITVLPP 326

Query: 131 -MENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP-------NMMR 181
            + ++  G    IG+ G    G+E  I   D  + LPP + GEI + GP       N   
Sbjct: 327 ALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPE 385

Query: 182 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 212
           A      + GW  TGDLG+ D  G LY+  R
Sbjct: 386 ANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415

Length = 528

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 91.4 bits (227), Expect = 2e-21
 Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 21/216 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHR--VTHIWVVPPLI 72
            FLC  P+FH+ GL       L  G  I++   F+ +  L  +      +TH + VP + 
Sbjct: 178 SFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMA 237

Query: 73  LALAKHGLVKKFDLSSLK----LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128
            A         FD ++L+    L   GA    ++++      +P   ++ G+G++E   +
Sbjct: 238 QAFRAQ---PGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIP---MVDGFGMSEAGTV 291

Query: 129 ATMENSFAGSRN-IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR------ 181
             M       R   G+AG   P V+  +V  D     P    GE+ LRGPN+        
Sbjct: 292 FGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRP 350

Query: 182 -ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKEL 216
            AT       GW  TGD+   D DG  +VVDR K++
Sbjct: 351 QATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDM 386

Length = 488

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 24/139 (17%)

Query: 94  SGAAPLG---KELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG 150
           SG  PL    +E +     NV    VIQG+GLTET     ++    G     + G L  G
Sbjct: 435 SGGGPLSAATQEFV-----NVVFGMVIQGWGLTETVCCGGIQ--RTGDLEPNAVGQLLKG 487

Query: 151 VEALIVSVD----TQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLG 199
           VE  ++  +    T  P P    GEI LRGP + +        T+  +D+ GW HTGD+G
Sbjct: 488 VEMKLLDTEEYKHTDTPEPR---GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVG 544

Query: 200 YFDGDGQLYVVDRIKELIK 218
               +G L ++ R+K L K
Sbjct: 545 SIAANGTLRIIGRVKALAK 563

Length = 700

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 23/208 (11%)

Query: 36  LQKGSCIILMAKFDLEMFL---RAIEKHRVTHIWVVPPLILALAKHGLVKKFD---LSSL 89
           L  G+ + ++ K  +   L     +++H +T  WV  P   +L    L ++ +   L SL
Sbjct: 160 LASGATLYVIPKEQIADPLALFEFLKEHGLTV-WVSVPSFASLLL--LSRELNPESLPSL 216

Query: 90  KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT---MENSFAGSRNIGSAGA 146
           +        L K+L +   +  P+A +I  YG TE +   T   +             G 
Sbjct: 217 RTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGY 276

Query: 147 LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-----RATK-----LTIDKKGWVHTG 196
             PG+ ALI+  D  +P+PP + GE+ + GP +         K        + + W  TG
Sbjct: 277 PKPGLRALILDED-GRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTG 335

Query: 197 DLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           DL Y + DG L  + R    IK  G+++
Sbjct: 336 DLVYLEDDGLLVYLGRKDFQIKLHGYRI 363

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 88.1 bits (219), Expect = 3e-20
 Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 45/233 (19%)

Query: 15  VFLCVLPLFH------VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH       + +  +       G   + + K D       IEKH+VTH+   
Sbjct: 210 VYLWTLPMFHCNGWCFPWAITAV-------GGTHVCLRKVDAPAIYDLIEKHKVTHLCGA 262

Query: 69  PPLILALAKHGLVKKFDLSS-LKLVGSGAAPLGK--ELMEECAKNVPSATVIQGYGLTET 125
           P ++  LA      K  L   ++++ +GA P     + MEE         V   YGLTET
Sbjct: 263 PTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEELG-----FEVTHVYGLTET 317

Query: 126 SGIATM-------ENSFAGSRNI-----GSAGALAPGVEALIVSVDTQKPLPPN--QLGE 171
            G  T+       +   A  R       G        V+  +V  +T K +P +   +GE
Sbjct: 318 YGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVD--VVDPETMKDVPRDGKTIGE 375

Query: 172 IWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           I +RG  +M+       AT+      GW H+GDL     DG + + DR K++I
Sbjct: 376 IVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPDGYIEIKDRSKDII 427

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 86.9 bits (216), Expect = 7e-20
 Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 65/231 (28%)

Query: 17  LCVLPLF----HVFGLAVITCGQLQKGSCIILMA----------KFDLEMFLRAIEKHRV 62
           LC+LPL     ++ G+       L  G+ +IL+             D   F+ A+ + + 
Sbjct: 157 LCLLPLATLLENIAGVYA----PLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQP 212

Query: 63  THIWVVPPLILAL---AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQ 118
             + +VP L++AL    + G +      SL+ V  G A +   L++      +P   V +
Sbjct: 213 HSLILVPQLLMALVAAVEQGPLP---PESLRFVAVGGARVSPSLLQRARALGLP---VYE 266

Query: 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL-----GEIW 173
           GYGL+E + + ++ N+    R  GS G                KPLP  Q+     GEI 
Sbjct: 267 GYGLSECASVVSL-NTPGADR-PGSVG----------------KPLPHVQVSIANDGEIL 308

Query: 174 LRGPNMM-------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           +RG  M+                  W  TGDLG+ D +G LY+  R K LI
Sbjct: 309 VRGSLMLGYLGEPPATDD-------WWATGDLGHLDEEGYLYINGRKKNLI 352

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 85.2 bits (211), Expect = 3e-19
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 12/197 (6%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP 98
           G+  +L+  F  +  L  +E+ R T +    P I  L      +  DLS+L+    G   
Sbjct: 254 GARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTT 313

Query: 99  LGKELMEECAK-NVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS 157
           + K++  EC +  +   +V   YG TE+S  A +      SR + + G  A GVE  +V 
Sbjct: 314 IPKKVARECQQRGIKLLSV---YGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD 370

Query: 158 VDTQKPLPPNQLGEIWLRGPNMM-------RATKLTIDKKGWVHTGDLGYFDGDGQLYVV 210
            + +K LPP   GE   RGPN+          T   +D++GW ++GDL   D  G + + 
Sbjct: 371 -EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT 429

Query: 211 DRIKELIKYKGFQVTSN 227
            R K++I   G  ++S 
Sbjct: 430 GRKKDIIVRGGENISSR 446

Length = 547

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 84.2 bits (209), Expect = 7e-19
 Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 22/204 (10%)

Query: 40  SCIILMAKFDLEMFLRAIEKHRVTHIW-VVPPLILALAKHG--LVKKFDLSSLKLVGSGA 96
           + +I   +F  E + R +E ++VT +W   P  I  L   G  LVKK+DLSSL+ + S  
Sbjct: 274 TNVIDGGRFSPERWYRILEDYKVT-VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVG 332

Query: 97  APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 156
            PL  E++      V    +   + +TET GI  + N  A     GS G   PG+EA IV
Sbjct: 333 EPLNPEVVR-WGMKVFGLPIHDNWWMTETGGI-MIANYPAMDIKPGSMGKPLPGIEAAIV 390

Query: 157 SVDTQKPLPPNQLGEIWLRG--PNMMRATKLTIDKK-------GWVHTGDLGYFDGDGQL 207
             D    LPPN++G + ++   P+MMR       +K        W  +GD  Y D DG  
Sbjct: 391 D-DQGNELPPNRMGNLAIKKGWPSMMRGI-WNNPEKYESYFAGDWYVSGDSAYMDEDGYF 448

Query: 208 YVVDRIKELIKYKG-----FQVTS 226
           +   R+ ++IK  G     F+V S
Sbjct: 449 WFQGRVDDVIKTSGERVGPFEVES 472

Length = 570

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 83.8 bits (207), Expect = 1e-18
 Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 23/221 (10%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           V+PL+H  GL       L  G  ++L A  +F    F   I+    T    VP +   L 
Sbjct: 223 VMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILL 282

Query: 77  KHGLVKKFDL--SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN- 133
           +    +      ++L+ + S +APL  E   +  +   +A V+  +G+TE +   T    
Sbjct: 283 ERAATEPSGRKPAALRFIRSCSAPLTAE-TAQALQTEFAAPVVCAFGMTEATHQVTTTQI 341

Query: 134 -SFAGSRNIGSAGALAP---GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------- 181
                + N   +  L     G +  IV  D   PLP   +GE+WLRG  ++R        
Sbjct: 342 EGIGQTENPVVSTGLVGRSTGAQIRIVGSDGL-PLPAGAVGEVWLRGTTVVRGYLGDPTI 400

Query: 182 -ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
            A   T    GW+ TGDLG     G L +  RIKELI   G
Sbjct: 401 TAANFT---DGWLRTGDLGSLSAAGDLSIRGRIKELINRGG 438

Length = 534

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 82.1 bits (203), Expect = 4e-18
 Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 28/222 (12%)

Query: 13  DYVFLCVLPLFHVFGLAVITC----GQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
             V+LC LP  H F L+        G    G  ++L      E+    IE+H VT   +V
Sbjct: 230 QTVYLCALPAAHNFPLS---SPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALV 286

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128
           PPL     +    ++ DLSSL+L+  G A L   L    A+ VP+     G  L +  G+
Sbjct: 287 PPLASLWLQAAEWERADLSSLRLLQVGGARLSATL----ARRVPAVL---GCQLQQVFGM 339

Query: 129 ATMENSF-----AGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA 182
           A    ++          I + G  L+P  E  +V  D   P+ P ++GE+  RGP  +R 
Sbjct: 340 AEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGN-PVAPGEVGELLTRGPYTIRG 398

Query: 183 -------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
                       D  G+  +GDL   D DG L V  R+K+ I
Sbjct: 399 YYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQI 440

Length = 542

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 81.3 bits (202), Expect = 6e-18
 Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 32/210 (15%)

Query: 39  GSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSG 95
           G+ ++L       D E     + +HR+T + +VP L+ AL      +   L SL+LV  G
Sbjct: 159 GATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDAL--EPAALPSLRLVIVG 216

Query: 96  AAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM-----ENSFAGSRNIGSAGALAPG 150
              L  EL+    +  P A ++  YG TET+   T      ++   GS  IG        
Sbjct: 217 GEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRP---IAN 273

Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMR----ATKLTIDKKGWV------------H 194
               ++  +  +P+P    GE+++ G  + R      +LT ++  +V             
Sbjct: 274 TRVYVLD-EDLRPVPVGVPGELYIGGAGVARGYLNRPELTAER--FVPDPFGGPGERLYR 330

Query: 195 TGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           TGDL  +  DG L  + R  + +K +G+++
Sbjct: 331 TGDLARWLPDGNLEFLGRADDQVKIRGYRI 360

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 81.0 bits (200), Expect = 1e-17
 Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 43/245 (17%)

Query: 13  DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V+L   PL H+ GL+  +    L  G+C +L+ KFD +  L+AI++H VT +  VP +
Sbjct: 213 DDVYLHTAPLCHIGGLSSALA--MLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAM 270

Query: 72  ILALAKHGLVKKFDLS--SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGI 128
           +  L              S++ + +G   L   L+ +  K  P+A +   YG+TE  S +
Sbjct: 271 MADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSL 330

Query: 129 ATM-------------------ENSFAGSRNIGS-AGALAPGVEALIVSVDTQKPLPPNQ 168
             M                     S +  +  G   G  AP VE  I           ++
Sbjct: 331 TFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKI------GLDESSR 384

Query: 169 LGEIWLRGPNMM---------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKY 219
           +G I  RGP++M          A+ L+ D  GW+ TGD+G+ D  G L+++ R  + IK 
Sbjct: 385 VGRILTRGPHVMLGYWGQNSETASVLSND--GWLDTGDIGWIDKAGNLWLIGRSNDRIKT 442

Query: 220 KGFQV 224
            G  V
Sbjct: 443 GGENV 447

Length = 563

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 27/147 (18%)

Query: 89  LKLVGSGAAPLGKELME---ECAKNVPSATVIQGYGLTETSG-IATMENSFAGSRNIGSA 144
           ++ + SGA+PL  ++ME    C        V++GYG+TETS  I+ M+    G    G  
Sbjct: 378 VRFMSSGASPLSPDVMEFLRICF----GGRVLEGYGMTETSCVISGMDE---GDNLSGHV 430

Query: 145 GALAPGVEALIVSV------DTQKPLPPNQLGEIWLRGPNMMRA-------TKLTIDKKG 191
           G+  P  E  +V V         +P P    GEI +RGP + +        T+  ID+ G
Sbjct: 431 GSPNPACEVKLVDVPEMNYTSEDQPYPR---GEICVRGPIIFKGYYKDEVQTREVIDEDG 487

Query: 192 WVHTGDLGYFDGDGQLYVVDRIKELIK 218
           W+HTGD+G +   G+L ++DR K + K
Sbjct: 488 WLHTGDIGLWLPGGRLKIIDRKKNIFK 514

Length = 651

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 28/201 (13%)

Query: 45  MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELM 104
             + D  +    I +H VT + + P L+  LA         L+SL+LV  G   L   L+
Sbjct: 196 EERDDAALLAALIAEHPVTVLNLTPSLLALLAAAL---PPALASLRLVILGGEALTPALV 252

Query: 105 EECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGALAPGVEALIVSV 158
           +      P A +I  YG TET+  +T       +        IG            ++  
Sbjct: 253 DRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRP---LANTRLYVLD- 308

Query: 159 DTQKPLPPNQLGEIWLRGPNMMR---------ATK------LTIDKKGWVHTGDLGYFDG 203
           D  +P+P   +GE+++ GP + R         A +         D      TGDL  +  
Sbjct: 309 DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLP 368

Query: 204 DGQLYVVDRIKELIKYKGFQV 224
           DG L  + RI + +K +G+++
Sbjct: 369 DGNLEFLGRIDDQVKIRGYRI 389

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 52/245 (21%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRA-------IEKHRVTHIWVVPPLI 72
           LPLFH  G+       +  G+ ++ +   D   FLR        I K+R T +   P   
Sbjct: 201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMD---FLRDPLLWAELISKYRGT-MTAAPNFA 256

Query: 73  LALAKHGLVKK-----FDLSSLKLVGSGAAPLGKELMEECAK-----NVPSATVIQGYGL 122
            AL    L ++     FDLSSL+   +GA P+    +E+         +    ++  YG+
Sbjct: 257 YALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGM 316

Query: 123 TETSGIATMENSFAG------------------------SRNIGSAGALAPGVEALIVSV 158
            E +   +     AG                        +R + + G   PG+E  +V  
Sbjct: 317 AEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDE 376

Query: 159 DTQKPLPPNQLGEIWLRGPNM------MRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 212
           D Q  LPP  +G I LRG ++      M       D  GW+ TGDLGY   +G++ V  R
Sbjct: 377 DGQ-VLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGR 435

Query: 213 IKELI 217
           +K++I
Sbjct: 436 VKDVI 440

Length = 545

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 63/252 (25%), Positives = 97/252 (38%), Gaps = 56/252 (22%)

Query: 15  VFLCVLPLFHVFGL------AVIT-CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWV 67
           V L  +PL HV G+       V   C Q+   +  IL    D   +L  I+++RVT  W 
Sbjct: 210 VSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILA---DPLRWLDLIDRYRVTITWA 266

Query: 68  VPP-----LILALAKHGLVKKFDLSSLKLVGSGA----APLGKELMEECAKNVPSATVIQ 118
             P     L+    +    + +DLSSL+ + +      A   +  +E  A     A  I+
Sbjct: 267 --PNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIR 324

Query: 119 -GYGLTETSGIATMENSFAGSRNIG-------------------------SAGALAPGVE 152
             +G++ET    T    F    + G                           G   PGV 
Sbjct: 325 PAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVA 384

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDG 205
             IV  +    LP  ++G + +RGP +         A      + GW  TGDLG+   DG
Sbjct: 385 IRIVD-EDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DG 442

Query: 206 QLYVVDRIKELI 217
           +L +  R K++I
Sbjct: 443 RLTITGREKDMI 454

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 78.6 bits (194), Expect = 5e-17
 Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 24/205 (11%)

Query: 42  IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL 99
           ++   +FD E +   +E+ +VT  +  P  +  L + G  L  ++DLSSL+ + S   PL
Sbjct: 160 VVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPL 219

Query: 100 GKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD 159
             E++    + V    +   +  TET  I          +  GS G   PG+EA ++  D
Sbjct: 220 NPEVVV-WGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKP-GSMGRPLPGIEAAVIERD 277

Query: 160 ---TQKPLPPNQLGEIWLRG--PNMMRA--------TKLTIDKKGWVHTGDLGYFDGDGQ 206
                    P Q+GE+ L+   P+M R             +D  GW  TGDL Y D DG 
Sbjct: 278 GDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVD--GWYLTGDLAYRDEDGY 335

Query: 207 LYVVDRIKELIKYKG-----FQVTS 226
            + V R  ++IK  G     F+V S
Sbjct: 336 FWFVGRADDVIKTAGHLVGPFEVES 360

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 78.5 bits (194), Expect = 5e-17
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 21/205 (10%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
                G+ + +    +FD E  L  +E++ VT  +  PP     L +  L   +D S L+
Sbjct: 143 APWLLGAAVFVYHGRRFDAERTLELLERYGVT-TFCAPPTAYRMLLQQDL-SSYDFSHLR 200

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG 150
            V S   PL  E+++   +      +  GYG TET     + N        GS G  APG
Sbjct: 201 HVVSAGEPLNPEVID-WWRAATGLPIRDGYGQTET--GLLVANFPGMEVKPGSMGRPAPG 257

Query: 151 VEALIVSVDTQKPLPPNQLGEIWL----RGPNMMR-------ATKLTIDKKGWVHTGDLG 199
               I+  +  + LPP + G+I +    R P + R        T+ TI +  W  TGD  
Sbjct: 258 YRVAIIDDEGNE-LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRA 315

Query: 200 YFDGDGQLYVVDRIKELIKYKGFQV 224
             D DG  + V R  ++IK  G+++
Sbjct: 316 IKDEDGYFWFVGRADDVIKSSGYRI 340

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 78.6 bits (194), Expect = 6e-17
 Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 41/250 (16%)

Query: 8   TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-----AKFDLEMFLRAIEKHRV 62
             G+ D   L   P F +FG A      L   + I  M     A  D     +AI +   
Sbjct: 124 REGDRD---LAAFPPFALFGPA------LGVTTVIPAMDPTAPAALDPAKLAQAIREIGA 174

Query: 63  THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV-PSATVIQGYG 121
           + ++  P L+  +A++       L SL+ V S  AP+  +L+     N+ P A +   YG
Sbjct: 175 SCVFGSPALLKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYG 234

Query: 122 LTETSGIATMENS--FAGSRNIGSAGA------LAPGVEALIV--------SVDTQKPLP 165
            TE   +A++E     A S     AGA        PG++  I+        S D    LP
Sbjct: 235 ATEALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELP 294

Query: 166 PNQLGEIWLRGPNMMRA----------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 215
           P ++GEI + GP++ R            K++   + W   GDLGYFD  G+L+   R   
Sbjct: 295 PGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAH 354

Query: 216 LIKYKGFQVT 225
            ++  G  + 
Sbjct: 355 RVETAGGTLF 364

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 22/218 (10%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LPLFHV GL +   G L+ G+  +   +   E + +A+ +   T  + VP +   +A   
Sbjct: 176 LPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALSE-GGTLYFGVPTVWSRIAADP 234

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATMENSFA 136
              +  L   +L+ SG+A L   + +  A      T    ++ YG+TET  + T+     
Sbjct: 235 EAAR-ALRGARLLVSGSAALPVPVFDRLAA----LTGHRPVERYGMTET--LITLSTRAD 287

Query: 137 GSRNIGSAGALAPGVEALIVSVDTQKPLP--PNQLGEIWLRGPNMM-------RATKLTI 187
           G R  G  G    GVE  +V  +   P+P     +GE+ +RGP +         AT    
Sbjct: 288 GERRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAF 346

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIK-ELIKYKGFQV 224
              GW  TGD+   D DG   +V R   +LIK  G+++
Sbjct: 347 TADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRI 384

Length = 471

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 78.0 bits (193), Expect = 8e-17
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 29/192 (15%)

Query: 50  LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
           LE     + + RVT   + P    +L    L+   D+ SL+ +  G     + L++  +K
Sbjct: 177 LEDLAEFLNRLRVTVAHLTP----SLL--ALLDPEDVPSLRTLILGGEACPQALVDRWSK 230

Query: 110 NVPSATVIQGYGLTETSGIATM-ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ 168
                 ++  YG TE +  AT    +     NIG      P     ++  D +  +P   
Sbjct: 231 PR---RLLNTYGPTEATVTATASRLTPGKPVNIGRP---LPNYTCWVLDPDLEPLVPIGA 284

Query: 169 LGEIWLRGPNMMR---------ATKLTIDKKGWV-------HTGDLGYFDGDGQLYVVDR 212
           +GE+ + GP + R         A K   D             TGDL  +  DG L  + R
Sbjct: 285 VGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGR 344

Query: 213 IKELIKYKGFQV 224
             + +K +G ++
Sbjct: 345 KDDQVKIRGQRI 356

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 24/189 (12%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAK---HG-LVKKFDLSSLKLVGSGAAPLGKELME--E 106
           + R IE++ V  ++  P  I A+ K    G  +KK+DLSSL+ +      L    +E  E
Sbjct: 307 YWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIE 366

Query: 107 CAKNVPSATVIQGYGLTETSG--IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164
               VP   VI  +  TET     A            GS G   PG +  ++  +T + L
Sbjct: 367 KTLGVP---VIDHWWQTETGWPITANCVGLELLPIKPGSPGKPVPGYDVQVLD-ETGEEL 422

Query: 165 PPNQLGEIWLRGP-----------NMMRATKLTIDK-KGWVHTGDLGYFDGDGQLYVVDR 212
            P +LG I ++ P           +  R  KL ++K  G+  TGD GY D DG L+V+ R
Sbjct: 423 GPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGR 482

Query: 213 IKELIKYKG 221
             ++I   G
Sbjct: 483 TDDVINVAG 491

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 59/258 (22%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWV 67
           VFL  +PL H  GL          G    LM      +F+R          +HR T I  
Sbjct: 149 VFLSWMPLTHDMGLIGFHLTPTALGINQYLMPT---RLFIRRPLLWLDKASQHRAT-ILS 204

Query: 68  VP----PLILALAKHGLVKKFDLSSLKLVGSGAAP----LGKELMEECAK-NVPSATVIQ 118
            P      +L   K   +  +DLSS++L+ +GA P    L +E +E+ A   +    +  
Sbjct: 205 SPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYP 264

Query: 119 GYGLTETSGIAT----------------------------MENSFAGSRNIGSAGALAPG 150
            YGL E +   +                             +NS   + +    G+   G
Sbjct: 265 VYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNS--DAISFVEVGSPIDG 322

Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKLTIDKKGWVHTGDLGYFDG 203
            E  IV  D  + LP   +G I ++G N+         ATK +I   GW+ TGDLG+   
Sbjct: 323 CEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR- 380

Query: 204 DGQLYVVDRIKELIKYKG 221
           +G+L +  R K++I   G
Sbjct: 381 NGRLVITGRAKDIIIVNG 398

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 26/225 (11%)

Query: 6   QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVT 63
           Q  AG     FL   PL H  G  +     L  G  ++L+   KFD +   R +EKHRV 
Sbjct: 51  QVAAGGAGTRFLPACPLMHGAGQWL-ALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVN 109

Query: 64  HIWVV-----PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
            + +V      PL+ AL   G   ++DLSSL+ + S  A    E+ +   + +P+  ++ 
Sbjct: 110 TLVIVGDAFARPLLEALEAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVD 166

Query: 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP--NQLGEIWLRG 176
             G +ET G  +   S + +    + G    G + +++  D    +PP   ++G I   G
Sbjct: 167 ALGASETGGGGS---SVSRAGGASATGKFELGPDTVVLDEDGS-EVPPGSGEVGWIARGG 222

Query: 177 ---------PNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 212
                    P     T   ID   +   GD    + DG + ++ R
Sbjct: 223 RVPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGR 267

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 77.5 bits (191), Expect = 2e-16
 Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 24/222 (10%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCII-----LMAKFDLEMFLRAIEKHRVTHIWV 67
           D V +  LP FH +G    T   L  G  ++     L  K  +EM    I++ +VT +  
Sbjct: 224 DDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEM----IDEAKVTFLGS 279

Query: 68  VPPL---ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE 124
            P     IL  AK    ++  L SL+ V  G       L +E  K  P   + QGYG TE
Sbjct: 280 TPVFFDYILKTAKK---QESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE 336

Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-- 182
            S + T+ N+    ++    G    G++ LIVS +T+ P+   + G +  RG ++     
Sbjct: 337 CSPVITI-NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYL 395

Query: 183 ------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
                   + +  + W  TGDLGY D  G+L++  R+   +K
Sbjct: 396 GEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVK 437

Length = 539

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 75.9 bits (187), Expect = 5e-16
 Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 7/210 (3%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V L   P+ H  G        +  G+  +L   +D       I    VT      P +
Sbjct: 238 DDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFL 297

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +        +SSL+      AP+   L+E  A+    A ++  +G+TE   +   +
Sbjct: 298 TDLTRAVKESGRPVSSLRTFLCAGAPIPGALVER-ARAALGAKIVSAWGMTENGAVTLTK 356

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-----RATKLTI 187
                 R   + G   PGVE  +V  D   PLP  Q+G + +RG +       R      
Sbjct: 357 LDDPDERASTTDGCPLPGVEVRVVDADGA-PLPAGQIGRLQVRGCSNFGGYLKRPQLNGT 415

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           D  GW  TGDL   D DG + +  R K++I
Sbjct: 416 DADGWFDTGDLARIDADGYIRISGRSKDVI 445

Length = 547

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 75.6 bits (186), Expect = 7e-16
 Identities = 54/142 (38%), Positives = 72/142 (50%), Gaps = 18/142 (12%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM----ENSFAGSRNIGSA 144
           L+L+ SG APL  E+ EE  +    A V+QGYGLTET G  T+    E        +G+ 
Sbjct: 385 LRLLISGGAPLSTEI-EEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCM-----LGTV 438

Query: 145 GALAPGVEALIVSVDTQ--KPLPPNQLGEIWLRGPNMM----RATKLTID--KKGWVHTG 196
           GA A   E  +  V      PL     GEI +RG  +     +  +LT +  K GW HTG
Sbjct: 439 GAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTG 498

Query: 197 DLGYFDGDGQLYVVDRIKELIK 218
           D+G    +G L ++DR K LIK
Sbjct: 499 DIGEILPNGVLKIIDRKKNLIK 520

Length = 660

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 75.6 bits (186), Expect = 7e-16
 Identities = 65/232 (28%), Positives = 94/232 (40%), Gaps = 35/232 (15%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV---P 69
           D V    LPLFH   L       L  G+  +L  +F    F  A+ +H  T  +++    
Sbjct: 221 DDVLYTTLPLFHTNALNAFFQALLA-GATYVLEPRFSASGFWPAVRRHGATVTYLLGAMV 279

Query: 70  PLILALAK------HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT 123
            ++L+         H +        + L     A L     E          ++ GYG T
Sbjct: 280 SILLSQPARESDRAHRV-------RVALGPGVPAALHAAFRERFG-----VDLLDGYGST 327

Query: 124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLR-------- 175
           ET+ +  +     GS+  GS G LAPG EA +V    Q  LP  + GE+ LR        
Sbjct: 328 ETNFVIAVT---HGSQRPGSMGRLAPGFEARVVDEHDQ-ELPDGEPGELLLRADEPFAFA 383

Query: 176 -GPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
            G   M    +   +  W HTGD    D DG    VDRIK+ I+ +G  ++S
Sbjct: 384 TGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISS 435

Length = 542

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 24/235 (10%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRV 62
           + Q+T       +LC LP  H + L+     G    G C++L            IE+H+V
Sbjct: 220 LTQQT------RYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKV 273

Query: 63  THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA---TVIQG 119
           T   +VPP +    +     + DLSSLKL+  G    G +     A+ VP+     + Q 
Sbjct: 274 TVTALVPPAVALWMQAASKSRADLSSLKLLQVG----GAKFSAAAARRVPAVFGCQLQQV 329

Query: 120 YGLTETSGIATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 178
           +G+ E     T  +  A      + G  ++P  E  +V  D   P+ P + G +  RGP 
Sbjct: 330 FGMAEGLVNYTRLDDPA-EIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPY 387

Query: 179 MMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
             R             D +G+ +TGDL     +G + VV R K+ I   G ++ +
Sbjct: 388 TFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAA 442

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 74.0 bits (182), Expect = 2e-15
 Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 23/215 (10%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKG---SCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70
             + V P+FH +G +     QL      +C I+   +FD E  L  I++HR T + VVP 
Sbjct: 239 PTVIVAPMFHAWGFS-----QLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPV 293

Query: 71  L---ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG 127
           +   I+ L       ++   SL+   +  + +  +++           +   Y  TE   
Sbjct: 294 MFDRIMDLPAEVR-NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDV-IYNNYNATEAGM 351

Query: 128 IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-----A 182
           IAT            +AG  A G E  I+  D ++ +P  ++G I++R           +
Sbjct: 352 IAT-ATPADLRAAPDTAGRPAEGTEIRILDQDFRE-VPTGEVGTIFVRNDTQFDGYTSGS 409

Query: 183 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           TK   D  G++ +GD+GY D +G+L+VV R  E+I
Sbjct: 410 TKDFHD--GFMASGDVGYLDENGRLFVVGRDDEMI 442

Length = 537

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 67/248 (27%), Positives = 102/248 (41%), Gaps = 50/248 (20%)

Query: 7   ETAGELDYVFLCVLPLFHV-----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHR 61
           + A   D V+L V+P FH+       +A  + G     +  +L+ K+    F   + K+R
Sbjct: 208 QCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAG-----ATFVLLEKYSARAFWGQVCKYR 262

Query: 62  VTHIWVVPPLILALA---------KHGLVKKF---DLSSLKLVGSGAAPLGKELMEECAK 109
            T    +P +I  L          +H L +     +LS  +          K+  EE   
Sbjct: 263 ATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQE----------KDAFEERFG 312

Query: 110 NVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ 168
                 ++  YG+TET  GI    +     R   S G      EA I     + PLP  +
Sbjct: 313 ----VRLLTSYGMTETIVGIIG--DRPGDKRRWPSIGRPGFCYEAEIRDDHNR-PLPAGE 365

Query: 169 LGEIWLRG-P---------NMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
           +GEI ++G P            +AT   ++  GW+HTGD GY D +G  Y VDR   +IK
Sbjct: 366 IGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIK 425

Query: 219 YKGFQVTS 226
             G  V+ 
Sbjct: 426 RGGENVSC 433

Length = 517

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 73.2 bits (180), Expect = 5e-15
 Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 20/205 (9%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
           GQ   G+ + +    KFD +  L  IEK+ VT  +  PP I        + K+DLSSL+ 
Sbjct: 247 GQWIAGAAVFVYDYDKFDPKNLLEKIEKYGVT-TFCAPPTIYRFLIKEDLSKYDLSSLRY 305

Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS-GIATMENSFAGSRNIGSAGALAPG 150
             +   PL  E+     K      +++G+G TET+  IAT           GS G  +PG
Sbjct: 306 CTTAGEPLNPEVFNT-FKEKTGIKLMEGFGQTETTLTIATFPWMEPKP---GSMGKPSPG 361

Query: 151 VEALIVSVDTQKPLPPNQLGEIWLR----GPNMM-----RATKLTID--KKGWVHTGDLG 199
            +  I+  D  K     + GEI +R     P  +     R  + T +    G+ HTGD  
Sbjct: 362 YDIDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTA 420

Query: 200 YFDGDGQLYVVDRIKELIKYKGFQV 224
           + D DG L+ V R  +LIK  G+++
Sbjct: 421 WMDEDGYLWFVGRADDLIKSSGYRI 445

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 73.0 bits (179), Expect = 7e-15
 Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 24/145 (16%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENSFAGSRNIGSAGA 146
           ++L+ SGAAPL + + EE  +    + + QGYGLTE+ G    ++ N F+    +G+ G 
Sbjct: 385 VRLLLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFS---MVGTVGV 440

Query: 147 LAPGVEALIVSV-----DTQKPLPPNQLGEIWLRGPNMM----RATKLT----IDKKGWV 193
               +EA + SV     D    +P    GEI LRG  +     +   LT    ID  GW 
Sbjct: 441 PMTTIEARLESVPEMGYDALSDVPR---GEICLRGNTLFSGYHKRQDLTEEVLID--GWF 495

Query: 194 HTGDLGYFDGDGQLYVVDRIKELIK 218
           HTGD+G +  +G + ++DR K + K
Sbjct: 496 HTGDIGEWQPNGAMKIIDRKKNIFK 520

Length = 660

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 72.5 bits (178), Expect = 8e-15
 Identities = 64/220 (29%), Positives = 99/220 (45%), Gaps = 18/220 (8%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D VF+   PL   FGL  +    L+ G+  +L+ +    + L+AI++HR T ++  P   
Sbjct: 189 DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAY 248

Query: 73  LALAKHGLVKKFDLSSL-KLVGSGA---APLGKELMEECAKNVPSATVIQGYGLTETSGI 128
            A+     VK FD+SSL K V +G    A + ++  E     +     I G G TE   I
Sbjct: 249 RAML--IKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLKI-----IDGIGATEMLHI 301

Query: 129 ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN----MMRATK 184
               N    +   G+ G   PG EA IV  D    +P  + G + +RGP     +    +
Sbjct: 302 FISAN--EENAKPGATGKPVPGYEARIVD-DQGNEVPRGEAGRLAVRGPTGCRYLDDERQ 358

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
               + GW  TGD+   D DG  + V R  ++I   G+ +
Sbjct: 359 QEYVRDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNI 398

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 19/191 (9%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG-----LVKKFDLSSLKLVGSGAAPLGKELMEEC 107
               IEKH+VTH   +P  I  L K       +  K+DLS+LK +  G   + +E + E 
Sbjct: 341 LWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVI-EESIPEY 399

Query: 108 AKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167
            +N       +GYG TE  GI  +      +    + G  +  ++  I+S D  K L  N
Sbjct: 400 IENKLKIKSSRGYGQTE-IGITYLYCYGHINIPYNATGVPSIFIKPSILSEDG-KELNVN 457

Query: 168 QLGEIWLRGP-----------NMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKEL 216
           ++GE+  + P           N  +  +L     G+ ++GDLG+ D +G   +V R  + 
Sbjct: 458 EIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQ 517

Query: 217 IKYKGFQVTSN 227
           IK  G +V  N
Sbjct: 518 IKISGNKVQLN 528

Length = 647

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 17/220 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
                  LF  +GL       L  G+  +L+      E  L  + +HR T ++ VP L  
Sbjct: 135 RIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYR 194

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIATM 131
           AL + G        S++L  S    L   L E  A+   +    ++ G G TE   I  +
Sbjct: 195 ALLESGAGSAPLFRSVRLCVSAGEALPAGLAERWAEATGIE---ILDGIGSTEVLHI-FI 250

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP-------NMMRATK 184
            N    +R  G+ G   PG EA +V  ++ + +P   +G++W+RGP       N+   T+
Sbjct: 251 SNRPGAAR-PGTTGRPVPGYEARLVD-ESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQ 308

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            T+ + GW+ TGD    D DG      R  ++IK  G  V
Sbjct: 309 RTL-RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWV 347

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 52/213 (24%), Positives = 80/213 (37%), Gaps = 29/213 (13%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVV--- 68
                 PL H  G  A      L  G  ++L    +FD +   R IE+ +V  I +V   
Sbjct: 221 RRFPAPPLMHGAGQWAAFAA--LFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDA 278

Query: 69  --PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126
              PL+ AL   G    +DLSSL  + SG A     + E   + +P+  +    G +ET 
Sbjct: 279 MARPLLDALEARG---PYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETG 335

Query: 127 GIATMENSFAGSRNIGSAGA-LAPGVEALIVSVDTQKPLPP--NQLGEIWLRG------- 176
              +          + + G     G   +++  D   P+ P   ++G I  RG       
Sbjct: 336 FGGS---GTVAKGAVHTGGPRFTIGPRTVVLDEDGN-PVEPGSGEIGWIARRGHIPLGYY 391

Query: 177 --PNMMRATKLTIDKKGWVHTGDLGYFDGDGQL 207
             P     T  TID   +   GD    + DG +
Sbjct: 392 KDPEKTAETFPTIDGVRYAIPGDRARVEADGTI 424

Length = 533

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 38/241 (15%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
           V    LPL+H   L V     L  G+ + L  KF    F   + ++  T    V  L   
Sbjct: 124 VLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRY 183

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +L   +    +   L   K++G+G  P   ++ +E  +      +++ YG TE  G    
Sbjct: 184 LLNQPEKPDDRDHPLR--KIIGNGLRP---DIWDEFKERFGVPRIVEFYGSTE--GNVGF 236

Query: 132 ENSFAGSRNIGSAGALAPGVEALI-VSVDTQKPL----------PPNQLGEIWLRG---- 176
            N F      G+ G L P   A++   V+T++P+          PP ++G +        
Sbjct: 237 INLF---NKPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRN 293

Query: 177 -------PNMMRATKLTIDKK---GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
                          L    K    + +TGDL   DG G  Y VDR+ +  ++KG  V++
Sbjct: 294 PFDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVST 353

Query: 227 N 227
            
Sbjct: 354 T 354

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 13/211 (6%)

Query: 22  LFHVFGLAVITCGQLQKGSCIILMAKFDL-EMFLRAIEKHRVTHIWVVPPLILALAKHGL 80
           LF  +GL       L  G+  +LM +    +     IE+++ T  + VP L  A+     
Sbjct: 212 LFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPE 271

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRN 140
             + DLSSL+L  S    L  E+     K +    ++ G G TE   I    ++  G+  
Sbjct: 272 KPERDLSSLRLCVSAGEALPAEIGYRW-KELFGLEILDGIGSTEMLHIFL--SNRPGAVK 328

Query: 141 IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWV 193
            G++G   PG E  +V  D +  +   ++GE+W+RG +           T+ T     W 
Sbjct: 329 YGTSGKPVPGYEVKLVDEDGE-EVADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWT 386

Query: 194 HTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            TGD  Y D DG  +   R  +++K  G  V
Sbjct: 387 RTGDKYYRDEDGYYWYCGRSDDMLKVSGIWV 417

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 45/174 (25%)

Query: 84  FDLSSLKLVGSGAAPLGKELMEECAKNVPSA-----TVIQGYGLTETSGIATMENSFAG- 137
            DLS  ++ G GA  +  +++ + A+    A       +  YGL E    AT+  SF+  
Sbjct: 296 LDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAE----ATLAVSFSPL 351

Query: 138 -----------SRNIGSAGALAPGVEAL---------------IVSV--DTQKPLPPNQL 169
                       R      A+APG E                  + +  +   PLP   +
Sbjct: 352 GSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVV 411

Query: 170 GEIWLRGPNMMR------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           G I +RGP++M        ++  +   GW+ TGDLGY   DG LY+  R K+LI
Sbjct: 412 GHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKDLI 464

Length = 579

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 66.4 bits (162), Expect = 8e-13
 Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 21/215 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +FD    L+ IE+ RVT ++  P  + A
Sbjct: 197 VVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDA 256

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           LA         L SL+ V    A +   ++E   +++P   V   YG TE      M + 
Sbjct: 257 LAAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKV-NIYGTTEAMNSLYMRDP 315

Query: 135 FAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEI--------WLRGPNMMRA 182
             G+        + PG   E  IV +     + LP  + GE+        +    N  +A
Sbjct: 316 RTGTE-------MRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQA 368

Query: 183 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           T   + + GW  T D+   D  G + ++ R+ ++I
Sbjct: 369 TAEKL-QDGWYRTSDVAVVDPSGTVRILGRVDDMI 402

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 63.8 bits (155), Expect = 8e-12
 Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 7/208 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L   P+ H  G        L   +  +L   ++       I +  VT      P +  
Sbjct: 238 VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTD 297

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +        + SL       AP+   L+E  A  +  A ++  +G+TE   +   E  
Sbjct: 298 LCRAVKESGAPVPSLFTFLCAGAPIPGILVER-AWELLGALIVSAWGMTENGAVTVTEPD 356

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN-----MMRATKLTIDK 189
            A  +   + G   PGVE  ++  +  K L   + G + +RG +     + R    + D 
Sbjct: 357 DALEKASTTDGRPLPGVEVKVIDANGAK-LSQGETGRLLVRGCSNFGGYLKRPHLNSTDA 415

Query: 190 KGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           +GW  TGDL + D +G + +  R K++I
Sbjct: 416 EGWFDTGDLAFQDAEGYIRINGRSKDVI 443

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 63.8 bits (156), Expect = 8e-12
 Identities = 58/194 (29%), Positives = 80/194 (41%), Gaps = 35/194 (18%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
           F   IEKH+VT  +  P  I AL + G   VKK DLSSL+L+GS   P+  E      K 
Sbjct: 322 FWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKV 381

Query: 111 V--PSATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPP 166
           V      ++  +  TET GI  M     G+     GSA     G+E  +V  +   P+  
Sbjct: 382 VGKERCPIVDTWWQTETGGI--MITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEG 438

Query: 167 NQLGEI------WLRGPNMMRATKLTI-------------DKKGWVHTGDLGYFDGDGQL 207
              G        W   P M+R    TI                G+  TGD    D DG +
Sbjct: 439 PGEGGYLVIKQPW---PGMLR----TIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYI 491

Query: 208 YVVDRIKELIKYKG 221
           ++  R+ ++I   G
Sbjct: 492 WITGRVDDVINVSG 505

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 24/228 (10%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L VLPL   +G   +T      G+ ++L         L+A+EKH +T +  VPPL   LA
Sbjct: 208 LAVLPLSFDYGFNQLTTAFYV-GATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLA 266

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA 136
           +     +    SL+ + +    + +  +      +P+A +   YGLTE      +     
Sbjct: 267 QLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEV 325

Query: 137 GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG-------------------P 177
             R   S G   P  E L++  D  +  P  + GE+  RG                   P
Sbjct: 326 DRRP-DSIGKAIPNAEVLVLREDGSECAP-GEEGELVHRGALVAMGYWNDPEKTAERFRP 383

Query: 178 NMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 225
                 +L + +   V +GD    D +G LY V R  E+IK  G++V+
Sbjct: 384 LPPFPGELHLPELA-VWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVS 430

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 17/189 (8%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEE 106
           D    L  +E   +T + +VP L+  L    L          L+ + SG   L   L++ 
Sbjct: 445 DPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQR 504

Query: 107 CAKNVPSA-TVIQGYGLTETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQK 162
             +    A  ++  YG TE +  A              IG         +  I+     +
Sbjct: 505 LLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRP---VANTQLYILD-QGLR 560

Query: 163 PLPPNQLGEIWLRGPNM----MRATKLTIDKK---GWVHTGDLGYFDGDGQLYVVDRIKE 215
           PLP    GE+++ G  +    +    LT ++        TGDL     DG L  + R   
Sbjct: 561 PLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDS 620

Query: 216 LIKYKGFQV 224
            +K +GF++
Sbjct: 621 QVKIRGFRI 629

Length = 642

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 66/232 (28%), Positives = 94/232 (40%), Gaps = 43/232 (18%)

Query: 15  VFLCVLPLFHVFG------LAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH  G      +A             + + K D ++    I +H VTH    
Sbjct: 225 VYLWTLPMFHCNGWCFPWTVAAR-------AGTNVCLRKVDPKLIFDLIREHGVTHYCGA 277

Query: 69  PPLILAL--AKHGLVKKFDLSSLKLVGSGAAPLGK--ELMEECAKNVPSATVIQGYGLTE 124
           P ++ AL  A        D     +V  GAAP       MEE   ++        YGLTE
Sbjct: 278 PIVLSALINAPAEWRAGIDHPVHAMVA-GAAPPAAVIAKMEEIGFDL-----THVYGLTE 331

Query: 125 TSGIATMENSFAG---------SRNIGSAGALAPGVEALIV-SVDTQKPLPPN--QLGEI 172
           T G AT+               ++     G   P  E + V   DT +P+P +   +GEI
Sbjct: 332 TYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEI 391

Query: 173 WLRGPNMM-------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
             RG  +M       +AT+      GW HTGDL     DG + + DR K++I
Sbjct: 392 MFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDII 442

Length = 545

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 35/237 (14%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V+L  LP+FH  G    T G   +G   + M         + IE H VTH+  VP +   
Sbjct: 229 VYLWTLPMFHCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNI 287

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA----- 129
           L K   +     S    V +G +P    L+++  +      V+  YGLTE +G       
Sbjct: 288 LLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR--LGFQVMHAYGLTEATGPVLFCEW 345

Query: 130 -----------TME-NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLR 175
                       ME  +  G   +G A       +  + + +TQ+ +P +   +GEI ++
Sbjct: 346 QDEWNRLPENQQMELKARQGVSILGLA-------DVDVKNKETQESVPRDGKTMGEIVIK 398

Query: 176 GPNMMRA----TKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
           G ++M+      K T +  K GW++TGD+G    DG + + DR K++I   G  ++S
Sbjct: 399 GSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISS 455

Length = 579

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 60.4 bits (146), Expect = 1e-10
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 23/160 (14%)

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--I 128
           L+    K GL       +++++ SGAAPL   + E   + V    V+QGYGLTE+     
Sbjct: 375 LVFNKVKQGLG-----GNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTF 428

Query: 129 ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLRGPNMMRA---- 182
            ++ +       +G+ G   P V+  + SV   +   L     GEI +RG  +       
Sbjct: 429 VSLPDELD---MLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKR 485

Query: 183 ----TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
                ++ ID  GW+HTGD+G +  +G + ++DR K + K
Sbjct: 486 EDLTKEVLID--GWLHTGDVGEWQPNGSMKIIDRKKNIFK 523

Length = 666

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 27/100 (27%)

Query: 143 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM----------MRAT---KL---- 185
           SAG +     A+IV  +T   LP  Q+GEIWL G N+            AT    L    
Sbjct: 392 SAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRL 451

Query: 186 -------TIDKKGWVHTGDLG-YFDGDGQLYVVDRIKELI 217
                    D   WV TGD G YFDG+  LY+  R+K+L+
Sbjct: 452 SESHAEGAPDDALWVRTGDYGVYFDGE--LYITGRVKDLV 489

Length = 631

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 74/255 (29%), Positives = 116/255 (45%), Gaps = 51/255 (20%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQ---KGSCIILMA-KFDLEMFLR---AIEKHRVTHI 65
           D V +  LPL+H  GL     G LQ    G   +LM+  + LE  LR   AI ++  T I
Sbjct: 209 DDVIVSWLPLYHDMGL---IGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGT-I 264

Query: 66  WVVPPLILALAKH----GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA-----TV 116
              P     L         +++ DLS  ++  SG+ P+ ++ +E  A+   +      + 
Sbjct: 265 SGGPDFAYRLCSERVSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSF 324

Query: 117 IQGYGLTETS----------GIATME-NSFAGSRN---------IGSAGALAPGVEALIV 156
              YGL E +          GI  +E ++ A +RN         + S G   PG   LIV
Sbjct: 325 FASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIV 384

Query: 157 SVDTQKPLPPNQLGEIWLRGPNMM-------RATKLTI---DKKGWVHTGDLGYFDGDGQ 206
              + + L  N++GEIW  GP++         A+  T    D + W+ TGDLG F  DG+
Sbjct: 385 DPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLG-FLRDGE 443

Query: 207 LYVVDRIKELIKYKG 221
           L+V  R+K+++  +G
Sbjct: 444 LFVTGRLKDMLIVRG 458

Length = 4334

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 28/186 (15%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--P 112
           +EK++VT  +  P  I  L + G    KK DLSSL+L+GS   P+  E      + +   
Sbjct: 315 VEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLRLLGSVGEPINPEAWMWYYEVIGKE 374

Query: 113 SATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLG 170
              ++  +  TET G   M     G+  +  GSA    PGVE  IV  +    +     G
Sbjct: 375 RCPIVDTWWQTETGGH--MITPLPGATPLKPGSATRPFPGVEPAIVDEEG-NEVEGGVEG 431

Query: 171 EIWLRG--PNMMRATKLTIDK-------------KGWVHTGDLGYFDGDGQLYVVDRIKE 215
            + ++   P M+R    TI                G+  TGD    D DG  +++ R+ +
Sbjct: 432 YLVIKRPWPGMLR----TIYGDHERYVKTYFSKFPGYYFTGDGARRDEDGYYWILGRVDD 487

Query: 216 LIKYKG 221
           +I   G
Sbjct: 488 VINVSG 493

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 16/194 (8%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP 98
           G  + LM KF     L  +E   ++ ++ VP ++ +L K     +   + +K++ SGA  
Sbjct: 209 GQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYK---ENRVIENKMKIISSGAK- 264

Query: 99  LGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV 158
              E  E+     P A + + YG +E S +  + +     R   S G     V+  I + 
Sbjct: 265 WEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDE-ESERRPNSVGRPFHNVQVRICNE 323

Query: 159 DTQKPLPPNQLGEIWLRGPNMMR--------ATKLTIDKKGWVHTGDLGYFDGDGQLYVV 210
              + +   ++G ++++ P                 ++  GW+   D+GY D +G +Y+V
Sbjct: 324 A-GEEVQKGEIGTVYVKSP--QFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIV 380

Query: 211 DRIKELIKYKGFQV 224
            R K +I + G  +
Sbjct: 381 GREKNMILFGGINI 394

Length = 487

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 60/188 (31%), Positives = 85/188 (45%), Gaps = 26/188 (13%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKE----LMEE 106
             R +E+H+VTH+ + P LI AL  HG   V+  DLSSL+++GS   P   E    L E 
Sbjct: 185 LWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFER 244

Query: 107 -CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165
                 P   +I   G TE SG   + N         S    +PG++A +V  D + P+ 
Sbjct: 245 VGGGRAP---IINYSGGTEISG-GILGNVPIRPIKPCSFNGPSPGMDADVVDEDGR-PVR 299

Query: 166 PNQLGEIWLRGP--NMMRA----------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI 213
             ++GE+ +R P   M R           T  +     WVH GD    D DG  Y++ R 
Sbjct: 300 G-EVGELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRS 357

Query: 214 KELIKYKG 221
            + IK  G
Sbjct: 358 DDTIKVAG 365

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 39  GSCII--LMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGA 96
           G+C+    + +FD ++ L+ + K+ +T     P +   L +  L   +   SL+   +G 
Sbjct: 242 GACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDL-TSYKFKSLRHCVTGG 300

Query: 97  APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 156
            PL  E++E+  K      + +GYG TET  I    N        GS G  +P  +  I+
Sbjct: 301 EPLNPEVLEQW-KAQTGLDLYEGYGQTETGLICA--NFKGMKIKPGSMGKASPPYDVQII 357

Query: 157 SVDTQKPLPPNQLGEIWLR-GPNMM-----------RATKLTIDKKGWVHTGDLGYFDGD 204
             D    LPP   G+I +R  P                T  TI    ++ TGD G  D D
Sbjct: 358 D-DNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMDED 415

Query: 205 GQLYVVDRIKELIKYKGFQV 224
           G  + V R  ++I   G+++
Sbjct: 416 GYFWFVGRADDVINSSGYRI 435

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 58.5 bits (141), Expect = 4e-10
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 32/229 (13%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQK-GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           ++    P++H   L    C  +   G  ++L  +FD +  L  +E++R+T   +VP + +
Sbjct: 197 IYYSSAPIYHAAPLR--WCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFV 254

Query: 74  ALAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT-------VIQGYGLTE 124
            L K    +  ++D+SSL+ V   AAP        C  +V  A        V + Y  TE
Sbjct: 255 RLLKLDADVRTRYDVSSLRAVIHAAAP--------CPVDVKHAMIDWLGPIVYEYYSSTE 306

Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM----M 180
             G+  +++    +   GS G    G   L +  D    LP  ++G ++     +    +
Sbjct: 307 AHGMTFIDSPDWLAHP-GSVGRSVLG--DLHICDDDGNELPAGRIGTVYFERDRLPFRYL 363

Query: 181 RATKLTIDKKG-----WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
              + T   +      W   GDLG  D DG LY+ DR   +I   G  +
Sbjct: 364 NDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNI 412

Length = 501

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 48/162 (29%), Positives = 66/162 (40%), Gaps = 23/162 (14%)

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNV------PSATVIQGYGLTETSGIATMENS 134
           V   DL +L++  +G  P+  +  E  A  +        A     YGL E++   T+   
Sbjct: 266 VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGA-AAPSYGLAESTCAVTVPVP 324

Query: 135 FAG-------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR 181
             G             +R     G   PG+E  I   D    +   ++GEI +RG +MM 
Sbjct: 325 GIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMS 384

Query: 182 A--TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
               +  ID   W  TGDLGY   DG L V  R KELI   G
Sbjct: 385 GYLGQAPIDPDDWFPTGDLGYL-VDGGLVVCGRAKELITVAG 425

Length = 525

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 49/212 (23%), Positives = 77/212 (36%), Gaps = 16/212 (7%)

Query: 26  FGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-VKK 83
           +GL     G L  G   + +   F  E     +E+  VT+    P     L   G     
Sbjct: 142 YGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAA 201

Query: 84  FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGS 143
                L++  S   PL  E++     N+   T+   YG TET       ++ A     GS
Sbjct: 202 RIKLKLRVASSAGEPLNPEVVRWFQANL-GVTIHDHYGQTETGMPVGNHHALAHEVRAGS 260

Query: 144 AGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-----------ATKLTIDKKGW 192
            G   PG    ++  D Q PL   + G++ +   +               T   I    W
Sbjct: 261 MGLPLPGYRIAVLDDDGQ-PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAG-RW 318

Query: 193 VHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             TGDL   D DG  + + R  ++I   G+++
Sbjct: 319 YVTGDLVERDEDGYFWFIGRADDVIISAGYRI 350

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 61/238 (25%)

Query: 13   DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
            D VF   LP+FH FGL   T G       ++L     +++FL         H  ++P LI
Sbjct: 835  DKVF-NALPVFHSFGL---TGG-------LVLPLLSGVKVFLYP----SPLHYRIIPELI 879

Query: 73   L-----------------ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT 115
                              A   H     +D  SL+ V +GA  + +E  +   +      
Sbjct: 880  YDTNATILFGTDTFLNGYARYAHP----YDFRSLRYVFAGAEKVKEETRQTWMEKF-GIR 934

Query: 116  VIQGYGLTETS-GIAT---MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP-NQLG 170
            +++GYG+TET+  IA    M N        G+ G L PG+E  +       P+P  ++ G
Sbjct: 935  ILEGYGVTETAPVIALNTPMHNKA------GTVGRLLPGIEYRLE------PVPGIDEGG 982

Query: 171  EIWLRGPNMM----RATK---LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
             +++RGPN+M    RA     L     GW  TGD+   D +G + +  R K   K  G
Sbjct: 983  RLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAG 1040

Length = 1140

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 26/104 (25%)

Query: 143 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKLTI-------- 187
           S G +A    A+IV  DT   LP  ++GEIWL G N+ R        T+ T         
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRL 462

Query: 188 ----------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 221
                     D   W+ TGDLG +  DG+LY+  RI +LI   G
Sbjct: 463 AEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDG 505

Length = 612

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 19/192 (9%)

Query: 39  GSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGA 96
           G+ +  +   +FD   +L A+EK  VT     PP +  +     + ++D+   + V +G 
Sbjct: 151 GATVFGINYPRFDARRYLGALEKFGVTTF-CAPPTVWRMFIQQDLAQYDVRLREAVSAGE 209

Query: 97  APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 156
            PL  E++E   K     T+  GYG TET+  A + NS       GS G   PG    +V
Sbjct: 210 -PLNPEVIER-VKKAWGLTIRDGYGQTETT--AMIGNSPGQKVKPGSMGRPLPGYR--VV 263

Query: 157 SVDTQKPLPPNQLGEIWLRGPNM--------MRATKLTID--KKGWVHTGDLGYFDGDGQ 206
            +D +    P   GEI L   +         M   + T    + G+  TGD  Y D DG 
Sbjct: 264 LLDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGY 323

Query: 207 LYVVDRIKELIK 218
           L+ V R  ++ K
Sbjct: 324 LWFVGRADDVFK 335

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 59/239 (24%), Positives = 87/239 (36%), Gaps = 60/239 (25%)

Query: 8   TAGELDYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT 63
           T  ++ Y     +PLFH    + G A      +  G+ + L AKF    FL  + ++  T
Sbjct: 189 TRDDVCY---VSMPLFHSNAVMAGWAPA----VASGAAVALPAKFSASGFLDDVRRYGAT 241

Query: 64  HI-WVVPPL--ILALAKHG------LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA 114
           +  +V  PL  ILA  +        L   F        G+ A+P     + E ++     
Sbjct: 242 YFNYVGKPLAYILATPERPDDADNPLRVAF--------GNEASP---RDIAEFSRRF-GC 289

Query: 115 TVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL----- 169
            V  GYG +E + I   E         GS G  APGV   I + +T       +      
Sbjct: 290 QVEDGYGSSEGAVIVVREPGTPP----GSIGRGAPGVA--IYNPETLTECAVARFDAHGA 343

Query: 170 --------GEIW-LRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 212
                   GE+    G            AT   + + G   +GDL Y D DG +Y   R
Sbjct: 344 LLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGR 401

Length = 540

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 26/231 (11%)

Query: 15  VFLCVLPLFHV--FGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPP 70
             L V+PLFH   +G+A        K    ++M  AK D       ++  +VT    VP 
Sbjct: 222 TMLPVVPLFHANSWGIAFSAPSMGTK----LVMPGAKLDGASVYELLDTEKVTFTAGVPT 277

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
           + L L ++   +   L  LK+V  G + + + +++  A       V   +G+TE S + T
Sbjct: 278 VWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIK--AFEDMGVEVRHAWGMTEMSPLGT 335

Query: 131 -------MENSFAGSR-NIGSAGALAP-GVEALIVSVDTQKPLP--PNQLGEIWLRGPNM 179
                         +R ++       P GVE  I   D  K LP      G + +RGP +
Sbjct: 336 LAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAV 394

Query: 180 ----MRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
                R     +D  G+  TGD+   D  G + + DR K++IK  G  ++S
Sbjct: 395 AAAYYRVDGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISS 445

Length = 542

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 63/233 (27%), Positives = 87/233 (37%), Gaps = 56/233 (24%)

Query: 13  DYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHI-WV 67
           D V    +PLFH    + G AV        G+ I L  KF    FL  + ++  T+  +V
Sbjct: 193 DDVCYVSMPLFHSNAVMAGWAVALAA----GASIALRRKFSASGFLPDVRRYGATYANYV 248

Query: 68  VPPLILALAKHGLVKKFDLSSLKLV-GSGAAPLGKELMEE---CAKNVPSATVIQGYGLT 123
             PL   LA        D + L++V G+  AP           C        V+ G+G T
Sbjct: 249 GKPLSYVLATPERPDDAD-NPLRIVYGNEGAPGDIARFARRFGC-------VVVDGFGST 300

Query: 124 ETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQL------------ 169
           E  G+A        + +   G+ G L PGV   IV  DT    PP +             
Sbjct: 301 EG-GVA-----ITRTPDTPPGALGPLPPGVA--IVDPDTGTECPPAEDADGRLLNADEAI 352

Query: 170 GEIW-LRGPNMMR---------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 212
           GE+    GP             A ++   + G   +GDL Y D DG  Y   R
Sbjct: 353 GELVNTAGPGGFEGYYNDPEADAERM---RGGVYWSGDLAYRDADGYAYFAGR 402

Length = 529

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 54.5 bits (131), Expect = 9e-09
 Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 48/244 (19%)

Query: 15  VFLCVLPLFH------VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH       + LA + CG        I + +   +    AI  + VTH +  
Sbjct: 238 VYLWTLPMFHCNGWCFTWTLAAL-CGT------NICLRQVTAKAIYSAIANYGVTH-FCA 289

Query: 69  PPLILALAKHGLVKKFDLSSLKLVG---SGAAPLGKELMEECAKNVPSATVIQGYGLTET 125
            P++L    +    +  L   ++V    +GAAP    L    A +     V   YGL+ET
Sbjct: 290 APVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLF---AMSEKGFRVTHTYGLSET 346

Query: 126 SGIATM-------------ENSFAGSRNIGSAGALAPGVEAL-IVSVDTQKPLPPN--QL 169
            G +T+             E +   +R     G    G+E L +V   T KP+P +   +
Sbjct: 347 YGPSTVCAWKPEWDSLPPEEQARLNARQ----GVRYIGLEGLDVVDTKTMKPVPADGKTM 402

Query: 170 GEIWLRGPNMM-------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 222
           GEI +RG  +M       +A +      GW H+GDLG    DG + + DR K++I   G 
Sbjct: 403 GEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGE 461

Query: 223 QVTS 226
            ++S
Sbjct: 462 NISS 465

Length = 567

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 26/223 (11%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LP  H+ GL  I    +  G C+      +    L  +  + V    +VP L+  L    
Sbjct: 221 LPATHIGGLWWILTCLMHGGLCV--TGGENTTSLLEILTTNAVATTCLVPTLLSKLVSEL 278

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV--IQGYGLTETSGIATMENSFAG 137
                 + SL+LVG G    G   +    + + +  V   Q YGL+ET   A    +  G
Sbjct: 279 KSANATVPSLRLVGYG----GSRAIAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDG 334

Query: 138 SRNIGSAGALA---PGVEALIVSVDTQKPLPPN-----QLGEIWLRGP-NMM-------R 181
           S     AGA+    PGV+  + + D   P  P        G +W++ P NM+       R
Sbjct: 335 SIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPER 394

Query: 182 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             ++ ID  GWV+TGDL     DG  Y+  R  E+I   G  +
Sbjct: 395 TAEVLID--GWVNTGDLLERREDGFFYIKGRSSEMIICGGVNI 435

Length = 540

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 58/235 (24%), Positives = 94/235 (40%), Gaps = 31/235 (13%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI-- 72
           V L V+P+FHV    +     L     ++   + D    +   +   VT    VP +   
Sbjct: 198 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 257

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM- 131
           LA        +       +VG  AAP     +           V QGYGLTETS +    
Sbjct: 258 LADYLESTGHRLKTLRRLVVGGSAAP---RSLIAR-FERMGVEVRQGYGLTETSPVVVQN 313

Query: 132 -----------ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPN 178
                      E        + +   L   +  L V+ +  +P+P +   LGE+ L+GP 
Sbjct: 314 FVKSHLESLSEEEKL----TLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPW 369

Query: 179 MM-------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
           +         AT+  +   G+  TGD+  +D +G + + DR+K+LIK  G  ++S
Sbjct: 370 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 424

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 36   LQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93
            L  G+ +++     +D E     I +HRVT +   P  +  LA+H      +  SL++  
Sbjct: 4757 LINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYC 4815

Query: 94   SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSA---GALAPG 150
             G   + +   +   + +    +  GYG TET+    +  +  G     +    G     
Sbjct: 4816 FGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGN 4875

Query: 151  VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA----TKLT--------IDKKG--WVHTG 196
                ++      PLP    GE++L G  + R       LT            G     TG
Sbjct: 4876 RSGYVLDGQLN-PLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTG 4934

Query: 197  DLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            DL  +  DG +  + R+   +K +GF++
Sbjct: 4935 DLARYRADGVIDYLGRVDHQVKIRGFRI 4962

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 52.3 bits (125), Expect = 6e-08
 Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 16/190 (8%)

Query: 48  FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
            D    +  I +  V  +  VP ++ A  +   V     +SL+ +      L  +  E+ 
Sbjct: 733 RDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQV 790

Query: 108 AKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167
              +P A +   YG TE +   T         +    G     +   I+  + + P+P  
Sbjct: 791 FAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLE-PVPVG 849

Query: 168 QLGEIWLRGPNMMRA----TKLTIDK---------KGWVHTGDLGYFDGDGQLYVVDRIK 214
            LGE++L G  + R       LT ++         +    TGDL  +  DG +    RI 
Sbjct: 850 VLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRID 909

Query: 215 ELIKYKGFQV 224
             +K +G ++
Sbjct: 910 HQVKLRGLRI 919

Length = 5163

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 29/145 (20%)

Query: 94  SGAAPLG---KELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG 150
           SG APL    +  +  C      A + QGYGLTET   AT   S     ++G  G   P 
Sbjct: 427 SGGAPLSGDTQRFINICL----GAPIGQGYGLTETCAGATF--SEWDDTSVGRVGPPLPC 480

Query: 151 VEALIVSVD------TQKPLPPNQLGEIWLRGPNMMRA-------TK--LTIDKKG--WV 193
               +VS +      + KP+P    GEI + GP++          T     +D++G  W 
Sbjct: 481 CYVKLVSWEEGGYLISDKPMPR---GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWF 537

Query: 194 HTGDLGYFDGDGQLYVVDRIKELIK 218
           +TGD+G F  DG L ++DR K+++K
Sbjct: 538 YTGDIGQFHPDGCLEIIDRKKDIVK 562

Length = 696

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 61/235 (25%), Positives = 94/235 (40%), Gaps = 34/235 (14%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P+FHV    +     L     ++     D +     IE  RVT    VP + L 
Sbjct: 221 AVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLG 280

Query: 75  LAKHGLVKKFDLSSLK--LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT-- 130
           L  H        S+L+  ++G  A P     M    ++     VI  +G+TE S + T  
Sbjct: 281 LLNHMREAGLRFSTLRRTVIGGSACP---PAMIRTFEDEYGVEVIHAWGMTEMSPLGTLC 337

Query: 131 ------MENSFAGSRNI-GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMMR 181
                  +      R +    G +  GV+  IV  D  + LP +    G++ +RGP    
Sbjct: 338 KLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGP---- 392

Query: 182 ATKLTIDK----------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
                ID+           GW  TGD+   D DG + + DR K++IK  G  ++S
Sbjct: 393 ---WVIDRYFRGDASPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISS 444

Length = 539

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 19/81 (23%)

Query: 155 IVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKK------G-----WVHTG 196
           IV  DT    P   +GEIW+ G N+          T+ T          G     W+ TG
Sbjct: 383 IVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTG 442

Query: 197 DLGYFDGDGQLYVVDRIKELI 217
           DLG+   +G+L++V RIK+L+
Sbjct: 443 DLGFIS-EGELFIVGRIKDLL 462

Length = 578

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 30/221 (13%)

Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP-LIL 73
           +LC LP  H + ++     G    G  ++L       +    IEKH+V    +VPP + L
Sbjct: 226 YLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSL 285

Query: 74  ALAKHGLVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVI-----QGYGLTETSG 127
            L        +  L+SLKL+  G A L + L    A+ +P+   +     Q +G+ E  G
Sbjct: 286 WLQAIAEGGSRAQLASLKLLQVGGARLSETL----ARRIPA--ELGCQLQQVFGMAE--G 337

Query: 128 IAT---MENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT 183
           +     +++S    R   + G  ++P  E  +   D   PLP  ++G +  RGP   R  
Sbjct: 338 LVNYTRLDDS--DERIFTTQGRPMSPDDEVWVADADGN-PLPQGEVGRLMTRGPYTFRGY 394

Query: 184 KLT-------IDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
             +        D  G+  +GDL   D DG + VV R K+ I
Sbjct: 395 YKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQI 435

Length = 536

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 57/242 (23%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA- 74
           F+  LPLFH FGL V     L  G+          E+FL         H  +VP L+   
Sbjct: 409 FMSALPLFHSFGLTVGLFTPLLTGA----------EVFLYP----SPLHYRIVPELVYDR 454

Query: 75  -----------LAKHG-LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGL 122
                      L  +      +D + L+ V +GA  L +E  ++  ++     +++GYG+
Sbjct: 455 NCTVLFGTSTFLGNYARFANPYDFARLRYVVAGAEKL-QESTKQLWQDKFGLRILEGYGV 513

Query: 123 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP--NQLGEIWLRGPNMM 180
           TE + + ++    A     G+ G + PG++A ++SV       P   Q G + L+GPN+M
Sbjct: 514 TECAPVVSINVPMAA--KPGTVGRILPGMDARLLSV-------PGIEQGGRLQLKGPNIM 564

Query: 181 RATKLTIDK-----------------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ 223
               L ++K                 +GW  TGD+  FD  G + +  R K   K  G  
Sbjct: 565 NGY-LRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEM 623

Query: 224 VT 225
           V+
Sbjct: 624 VS 625

Length = 718

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 32/214 (14%)

Query: 34  GQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK 90
           G L  G  ++L+ K    D +   R I +  VT +W+   L   L          L+ L+
Sbjct: 187 GALLNGGRLVLIDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPE---ALAGLR 243

Query: 91  --LVGSGA--APLGKELMEECAKNVPSATVIQGYGLTETSGIAT---MENSFAGSRNIGS 143
             LVG         + ++  C    P   +I GYG TE +  +T   +      + +I  
Sbjct: 244 QLLVGGDVLSPAHVRRVLAAC----PGLRLINGYGPTENTTFSTCHVITRLDEAADSI-P 298

Query: 144 AGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM----MRATKLT-------IDKKG- 191
            G   P     I+  +  +P+P    GE+++ G  +    +   +LT           G 
Sbjct: 299 IGRPIPNTTVYILD-EEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGE 357

Query: 192 -WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
               TGDL  +  DG +  + RI   +K +GF++
Sbjct: 358 RLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRI 391

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 59/179 (32%), Positives = 76/179 (42%), Gaps = 53/179 (29%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAP------------LGKE 102
           I+KH+VT  +  P  I AL K G    KK+DLSSL+L+GS   P            +G E
Sbjct: 335 IDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGE 394

Query: 103 LMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVD 159
                    P   T  Q    TET GI  M     G+  +  GSA    PG++  +V  +
Sbjct: 395 -------RCPIVDTWWQ----TETGGI--MITPLPGATPLKPGSATRPLPGIQPAVVD-E 440

Query: 160 TQKPLPPNQLG-----EIWLRGPNMMRATKLTI--DKKGWVHT------GDLGYFDGDG 205
              PL   + G     + W   P MMR    TI  D + +V T      G   YF GDG
Sbjct: 441 EGNPLEGGEGGNLVIKDPW---PGMMR----TIYGDHERFVKTYFSTFKG--MYFTGDG 490

Length = 637

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 27/197 (13%)

Query: 49   DLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
            D E     +E+H VT I   PP+ L  LA+H        +       G A +    +   
Sbjct: 2224 DPEQLYDEMERHGVT-ILDFPPVYLQQLAEHAERDGRPPAVRVYCFGGEA-VPAASLRLA 2281

Query: 108  AKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAP------GVEALIVSVDTQ 161
             + +    +  GYG TE      +   +          A  P         A I+  D  
Sbjct: 2282 WEALRPVYLFNGYGPTEAVVTPLL---WKCRPQDPCGAAYVPIGRALGNRRAYILDADLN 2338

Query: 162  KPLPPNQLGEIWLRGPNMMR---------ATKLTIDKKGWV-----HTGDLGYFDGDGQL 207
              L P   GE++L G  + R         A +   D           TGDL  +  DG +
Sbjct: 2339 -LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVV 2397

Query: 208  YVVDRIKELIKYKGFQV 224
              + RI   +K +GF++
Sbjct: 2398 EYLGRIDHQVKIRGFRI 2414

Length = 5163

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 25/137 (18%)

Query: 55  RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL----GKELMEECA 108
           R +EK++V  ++  P  I  L K    L++K DLSSL+ +     PL       + E  A
Sbjct: 321 RIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISE--A 378

Query: 109 KNVPSATVIQGYGLTETS--------GIATMENSFAGSRNIGSAGALAPGVEALIVSVDT 160
             VP   VI  Y  TET         G+             GS G    G    +++  T
Sbjct: 379 LGVP---VIDNYWQTETGWPILAIARGVEDRPTRL------GSPGVPMYGYNVKLLNEVT 429

Query: 161 QKPLPPNQLGEIWLRGP 177
            +P  PN+ G + + GP
Sbjct: 430 GEPCGPNEKGVLVIEGP 446

Length = 629

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 59/255 (23%), Positives = 93/255 (36%), Gaps = 49/255 (19%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D  + C +PL+H     +  C  L  G  + L  KF    F + +     T I  V  L 
Sbjct: 129 DRTYTC-MPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELC 187

Query: 73  LALAKHGLVKKFD-LSSLKLV-GSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGI 128
             L        +D    +++  G+G  P   ++ E   +  NVP   + + Y  TE  G+
Sbjct: 188 RYLL-ATPPSPYDRDHKVRVAYGNGLRP---DIWERFRERFNVP--EIGEFYAATE--GV 239

Query: 129 ATMENSFAGSRNIGSAGALAP-------GVEALI-VSVDTQKPL-----------PPNQL 169
               N   G    G+ G               L+ +  +T  P+           P  + 
Sbjct: 240 FAFTNHNVGPFTAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEP 299

Query: 170 GEIWLRGPNMMRAT-------------KLTID--KKG--WVHTGDLGYFDGDGQLYVVDR 212
           GE+  R     R               KL  D  +KG  W  TGDL   D DG+ Y +DR
Sbjct: 300 GEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDR 359

Query: 213 IKELIKYKGFQVTSN 227
           + +  ++K   V++ 
Sbjct: 360 LGDTFRWKSENVSTG 374

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 23  FHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           + V GL V        G+ ++L        D  +      +  VT        + A  K 
Sbjct: 321 WLVSGLLV--------GATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKA 372

Query: 79  GLV--KKFDLSSLKLVGSGAAPL 99
           GLV  +  DLS+L+ +GS  +PL
Sbjct: 373 GLVPGETHDLSALRTIGSTGSPL 395

Length = 655

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 34/211 (16%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
            CVLPL+HV GL       L  G  +IL      +      E              L+L 
Sbjct: 164 FCVLPLYHVSGLMQFMRSFLTGGKLVIL----PYKRLKSGQELP-----PNPSDFFLSLV 214

Query: 77  KHGLVKKFD-----LSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTET-SGIA 129
              L +        L+  + +  G AP    L+E+  +  +  A     YG+TET S IA
Sbjct: 215 PTQLQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPT---YGMTETASQIA 271

Query: 130 TM--ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-TKLT 186
           T+  ++  AG+    S+G + P           Q  +P NQ G I ++  ++        
Sbjct: 272 TLKPDDFLAGNN---SSGQVLPHA---------QITIPANQTGNITIQAQSLALGYYPQI 319

Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           +D +G   T DLGY D  G L+++ R  + I
Sbjct: 320 LDSQGIFETDDLGYLDAQGYLHILGRNSQKI 350

Length = 452

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 25/196 (12%)

Query: 49   DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
            D E  ++ IE+ +VT +  VP ++  L +     +  LS  ++V  G A L  E +    
Sbjct: 1797 DPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEA-LEVEALRPWL 1855

Query: 109  KNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ------K 162
            + +P   +   YG TET     ++ +    R     G  +  +   I ++ T        
Sbjct: 1856 ERLPDTGLFNLYGPTET----AVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLN 1911

Query: 163  PLPPNQLGEIWLRGPNMMR---------ATKLTIDKKGWV-----HTGDLGYFDGDGQLY 208
            P+P    GE++L G  + R         A +   D  G V      TGDL  +  DG + 
Sbjct: 1912 PVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIE 1971

Query: 209  VVDRIKELIKYKGFQV 224
             + RI   +K +GF++
Sbjct: 1972 YLGRIDHQVKIRGFRI 1987

Length = 3956

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 36/208 (17%)

Query: 39  GSCIIL----MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGS 94
           G  ++L    +A  DL        K  VT I  VP     L +H  +     SS++ V  
Sbjct: 171 GGRVVLADNALALPDLP------AKAEVTLINTVPSAARELLRHDALP----SSVRTVNL 220

Query: 95  GAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT---MENSFAGSRNIGSAGALAPGV 151
              PL +EL++          V   YG +E +  +T   +E   + + +IG       G 
Sbjct: 221 AGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGASRTPSIGRP---LAGT 277

Query: 152 EALIVSVDTQKPLPPNQLGEIWLRG----------PNMMRATKLTIDKKGWVH-----TG 196
           +A ++     +P+P    GE+++ G          P +     L     G        TG
Sbjct: 278 QAYVLD-AHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTG 336

Query: 197 DLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           DL     DGQL  + RI + +K +GF++
Sbjct: 337 DLVRRRADGQLEYLGRIDDQVKVRGFRI 364

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 62/205 (30%), Positives = 89/205 (43%), Gaps = 45/205 (21%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LPLFHV G   I    L  G+ +++  K  LE   +A+     TH  +VP  +  L    
Sbjct: 183 LPLFHVSGQG-IVWRWLYAGATLVVRDKQPLE---QALAG--CTHASLVPTQLWRL---- 232

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ---GYGLTETSGIATMENSFA 136
           L  + +  SLK V  G A +  EL E+          I+   GYGLTE      M ++  
Sbjct: 233 LDNRSEPLSLKAVLLGGAAIPVELTEQAE-----QQGIRCWCGYGLTE------MASTVC 281

Query: 137 GSRNIGSAGA--LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM----MRATKLT--ID 188
             R  G AG     PG E  +V             GEIWLRG ++     R  +L   ++
Sbjct: 282 AKRADGLAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN 329

Query: 189 KKGWVHTGDLGYFDGDGQLYVVDRI 213
            +GW  T D G +   G+L ++ R+
Sbjct: 330 DEGWFATRDRGEWQN-GELTILGRL 353

Length = 458

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 22/210 (10%)

Query: 34  GQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK 90
           G L  G+ + L+      D E F   +    VT + +VP  + AL +   V         
Sbjct: 717 GALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL-PRPQRA 775

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS-GIATMENSFAGSRNIGSA-GALA 148
           LV  G A L  +L+       P A +I  YG TET+ G++T E S           G   
Sbjct: 776 LVCGGEA-LQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPL 834

Query: 149 PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR---------ATKLTIDKKG-----WVH 194
             +   I+      P+P   +GE+++ G  + R         A +   D  G        
Sbjct: 835 ANLGLYILDHYLN-PVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYR 893

Query: 195 TGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           TGDL  +  DG +  + R+   +K +GF++
Sbjct: 894 TGDLARYRADGVIEYLGRMDHQVKIRGFRI 923

Length = 3956

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 47/143 (32%), Positives = 64/143 (44%), Gaps = 25/143 (17%)

Query: 100 GKELMEECAKNV----PSATVIQGYGLTET----SGIA-TMENSFAGSR-NIGSAGALAP 149
           G+EL  + AK +    PSAT+   YG TE     + I  T E      R  IG A    P
Sbjct: 269 GEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYA---KP 325

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRGPNM----MRATKLT------IDKKGWVHTGDLG 199
               LI+  +  K LP  + GEI + GP++    +   + T       D +   HTGD G
Sbjct: 326 DSPLLIIDEEGTK-LPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAG 384

Query: 200 YFDGDGQLYVVDRIKELIKYKGF 222
           Y + DG L+   RI   IK  G+
Sbjct: 385 YLE-DGLLFYQGRIDFQIKLNGY 406

Length = 503

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 117 IQGYGLTETSG-IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP--LPPNQLGEIW 173
            QGYGLTET+G I         + +IG  G ++P  +  + + +T K     P   GE+ 
Sbjct: 490 YQGYGLTETTGPIFVQHADDNNTESIG--GPISPNTKYKVRTWETYKATDTLPK--GELL 545

Query: 174 LRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
           ++  ++          TK    + G+  TGD+   + +G L  +DR K L+K
Sbjct: 546 IKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVK 597

Length = 746

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH---GLVKKFDLSSLKLVGSG 95
           G+ +I ++  + E  L  ++  + T I   P  +L LA+      +    L SLK    G
Sbjct: 160 GATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKL-SLKKGIFG 218

Query: 96  AAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           A P  +E M +  +N         YGLTE  G    E
Sbjct: 219 AEPWSEE-MRKVIENRFGCKAFDIYGLTEGFGPGAGE 254

Length = 438

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 20/207 (9%)

Query: 36   LQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93
            L  G C+++     +D E   +AI  HR++     P  +   A+       D +SL +  
Sbjct: 3300 LICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGA--DCASLDIYV 3357

Query: 94   SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEA 153
             G   +     E+  + +    +  GYG TE     T+      +        +   V  
Sbjct: 3358 FGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAG 3417

Query: 154  L-IVSVDTQ-KPLPPNQLGEIWLRGPNMMRA----TKLTIDK----------KGWVHTGD 197
              I  +D Q  P+P    GE+++ G  + R       LT ++               TGD
Sbjct: 3418 RSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGD 3477

Query: 198  LGYFDGDGQLYVVDRIKELIKYKGFQV 224
            L  +  DG +  + RI   +K +GF++
Sbjct: 3478 LARYRADGVIEYLGRIDHQVKIRGFRI 3504

Length = 3956

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 55/217 (25%)

Query: 21  PLFHVFGLAVITCGQLQKGSCIILMA----KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           P+ H +GL       L +GS  +++     KF L + LR   +H    ++ VP ++  L 
Sbjct: 150 PVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI-LRNTPQHI---LYAVPLMLHILG 205

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA 136
           +  L   F   ++   G    PL +    +  +   +  ++Q YG +E   ++       
Sbjct: 206 RL-LPGTFQFHAVMTSG---TPLPEAWFYKLRER--TTYMMQQYGCSEAGCVS------- 252

Query: 137 GSRNIGSAGALAPGVEALIVSVDTQKPLP---------PNQLGEIWLRGPNMMRATKLTI 187
                     + P +++    +D   PLP          N   EI            + +
Sbjct: 253 ----------ICPDMKS---HLDLGNPLPHVSVSAGSDENAPEEI-----------VVKM 288

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
             K  + T DLGY    G L+ + R+ ++I   G  V
Sbjct: 289 GDKE-IFTKDLGYKSERGTLHFMGRMDDVINVSGLNV 324

Length = 414

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEE 106
           D ++  R   K  +T        + AL K G+   +  DLSSL+ + S  +PL  E  + 
Sbjct: 316 DPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDW 375

Query: 107 CAKNV 111
              +V
Sbjct: 376 VYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 23/217 (10%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL---ILALA 76
           +P+FH  GL ++    +  G  ++    FD E  L     HR      VP +   IL L 
Sbjct: 224 MPMFHGLGLGMLML-TIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELP 282

Query: 77  KHGLVKKFDLSSLKLVGSGA----APLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              +  +  L  L++V S        LG+  M+          +  GYG TE  GI  + 
Sbjct: 283 PR-VRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGD-----ILYNGYGSTEV-GIGALA 335

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP-NMMRAT----KLTI 187
                     + G    G    I+  +  +P+ P   G I++ G     R T    K  +
Sbjct: 336 TPADLRDAPETVGKPVAGCPVRILDRNN-RPVGPRVTGRIFVGGELAGTRYTDGGGKAVV 394

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           D  G   TGD+GY D  G+L++V R  ++I   G  V
Sbjct: 395 D--GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENV 429

Length = 516

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 36/150 (24%)

Query: 71  LILALAK-HGLVKKFDLSSLKLVGSGAAPLGKEL--------MEECAKNVPSATVIQGYG 121
           L+ AL +   L ++F  S LKL+    A L +++           C + +   T   G G
Sbjct: 318 LVPALERDAALRRRF-FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMT---GLG 373

Query: 122 LTETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 178
           +TET+  AT      S AG  NI   G  APG E  +V V  +         E+ ++GPN
Sbjct: 374 MTETAPSATFTTGPLSRAG--NI---GLPAPGCEVKLVPVGGKL--------EVRVKGPN 420

Query: 179 MM----RATKLT---IDKKGWVHTGDLGYF 201
           +     RA +LT    D++G+  +GD   F
Sbjct: 421 VTPGYWRAPELTAEAFDEEGYYRSGDAVRF 450

Length = 614

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 57/242 (23%), Positives = 88/242 (36%), Gaps = 44/242 (18%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH--RVTHIWVVPPLIL 73
           FLC +P++HV    V     +     +            + I     RV H   VP L +
Sbjct: 227 FLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH--GVPTLWI 284

Query: 74  ALAKHGLV---KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
            L  H L    ++  L  + + GS   P+  +  EE         V+  +G+TETS + T
Sbjct: 285 QLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY----GVDVVHVWGMTETSPVGT 340

Query: 131 MENSFAGSRNIG------SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP------- 177
           +    +G           S G     +E  IV+            GEI +RG        
Sbjct: 341 VARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTASYY 400

Query: 178 -----------NMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKY 219
                      +  R         + T D  GW+ TGD+G    DG L + DR +++I+ 
Sbjct: 401 HSPTEEGGGAASTFRGEDVEDANDRFTAD--GWLRTGDVGSVTRDGFLTIHDRARDVIRS 458

Query: 220 KG 221
            G
Sbjct: 459 GG 460

Length = 576

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 25/145 (17%)

Query: 100 GKELMEECAKNV----PSATVIQGYGLTETSGIATMENSFAGSRNIGSA------GALAP 149
           G+EL  + AK +    P AT+   YG TE +   T   S   ++ I         G   P
Sbjct: 267 GEELPVKTAKALLERFPKATIYNTYGPTEATVAVT---SVKITQEILDQYPRLPIGFAKP 323

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR----------ATKLTIDKKGWVHTGDLG 199
            +   I+  + + PLP  + GEI + GP++ +              + + +    TGD G
Sbjct: 324 DMNLFIMDEEGE-PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAG 382

Query: 200 YFDGDGQLYVVDRIKELIKYKGFQV 224
               DGQL+   R+   IK  G+++
Sbjct: 383 TIT-DGQLFYQGRLDFQIKLHGYRI 406

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 28/105 (26%)

Query: 145 GALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP-------------NMMRATKLTIDKKG 191
           G + PG +  IV+ DT      +++GEIW+                             G
Sbjct: 356 GMVMPGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTGMTKNTFEVFPNSSSDG 415

Query: 192 -----WVHTGDLGYF----------DGDGQLYVVDRIKELIKYKG 221
                +V TG LG+              G L+VV  I E ++  G
Sbjct: 416 IGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSIDETLEVSG 460

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 25/186 (13%)

Query: 57   IEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
            ++++ VT +  VPPL+       L      +SL+ + SG   L  EL     + +P   +
Sbjct: 1360 VQQYGVTTLHFVPPLLQLFIDEPLAA--ACTSLRRLFSGGEALPAELRNRVLQRLPQVQL 1417

Query: 117  IQGYGLTETSGIATMENSFA--GSRN-IGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEI 172
               YG TET+   T     A  G R+ IG      P    L   +D +   LPP   GE+
Sbjct: 1418 HNRYGPTETAINVTHWQCQAEDGERSPIGR-----PLGNVLCRVLDAELNLLPPGVAGEL 1472

Query: 173  WLRGPNMMR---------ATKLTIDKKG-----WVHTGDLGYFDGDGQLYVVDRIKELIK 218
             + G  + R         A +   D  G        TGD   ++ DG L  + R+ + +K
Sbjct: 1473 CIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVK 1532

Query: 219  YKGFQV 224
             +GF+V
Sbjct: 1533 LRGFRV 1538

Length = 4334

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 9/183 (4%)

Query: 3   TMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIE 58
           +M          V      +  V G + I    L  G+  +L        D  ++   +E
Sbjct: 264 SMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVE 323

Query: 59  KHRVTHIWVVPPLILALAKH--GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
           ++ V  ++  P  I  L K     ++K DLSSL  +     PL  E       +     V
Sbjct: 324 RYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPL-DEPTAHWITDGLGKPV 382

Query: 117 IQGYGLTETSG--IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWL 174
           I  Y  TET    +A M         +GS G    G    ++   T +P  PN+ G + +
Sbjct: 383 IDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTV 442

Query: 175 RGP 177
             P
Sbjct: 443 VPP 445

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 23/134 (17%)

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT-----VIQGYGLTETSGIATMENS 134
           L + F   +L+L+  G A L  +L E         T        GYG TET+   T   +
Sbjct: 340 LRRSF-FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTT--GT 396

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKLTI 187
              +  +G  G   PGVE         K  P     E+ ++GPN+          T    
Sbjct: 397 HWDTERVGLIGLPLPGVEL--------KLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAF 448

Query: 188 DKKGWVHTGDLGYF 201
           D++G+   GD   F
Sbjct: 449 DEEGFYRLGDAARF 462

Length = 624

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 26/187 (13%)

Query: 54  LRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS 113
            R I   R+T +   P     L   G   +  L++L     G   L ++L E        
Sbjct: 177 ARLIADERITIMQATPATWRMLLAAGWRGRESLTAL----CGGEALPRDLAERLLSTG-- 230

Query: 114 ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIW 173
           A +   YG TET+  +T     A    + + G      +  ++  D  +P+PP   GE++
Sbjct: 231 AELWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANTQVYVLDED-LQPVPPGVPGELY 288

Query: 174 LRGPNMMR----ATKLTIDKKGWVH------------TGDLGYFDGDGQLYVVDRIKELI 217
           + G  + R      +LT ++  +V             TGDL  +  DG+L  + R  + +
Sbjct: 289 IGGDGVARGYLGRPELTAER--FVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQV 346

Query: 218 KYKGFQV 224
           K +GF++
Sbjct: 347 KIRGFRI 353

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 36/240 (15%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V    LPL+H  G  +   G +  G+ ++L  KF    F     K+ VT    +  L+  
Sbjct: 184 VVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQYIGELLRY 243

Query: 75  LAKHGLVKKFDLSSLKL-VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           L             ++L +G+G  P   ++  E  +      V + Y  TE + I  +  
Sbjct: 244 LCNQPQSDNDRDHKVRLAIGNGLRP---DVWREFLRRFGPIHVWETYASTEGN-IGFI-- 297

Query: 134 SFAGSRN-IGSAGALAPGVEAL-IVSVDTQKPLP---------PNQLGEIWL-------- 174
           ++ G    +G A  L   +    ++  D +K  P         P   GE  L        
Sbjct: 298 NYTGRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKITSQ 357

Query: 175 ------RGPNMMRATKLTID--KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                  GP  +   KL  D  KKG  + +TGDL   D    LY  DR  +  ++KG  V
Sbjct: 358 SPFLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENV 417

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHI 65
           V  C LPL+H  G  V     L  G+ + L  KF    F   + ++R T  
Sbjct: 242 VLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAF 292

Length = 600

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 59/224 (26%), Positives = 86/224 (38%), Gaps = 51/224 (22%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGS---CIILMAKFDLEMFLRAIEK----HRVTHIWVVP 69
           L  LP  H+ GL V+    +  GS    + + A FD     RA+ +     R T +    
Sbjct: 78  LLALPAHHIAGLQVLV-RSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSL---V 133

Query: 70  PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
           P+ LA A         L+ L  V  G  P    +++  A       V++ YG++ETSG  
Sbjct: 134 PMQLAKALDDPAATAALAELDAVLVGGGPAPAPVLDAAAA--AGINVVRTYGMSETSG-- 189

Query: 130 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL----GEIWLRGPNMMRATKL 185
                          G +  GV           PL   ++    G I L GP + +  + 
Sbjct: 190 ---------------GCVYDGV-----------PLDGVRVRVEDGRIALGGPTLAKGYRN 223

Query: 186 TID-----KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            +D     + GW  T DLG  D DG L V+ R  + I   G  V
Sbjct: 224 PVDPDPFAEPGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTV 266

Length = 358

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 34/133 (25%)

Query: 87  SSLKLVGSGAAPLGKEL--------MEECAKNVPSATVIQGYGLTETSGIATM---ENSF 135
             L+L+    A L +++        +    + +P  +   G G TET+  AT        
Sbjct: 289 KRLRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTS---GLGATETAPTATFVHWPTDR 345

Query: 136 AGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM----RATKLT---ID 188
           +G   I   G  APG E  +V    +         E+ ++GPN+     R  +LT    D
Sbjct: 346 SG--VI---GLPAPGTELKLVPNGGKL--------EVRVKGPNVTPGYWRDPELTAEAFD 392

Query: 189 KKGWVHTGDLGYF 201
           ++G+   GD   F
Sbjct: 393 EEGFYRIGDAVRF 405

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK05691	4334	peptide synthase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.98
PRK13388	540	acyl-CoA synthetase; Provisional	99.98
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.97
PRK08308	414	acyl-CoA synthetase; Validated	99.97
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.97
PLN03102	579	acyl-activating enzyme; Provisional	99.97
PLN02479	567	acetate-CoA ligase	99.97
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.97
PRK09192	579	acyl-CoA synthetase; Validated	99.97
PRK05850	578	acyl-CoA synthetase; Validated	99.97
PRK07798	533	acyl-CoA synthetase; Validated	99.97
PRK08162	545	acyl-CoA synthetase; Validated	99.97
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.96
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	99.94
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.93
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.92
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.92
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.9
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.88
PTZ00297	1452	pantothenate kinase; Provisional	99.68
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.57
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.04
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	98.99
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.83
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.67
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	98.59
PRK09188	365	serine/threonine protein kinase; Provisional	98.35
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.97
PLN02620	612	indole-3-acetic acid-amido synthetase	97.41
PLN02249	597	indole-3-acetic acid-amido synthetase	97.38
PLN02247	606	indole-3-acetic acid-amido synthetase	97.31
PRK02261	137	methylaspartate mutase subunit S; Provisional	86.1
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	84.12
PLN02736	651	long-chain acyl-CoA synthetase	82.44
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	80.25

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=6.6e-43  Score=288.96  Aligned_cols=218  Identities=50%  Similarity=0.836  Sum_probs=199.1

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~   87 (228)
                      ...+..|+.++.+|++|.+|+...+.+.+..|++++..+.+++..+++.+++|++|+++++|+++..|++.+...+.+++
T Consensus       220 ~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~  299 (537)
T KOG1176|consen  220 WELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLS  299 (537)
T ss_pred             ccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCC
Confidence            56667899999999999999999666677777788888889999999999999999999999999999998877778999


Q ss_pred             CceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCC
Q 027096           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (228)
Q Consensus        88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g  167 (228)
                      ++|.+.++|+++++++.+++++.+|+..+.+.||+||+++..+.+..... ...+++|+++++++.++.+ ++|+.++++
T Consensus       300 sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~  377 (537)
T KOG1176|consen  300 SLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPN  377 (537)
T ss_pred             ccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc-CcccccCccccceEEEeeC-CCCCCCCCC
Confidence            99999999999999999999999988999999999999987776655543 6789999999999988888 999999999


Q ss_pred             CceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          168 QLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       168 ~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.||||+||+.++.       ++.+.++++|||+|||+|++|+||++++++|++|+||.+|.+|+|.
T Consensus       378 ~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~  444 (537)
T KOG1176|consen  378 QTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPA  444 (537)
T ss_pred             CceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHH
Confidence            99999999999997       5666777779999999999999999999999999999999999984

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=9.1e-41  Score=262.84  Aligned_cols=223  Identities=29%  Similarity=0.402  Sum_probs=201.7

Q ss_pred             ecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCC
Q 027096            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (228)
Q Consensus         4 ~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~   82 (228)
                      ....++++..+++++..|++|.+|.....+++|..|+++|++ +.+++...++.|+++++|+++.+|+++..+++.++..
T Consensus       266 vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~  345 (596)
T KOG1177|consen  266 VGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQ  345 (596)
T ss_pred             HHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhc
Confidence            345688999999999999999999888899999999999996 5799999999999999999999999999999999889


Q ss_pred             CCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeecc-CCCCCCCCCCccccCCCceEEEEeCCCC
Q 027096           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN-SFAGSRNIGSAGALAPGVEALIVSVDTQ  161 (228)
Q Consensus        83 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~-~~~~~~~~~~~g~p~~~~~~~i~d~~~~  161 (228)
                      ..+++++|..+.+|+++|+++.+.+.+...-..+...||+||+++...... .+.......++|..+++.+..++| +.|
T Consensus       346 ~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g  424 (596)
T KOG1177|consen  346 QVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDG  424 (596)
T ss_pred             cCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCC
Confidence            999999999999999999999999999764445889999999998776543 333355667899999999999999 999


Q ss_pred             CCCCCCCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          162 KPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       162 ~~~~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ..++.|..|||++||++.|.       .+.+..+.|.||+|||++.+|++|.++++||++|+|+.+|++|+|.
T Consensus       425 ~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~  497 (596)
T KOG1177|consen  425 SEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPT  497 (596)
T ss_pred             CccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChH
Confidence            99999999999999998876       4667777889999999999999999999999999999999999984

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.7e-39  Score=273.76  Aligned_cols=221  Identities=25%  Similarity=0.404  Sum_probs=192.0

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ..++++++|++++++|++|.+++...++.++..|+++++.+ .+++..+++.|+++++|+++++|++++.+++.......
T Consensus       217 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  296 (539)
T PRK06334        217 KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQES  296 (539)
T ss_pred             HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhccc
Confidence            45678899999999999999999876788999999998875 57999999999999999999999999999887655556


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      .++++|.+++||+++++++.+++++.+++..+++.||+||++.++....... .....++|+|+++++++++|.++++++
T Consensus       297 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~vG~p~~g~~v~i~d~~~~~~~  375 (539)
T PRK06334        297 CLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNS-PKHESCVGMPIRGMDVLIVSEETKVPV  375 (539)
T ss_pred             ccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCC-CCCCCcCceecCCCEEEEEcCCCCccC
Confidence            7889999999999999999999999998899999999999987766543222 223467999999999999996778999


Q ss_pred             CCCCceEEEEecCccccccccc--------ccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRATKLT--------IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~~~~--------~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|+.|||+|+|+.++..+...        .+.++||+|||+|++|++|.+++.||.||+||++|.+|+|.
T Consensus       376 ~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~  446 (539)
T PRK06334        376 SSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLE  446 (539)
T ss_pred             CCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHH
Confidence            9999999999999988733221        12467999999999999999999999999999999999984

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.9e-39  Score=274.01  Aligned_cols=221  Identities=42%  Similarity=0.634  Sum_probs=191.9

Q ss_pred             cccc--CCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            6 QETA--GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         6 ~~~~--~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      +.++  +++.|++++++|++|.+|+...++.+++.|+++++.+  .+++..++..+.++++|+++++|+++..++.++..
T Consensus       205 ~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~  284 (534)
T COG0318         205 AALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK  284 (534)
T ss_pred             HHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCcc
Confidence            4455  8899999999999999999997777899999999987  59999999999999999999999999999998877


Q ss_pred             CCCCCCC-ceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCC
Q 027096           82 KKFDLSS-LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT  160 (228)
Q Consensus        82 ~~~~~~~-lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~  160 (228)
                      .+..+.+ +|.++.||+++++++.+++++.|+...+.+.||+||+++.++...........+.+|.|+++++++|+|.++
T Consensus       285 ~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~  364 (534)
T COG0318         285 DDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDG  364 (534)
T ss_pred             CccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCC
Confidence            7666665 999999999999999999999996678999999999998776654433113456679999999999999666


Q ss_pred             CCCCCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          161 QKPLPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       161 ~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.+ |+.|||+|+||.++..+       ...+..+|||+|||+|++|++|.++|.||.+|+|+++|+||+|+
T Consensus       365 ~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~  437 (534)
T COG0318         365 GEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPE  437 (534)
T ss_pred             CccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHH
Confidence            65666 99999999999999833       23343359999999999999999999999999999999999985

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=7.1e-39  Score=263.91  Aligned_cols=215  Identities=28%  Similarity=0.334  Sum_probs=185.8

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC--C-CHHHHHHHHHhcCceEEEechHHHHHHHhcCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~   82 (228)
                      ..+++.++|++++..++.|+.|....++.+|.+|++.++.++  + +++.+++.++++++|.+++.|+.++.|.+....+
T Consensus       206 ~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~  285 (528)
T COG0365         206 FHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGE  285 (528)
T ss_pred             HhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcc
Confidence            457888999999999999999999999999999999999864  2 3999999999999999999999999999887666


Q ss_pred             CCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 027096           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  162 (228)
Q Consensus        83 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~  162 (228)
                      +.++++||.+.++|||++++.++++.+.+ ++++.+.||+||++.+......  .. ..+..|.|+||+++.++| ++|+
T Consensus       286 ~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~--~~-~~g~~g~p~pG~~~~vvd-d~g~  360 (528)
T COG0365         286 PYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP--PV-KNGSSGLPLPGYAVRRVD-DEGN  360 (528)
T ss_pred             cccchhheeeeccCCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC--Cc-CCCCCCCCCCCceeEEEC-CCCC
Confidence            78899999999999999999999999999 6999999999999955544333  12 334449999999999999 5599


Q ss_pred             CCCCCCceEEEEecCcccc---------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          163 PLPPNQLGEIWLRGPNMMR---------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       163 ~~~~g~~Gel~v~~~~~~~---------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.|+ |+|+++.+....         .+.+.+ -+.||.|||.+++|+||+++++||.||+||+.|++|+|.
T Consensus       361 ~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y-~~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~  432 (528)
T COG0365         361 PVPPGV-GELVVRLPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPL  432 (528)
T ss_pred             cCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHH-hhceeecCceeEEccCCCEEEEeeccceEeccCeeccHH
Confidence            999999 999999986532         122222 123999999999999999999999999999999999873

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=2.4e-37  Score=263.18  Aligned_cols=217  Identities=43%  Similarity=0.789  Sum_probs=188.9

Q ss_pred             CCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC-CCCCCCCc
Q 027096           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-KKFDLSSL   89 (228)
Q Consensus        11 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-~~~~~~~l   89 (228)
                      ..++++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|+++++|++++.+.+.... ....++++
T Consensus       242 ~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l  321 (560)
T PLN02574        242 GSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSL  321 (560)
T ss_pred             CCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccc
Confidence            35688999999999999987777888999999999889999999999999999999999999999886543 34567899


Q ss_pred             eEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCc
Q 027096           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL  169 (228)
Q Consensus        90 r~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~  169 (228)
                      |.++++|+++++++.+++.+.+++..+++.||+||++.+..............++|.|.++++++|+|++++++++.|+.
T Consensus       322 r~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~  401 (560)
T PLN02574        322 KQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC  401 (560)
T ss_pred             eEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCC
Confidence            99999999999999999999998899999999999987654322222223457899999999999999888999999999


Q ss_pred             eEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          170 GEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       170 Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |||+|+|+.++..       +...+..+|||+|||+|+++++|.+++.||.||+||++|++|+|.
T Consensus       402 Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~  466 (560)
T PLN02574        402 GELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPA  466 (560)
T ss_pred             eEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHH
Confidence            9999999988863       233455689999999999999999999999999999999999985

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-37  Score=262.62  Aligned_cols=218  Identities=26%  Similarity=0.351  Sum_probs=188.6

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC--CC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~   83 (228)
                      ..+++.++|++++.+|++|.+|+.. ++.++..|+++++.+.+++..+++.++++++|+++++|++++.+++....  ..
T Consensus       241 ~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~  319 (549)
T PRK07788        241 SRVPFRAGETTLLPAPMFHATGWAH-LTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAK  319 (549)
T ss_pred             hhCCCCcCCeEEEccchHHHHHHHH-HHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCC
Confidence            4567888999999999999999976 67889999999999889999999999999999999999999999887544  44


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      ..++++|.+++||+++++++.+++++.+ +..+++.||+||++..+...... .....+++|+|+++++++++| +++++
T Consensus       320 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d-~~~~~  396 (549)
T PRK07788        320 YDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIATPED-LAEAPGTVGRPPKGVTVKILD-ENGNE  396 (549)
T ss_pred             CCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchhhccChhh-hhhcCCCcccCCCCcEEEEEC-CCcCC
Confidence            5678999999999999999999999988 57899999999998655443221 123457899999999999999 78899


Q ss_pred             CCCCCceEEEEecCccccccccc---ccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRATKLT---IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~~~~---~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+++|+.++..+...   ...+|||+|||+++++++|.+++.||.||+||++|++|+|.
T Consensus       397 ~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~  463 (549)
T PRK07788        397 VPRGVVGRIFVGNGFPFEGYTDGRDKQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPA  463 (549)
T ss_pred             CCCCCeEEEEEeCCCccccccCCCcccccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHH
Confidence            99999999999999887643221   22468999999999999999999999999999999999984

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=9.9e-38  Score=256.57  Aligned_cols=207  Identities=39%  Similarity=0.600  Sum_probs=175.4

Q ss_pred             cEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCC---HHHHHHHHHhcCceEEEechHHHHHHHhcCCCC----CCCC
Q 027096           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KFDL   86 (228)
Q Consensus        14 d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----~~~~   86 (228)
                      |++++.+|++|.+|+...++.+++.|+++++.+...   ++.+++.++++++|++.++|++++.+++..+..    ...+
T Consensus       197 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l  276 (417)
T PF00501_consen  197 DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDL  276 (417)
T ss_dssp             TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTG
T ss_pred             ceEEeeccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccccccccc
Confidence            699999999999999666999999999999998654   467899999999999999999999998843222    3467


Q ss_pred             CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 027096           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (228)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~  166 (228)
                      +++|.++++|+++++++.+++++.++.+++++.||+||++.++............+++|.|+++++++|+|++++++++.
T Consensus       277 ~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~  356 (417)
T PF00501_consen  277 SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPP  356 (417)
T ss_dssp             TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBEST
T ss_pred             ccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccccc
Confidence            88999999999999999999999996669999999999999987553222234567899999999999999777999999


Q ss_pred             CCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeec
Q 027096          167 NQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYK  220 (228)
Q Consensus       167 g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~  220 (228)
                      |+.|||+++|+.++..+       ...+..+|||+|||+|++|++|.++++||.||+||++
T Consensus       357 g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  357 GEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             TSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             cccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            99999999999988733       2345445799999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.7e-36  Score=256.82  Aligned_cols=222  Identities=46%  Similarity=0.768  Sum_probs=193.8

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      +.++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+........
T Consensus       217 ~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~  296 (537)
T PLN02246        217 PNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYD  296 (537)
T ss_pred             cccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccC
Confidence            35678999999999999999998877888999999999999899999999999999999999999999998876555566


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccC---CCCCCCCCCccccCCCceEEEEeCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---FAGSRNIGSAGALAPGVEALIVSVDTQK  162 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~---~~~~~~~~~~g~p~~~~~~~i~d~~~~~  162 (228)
                      ++++|.++++|+++++++.+.+++.+++..+++.||+||++.+++.+..   .......+.+|+|+++++++++|+++++
T Consensus       297 ~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~  376 (537)
T PLN02246        297 LSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGA  376 (537)
T ss_pred             ccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCC
Confidence            7899999999999999999999999988999999999999876544321   1112234678999999999999977899


Q ss_pred             CCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          163 PLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       163 ~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.|+.|||+++|+.++..       +...++.++||+|||+++++++|.++++||.||+||.+|.+|+|.
T Consensus       377 ~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~  448 (537)
T PLN02246        377 SLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPA  448 (537)
T ss_pred             cCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcH
Confidence            99999999999999988763       233445678999999999999999999999999999999999984

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.8e-36  Score=260.92  Aligned_cols=219  Identities=29%  Similarity=0.505  Sum_probs=185.7

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC--C-C---HHHHHHHHHhcCceEEEechHHHHHHHhcC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-D---LEMFLRAIEKHRVTHIWVVPPLILALAKHG   79 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~-~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~   79 (228)
                      +.++++++|++++.+|++|..++...++.++..|+++++.+.  + +   ...+++.++++++|++.++|+++..+++.+
T Consensus       247 ~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  326 (632)
T PRK07529        247 LLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP  326 (632)
T ss_pred             HhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc
Confidence            456778999999999999999998878999999999999753  2 1   367889999999999999999999998765


Q ss_pred             CCCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeC-
Q 027096           80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-  158 (228)
Q Consensus        80 ~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~-  158 (228)
                      . ...+++++|.+++||+++++++.+++++.+ +.++++.||+||+++++...... .....+++|.|+++++++++.. 
T Consensus       327 ~-~~~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~~~d  403 (632)
T PRK07529        327 V-DGHDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPD-GERRIGSVGLRLPYQRVRVVILD  403 (632)
T ss_pred             c-cCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCcc-ccccCCCcccccCCceEEEEEcC
Confidence            3 234678999999999999999999999988 79999999999998876554332 2335678999999999998632 


Q ss_pred             CCC---CCCCCCCceEEEEecCcccccc------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          159 DTQ---KPLPPNQLGEIWLRGPNMMRAT------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       159 ~~~---~~~~~g~~Gel~v~~~~~~~~~------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++   ++++.|+.|||+|+|+.++..+      ...+..++||+|||+|++++||.+++.||.||+||++|++|+|+
T Consensus       404 ~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~  481 (632)
T PRK07529        404 DAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPA  481 (632)
T ss_pred             CCCcccccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHH
Confidence            445   7899999999999999988733      22233578999999999999999999999999999999999985

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.1e-36  Score=263.25  Aligned_cols=222  Identities=21%  Similarity=0.287  Sum_probs=186.6

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~   80 (228)
                      ...++++++|++++.+|++|+.+....++.+|+.|+++++.++    +++..+++.|+++++|+++.+|++++.|.+...
T Consensus       309 ~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  388 (666)
T PLN02654        309 KYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGD  388 (666)
T ss_pred             HHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCc
Confidence            3457899999999999999999987778899999999999864    479999999999999999999999999987643


Q ss_pred             --CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCC--CeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEE
Q 027096           81 --VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV  156 (228)
Q Consensus        81 --~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~--~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~  156 (228)
                        ....++++||.++++|+++++++.+++.+.++.  .++.+.||+||+++.............++++|.|+++++++|+
T Consensus       389 ~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~  468 (666)
T PLN02654        389 EYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV  468 (666)
T ss_pred             cccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEE
Confidence              234567899999999999999999999998853  6899999999998765543221112356789999999999999


Q ss_pred             eCCCCCCCCCCCceEEEEecC--ccccc-------ccccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          157 SVDTQKPLPPNQLGEIWLRGP--NMMRA-------TKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       157 d~~~~~~~~~g~~Gel~v~~~--~~~~~-------~~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      | ++|++++.++.|||+++++  .++..       +...+  ..+|||+|||++++|+||.++++||+||+||++|++|+
T Consensus       469 d-~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~  547 (666)
T PLN02654        469 D-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIG  547 (666)
T ss_pred             C-CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEEC
Confidence            9 7889999888999999994  44431       11111  13689999999999999999999999999999999999


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      |.
T Consensus       548 p~  549 (666)
T PLN02654        548 TA  549 (666)
T ss_pred             HH
Confidence            84

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=3.4e-36  Score=255.46  Aligned_cols=220  Identities=24%  Similarity=0.346  Sum_probs=191.6

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++++|++++.+|++|..++...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..+..........
T Consensus       231 ~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~  310 (547)
T PRK13295        231 ERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRP  310 (547)
T ss_pred             HHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCC
Confidence            45678899999999999999998877899999999999998899999999999999999999999999998876656667


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.++++|+++++++.+++++.+ ++++++.||+||++.+...............+|+|+++++++++| +++++++
T Consensus       311 ~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~  388 (547)
T PRK13295        311 VSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLP  388 (547)
T ss_pred             cccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCC
Confidence            88999999999999999999999988 799999999999987665443222223346789999999999999 7789999


Q ss_pred             CCCceEEEEecCccccccccc-----ccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRATKLT-----IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~~~~-----~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+|+++.++..+...     ...+|||+|||+++++++|.+++.||.||+||.+|.+|+|.
T Consensus       389 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~  455 (547)
T PRK13295        389 AGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVV  455 (547)
T ss_pred             CCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHH
Confidence            999999999999887633221     12468999999999999999999999999999999999984

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.4e-36  Score=257.17  Aligned_cols=215  Identities=29%  Similarity=0.456  Sum_probs=182.0

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC--CC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~   83 (228)
                      ..++++++|+++..+|++|..++.. ++.++..|+++++.+.+++..+++.++++++|+++++|+++..+++....  ..
T Consensus       206 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~  284 (563)
T PLN02860        206 AIVGYGEDDVYLHTAPLCHIGGLSS-ALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTW  284 (563)
T ss_pred             hhcCCCCCCEEEEecCchhhccHHH-HHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhcc
Confidence            4578899999999999999999876 78999999999999999999999999999999999999999999875432  22


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---------------------CCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---------------------GSRNIG  142 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---------------------~~~~~~  142 (228)
                      ..++++|.+++||+++++++.+++++.|++.++++.||+||++..+.......                     ......
T Consensus       285 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (563)
T PLN02860        285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGV  364 (563)
T ss_pred             ccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCc
Confidence            45789999999999999999999999998899999999999986543321110                     011123


Q ss_pred             CccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCC
Q 027096          143 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE  215 (228)
Q Consensus       143 ~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d  215 (228)
                      ++|+|++++++++++.+      +|+.|||+++|+.++..+       ...+..+|||+|||+|+++++|.+++.||.||
T Consensus       365 ~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d  438 (563)
T PLN02860        365 CVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSND  438 (563)
T ss_pred             ccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccc
Confidence            68999999999999843      578899999999988633       33444689999999999999999999999999


Q ss_pred             ceeecCeEeecC
Q 027096          216 LIKYKGFQVTSN  227 (228)
Q Consensus       216 ~i~~~G~~v~p~  227 (228)
                      +||++|++|+|.
T Consensus       439 ~i~~~G~~v~p~  450 (563)
T PLN02860        439 RIKTGGENVYPE  450 (563)
T ss_pred             eeEECCEEccHH
Confidence            999999999984

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.8e-36  Score=251.15  Aligned_cols=218  Identities=32%  Similarity=0.470  Sum_probs=190.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|++++.+++........
T Consensus       183 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  262 (496)
T PRK06839        183 FAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN  262 (496)
T ss_pred             HHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCC
Confidence            34578899999999999999998877788999999999988899999999999999999999999999999877666677


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.++++|+++++++.+.+++.  +.++.+.||+||++.++............+++|+|+++++++++| +++++++
T Consensus       263 ~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~  339 (496)
T PRK06839        263 LQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNKVE  339 (496)
T ss_pred             CcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCCCC
Confidence            8899999999999999999999886  789999999999997654443332234567899999999999999 6777799


Q ss_pred             CCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+|+++.++..+       ...+ .+|||+|||+++++++|.+++.||.||+||.+|.+|+|+
T Consensus       340 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  407 (496)
T PRK06839        340 VGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPL  407 (496)
T ss_pred             CCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHH
Confidence            999999999999887622       2222 478999999999999999999999999999999999985

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.4e-36  Score=262.37  Aligned_cols=214  Identities=28%  Similarity=0.452  Sum_probs=174.0

Q ss_pred             cCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC-------
Q 027096            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-------   81 (228)
Q Consensus         9 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-------   81 (228)
                      +++++|++++.+|++|+++... .+.+++.|+++++.+ .++..+++.++++++|+++++|++++.+.+....       
T Consensus       265 ~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  342 (666)
T PLN02614        265 ALTVKDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGF  342 (666)
T ss_pred             CCCCCcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCH
Confidence            5788999999999999999865 567788999998875 5899999999999999999999999887642100       


Q ss_pred             --------------------------CC-----------CCC-CCceEEEEcccCCCHHHHHHHHHhCCCCeEEeccccc
Q 027096           82 --------------------------KK-----------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT  123 (228)
Q Consensus        82 --------------------------~~-----------~~~-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~t  123 (228)
                                                .+           ..+ .++|.+++||+++++++ +++.+.+++.++++.||+|
T Consensus       343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~T  421 (666)
T PLN02614        343 LKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLT  421 (666)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchH
Confidence                                      00           001 58999999999999875 5666767678999999999


Q ss_pred             ccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCC--CCCCCCCCceEEEEecCccccc-------ccccccCCCeEE
Q 027096          124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT--QKPLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVH  194 (228)
Q Consensus       124 E~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~--~~~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~  194 (228)
                      |++......... .....+++|+|+|+++++|+|.++  +++++.|+.|||+|+||.++..       +.+.+ .+|||+
T Consensus       422 E~~~~~~~~~~~-~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~  499 (666)
T PLN02614        422 ESCAGTFVSLPD-ELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLH  499 (666)
T ss_pred             hhhhheeeeccc-cCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcc
Confidence            987654433222 123457899999999999998433  4788999999999999999873       34455 479999


Q ss_pred             cCceEEEcCCCcEEEecccCCceee-cCeEeecC
Q 027096          195 TGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       195 TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                      |||+|++|+||.++|.||.||+||+ +|++|+|+
T Consensus       500 TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~  533 (666)
T PLN02614        500 TGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVE  533 (666)
T ss_pred             cceEEEEcCCCCEEEEEcchhceecCCCeeecHH
Confidence            9999999999999999999999996 79999985

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1e-35  Score=252.04  Aligned_cols=220  Identities=21%  Similarity=0.276  Sum_probs=189.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++++|++++.+|++|..++...++.++..|+++++.+.+++..+++.+++++++++.++|+++..+..........
T Consensus       229 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~  308 (538)
T TIGR03208       229 ERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAP  308 (538)
T ss_pred             hhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCC
Confidence            45678899999999999999998777899999999999998899999999999999999999999999888765444456


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.++++|+++++++.+++.+.+ +.++++.||+||++.+...............+|+|+++++++++| +++++++
T Consensus       309 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~  386 (538)
T TIGR03208       309 VPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLS  386 (538)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCc
Confidence            78999999999999999999999988 689999999999988765443222122235789999999999999 7889999


Q ss_pred             CCCceEEEEecCcccccccc-----cccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRATKL-----TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~~~-----~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+++++.++..+..     ..+.++||+|||+++++++|.++++||.||+||.+|.+|+|.
T Consensus       387 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~  453 (538)
T TIGR03208       387 QGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVV  453 (538)
T ss_pred             CCCCcEEEEecCcccccccCCcccccccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHH
Confidence            99999999999987753221     223578999999999999999999999999999999999985

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=5.7e-36  Score=251.45  Aligned_cols=219  Identities=17%  Similarity=0.153  Sum_probs=178.0

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC--CC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VK   82 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~   82 (228)
                      ..++++++|++++.+|++|..++.. ++.+++.|+++++.+. +++..+++.|+++++|+++++|++++.|++...  ..
T Consensus       153 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~  231 (499)
T PLN03051        153 AHMDIQPGDVVCWPTNLGWMMGPWL-LYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAME  231 (499)
T ss_pred             HhcCCCCCCEEEEccCcceeeehHH-HHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccc
Confidence            3467889999999999999999864 7889999999998874 788999999999999999999999999887543  33


Q ss_pred             CCCCCCceEEEEcccCCCHHHHHHHHHhCC-CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCC
Q 027096           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  161 (228)
Q Consensus        83 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~  161 (228)
                      ..++++||.++++|+++++++.+++++.++ +..+++.||+||++..+....... ....+++|+|.++++++|+| +++
T Consensus       232 ~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~ivd-~~g  309 (499)
T PLN03051        232 GLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQ-PQAPGAFSTASLGTRFVLLN-DNG  309 (499)
T ss_pred             cCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccC-CCCCccccCCCCCceEEEEC-CCC
Confidence            456789999999999999999988777331 378999999999875433222111 22456899999999999999 788


Q ss_pred             CCCCCC--CceEEEEecCccc--ccc-----cccc-c--------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeE
Q 027096          162 KPLPPN--QLGEIWLRGPNMM--RAT-----KLTI-D--------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  223 (228)
Q Consensus       162 ~~~~~g--~~Gel~v~~~~~~--~~~-----~~~~-~--------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~  223 (228)
                      ++++.|  +.|||+++|+.++  ..+     ...+ +        ..+||+|||+|++|+||.++++||.||+||++|+|
T Consensus       310 ~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~  389 (499)
T PLN03051        310 VPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIK  389 (499)
T ss_pred             CCCCCCCCcceEEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEE
Confidence            999888  4799999999763  211     1111 1        12379999999999999999999999999999999


Q ss_pred             eecC
Q 027096          224 VTSN  227 (228)
Q Consensus       224 v~p~  227 (228)
                      |+|.
T Consensus       390 v~p~  393 (499)
T PLN03051        390 TSSV  393 (499)
T ss_pred             CCHH
Confidence            9984

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=7.3e-36  Score=257.06  Aligned_cols=221  Identities=22%  Similarity=0.245  Sum_probs=183.6

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC-
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-   80 (228)
                      ..++++++|++++.+|++|+.++...++.+|+.|+++++.++    +++..+++.++++++|+++++|++++.|.+... 
T Consensus       267 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  346 (628)
T TIGR02316       267 AIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA  346 (628)
T ss_pred             HhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc
Confidence            457889999999999999999987668899999999999763    478999999999999999999999998877543 


Q ss_pred             -CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCC-C-CCCCCCCccccCCCceEEEEe
Q 027096           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF-A-GSRNIGSAGALAPGVEALIVS  157 (228)
Q Consensus        81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~-~-~~~~~~~~g~p~~~~~~~i~d  157 (228)
                       .....+++||.++++|+++++++.+++++.+ +..+++.||+||++..+...... . .....+++|+|+++++++++|
T Consensus       347 ~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d  425 (628)
T TIGR02316       347 WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD  425 (628)
T ss_pred             ccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEE
Confidence             2345688999999999999999999999988 68899999999998644332211 1 123456889999999999999


Q ss_pred             CCCCCCCCCCCceEEEEecCc---cccc-------cccc---ccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          158 VDTQKPLPPNQLGEIWLRGPN---MMRA-------TKLT---IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       158 ~~~~~~~~~g~~Gel~v~~~~---~~~~-------~~~~---~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                      .+++++++.|+.|||++++|.   .+..       +...   ...++||+|||+|++|+||.++++||+||+||++|++|
T Consensus       426 ~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv  505 (628)
T TIGR02316       426 EATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRL  505 (628)
T ss_pred             CCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEe
Confidence            658999999999999999984   2211       1111   11467999999999999999999999999999999999


Q ss_pred             ecC
Q 027096          225 TSN  227 (228)
Q Consensus       225 ~p~  227 (228)
                      +|.
T Consensus       506 ~~~  508 (628)
T TIGR02316       506 GTR  508 (628)
T ss_pred             CHH
Confidence            984

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1e-35  Score=256.18  Aligned_cols=221  Identities=29%  Similarity=0.384  Sum_probs=185.7

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ..++++++|++++.+|++|+.+....++.+|.+|+++++.+.    +++..+++.++++++|+++++|++++.|.+....
T Consensus       271 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  350 (625)
T TIGR02188       271 YVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDE  350 (625)
T ss_pred             hccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc
Confidence            457889999999999999999876668899999999999753    4799999999999999999999999999876432


Q ss_pred             --CCCCCCCceEEEEcccCCCHHHHHHHHHhCC--CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEe
Q 027096           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  157 (228)
Q Consensus        82 --~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d  157 (228)
                        ....+++||.++++|+++++++.+++.+.++  ++++++.||+||+++.+............+.+|+|+++++++++|
T Consensus       351 ~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d  430 (625)
T TIGR02188       351 WVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD  430 (625)
T ss_pred             ccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC
Confidence              2356789999999999999999999999884  378999999999988765433221223567899999999999999


Q ss_pred             CCCCCCCC-CCCceEEEEecC--ccccc-------ccccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          158 VDTQKPLP-PNQLGEIWLRGP--NMMRA-------TKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       158 ~~~~~~~~-~g~~Gel~v~~~--~~~~~-------~~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                       +++++++ .|+.|||++++|  .++..       +...+  ..+|||+|||++++|++|.++++||+||+||++|++|+
T Consensus       431 -~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~  509 (625)
T TIGR02188       431 -EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLG  509 (625)
T ss_pred             -CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEEC
Confidence             8899999 899999999995  44431       11111  13689999999999999999999999999999999999


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      |.
T Consensus       510 p~  511 (625)
T TIGR02188       510 TA  511 (625)
T ss_pred             HH
Confidence            84

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-35  Score=250.50  Aligned_cols=222  Identities=35%  Similarity=0.565  Sum_probs=194.4

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|.+++...++.++..|+++++.+..++..+++.++++++|+++++|++++.+.+.......
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~  278 (513)
T PRK07656        199 AEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAE  278 (513)
T ss_pred             HHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCC
Confidence            35678899999999999999999988789999999999998888999999999999999999999999999988766666


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC-CCCCCCccccCCCceEEEEeCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~-~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      .++++|.++++|+++++++.+++++.++...+++.||+||++++...+..... .....++|.|+++++++++| +++++
T Consensus       279 ~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~  357 (513)
T PRK07656        279 DLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEE  357 (513)
T ss_pred             CccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCC
Confidence            78899999999999999999999999854489999999999887766543321 12257899999999999999 77899


Q ss_pred             CCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+++++.++..       +...+..++||+|||+++++++|.++++||.||+||++|.+|+|.
T Consensus       358 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~  428 (513)
T PRK07656        358 VPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPA  428 (513)
T ss_pred             CCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHH
Confidence            9999999999999987652       223333478999999999999999999999999999999999874

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-36  Score=260.38  Aligned_cols=212  Identities=23%  Similarity=0.348  Sum_probs=177.0

Q ss_pred             CCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhc--------CCCC
Q 027096           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------GLVK   82 (228)
Q Consensus        11 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~--------~~~~   82 (228)
                      .+.|++++.+|++|++++.. .+.+++.|+++++.+. ++..+++.|+++++|+++++|.+++.+.+.        +...
T Consensus       345 ~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~  422 (746)
T PTZ00342        345 YNPKTHLSYLPISHIYERVI-AYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLK  422 (746)
T ss_pred             CCCCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHH
Confidence            35689999999999999976 6778999999998765 899999999999999999999999988652        1000


Q ss_pred             C----------------------------------CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCc
Q 027096           83 K----------------------------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI  128 (228)
Q Consensus        83 ~----------------------------------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~  128 (228)
                      +                                  ....++|.+++||+++++++.+++++.+ +.++++.||+||+++.
T Consensus       423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~  501 (746)
T PTZ00342        423 RFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGP  501 (746)
T ss_pred             HHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccce
Confidence            0                                  0125899999999999999999999888 7899999999999876


Q ss_pred             eeeccCCCCCCCCCCccccC-CCceEEEEeCCCCCCCCCCCceEEEEecCcccc-------cccccccCCCeEEcCceEE
Q 027096          129 ATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGY  200 (228)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~  200 (228)
                      .+.....  ....+++|.|+ |+++++++|.++....+.+..|||+++||.++.       .+.+.++.+|||+|||+|+
T Consensus       502 ~~~~~~~--~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~  579 (746)
T PTZ00342        502 IFVQHAD--DNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQ  579 (746)
T ss_pred             eeeccCC--CCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEE
Confidence            5543332  34567999998 999999998655544455567999999999887       4556666789999999999


Q ss_pred             EcCCCcEEEecccCCceee-cCeEeecC
Q 027096          201 FDGDGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       201 ~~~~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                      +|+||.+++.||.+|+||. +|++|+|+
T Consensus       580 ~d~dG~l~i~gR~kdlIkls~Ge~I~p~  607 (746)
T PTZ00342        580 INKNGSLTFLDRSKGLVKLSQGEYIETD  607 (746)
T ss_pred             ECCCCeEEEEccCCCeEEeCCCEEEchH
Confidence            9999999999999999996 89999985

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.8e-36  Score=252.88  Aligned_cols=219  Identities=31%  Similarity=0.520  Sum_probs=191.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++++|++++.+|++|..|+...++.++.+|+++++.+.+++..+++.++++++|++.++|++++.+...+......
T Consensus       224 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~  303 (546)
T PRK08314        224 LWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERD  303 (546)
T ss_pred             HhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccC
Confidence            45678899999999999999999887889999999999999899999999999999999999999999998776555667


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.++++|+++++++.+++.+.+ +.++++.||+||++.........  .....++|.|+++++++++|++++++++
T Consensus       304 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~~~~~  380 (546)
T PRK08314        304 LSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETLEELP  380 (546)
T ss_pred             chhhheeeeccccCCHHHHHHHHHHc-CCcEEecccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCCcCCC
Confidence            78999999999999999999999988 68999999999998766544322  2245689999999999999978899999


Q ss_pred             CCCceEEEEecCccccccc-------ccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRATK-------LTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~~-------~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+++++.++..+.       ..+   +.++||+|||+++++++|.+++.||.||+||++|.+|+|+
T Consensus       381 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~  452 (546)
T PRK08314        381 PGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPA  452 (546)
T ss_pred             CCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHH
Confidence            9999999999998776322       111   2346999999999999999999999999999999999985

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.4e-36  Score=251.32  Aligned_cols=220  Identities=33%  Similarity=0.470  Sum_probs=193.6

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++++|++++.+|++|..++...++.++..|+++++.+..++..+++.++++++|++.++|+++..+.+........
T Consensus       205 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  284 (523)
T PRK08316        205 VAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRD  284 (523)
T ss_pred             HHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCC
Confidence            45678999999999999999998776777899999999998889999999999999999999999999998876666667


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.++++|+.+++++.+.+++.+++.++++.||+||++.++............+++|+|+++++++++| +++++++
T Consensus       285 ~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~  363 (523)
T PRK08316        285 LSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVA  363 (523)
T ss_pred             cccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCC
Confidence            889999999999999999999999998899999999999998776544333234457899999999999999 7789999


Q ss_pred             CCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+++|+.++..+       ...+ .++||+|||+|+++++|.+++.||.||+||++|.+|+|.
T Consensus       364 ~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~  431 (523)
T PRK08316        364 PGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASR  431 (523)
T ss_pred             CCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHH
Confidence            999999999999877522       2233 478999999999999999999999999999999999985

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-35  Score=246.89  Aligned_cols=215  Identities=21%  Similarity=0.357  Sum_probs=186.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++++|+++...|++|..++.. ++.+++.|+++++.+.+++..+++.++++++|++.++|++++.+.+...    .
T Consensus       177 ~~~~~~~~d~~~~~~~l~~~~~l~~-~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~  251 (487)
T PRK07638        177 HDFHMKREDSVLIAGTLVHSLFLYG-AISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----V  251 (487)
T ss_pred             HhcCcCCCCEEEEeecchHHHHHHH-HHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----c
Confidence            4567889999999999999988765 7889999999999999999999999999999999999999999987632    1


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ..+.+.++++|+++++++.+++.+.+++.++++.||+||++.++..... .......++|+|+++++++|+| +++++++
T Consensus       252 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~  329 (487)
T PRK07638        252 IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDE-ESERRPNSVGRPFHNVQVRICN-EAGEEVQ  329 (487)
T ss_pred             CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEeccc-ccCCCCCCCCcccCCcEEEEEC-CCCCCCC
Confidence            3456677889999999999999999999999999999999987665442 2234557899999999999999 7899999


Q ss_pred             CCCceEEEEecCccccccccc------ccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRATKLT------IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~~~~------~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+++++.++..+...      ...+|||+|||++++|++|.+++.||.+|+||++|.+|+|.
T Consensus       330 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~  397 (487)
T PRK07638        330 KGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPE  397 (487)
T ss_pred             CCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHH
Confidence            999999999999887633221      23578999999999999999999999999999999999984

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-35  Score=254.66  Aligned_cols=221  Identities=30%  Similarity=0.415  Sum_probs=185.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ..++++++|++++.+|++|..++...++.+|++|+++++.++    +++..+++.|+++++|++.++|++++.+++....
T Consensus       280 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  359 (637)
T PRK00174        280 YVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDE  359 (637)
T ss_pred             hccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCc
Confidence            456889999999999999999987778899999999998753    4799999999999999999999999999876432


Q ss_pred             --CCCCCCCceEEEEcccCCCHHHHHHHHHhCCC--CeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEe
Q 027096           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  157 (228)
Q Consensus        82 --~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~--~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d  157 (228)
                        ....+++||.++++|+++++++.+++.+.++.  +++++.||+||++.++............+++|+|+++++++++|
T Consensus       360 ~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d  439 (637)
T PRK00174        360 HPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD  439 (637)
T ss_pred             ccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC
Confidence              23567899999999999999999999998743  78999999999988765432221123456899999999999999


Q ss_pred             CCCCCCCCCCCceEEEEecC--cccccc-------cccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096          158 VDTQKPLPPNQLGEIWLRGP--NMMRAT-------KLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       158 ~~~~~~~~~g~~Gel~v~~~--~~~~~~-------~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                       +++++++.|+.|||+++++  .++..+       ...+  ..+|||+|||+++++++|.++++||.||+||++|++|+|
T Consensus       440 -~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p  518 (637)
T PRK00174        440 -EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGT  518 (637)
T ss_pred             -CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECH
Confidence             8899999999999999995  444421       1111  247899999999999999999999999999999999998


Q ss_pred             C
Q 027096          227 N  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       519 ~  519 (637)
T PRK00174        519 A  519 (637)
T ss_pred             H
Confidence            4

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-35  Score=248.38  Aligned_cols=220  Identities=30%  Similarity=0.457  Sum_probs=192.0

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++.+|+++...|++|.+++....+.+++.|+++++.+.+++..+++.++++++|.++++|+++..++.........
T Consensus       183 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~  262 (497)
T PRK06145        183 IALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFD  262 (497)
T ss_pred             HhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccc
Confidence            44678999999999999999998776778899999999998899999999999999999999999999998876655666


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.+++||+++++++.+++.+.|++.++++.||+||++..+............+++|+|+++++++++| +++++++
T Consensus       263 ~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~  341 (497)
T PRK06145        263 LDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLP  341 (497)
T ss_pred             cccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCCCC
Confidence            789999999999999999999999998899999999999998655433222233456899999999999999 7788999


Q ss_pred             CCCceEEEEecCccccccc-------ccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRATK-------LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~~-------~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+++|+.++..+.       ..+ .++||+|||+++++++|.++++||.||+||++|.+|+|.
T Consensus       342 ~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~  409 (497)
T PRK06145        342 PNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASS  409 (497)
T ss_pred             CCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHH
Confidence            9999999999998876332       223 368999999999999999999999999999999999984

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-35  Score=249.86  Aligned_cols=216  Identities=24%  Similarity=0.375  Sum_probs=186.0

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC--CCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~   84 (228)
                      .+..+++|++++.+|++|.+++.. ++.++..|+++++.+.+++..+++.|+++++|++..+|++++.+++....  ...
T Consensus       231 ~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~  309 (537)
T PRK13382        231 RTPWRAEEPTVIVAPMFHAWGFSQ-LVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRY  309 (537)
T ss_pred             hhCCCCCCeEEEecChHhhhHHHH-HHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccC
Confidence            456778999999999999999865 78899999999998889999999999999999999999999999875432  233


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      ++.++|.++++|+++++++.+.+.+.+ +..+++.||+||++.++..+... .....+++|+|+++++++++| ++++++
T Consensus       310 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~~~~~~i~d-~~~~~~  386 (537)
T PRK13382        310 SGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMIATATPAD-LRAAPDTAGRPAEGTEIRILD-QDFREV  386 (537)
T ss_pred             CccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcceecChhH-hccCCCCccccCcCcEEEEEC-CCCCCC
Confidence            456899999999999999999999998 56799999999999876544322 123557899999999999999 788999


Q ss_pred             CCCCceEEEEecCcccccccc----cccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRATKL----TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~~~----~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|+.|||+++++.++..+..    .+ .+|||+|||+++++++|.+++.||.||+||.+|.+|+|.
T Consensus       387 ~~g~~GEl~v~g~~~~~gY~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~  452 (537)
T PRK13382        387 PTGEVGTIFVRNDTQFDGYTSGSTKDF-HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPI  452 (537)
T ss_pred             CCCCeeEEEEEcCCcccCccccchhhc-cCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHH
Confidence            999999999999988774421    12 368999999999999999999999999999999999984

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.4e-36  Score=256.76  Aligned_cols=217  Identities=24%  Similarity=0.308  Sum_probs=179.8

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC--CC----HHHHHHHHHhcCceEEEechHHHHHHHhcCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FD----LEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~----~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~   80 (228)
                      .+....+|++++.+|++|+.+... ++.+|..|+++++.++  +.    +..+++.++++++|++.++|++++.|++...
T Consensus       290 ~~~~~~~d~~~~~~~~~w~~~~~~-~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  368 (647)
T PTZ00237        290 IIEKDIPTVVFSHSSIGWVSFHGF-LYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP  368 (647)
T ss_pred             hcCCCCCcEEEEcCCCceEeeHHH-HHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCc
Confidence            356777899999999999976654 7899999999999764  12    6889999999999999999999999987432


Q ss_pred             -----CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEE
Q 027096           81 -----VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALI  155 (228)
Q Consensus        81 -----~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i  155 (228)
                           ....++++||.++++|+++++++.+++++.+ +.++++.||+||++........ ......+++|+|++++++++
T Consensus       369 ~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i  446 (647)
T PTZ00237        369 EATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSI  446 (647)
T ss_pred             cccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhccCC-CCCCCCCCCccCcCCceEEE
Confidence                 1335678999999999999999999999988 6899999999999876543322 11233478999999999999


Q ss_pred             EeCCCCCCCCCCCceEEEEecCc---ccc-------ccccccc-CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          156 VSVDTQKPLPPNQLGEIWLRGPN---MMR-------ATKLTID-KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       156 ~d~~~~~~~~~g~~Gel~v~~~~---~~~-------~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                      +| ++|++++.|+.|||++++|.   ++.       .+...+. .+|||+|||+|++|++|.++++||+||+||++|+||
T Consensus       447 ~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI  525 (647)
T PTZ00237        447 LS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKV  525 (647)
T ss_pred             EC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEe
Confidence            99 78999999999999999873   333       1222332 268999999999999999999999999999999999


Q ss_pred             ecC
Q 027096          225 TSN  227 (228)
Q Consensus       225 ~p~  227 (228)
                      +|.
T Consensus       526 ~p~  528 (647)
T PTZ00237        526 QLN  528 (647)
T ss_pred             CHH
Confidence            984

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.3e-35  Score=270.54  Aligned_cols=222  Identities=31%  Similarity=0.441  Sum_probs=191.9

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      .+.++.+++|++++.+|++|..++...++.+++.|+++++.+ .+++..+++.++++++|++.++|++++.+.+.....+
T Consensus       815 ~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  894 (1146)
T PRK08633        815 SDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHP  894 (1146)
T ss_pred             HHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCc
Confidence            345778899999999999999999877889999999998876 4789999999999999999999999999988766566


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC--------CCCCCCCccccCCCceEEE
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--------GSRNIGSAGALAPGVEALI  155 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~--------~~~~~~~~g~p~~~~~~~i  155 (228)
                      ..++++|.+++||+++++++.+++++.+ +.++++.||+||+++++.......        .....+++|+|++++++++
T Consensus       895 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i  973 (1146)
T PRK08633        895 LMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRI  973 (1146)
T ss_pred             ccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEE
Confidence            6788999999999999999999999988 689999999999988765432211        0124568999999999999


Q ss_pred             EeCCCCCCCCCCCceEEEEecCccccccc-------cccc---CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          156 VSVDTQKPLPPNQLGEIWLRGPNMMRATK-------LTID---KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       156 ~d~~~~~~~~~g~~Gel~v~~~~~~~~~~-------~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      +|++++++++.|+.|||+++|+.++..+.       +.+.   .++||+|||++++|+||.+++.||.||+||++|++|+
T Consensus       974 ~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~ 1053 (1146)
T PRK08633        974 VDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVP 1053 (1146)
T ss_pred             EcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEEC
Confidence            99888999999999999999998876322       2221   2389999999999999999999999999999999999


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      |.
T Consensus      1054 ~~ 1055 (1146)
T PRK08633       1054 LG 1055 (1146)
T ss_pred             HH
Confidence            84

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.5e-35  Score=250.75  Aligned_cols=223  Identities=28%  Similarity=0.453  Sum_probs=192.7

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEE-cCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~-~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      ...++++++|+++..+|++|..++...++.++..|+++++ ...+++..+++.++++++|.++++|+++..++.......
T Consensus       232 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~  311 (559)
T PRK08315        232 GEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFAR  311 (559)
T ss_pred             HHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCC
Confidence            3567889999999999999999998888999999999985 456899999999999999999999999998887766556


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC-CCCCCCCccccCCCceEEEEeCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQK  162 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~i~d~~~~~  162 (228)
                      ..++++|.++++|+++++++.+++++.++..++++.||+||++.++....... ......++|+|+++++++++|+++++
T Consensus       312 ~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~  391 (559)
T PRK08315        312 FDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGE  391 (559)
T ss_pred             CCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCC
Confidence            67889999999999999999999999986677999999999988765543322 12345789999999999999976699


Q ss_pred             CCCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          163 PLPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       163 ~~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.|+.|||+|+++.++..+       ...+..++||+|||+++++++|.++++||.||+||.+|.+|+|.
T Consensus       392 ~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~  463 (559)
T PRK08315        392 TVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPR  463 (559)
T ss_pred             cCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHH
Confidence            999999999999999877632       23334678999999999999999999999999999999999874

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1e-35  Score=256.98  Aligned_cols=217  Identities=28%  Similarity=0.408  Sum_probs=177.6

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC-----
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-----   80 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-----   80 (228)
                      ..+++.++|++++.+|++|++++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+.+...     
T Consensus       255 ~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~  332 (651)
T PLN02736        255 LSTKFYPSDVHISYLPLAHIYERVN-QIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKE  332 (651)
T ss_pred             hccCCCCCCEEEEeCCHHHHHHHHH-HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhc
Confidence            4567889999999999999999986 7788999999988764 78899999999999999999999987754310     


Q ss_pred             -----------------------CCC-------------CCC-CCceEEEEcccCCCHHHHHHHHHhCCCCeEEeccccc
Q 027096           81 -----------------------VKK-------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT  123 (228)
Q Consensus        81 -----------------------~~~-------------~~~-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~t  123 (228)
                                             ...             ..+ .++|.+++||+++++++.+++++.+ +.++++.||+|
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~T  411 (651)
T PLN02736        333 SGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMT  411 (651)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechH
Confidence                                   000             001 4799999999999999999999888 68899999999


Q ss_pred             ccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC---CCCCCceEEEEecCccccc-------ccccccCCCeE
Q 027096          124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP---LPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWV  193 (228)
Q Consensus       124 E~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~---~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~  193 (228)
                      |+++.++.....  ....+++|+|+|+++++++|.+++..   ..+++.|||+++||.++..       +...++.+|||
T Consensus       412 E~~~~~~~~~~~--~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~  489 (651)
T PLN02736        412 ETSCVISGMDEG--DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWL  489 (651)
T ss_pred             HhchheeccCCC--CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCe
Confidence            998766543322  23567899999999999998443322   2234569999999999873       34455568999


Q ss_pred             EcCceEEEcCCCcEEEecccCCceee-cCeEeecC
Q 027096          194 HTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       194 ~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                      +|||+|++|+||.++++||.||+||+ +|++|+|+
T Consensus       490 ~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~  524 (651)
T PLN02736        490 HTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPE  524 (651)
T ss_pred             eccceEEEcCCCcEEEEEechhheEcCCCcEechH
Confidence            99999999999999999999999997 79999985

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-35  Score=255.45  Aligned_cols=216  Identities=19%  Similarity=0.267  Sum_probs=186.5

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      .+++++.|++++.+|++|..++...++.+|..|+++++.+ .+++..+...++++++|+++++|+++..+.+...  ...
T Consensus       181 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~  258 (705)
T PRK06060        181 ALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDS  258 (705)
T ss_pred             hhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--ccc
Confidence            4678899999999999999988766889999999999986 4788889999999999999999999999887542  234


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.++++|+++++++.+++.+.|++.+++|.||+||++.++......  ....+++|+|+++++++++| +++++++
T Consensus       259 ~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d-~~g~~~~  335 (705)
T PRK06060        259 FRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVA-PDGTTAG  335 (705)
T ss_pred             ccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCC--CCCcCcccccCCCcEEEEEC-CCCCCCC
Confidence            67899999999999999999999999889999999999998765443221  22456899999999999999 7789999


Q ss_pred             CCCceEEEEecCcccccccc----cccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRATKL----TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~~~----~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+|+|+.++..+..    ....++||+|||+++++++|.++++||.||+||++|++|+|.
T Consensus       336 ~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~  401 (705)
T PRK06060        336 PGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPR  401 (705)
T ss_pred             CCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHH
Confidence            99999999999998874322    223578999999999999999999999999999999999984

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.4e-35  Score=249.24  Aligned_cols=218  Identities=30%  Similarity=0.424  Sum_probs=186.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC--CC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VK   82 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~   82 (228)
                      ..++++++|++++..|++|..|+...++.++..|+++++.+ .+++..+++.++++++|+++++|++++.+.+...  ..
T Consensus       239 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  318 (570)
T PRK04319        239 YVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVK  318 (570)
T ss_pred             HhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccc
Confidence            45778899999999999999998777899999999998875 5899999999999999999999999999987542  23


Q ss_pred             CCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 027096           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  162 (228)
Q Consensus        83 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~  162 (228)
                      ...++++|.++++|+++++++.+++++.+ +.++++.||+||++.++...... .....+++|+|+++++++++| ++++
T Consensus       319 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d-~~~~  395 (570)
T PRK04319        319 KYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVD-DQGN  395 (570)
T ss_pred             cCCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEEC-CCCC
Confidence            35678999999999999999999999988 68899999999998765443222 123457899999999999999 7788


Q ss_pred             CCCCCCceEEEEec--Ccccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          163 PLPPNQLGEIWLRG--PNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       163 ~~~~g~~Gel~v~~--~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.|+.|||++++  +.++.       .+...+ .+|||+|||+++++++|.++++||.||+||.+|++|+|.
T Consensus       396 ~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~-~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~  468 (570)
T PRK04319        396 ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPF  468 (570)
T ss_pred             CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhh-cCCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHH
Confidence            89999999999997  55554       223333 378999999999999999999999999999999999985

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=6.7e-35  Score=246.58  Aligned_cols=219  Identities=26%  Similarity=0.380  Sum_probs=187.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ..+.++++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|+++.+|++++.+.+.......
T Consensus       217 ~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~  296 (527)
T TIGR02275       217 EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRY  296 (527)
T ss_pred             hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCC
Confidence            4567889999999999999998865 367889999999998888999999999999999999999999999887665566


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccC-CCceEEEEeCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKP  163 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~~~~~  163 (228)
                      .++++|.+++||+++++++.+++.+.+ +.++++.||+||++...... ........+++|+|+ ++.+++++| +++++
T Consensus       297 ~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~  373 (527)
T TIGR02275       297 DLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTRL-DDPAEIIFTTQGRPMSPDDEVRVVD-DHGNP  373 (527)
T ss_pred             CccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccCC-CCccccccccCCCCCCCCceEEEEC-CCCCC
Confidence            788999999999999999999999988 78999999999965433221 111123446789999 578999999 78899


Q ss_pred             CCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+++|+.++..       +...++.++||+|||+++++++|++++.||.||+||++|.+|+|.
T Consensus       374 ~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~  444 (527)
T TIGR02275       374 VAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAE  444 (527)
T ss_pred             CCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHH
Confidence            9999999999999998863       233455689999999999999999999999999999999999985

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=7.3e-35  Score=247.31  Aligned_cols=216  Identities=41%  Similarity=0.738  Sum_probs=184.8

Q ss_pred             CCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCC--Cc
Q 027096           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS--SL   89 (228)
Q Consensus        12 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~--~l   89 (228)
                      ..++.+.++|++|.+++...++.+|..|+++++.+.+++..+++.++++++|.+.++|+++..+.+........+.  .+
T Consensus       226 ~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l  305 (546)
T PLN02330        226 GQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKL  305 (546)
T ss_pred             CceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchhee
Confidence            3468999999999999887688999999999999999999999999999999999999999999886544444444  47


Q ss_pred             eEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 027096           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (228)
Q Consensus        90 r~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~  166 (228)
                      |.++++|+++++++.+++.+.|++.++++.||+||++++........   ......++|.|+++++++++|++++++++.
T Consensus       306 ~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~  385 (546)
T PLN02330        306 QAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPK  385 (546)
T ss_pred             eeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCC
Confidence            89999999999999999999998899999999999987654332111   112345799999999999999888899999


Q ss_pred             CCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          167 NQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       167 g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |+.|||+++|+.++..       +...++.+|||+|||++++++||.+++.||.||+||++|++|+|.
T Consensus       386 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~  453 (546)
T PLN02330        386 NTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPA  453 (546)
T ss_pred             CCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHH
Confidence            9999999999987762       233445689999999999999999999999999999999999985

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.9e-35  Score=254.21  Aligned_cols=213  Identities=27%  Similarity=0.429  Sum_probs=169.8

Q ss_pred             CCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcC----------
Q 027096           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG----------   79 (228)
Q Consensus        10 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~----------   79 (228)
                      ++++|++++.+|++|+++... .+.+++.|+++++.+ +++..+++.|+++++|+++++|++++.+.+..          
T Consensus       263 ~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  340 (660)
T PLN02861        263 ATEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGML  340 (660)
T ss_pred             CCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHH
Confidence            468899999999999999876 556899999998874 58999999999999999999999999886410          


Q ss_pred             ---------------------------CCCCC-------CC-CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccc
Q 027096           80 ---------------------------LVKKF-------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE  124 (228)
Q Consensus        80 ---------------------------~~~~~-------~~-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE  124 (228)
                                                 .....       .+ .++|.+++||+++++++.+ +.+.++...+++.||+||
T Consensus       341 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE  419 (660)
T PLN02861        341 RKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTE  419 (660)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhh
Confidence                                       00000       11 4789999999999999854 666664567999999999


Q ss_pred             cCCceeeccCCCCCCCCCCccccCCCceEEEEeC-CCC-CCCCCCCceEEEEecCccccc-------ccccccCCCeEEc
Q 027096          125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQ-KPLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHT  195 (228)
Q Consensus       125 ~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~-~~~-~~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~T  195 (228)
                      +++.+....... ....+++|+|+++++++++|. +.| ...+.++.|||+++|+.++..       +.+.+ .+|||+|
T Consensus       420 ~~~~~~~~~~~~-~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~T  497 (660)
T PLN02861        420 SCGGCFTSIANV-FSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHT  497 (660)
T ss_pred             hhhceeeccccc-CCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCccc
Confidence            987654432221 224578999999999999983 334 344556789999999998873       34445 4799999


Q ss_pred             CceEEEcCCCcEEEecccCCceee-cCeEeecC
Q 027096          196 GDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       196 GD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                      ||+|++|+||.++|.||+||+||. +|++|+|+
T Consensus       498 GDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~  530 (660)
T PLN02861        498 GDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVE  530 (660)
T ss_pred             CceEEECCCCcEEEEeccccceEcCCCeEEcHH
Confidence            999999999999999999999997 89999985

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-34  Score=244.18  Aligned_cols=217  Identities=23%  Similarity=0.303  Sum_probs=186.4

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC--CCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~   84 (228)
                      .++++++|+++..+|++|.+++.. ++.++..|+++++.+.+++..+++.++++++|.++++|+++..+.+....  ...
T Consensus       211 ~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  289 (516)
T PRK13383        211 RTRLRTGSRISVAMPMFHGLGLGM-LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARN  289 (516)
T ss_pred             hhccCCCCeEEEecCCcchhhHHH-HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccC
Confidence            456789999999999999999976 78889999999998889999999999999999999999999999875432  223


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      .++++|.++++|+++++++.+++.+.+ +..+++.||+||++..+...... ......++|+|+++++++++| ++++++
T Consensus       290 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d-~~~~~~  366 (516)
T PRK13383        290 PLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATPAD-LRDAPETVGKPVAGCPVRILD-RNNRPV  366 (516)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceeccccc-cccCCCcccCCCCCcEEEEEC-CCCCCC
Confidence            568899999999999999999999998 67899999999998765443322 123456899999999999999 778999


Q ss_pred             CCCCceEEEEecCccccccccc---ccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRATKLT---IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~~~~---~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|+.|||+++|+..+..+...   ...+|||+|||+++++++|.+++.||.||+||++|.+|+|.
T Consensus       367 ~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~  432 (516)
T PRK13383        367 GPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPR  432 (516)
T ss_pred             CCCCceEEEEecCcccccccCCchhheecCceecceeEEEcCCccEEEeccccceEEECCEEECHH
Confidence            9999999999999887633221   12468999999999999999999999999999999999985

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.5e-34  Score=243.11  Aligned_cols=218  Identities=31%  Similarity=0.468  Sum_probs=189.5

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|..++...++.+++.|+++++.+..++..+++.+.  ++|.+..+|+++..+++.......
T Consensus       189 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~  266 (504)
T PRK07514        189 VDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTRE  266 (504)
T ss_pred             HHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCcc
Confidence            345778999999999999999998877889999999999999899999999994  799999999999999887666666


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      .++++|.++.||+++++++.+.+.+.+ +.++++.||+||++........  ......++|.|+++++++++|+++++++
T Consensus       267 ~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~G~~~~~~~v~i~d~~~~~~~  343 (504)
T PRK07514        267 AAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTSNPYD--GERRAGTVGFPLPGVSLRVTDPETGAEL  343 (504)
T ss_pred             cccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccccccccCCcc--ccccCcccccCCCCcEEEEEECCCCCCC
Confidence            788999999999999999999999988 6789999999999865543221  1233468999999999999998889999


Q ss_pred             CCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|+.|||+++++.++..       +...+..++||+|||+++++++|.+++.||.||+||++|.+|+|.
T Consensus       344 ~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~  413 (504)
T PRK07514        344 PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPK  413 (504)
T ss_pred             CCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHH
Confidence            999999999999988762       233444578999999999999999999999999999999999984

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-34  Score=248.82  Aligned_cols=221  Identities=24%  Similarity=0.330  Sum_probs=182.2

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC-
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-   80 (228)
                      ..++++++|++++.+|++|..+....++.+|+.|+++++.++    .++..+++.++++++|+++++|++++.+.+... 
T Consensus       268 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  347 (629)
T PRK10524        268 TIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA  347 (629)
T ss_pred             HhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc
Confidence            457889999999999999998877668899999999998763    478999999999999999999999999877532 


Q ss_pred             -CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccC--CCCCCCCCCccccCCCceEEEEe
Q 027096           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS--FAGSRNIGSAGALAPGVEALIVS  157 (228)
Q Consensus        81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~--~~~~~~~~~~g~p~~~~~~~i~d  157 (228)
                       .....+++||.++++|+++++++.+++.+.+ +.++++.||+||++..+.....  .......+++|+|+++++++++|
T Consensus       348 ~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d  426 (629)
T PRK10524        348 LLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLN  426 (629)
T ss_pred             cccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEe
Confidence             2345678999999999999999999999988 6889999999999853322211  11123456899999999999999


Q ss_pred             CCCCCCCCCCCceEEEEecCc---cccc-------ccc---cccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          158 VDTQKPLPPNQLGEIWLRGPN---MMRA-------TKL---TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       158 ~~~~~~~~~g~~Gel~v~~~~---~~~~-------~~~---~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                      .+++++++.|+.|||++++|.   .+..       +..   ....++||+|||+++++++|.++++||.||+||++|.+|
T Consensus       427 ~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri  506 (629)
T PRK10524        427 EVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRL  506 (629)
T ss_pred             CCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEe
Confidence            548999999999999999984   2221       000   111468999999999999999999999999999999999


Q ss_pred             ecC
Q 027096          225 TSN  227 (228)
Q Consensus       225 ~p~  227 (228)
                      +|.
T Consensus       507 ~p~  509 (629)
T PRK10524        507 GTR  509 (629)
T ss_pred             CHH
Confidence            984

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.9e-34  Score=241.29  Aligned_cols=215  Identities=31%  Similarity=0.471  Sum_probs=184.0

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++++|++++.+|++|++++.. ++.++..|+++++.+..++..+++.++++++|++.++|+++..+.+..... ..
T Consensus       175 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~  252 (483)
T PRK03640        175 LNLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TY  252 (483)
T ss_pred             HhcCCCcCcEEEEecCHHHHHHHHH-HHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-cc
Confidence            3467899999999999999999876 789999999999999899999999999999999999999999998654322 33


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ..++|.++++|+++++.+.+.+++.  +.++++.||+||++..+............+++|+|++++++++.+ ++ ++++
T Consensus       253 ~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~~-~~~~  328 (483)
T PRK03640        253 PSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-DG-VVVP  328 (483)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEec-CC-CcCC
Confidence            4689999999999999999998875  789999999999886554433332334567899999999999988 43 7899


Q ss_pred             CCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+++++.++..+       ...+ .++||+|||+++++++|.+++.||+||++|.+|.+|+|.
T Consensus       329 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~  396 (483)
T PRK03640        329 PFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPA  396 (483)
T ss_pred             CCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHH
Confidence            999999999999887632       2223 578999999999999999999999999999999999974

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.5e-34  Score=244.56  Aligned_cols=221  Identities=29%  Similarity=0.477  Sum_probs=190.7

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ..++++++|++++.+|++|..|....++.++..|+++++.. .+++..+++.++++++|+++++|+++..++........
T Consensus       235 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~  314 (558)
T PRK12583        235 ESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNF  314 (558)
T ss_pred             HHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCC
Confidence            45788899999999999999999888899999999999754 57899999999999999999999999888876655556


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC-CCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      .++++|.++++|+++++++.+++.+.++...+.+.||+||++.++....... ......++|+|.+++.++++|+ ++++
T Consensus       315 ~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~-~~~~  393 (558)
T PRK12583        315 DLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDP-DGAT  393 (558)
T ss_pred             CchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECC-CCCC
Confidence            7889999999999999999999999987778999999999998776543221 1234578999999999999995 4899


Q ss_pred             CCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+++++.++..+       ...+..++||+|||+++++++|.+++.||.||+||++|.+|+|.
T Consensus       394 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~  464 (558)
T PRK12583        394 VPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPR  464 (558)
T ss_pred             CCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHH
Confidence            99999999999999877622       22233678999999999999999999999999999999999985

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-34  Score=244.03  Aligned_cols=217  Identities=29%  Similarity=0.472  Sum_probs=186.0

Q ss_pred             cccC-CCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            7 ETAG-ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         7 ~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      .+++ .+++++++.+|++|.+|+.. ++.++..|+++++.+  .+++..+++.++++++|.++++|+++..++.......
T Consensus       209 ~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~  287 (542)
T PRK07786        209 TNGADINSDVGFVGVPLFHIAGIGS-MLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP  287 (542)
T ss_pred             hcCCCCCCceEEEecchHHHHHHHH-HHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc
Confidence            3455 57889999999999999866 889999999999865  5799999999999999999999999999987654333


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      .. .++|.+++||+++++++.+++.+.|++.++++.||+||++.+..............++|+|++++.++++| +++++
T Consensus       288 ~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~  365 (542)
T PRK07786        288 RD-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMND  365 (542)
T ss_pred             cC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCC
Confidence            22 36999999999999999999999998999999999999998766544433334567899999999999999 78899


Q ss_pred             CCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+++|+.++..+       ...+ .++||+|||+++++++|.++++||.||+||++|.+|+|.
T Consensus       366 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~  435 (542)
T PRK07786        366 VPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCA  435 (542)
T ss_pred             CcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEEeCCEEECHH
Confidence            99999999999999887622       2233 468999999999999999999999999999999999984

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.5e-34  Score=244.13  Aligned_cols=219  Identities=28%  Similarity=0.396  Sum_probs=188.1

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++++|++++.+|++|.+++...++.+++.|+++++.+.+++..+++.+++++++.++.+|+.+..++.........
T Consensus       221 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~  300 (547)
T PRK06087        221 ARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPAD  300 (547)
T ss_pred             HhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCC
Confidence            44678899999999999999998887899999999999999899999999999999999998888887777765555567


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.+++||+++++++.+.+.+.  ++++++.||+||++.+..............++|.|+++++++++| +++++++
T Consensus       301 ~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~  377 (547)
T PRK06087        301 LSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLP  377 (547)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCc
Confidence            7899999999999999999988775  789999999999988765433221122345789999999999999 8889999


Q ss_pred             CCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+++|+.++..+       ...++.++||+|||+++++++|.++++||.||+|+.+|.+|+|.
T Consensus       378 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~  446 (547)
T PRK06087        378 PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSR  446 (547)
T ss_pred             CCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHH
Confidence            999999999999888632       23334578999999999999999999999999999999999985

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-34  Score=240.02  Aligned_cols=218  Identities=27%  Similarity=0.431  Sum_probs=184.9

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHH--hcCceEEEechHHHHHHHhcCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIE--KHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      .+.+.++|++++.+|++|..++...++.++..|+++++.+.+++...+..+.  ++++|+++++|+++..+.+.......
T Consensus       170 ~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~  249 (488)
T PRK09088        170 LGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAA  249 (488)
T ss_pred             hhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCcc
Confidence            4567889999999999999999887888999999999988889999988886  47899999999999999876554555


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCC-CCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF-AGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~-~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      .++++|.+++||++++.+..+++.+.  +.++++.||+||++.+....... ......+++|.|.++++++++| +++++
T Consensus       250 ~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~  326 (488)
T PRK09088        250 ALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGND  326 (488)
T ss_pred             ccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCC
Confidence            67899999999999999998888765  68899999999998765322111 1123456899999999999999 77899


Q ss_pred             CCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+++++.++..+       ...+..+|||+|||+++++++|.+++.||.||+||.+|.+|+|+
T Consensus       327 ~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~  397 (488)
T PRK09088        327 CPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPA  397 (488)
T ss_pred             CcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHH
Confidence            99999999999999887632       23344589999999999999999999999999999999999985

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-34  Score=244.71  Aligned_cols=213  Identities=32%  Similarity=0.496  Sum_probs=186.3

Q ss_pred             CCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCCceE
Q 027096           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (228)
Q Consensus        12 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~   91 (228)
                      .+|++++.+|++|.+|+...++.++..|+++++.+.++++.+++.++++++|++.++|++++.+.+........++++|.
T Consensus       261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~  340 (573)
T PRK05605        261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRN  340 (573)
T ss_pred             CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccE
Confidence            47899999999999998877888899999999998889999999999999999999999999999877666677889999


Q ss_pred             EEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCC-CCCCCCCCce
Q 027096           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPLPPNQLG  170 (228)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~-~~~~~~g~~G  170 (228)
                      ++++|+++++++.+++.+.+ +.++++.||+||+++++....... ....+++|+|++++.++++|+++ +++++.|+.|
T Consensus       341 i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~G  418 (573)
T PRK05605        341 AFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSD-DRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEG  418 (573)
T ss_pred             EEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCccc-CCcCCccccCCCCCEEEEEcCCCCCccCCCCCee
Confidence            99999999999999999887 688999999999998766543322 23457899999999999999665 6899999999


Q ss_pred             EEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          171 EIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       171 el~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ||+++++.++..+       ...+ .+|||+|||+++++++|.+++.||.||+||.+|.+|+|+
T Consensus       419 el~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~  481 (573)
T PRK05605        419 ELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPA  481 (573)
T ss_pred             EEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHH
Confidence            9999998877632       2233 356999999999999999999999999999999999985

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-34  Score=238.75  Aligned_cols=217  Identities=28%  Similarity=0.421  Sum_probs=184.7

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...+++.++|++++.+|++|..|+...++.++..|+++++.+.+++..+++.++ ++++.++++|+++..+.+... ...
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~  238 (471)
T PRK07787        161 AEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AAR  238 (471)
T ss_pred             HHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-ccc
Confidence            355778899999999999999999888999999999999998899999999999 999999999999999987533 234


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      .++++|.++.||+++++++.+++.+.+ +.++++.||+||++.........  ....+++|+|+++++++++| ++++++
T Consensus       239 ~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~g~~~~i~d-~~~~~~  314 (471)
T PRK07787        239 ALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTRADG--ERRPGWVGLPLAGVETRLVD-EDGGPV  314 (471)
T ss_pred             cccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecCCCC--cccCCcccccCCCcEEEEEC-CCCCCC
Confidence            567899999999999999999999988 68899999999998754433221  23456899999999999999 667887


Q ss_pred             C-CCC-ceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEeccc-CCceeecCeEeecC
Q 027096          165 P-PNQ-LGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI-KELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~-~g~-~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~-~d~i~~~G~~v~p~  227 (228)
                      + .|+ .|||+++|+.++..       +...+..++||+|||++++++||.++++||. ||++|.+|.+|+|+
T Consensus       315 ~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~  387 (471)
T PRK07787        315 PHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAG  387 (471)
T ss_pred             CCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHH
Confidence            6 344 79999999987762       3344445789999999999999999999996 89999999999985

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-34  Score=241.52  Aligned_cols=217  Identities=34%  Similarity=0.516  Sum_probs=187.8

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      +.+++.++|++++.+|++|.+++.  ++.++++|+++++.+.+++..+++.++++++|+++++|+++..+++........
T Consensus       202 ~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  279 (524)
T PRK06188        202 AEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRD  279 (524)
T ss_pred             hhcCCCcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCC
Confidence            457788999999999999998874  578899999999999999999999999999999999999999999887666677


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC----CCCCCCCccccCCCceEEEEeCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA----GSRNIGSAGALAPGVEALIVSVDTQ  161 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~----~~~~~~~~g~p~~~~~~~i~d~~~~  161 (228)
                      ++++|.+++||++++++..+.+.+.+ +..+++.||+||++..+.......    ......++|+|+++++++++| +++
T Consensus       280 l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~  357 (524)
T PRK06188        280 LSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDG  357 (524)
T ss_pred             CcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCC
Confidence            88999999999999999999998888 577999999999976655433221    123456789999999999999 678


Q ss_pred             CCCCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          162 KPLPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       162 ~~~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++++.|+.|||+++++.++..+       ...+ .+|||+|||+++++++|.+++.||.||+|+++|.+|+|+
T Consensus       358 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~  429 (524)
T PRK06188        358 REVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPR  429 (524)
T ss_pred             CCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEeccccceecCCEEECHH
Confidence            9999999999999999877522       2223 468999999999999999999999999999999999985

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.3e-34  Score=241.03  Aligned_cols=219  Identities=38%  Similarity=0.575  Sum_probs=190.9

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      .+.++++++|++++.+|++|..++.. .+.++..|+++++.+..++..+++.++++++|.++++|++++.+.+.......
T Consensus       200 ~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~  278 (521)
T PRK06187        200 CAWLKLSRDDVYLVIVPMFHVHAWGL-PYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFV  278 (521)
T ss_pred             HHhhCCCCCCEEEEeCCchHHhhHHH-HHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCcc
Confidence            45678999999999999999999887 45599999999999888999999999999999999999999999988766667


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC----CCCCCCccccCCCceEEEEeCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG----SRNIGSAGALAPGVEALIVSVDT  160 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~----~~~~~~~g~p~~~~~~~i~d~~~  160 (228)
                      .++++|.++++|+++++++.+++.+.+ ++++++.||+||++.+.........    .....++|+|+++++++++| ++
T Consensus       279 ~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~  356 (521)
T PRK06187        279 DFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DD  356 (521)
T ss_pred             CcchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CC
Confidence            788999999999999999999999998 8999999999999887665433221    12567899999999999999 67


Q ss_pred             CCCCCC--CCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          161 QKPLPP--NQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       161 ~~~~~~--g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++.  |+.|||+++++.....       +...+ .++||+|||+++++++|.+++.||.||+||.+|.+|+|.
T Consensus       357 ~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~  431 (521)
T PRK06187        357 GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPR  431 (521)
T ss_pred             CCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHH
Confidence            888888  9999999999887652       22233 456999999999999999999999999999999999974

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4.5e-34  Score=242.74  Aligned_cols=215  Identities=28%  Similarity=0.427  Sum_probs=176.2

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-------CCCHHHHHHHHHhcCceEEEechHHHHHHHh
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-------KFDLEMFLRAIEKHRVTHIWVVPPLILALAK   77 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-------~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~   77 (228)
                      ...++++++|++++.+|++|..+        +..|.++++.+       .+++..+++.|+++++|+++++|++++.+.+
T Consensus       207 ~~~~~~~~~~~~~~~~pl~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~  278 (552)
T PRK09274        207 REDYGIEPGEIDLPTFPLFALFG--------PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGR  278 (552)
T ss_pred             HHHhCCCCCceeeeccCHHHhhh--------hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHH
Confidence            34578899999999999987543        33477877754       3588999999999999999999999999988


Q ss_pred             cCCCCCCCCCCceEEEEcccCCCHHHHHHHHHhCC-CCeEEecccccccCCceeeccCC------C--CCCCCCCccccC
Q 027096           78 HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSF------A--GSRNIGSAGALA  148 (228)
Q Consensus        78 ~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~l~~~yG~tE~g~~~~~~~~~------~--~~~~~~~~g~p~  148 (228)
                      ........++++|.++++|+++++++.+++++.|+ +.++++.||+||++.++......      .  ......++|+|+
T Consensus       279 ~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~  358 (552)
T PRK09274        279 YGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPV  358 (552)
T ss_pred             HhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccC
Confidence            76555567889999999999999999999999996 37999999999998765543211      0  011223689999


Q ss_pred             CCceEEEEeCC--------CCCCCCCCCceEEEEecCcccccccc-------cc--cCCC--eEEcCceEEEcCCCcEEE
Q 027096          149 PGVEALIVSVD--------TQKPLPPNQLGEIWLRGPNMMRATKL-------TI--DKKG--WVHTGDLGYFDGDGQLYV  209 (228)
Q Consensus       149 ~~~~~~i~d~~--------~~~~~~~g~~Gel~v~~~~~~~~~~~-------~~--~~~~--~~~TGD~~~~~~~g~~~~  209 (228)
                      ++++++|+|++        ++++++.|+.|||+++|+.++..+..       .+  +.+|  ||+|||+|++|++|.+++
T Consensus       359 ~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~  438 (552)
T PRK09274        359 DGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWF  438 (552)
T ss_pred             CCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEE
Confidence            99999999842        46788999999999999998863321       11  2355  999999999999999999


Q ss_pred             ecccCCceeecCeEeecC
Q 027096          210 VDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       210 ~GR~~d~i~~~G~~v~p~  227 (228)
                      +||.||+||++|.+|+|+
T Consensus       439 ~GR~~d~i~~~G~~v~p~  456 (552)
T PRK09274        439 CGRKAHRVETAGGTLYTI  456 (552)
T ss_pred             EeccCCeEEECCEEECcH
Confidence            999999999999999985

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.7e-34  Score=241.20  Aligned_cols=211  Identities=28%  Similarity=0.535  Sum_probs=181.8

Q ss_pred             CcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCCceE
Q 027096           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (228)
Q Consensus        13 ~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~   91 (228)
                      .+++++.+|++|.+++...++.++..|.+.++.+ ..++..+++.++++++|.++++|+++..+.+........++++|.
T Consensus       251 ~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~  330 (562)
T PRK05677        251 CEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKL  330 (562)
T ss_pred             ccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceE
Confidence            4688999999999998766778888898877665 468999999999999999999999999998765444455778999


Q ss_pred             EEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceE
Q 027096           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (228)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Ge  171 (228)
                      +++||+++++++.+++++.+ +.++++.||+||++.++......  ....+++|.|+++++++++| +++++++.|+.||
T Consensus       331 v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Ge  406 (562)
T PRK05677        331 TLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGE  406 (562)
T ss_pred             EEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCcc--CCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeE
Confidence            99999999999999999987 78999999999998776544322  23456899999999999999 6789999999999


Q ss_pred             EEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          172 IWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       172 l~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |+++|+.++..       +...+..++||+|||+++++++|.+++.||.+|+||++|.+|+|.
T Consensus       407 l~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~  469 (562)
T PRK05677        407 LCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPN  469 (562)
T ss_pred             EEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHH
Confidence            99999988763       333455689999999999999999999999999999999999985

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=8.5e-34  Score=232.50  Aligned_cols=218  Identities=24%  Similarity=0.323  Sum_probs=184.8

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCC---HHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      .+.++++++|++++..|++|..++.. ++.++..|+++++.+...   +..+.+.++++++|.+.++|++++.+.+... 
T Consensus       153 ~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-  230 (408)
T TIGR01733       153 ARRYGLDPDDRVLQFASLSFDASVEE-IFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP-  230 (408)
T ss_pred             HHhcCCCCCceEEEecCCccchhHHH-HHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh-
Confidence            34677889999999999999998876 899999999999987643   6889999999999999999999999988754 


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC-CC--CCCCccccCCCceEEEEeC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SR--NIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~-~~--~~~~~g~p~~~~~~~i~d~  158 (228)
                        ..++++|.++.+|+++++++.+++++.+++..+++.||+||++.++........ ..  ...++|+|+++++++|+| 
T Consensus       231 --~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-  307 (408)
T TIGR01733       231 --PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-  307 (408)
T ss_pred             --hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-
Confidence              557899999999999999999999999976999999999999987753222111 11  256899999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCccccccc-------ccccC------CC--eEEcCceEEEcCCCcEEEecccCCceeecCeE
Q 027096          159 DTQKPLPPNQLGEIWLRGPNMMRATK-------LTIDK------KG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  223 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~~~~~~~-------~~~~~------~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~  223 (228)
                      +++++++.|+.|||+++++.++..+.       ..+..      ++  ||+|||+++++++|++++.||.||+|+.+|++
T Consensus       308 ~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~  387 (408)
T TIGR01733       308 DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYR  387 (408)
T ss_pred             CCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEE
Confidence            45899999999999999998876332       12211      23  99999999999999999999999999999999


Q ss_pred             eecC
Q 027096          224 VTSN  227 (228)
Q Consensus       224 v~p~  227 (228)
                      |+|.
T Consensus       388 v~~~  391 (408)
T TIGR01733       388 IELG  391 (408)
T ss_pred             echH
Confidence            9985

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.8e-34  Score=243.76  Aligned_cols=221  Identities=28%  Similarity=0.368  Sum_probs=174.2

Q ss_pred             cccccCC-CCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC--C--CHHHHHHHHHhcCceEEEechHHHHHHHhcC
Q 027096            5 DQETAGE-LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRVTHIWVVPPLILALAKHG   79 (228)
Q Consensus         5 ~~~~~~~-~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~   79 (228)
                      .+.++++ ++|++++++|++|.+++.. ++.+++.|+++++.+.  +  ++..+++.++++++|.+..+|.++..+....
T Consensus       185 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~  263 (525)
T PRK05851        185 NARVGLDAATDVGCSWLPLYHDMGLAF-LLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYA  263 (525)
T ss_pred             HHHhCCCCCCCeEEEcCCCccCccHHH-HHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhh
Confidence            3456777 8999999999999999976 7899999999999763  3  5778999999999998765554444443322


Q ss_pred             C-CCCCCCCCceEEEEcccCCCHHHHHHHHHh---C--CCCeEEecccccccCCceeeccCCC-------------CCCC
Q 027096           80 L-VKKFDLSSLKLVGSGAAPLGKELMEECAKN---V--PSATVIQGYGLTETSGIATMENSFA-------------GSRN  140 (228)
Q Consensus        80 ~-~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~---~--~~~~l~~~yG~tE~g~~~~~~~~~~-------------~~~~  140 (228)
                      . .....++++|.++++|+++++++.++|.+.   +  +..++++.||+||++..+.......             ....
T Consensus       264 ~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (525)
T PRK05851        264 RRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARR  343 (525)
T ss_pred             ccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccce
Confidence            1 233457889999999999999999998874   2  2346999999999987655432110             0123


Q ss_pred             CCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCccccccccc--ccCCCeEEcCceEEEcCCCcEEEecccCCcee
Q 027096          141 IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLT--IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK  218 (228)
Q Consensus       141 ~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~~~~--~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~  218 (228)
                      ..++|+|+++++++|+|.+.+.+++.|+.|||+++|+.++..+...  ...++||+|||+++++ +|.++++||.||+||
T Consensus       344 ~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~  422 (525)
T PRK05851        344 HAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPIDPDDWFPTGDLGYLV-DGGLVVCGRAKELIT  422 (525)
T ss_pred             eeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccCCCCceeccceEEEE-CCEEEEEeecCCEEE
Confidence            4578999999999999955556789999999999999988754322  2347899999999996 799999999999999


Q ss_pred             ecCeEeecC
Q 027096          219 YKGFQVTSN  227 (228)
Q Consensus       219 ~~G~~v~p~  227 (228)
                      ++|+||+|.
T Consensus       423 ~~G~~v~p~  431 (525)
T PRK05851        423 VAGRNIFPT  431 (525)
T ss_pred             ECCEEeCHH
Confidence            999999984

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=6.2e-34  Score=248.32  Aligned_cols=213  Identities=24%  Similarity=0.423  Sum_probs=179.3

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      ...++++++|++++.+|++|.+++...++.++..|+++++.+. ++...+.+.++++++|.++.+|+++..+.+..  ..
T Consensus       398 ~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~  475 (718)
T PRK08043        398 KTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NP  475 (718)
T ss_pred             HHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--Cc
Confidence            3456789999999999999999987778899999999998864 57788899999999999999999998876542  23


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      .++++||.+++||+++++++.+.+++.+ ++++++.||+||++.++......  ....+++|+|+++++++++| +++. 
T Consensus       476 ~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d-~~~~-  550 (718)
T PRK08043        476 YDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLS-VPGI-  550 (718)
T ss_pred             ccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEec-CCCC-
Confidence            4578999999999999999999999988 78999999999998776543322  23467899999999999998 4432 


Q ss_pred             CCCCCceEEEEecCcccccccc----------------cccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRATKL----------------TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~~~----------------~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                         ++.|||+++|+.++..+..                ....+|||+|||+|++|+||.+++.||.||+||++|++|+|.
T Consensus       551 ---~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~  627 (718)
T PRK08043        551 ---EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLE  627 (718)
T ss_pred             ---CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHH
Confidence               4569999999998874322                012368999999999999999999999999999999999984

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.4e-34  Score=241.66  Aligned_cols=205  Identities=32%  Similarity=0.461  Sum_probs=173.9

Q ss_pred             cccc-CCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhc------
Q 027096            6 QETA-GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH------   78 (228)
Q Consensus         6 ~~~~-~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~------   78 (228)
                      ..+. ++++|++++++|+.|++.........+..|++.+...  ++..+++.+...+||.+..+|.+++.+-+.      
T Consensus       225 ~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~--~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~  302 (613)
T COG1022         225 EVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKE--DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVA  302 (613)
T ss_pred             hhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecC--CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHH
Confidence            3454 8899999999999999999865555566666655544  899999999999999999999998866431      


Q ss_pred             --CCC----------------------------------------CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeE
Q 027096           79 --GLV----------------------------------------KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV  116 (228)
Q Consensus        79 --~~~----------------------------------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l  116 (228)
                        ...                                        +...-.++|.+++||+++++++...++..  +.++
T Consensus       303 ~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i  380 (613)
T COG1022         303 KAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPI  380 (613)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCe
Confidence              000                                        00111489999999999999999999987  7999


Q ss_pred             EecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccc-------cccccccC
Q 027096          117 IQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDK  189 (228)
Q Consensus       117 ~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~-------~~~~~~~~  189 (228)
                      .+.||+||++++++..++.  ....+++|+|+|+++++|+|           .|||+||||.+|+       +|.+.++.
T Consensus       381 ~eGYGlTEts~~~~v~~~~--~~~~gtvG~p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~  447 (613)
T COG1022         381 LEGYGLTETSAVVSVNPPD--RFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTE  447 (613)
T ss_pred             EEEecccccccceEEcccc--CcccCCcCCcCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccc
Confidence            9999999999988877655  35668999999999999998           3999999999998       67888888


Q ss_pred             CCeEEcCceEEEcCCCcEEEecccCCceee-cCeEeecC
Q 027096          190 KGWVHTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       190 ~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                      ||||+|||+|.+|++|.+++.||++|+||. +|++|.|+
T Consensus       448 DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~  486 (613)
T COG1022         448 DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPE  486 (613)
T ss_pred             cCCcccCceeEEcCCCcEEEeecccceEECCCCcccChH
Confidence            999999999999999999999999999999 99999996

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-34  Score=254.96  Aligned_cols=215  Identities=21%  Similarity=0.282  Sum_probs=175.3

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++++++|++++.+|++|++++...++.++..|+++++.++++++.+++.|+++++|+++++|++++.+++.+......
T Consensus       639 ~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~  718 (994)
T PRK07868        639 SAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHG  718 (994)
T ss_pred             hhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCC
Confidence            45678899999999999999999876667777777787778899999999999999999999999999998865444455


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCc-eEEEE--------
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGV-EALIV--------  156 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~-~~~i~--------  156 (228)
                      ++++|.++  |+.+++++.+++.+.++++++++.||+||++.+.....    ....+++|+|++++ +++|.        
T Consensus       719 ~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~----~~~~~svG~p~pg~~~v~i~~~d~~~g~  792 (994)
T PRK07868        719 NHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANVS----GAKIGSKGRPLPGAGRVELAAYDPEHDL  792 (994)
T ss_pred             CCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccccC----CCCCcccCCccCCCCceeEEEecCcCCc
Confidence            67899766  34599999999999997789999999999876543221    23457899999997 66654        


Q ss_pred             ---eCCCC--CCCCCCCceEEEEecCcccccc----cccc-cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096          157 ---SVDTQ--KPLPPNQLGEIWLRGPNMMRAT----KLTI-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       157 ---d~~~~--~~~~~g~~Gel~v~~~~~~~~~----~~~~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                         | ++|  ++++.|+.|||+++++......    ...+ ..+|||+|||+|++|+||.++++||.||+||++|.+|+|
T Consensus       793 li~d-~~G~~~~~~~ge~Gel~~~~~~~~~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p  871 (994)
T PRK07868        793 ILED-DRGFVRRAEVNEVGVLLARARGPIDPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYT  871 (994)
T ss_pred             eeec-CCceEEEcCCCCceEEEEecCCCCChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcH
Confidence               3 445  5678899999999998654311    1123 247999999999999999999999999999999999998


Q ss_pred             C
Q 027096          227 N  227 (228)
Q Consensus       227 ~  227 (228)
                      +
T Consensus       872 ~  872 (994)
T PRK07868        872 E  872 (994)
T ss_pred             H
Confidence            4

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.1e-33  Score=238.39  Aligned_cols=218  Identities=25%  Similarity=0.332  Sum_probs=186.6

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      +.++++++|++++.+|++|..++.. ++.++.+|+++++.+.+++..+++.++++++|++.++|+++..+.+... ....
T Consensus       195 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~  272 (515)
T TIGR03098       195 TYLENRPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESA  272 (515)
T ss_pred             HHhCCCcccEEEEECchhhHhHHHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCC
Confidence            4567889999999999999999876 8899999999999988999999999999999999999999999876532 2245


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.++++|+++++++.+++++.+++..+++.||+||++....... .......+++|+|+++++++++| +++++++
T Consensus       273 ~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~  350 (515)
T TIGR03098       273 APSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLR-EDGSECA  350 (515)
T ss_pred             ccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEeccc-ccccCCCCCcceecCCCEEEEEC-CCCCCCC
Confidence            678999999999999999999999998889999999999976554332 22234567899999999999999 7889999


Q ss_pred             CCCceEEEEecCccccccc-------cccc-----------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRATK-------LTID-----------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~~-------~~~~-----------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+++|+.++..+.       ..+.           .++||+|||+++++++|.+++.||.||+||.+|.+|+|+
T Consensus       351 ~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~  430 (515)
T TIGR03098       351 PGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPT  430 (515)
T ss_pred             CCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHH
Confidence            9999999999998776321       1111           134899999999999999999999999999999999985

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.6e-33  Score=238.66  Aligned_cols=220  Identities=25%  Similarity=0.360  Sum_probs=186.3

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcC--CC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~--~~   81 (228)
                      .+.++++++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.+++++++++.++|+.+..+++..  ..
T Consensus       215 ~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~  294 (536)
T PRK10946        215 VEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG  294 (536)
T ss_pred             HHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccC
Confidence            35678899999999999999888753 3678899999999988889999999999999999999999999998752  22


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccC-CCceEEEEeCCC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDT  160 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~~  160 (228)
                      ....++++|.++++|+++++++.+++.+.+ ++++++.||+||+....... .........++|+|+ +++.++++| ++
T Consensus       295 ~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~v~i~d-~~  371 (536)
T PRK10946        295 SRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTRL-DDSDERIFTTQGRPMSPDDEVWVAD-AD  371 (536)
T ss_pred             ccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeecC-CCccccccccCCcccCCCceEEEEC-CC
Confidence            334568899999999999999999999988 78999999999965433222 222223456889998 789999999 78


Q ss_pred             CCCCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          161 QKPLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       161 ~~~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++.|+.|||+++|+.++..       +...++.++||+|||+++++++|.+++.||.+|+||++|.+|+|.
T Consensus       372 ~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~  445 (536)
T PRK10946        372 GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAE  445 (536)
T ss_pred             CCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHH
Confidence            8999999999999999998863       334455689999999999999999999999999999999999985

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.3e-33  Score=236.23  Aligned_cols=218  Identities=28%  Similarity=0.459  Sum_probs=185.0

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC--CCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK   83 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~   83 (228)
                      +.+++++++++++.+|++|..+... .+.++..|+++++.+.+++..+++.++++++|.++.+|++++.+++...  ...
T Consensus       189 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~  267 (509)
T PRK12406        189 LIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAK  267 (509)
T ss_pred             hhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhccc
Confidence            4677899999999999999988766 4567889999999888899999999999999999999999999987543  233


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      .+++++|.++.+|+++++++.+++.+.+ +..+++.||+||++.++...... ....++++|.|+++++++++| +++++
T Consensus       268 ~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d-~~~~~  344 (509)
T PRK12406        268 YDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFATSED-ALSHPGTVGKAAPGAELRFVD-EDGRP  344 (509)
T ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEecCccc-ccccCCCcCccCCCcEEEEEC-CCCCC
Confidence            4578999999999999999999999988 68899999999999866543322 223456899999999999999 77899


Q ss_pred             CCCCCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+++++.++.       ........++||+|||+++++++|.+++.||.||+||++|.+|+|.
T Consensus       345 ~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~  415 (509)
T PRK12406        345 LPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPA  415 (509)
T ss_pred             CCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHH
Confidence            999999999999987653       1111223678999999999999999999999999999999999884

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.4e-33  Score=238.77  Aligned_cols=211  Identities=32%  Similarity=0.566  Sum_probs=181.7

Q ss_pred             cEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCCceEE
Q 027096           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (228)
Q Consensus        14 d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~~   92 (228)
                      +++++.+|++|.+++...++..+..|...++.. ..++..+++.++++++|.++.+|+++..+.+........++++|.+
T Consensus       259 ~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~  338 (562)
T PRK12492        259 EVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLT  338 (562)
T ss_pred             eEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEE
Confidence            577899999999998876778888898777654 4689999999999999999999999999988766566678899999


Q ss_pred             EEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceEE
Q 027096           93 GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI  172 (228)
Q Consensus        93 ~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel  172 (228)
                      +++|+++++++.+++.+.+ +.++++.||+||++.++..+.... ....+.+|+|+++++++++| +++++++.|+.|||
T Consensus       339 ~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Gel  415 (562)
T PRK12492        339 NSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGE-LARLGTVGIPVPGTALKVID-DDGNELPLGERGEL  415 (562)
T ss_pred             EeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcc-cccCCccceecCCCEEEEEC-CCCCCCCCCCceEE
Confidence            9999999999999999887 799999999999988765543221 23446899999999999999 68899999999999


Q ss_pred             EEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          173 WLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       173 ~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++|+.++..       +...++.++||+|||+++++++|.+++.||.||+||++|.+|+|.
T Consensus       416 ~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~  477 (562)
T PRK12492        416 CIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPN  477 (562)
T ss_pred             EEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHH
Confidence            9999987762       233444578999999999999999999999999999999999985

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=7.9e-34  Score=262.77  Aligned_cols=219  Identities=17%  Similarity=0.157  Sum_probs=184.2

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ...++++++|+++..+|++|..++.. ++.+|+.|+++++.+.   .++..+++.++++++|+++++|++++.+....  
T Consensus       448 ~~~~~~~~~d~~~~~~~~~~d~~~~~-i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~--  524 (1389)
T TIGR03443       448 AKRFGLSENDKFTMLSGIAHDPIQRD-MFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA--  524 (1389)
T ss_pred             HHhcCCCCCCEEEEecCceecchHHH-HHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc--
Confidence            45678899999999999999988876 8899999999999864   36889999999999999999999999887542  


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC---------CCCCCCccccCCCce
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVE  152 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~~~  152 (228)
                       ...++++|.++++|+++++...+++.+.+++.+++|.||+||++..+........         .....++|+|+++++
T Consensus       525 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  603 (1389)
T TIGR03443       525 -TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQ  603 (1389)
T ss_pred             -cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCE
Confidence             2347889999999999999999999988888999999999999876654322110         112357899999999


Q ss_pred             EEEEeCCC-CCCCCCCCceEEEEecCccccccc-------ccc----------------------------cCCCeEEcC
Q 027096          153 ALIVSVDT-QKPLPPNQLGEIWLRGPNMMRATK-------LTI----------------------------DKKGWVHTG  196 (228)
Q Consensus       153 ~~i~d~~~-~~~~~~g~~Gel~v~~~~~~~~~~-------~~~----------------------------~~~~~~~TG  196 (228)
                      +.|+|.++ +++++.|+.|||+|+|+.++..+.       +.|                            ..++||+||
T Consensus       604 ~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TG  683 (1389)
T TIGR03443       604 LLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTG  683 (1389)
T ss_pred             EEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecC
Confidence            99999533 578999999999999999887332       222                            136899999


Q ss_pred             ceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          197 DLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       197 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |+|++++||.++++||.||+||++|+||+|.
T Consensus       684 Dlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~  714 (1389)
T TIGR03443       684 DLGRYLPDGNVECCGRADDQVKIRGFRIELG  714 (1389)
T ss_pred             CceeEcCCCCEEEecccCCEEEeCcEEecHH
Confidence            9999999999999999999999999999984

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=8.4e-34  Score=282.36  Aligned_cols=220  Identities=20%  Similarity=0.273  Sum_probs=189.1

Q ss_pred             ecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC
Q 027096            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (228)
Q Consensus         4 ~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~   80 (228)
                      ....++++++|++++.+|++|+.++.. ++.+|++|+++++.+   .+++..+.+.++++++|++.++|++++.+.+...
T Consensus       687 ~~~~~~~~~~d~~l~~~p~~fd~~~~~-~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~  765 (5163)
T PRK12316        687 MQQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED  765 (5163)
T ss_pred             HHHhcCCCCCCEEEeeCCeehHHHHHH-HHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc
Confidence            345688999999999999999999887 899999999999985   3789999999999999999999999999986532


Q ss_pred             CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCC
Q 027096           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT  160 (228)
Q Consensus        81 ~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~  160 (228)
                        ...++++|.+++|||++++++.+++.+.+++.+++|.||+||++..+.............++|+|+++++++|+| ++
T Consensus       766 --~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~  842 (5163)
T PRK12316        766 --VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-AN  842 (5163)
T ss_pred             --cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CC
Confidence              335788999999999999999999999888899999999999986544332222233456899999999999999 78


Q ss_pred             CCCCCCCCceEEEEecCcccccc-------cccc------cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          161 QKPLPPNQLGEIWLRGPNMMRAT-------KLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       161 ~~~~~~g~~Gel~v~~~~~~~~~-------~~~~------~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++.|+.|||+|+|+.++..+       .+.|      +.++||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus       843 ~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~  922 (5163)
T PRK12316        843 LEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELG  922 (5163)
T ss_pred             CCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChH
Confidence            89999999999999999988732       2233      2346999999999999999999999999999999999984

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-33  Score=239.33  Aligned_cols=213  Identities=38%  Similarity=0.692  Sum_probs=183.4

Q ss_pred             CCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCCceE
Q 027096           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (228)
Q Consensus        12 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~   91 (228)
                      .++++++++|++|.+++...++.+++.|+++++.+.+++..+++.++++++|++.++|+++..+..........++++|.
T Consensus       248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~  327 (563)
T PRK06710        248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRA  327 (563)
T ss_pred             CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhh
Confidence            34688999999999998776778899999999998899999999999999999999999999998765555556789999


Q ss_pred             EEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceE
Q 027096           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (228)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Ge  171 (228)
                      ++++|+++++++.+++.+.+ +.++++.||+||++.++...... .....+++|+|.+++.++++|++++++++.|+.||
T Consensus       328 v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Ge  405 (563)
T PRK06710        328 CISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLW-EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGE  405 (563)
T ss_pred             eeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCccc-ccccCCccCCCCCCCeEEEEECCCCccCCCCCceE
Confidence            99999999999999999888 78899999999998765433221 12334689999999999999988899999999999


Q ss_pred             EEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          172 IWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       172 l~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |+++++.++..+       ...+ .++||+|||+++++++|.+++.||.||+||.+|.+|+|+
T Consensus       406 l~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~  467 (563)
T PRK06710        406 IVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPR  467 (563)
T ss_pred             EEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHH
Confidence            999999887522       2223 468999999999999999999999999999999999985

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=7e-34  Score=279.30  Aligned_cols=220  Identities=20%  Similarity=0.305  Sum_probs=189.7

Q ss_pred             ecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC--CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         4 ~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ....++++++|++++++|++|..+... ++.+|+.|+++++.+.  +++..+++.|+++++|++.++|++++.+++..  
T Consensus      3269 ~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~-- 3345 (3956)
T PRK12467       3269 IAEAYELDANDRVLLFMSFSFDGAQER-FLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA-- 3345 (3956)
T ss_pred             HHHhcCCCcCCEEEEecCccHhHHHHH-HHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--
Confidence            346688999999999999999998876 8999999999999875  78999999999999999999999999997753  


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC---CCCCCCccccCCCceEEEEeC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~---~~~~~~~g~p~~~~~~~i~d~  158 (228)
                      ....+++||.+++|||++++++.+++++.+++.+++|.||+||++..++.......   .....++|+|++++++.|+| 
T Consensus      3346 ~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d- 3424 (3956)
T PRK12467       3346 GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD- 3424 (3956)
T ss_pred             cccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-
Confidence            23457889999999999999999999998888999999999999877654332111   12346899999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCccccc-------ccccccC-------CCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          159 DTQKPLPPNQLGEIWLRGPNMMRA-------TKLTIDK-------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~~~-------~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                      +++++++.|+.|||+|+|+.++..       +.+.|..       ++||+|||+|++++||.++++||+||+||++|++|
T Consensus      3425 ~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rI 3504 (3956)
T PRK12467       3425 GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRI 3504 (3956)
T ss_pred             CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEee
Confidence            889999999999999999998873       3334432       35799999999999999999999999999999999


Q ss_pred             ecC
Q 027096          225 TSN  227 (228)
Q Consensus       225 ~p~  227 (228)
                      .|.
T Consensus      3505 e~~ 3507 (3956)
T PRK12467       3505 ELG 3507 (3956)
T ss_pred             cHH
Confidence            874

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.4e-35  Score=224.89  Aligned_cols=222  Identities=27%  Similarity=0.396  Sum_probs=193.9

Q ss_pred             eeecccccCCCCcEEEEecchhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC
Q 027096            2 VTMDQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (228)
Q Consensus         2 ~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~   80 (228)
                      .+..+..++++.+++++.+|..|-+-+.. ..+..++.|+++|+.+..+++....+|+++++|+..++|.....+++..+
T Consensus       219 ~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e  298 (542)
T COG1021         219 RASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAE  298 (542)
T ss_pred             eehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhh
Confidence            34567789999999999999988765543 46788999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccC-CCceEEEEeCC
Q 027096           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVD  159 (228)
Q Consensus        81 ~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~  159 (228)
                      ....++++||.+=+||+.+++++.+++...+ ++.+-+.+||.|- .+....-++....-..+.|+|+ |.-+++|+| +
T Consensus       299 ~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEG-LvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~  375 (542)
T COG1021         299 WERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEG-LVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-A  375 (542)
T ss_pred             cccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhh-hhcccccCCchHheeecCCCcCCCcceeEEec-C
Confidence            8889999999999999999999999999998 8999999999994 3344333333333345789998 677999999 9


Q ss_pred             CCCCCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096          160 TQKPLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       160 ~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                      +|+++++||.|+|.++||+....       ....|+.+|+|+|||+++++++|++.+.||.+|+||.+|+||..
T Consensus       376 dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAA  449 (542)
T COG1021         376 DGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAA  449 (542)
T ss_pred             CCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhH
Confidence            99999999999999999998773       34567889999999999999999999999999999999999974

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-33  Score=235.29  Aligned_cols=217  Identities=24%  Similarity=0.344  Sum_probs=182.1

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC--CC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~   83 (228)
                      ..+.++.+|++++.+|++|.+++.. .+..+..|+++++.+.+++..+++.|+++++|++.++|+++..+......  ..
T Consensus       188 ~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  266 (501)
T PRK13390        188 AFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTR  266 (501)
T ss_pred             HHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhccc
Confidence            4577889999999999999998865 44567789999998889999999999999999999999999988865422  23


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      ..++++|.++.+|+++++++.+.+++.+ +..+++.||+||++.++....... ....+++|+|+++ +++++| +++++
T Consensus       267 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g-~~~i~d-~~~~~  342 (501)
T PRK13390        267 YDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDSPDW-LAHPGSVGRSVLG-DLHICD-DDGNE  342 (501)
T ss_pred             CChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecchhh-ccCCCCcCCcccc-eEEEEC-CCCCC
Confidence            4567899999999999999999999987 678999999999987654432211 2345689999999 799999 78899


Q ss_pred             CCCCCceEEEEecCccccccc-------ccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRATK-------LTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~~-------~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+++++.++..+.       ..+  ..++|++|||+++++++|.+++.||.||+||++|.+|+|.
T Consensus       343 ~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~  415 (501)
T PRK13390        343 LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQ  415 (501)
T ss_pred             CCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHH
Confidence            999999999999998776321       122  1257999999999999999999999999999999999985

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=4.5e-33  Score=236.09  Aligned_cols=214  Identities=27%  Similarity=0.408  Sum_probs=183.5

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...+++++++++++.+|++|..++.. ++.+++.|+++++.+.+++..+++.|+++++|+++++|+++..+.+.......
T Consensus       213 ~~~~~~~~~~~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~  291 (542)
T PRK06155        213 AEDLEIGADDVLYTTLPLFHTNALNA-FFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESD  291 (542)
T ss_pred             HHhcCCCCCCEEEEecCHHHHHHHHH-HHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcccc
Confidence            34577899999999999999999986 78999999999999889999999999999999999999999999887655555


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      ...++|.++.+|  +++++.+++++.+ +.++++.||+||++.++.....   ....+.+|.|.++++++++| ++++++
T Consensus       292 ~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d-~~~~~~  364 (542)
T PRK06155        292 RAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVD-EHDQEL  364 (542)
T ss_pred             ccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCCC---CCCCCCcCccCCCceEEEEC-CCCCCC
Confidence            667888877555  6789999999988 7899999999999887654322   23457899999999999999 778999


Q ss_pred             CCCCceEEEEecCc---ccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPN---MMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~---~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|+.|||+++++.   ++..+       ...+ .++||+|||+++++++|.+++.||.||+||++|.+|+|+
T Consensus       365 ~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~  436 (542)
T PRK06155        365 PDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSF  436 (542)
T ss_pred             CCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHH
Confidence            99999999999984   44422       2223 478999999999999999999999999999999999985

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-33  Score=237.46  Aligned_cols=218  Identities=28%  Similarity=0.453  Sum_probs=182.9

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCC-
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK-   82 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~-   82 (228)
                      ..++++++|++++.+|++|.+++...++.+++.|+++++.+  .+++..+++.++++++|.++++|+++..+.+..... 
T Consensus       210 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  289 (534)
T PRK05852        210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP  289 (534)
T ss_pred             HHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc
Confidence            45678999999999999999999888899999999988854  478999999999999999999999999998764322 


Q ss_pred             -CCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCC------CCCCCCCCccccCCCceEEE
Q 027096           83 -KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF------AGSRNIGSAGALAPGVEALI  155 (228)
Q Consensus        83 -~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~------~~~~~~~~~g~p~~~~~~~i  155 (228)
                       ....+++|.++.+|+++++++++.+.+.+ +.++++.||+||++..++.....      ......+.+|. .+++++++
T Consensus       290 ~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i  367 (534)
T PRK05852        290 SGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRI  367 (534)
T ss_pred             ccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEE
Confidence             24467899999999999999999999988 68899999999998766543221      01112234444 69999999


Q ss_pred             EeCCCCCCCCCCCceEEEEecCccccccc-------ccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          156 VSVDTQKPLPPNQLGEIWLRGPNMMRATK-------LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       156 ~d~~~~~~~~~g~~Gel~v~~~~~~~~~~-------~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +| +++++++.|+.|||+++|+.++..+.       ..+ .++||+|||++++|+||.+++.||.||+||.+|.+|+|+
T Consensus       368 ~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~  444 (534)
T PRK05852        368 VG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPE  444 (534)
T ss_pred             EC-CCCCCCCCCCceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHH
Confidence            99 77899999999999999998876332       233 468999999999999999999999999999999999985

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-33  Score=237.54  Aligned_cols=219  Identities=27%  Similarity=0.431  Sum_probs=182.3

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|.+|+.. ++.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+. .....
T Consensus       214 ~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~-~~~~~  291 (540)
T PRK06164        214 ARAYGYDPGAVLLAALPFCGVFGFST-LLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDT-AGERA  291 (540)
T ss_pred             HHhcCCCCCCEEEEcCCchhHHHHHH-HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHh-hcccC
Confidence            45577889999999999999999976 88999999999999889999999999999999999999999999876 23445


Q ss_pred             CCCCceEEEEcc-cCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC-CCCCCCccccC-CCceEEEEeCCCC
Q 027096           85 DLSSLKLVGSGA-APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALA-PGVEALIVSVDTQ  161 (228)
Q Consensus        85 ~~~~lr~~~~~G-~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~-~~~~~~~g~p~-~~~~~~i~d~~~~  161 (228)
                      .++++|.+..+| .+...++.+++.+.  ++++++.||+||++.++........ .......|.|. ++++++++|++++
T Consensus       292 ~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~  369 (540)
T PRK06164        292 DFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDG  369 (540)
T ss_pred             CCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCC
Confidence            678898887765 55566677766655  7889999999999887655432211 12233567765 7899999998889


Q ss_pred             CCCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          162 KPLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       162 ~~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++++.|+.|||+++|+.++..       +...+..++||+|||+|+++++|.+++.||.||+||++|.+|+|+
T Consensus       370 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~  442 (540)
T PRK06164        370 ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPA  442 (540)
T ss_pred             cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHH
Confidence            999999999999999998873       333455678999999999999999999999999999999999985

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=4.3e-33  Score=234.58  Aligned_cols=217  Identities=21%  Similarity=0.310  Sum_probs=186.7

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ..++++++|+++..+|++|..++...++.++..|+++++.++ +++..+++.|+++++|.++++|+++..+.........
T Consensus       196 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~  275 (508)
T TIGR02262       196 NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAE  275 (508)
T ss_pred             HhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccccc
Confidence            456889999999999999999997778889999999988764 6899999999999999999999999888766444444


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      ...++|.++++|+++++++.+.|.+.+ +.++++.||+||++.+...+...  ....+.+|+|+++++++++| ++++++
T Consensus       276 ~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d-~~~~~~  351 (508)
T TIGR02262       276 DQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVG-DGGQDV  351 (508)
T ss_pred             ccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEEC-CCCCCC
Confidence            567899999999999999999999988 68999999999999765543222  23456899999999999999 889999


Q ss_pred             CCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|+.|||+++++.++..+       ...+ .++||+|||+++++++|.+++.||.||+|+.+|.+|+|.
T Consensus       352 ~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~  420 (508)
T TIGR02262       352 AAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPF  420 (508)
T ss_pred             CCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeeeCCEEECHH
Confidence            9999999999998876532       2223 468999999999999999999999999999999999984

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=3.5e-33  Score=257.21  Aligned_cols=221  Identities=18%  Similarity=0.194  Sum_probs=186.5

Q ss_pred             ecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC
Q 027096            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (228)
Q Consensus         4 ~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~   80 (228)
                      ..+.++++++|++++.+|++|..++.. ++.+|++|+++++.+   ..++..+++.++++++|++.++|+++..+++...
T Consensus       630 ~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~  708 (1296)
T PRK10252        630 MQNHYPLTADDVVLQKTPCSFDVSVWE-FFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLT  708 (1296)
T ss_pred             HHHhcCCCCCCEEEEeCCcchhhhHHH-HHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhc
Confidence            345688999999999999999999876 789999999999976   3589999999999999999999999998887533


Q ss_pred             CCC--CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC-----CCCCCCccccCCCceE
Q 027096           81 VKK--FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-----SRNIGSAGALAPGVEA  153 (228)
Q Consensus        81 ~~~--~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~-----~~~~~~~g~p~~~~~~  153 (228)
                      ...  ..+.++|.+++|||++++++.+++.+.+ +.+++|.||+||++.+++.......     .....++|+|++++++
T Consensus       709 ~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~  787 (1296)
T PRK10252        709 PEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGL  787 (1296)
T ss_pred             cccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEE
Confidence            222  3457899999999999999999999877 7899999999999876654332211     1234579999999999


Q ss_pred             EEEeCCCCCCCCCCCceEEEEecCcccccc-------ccccc------CCCeEEcCceEEEcCCCcEEEecccCCceeec
Q 027096          154 LIVSVDTQKPLPPNQLGEIWLRGPNMMRAT-------KLTID------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYK  220 (228)
Q Consensus       154 ~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~  220 (228)
                      .|+| +++++++.|+.|||+|+|+.++..+       ...|.      .++||+|||+|++++||.++++||.||+||++
T Consensus       788 ~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~  866 (1296)
T PRK10252        788 RILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIR  866 (1296)
T ss_pred             EEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEe
Confidence            9999 8899999999999999999887622       22221      34599999999999999999999999999999


Q ss_pred             CeEeecC
Q 027096          221 GFQVTSN  227 (228)
Q Consensus       221 G~~v~p~  227 (228)
                      |++|+|.
T Consensus       867 G~ri~~~  873 (1296)
T PRK10252        867 GQRIELG  873 (1296)
T ss_pred             eEEecHH
Confidence            9999874

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.4e-34  Score=244.51  Aligned_cols=220  Identities=25%  Similarity=0.384  Sum_probs=176.1

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC--C--CHHHHHHHHHhcCc---eEEEechHHHHHHHhc
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRV---THIWVVPPLILALAKH   78 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~---t~l~~~p~~~~~l~~~   78 (228)
                      ..++++++|++++++|++|..|+.. ++.+++.|+++++.++  +  ++..+++.++++++   +.+.++|+++..+...
T Consensus       214 ~~~~~~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~  292 (631)
T PRK07769        214 DALEGQEGDRGVSWLPFFHDMGLIT-VLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAA  292 (631)
T ss_pred             HHcCCCCcceEEEeCCCcCchhhHH-HHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHh
Confidence            4567889999999999999999987 5666778999887753  4  88999999998876   7889999987766542


Q ss_pred             ---CC--CCCCCCCCceEEEEcccCCCHHHHHHHHHhCC-----CCeEEecccccccCCceeeccCCCCC----------
Q 027096           79 ---GL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAGS----------  138 (228)
Q Consensus        79 ---~~--~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~l~~~yG~tE~g~~~~~~~~~~~~----------  138 (228)
                         +.  .....++++|.+++||+++++++.+++.+.|+     ...+++.||+||++.+++........          
T Consensus       293 ~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~  372 (631)
T PRK07769        293 RGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDEL  372 (631)
T ss_pred             hccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHH
Confidence               11  11356789999999999999999999999872     34699999999987655433211100          


Q ss_pred             ---------------CCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccccc-------ccccc--------
Q 027096          139 ---------------RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT-------KLTID--------  188 (228)
Q Consensus       139 ---------------~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~--------  188 (228)
                                     ....++|+|.++.+++++|.+++++++.|+.|||+++|+.++..+       .+.|.        
T Consensus       373 ~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~  452 (631)
T PRK07769        373 NAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLS  452 (631)
T ss_pred             hCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccc
Confidence                           012468999999999999977899999999999999999988732       22221        


Q ss_pred             ---------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          189 ---------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       189 ---------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                               .+|||+|||+|+++ +|.++++||.||+||++|+||+|.
T Consensus       453 ~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~  499 (631)
T PRK07769        453 ESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQ  499 (631)
T ss_pred             cccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHH
Confidence                     24899999999994 899999999999999999999984

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.4e-33  Score=234.70  Aligned_cols=218  Identities=26%  Similarity=0.376  Sum_probs=183.3

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ..++++++|++++.+|++|.+++.. .+.++..|+++++.+ .+++..+++.++++++|.+..+|+.+..+.+..+....
T Consensus       212 ~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~  290 (539)
T PRK07008        212 DAMGLSARDAVLPVVPMFHVNAWGL-PYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGL  290 (539)
T ss_pred             cccCCCCCceEEecCchHHhhhHHH-HHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCC
Confidence            4677889999999999999988765 678899999999874 57899999999999999999999999999887666666


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---------CCCCCCCccccCCCceEEE
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---------GSRNIGSAGALAPGVEALI  155 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---------~~~~~~~~g~p~~~~~~~i  155 (228)
                      .++++|.++++|+++++++.+++++.+ +.++++.||+||++..+.......         .......+|+|++++++++
T Consensus       291 ~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i  369 (539)
T PRK07008        291 RFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKI  369 (539)
T ss_pred             CcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEE
Confidence            788999999999999999999999988 789999999999987654332110         0112357899999999999


Q ss_pred             EeCCCCCCCCCC--CceEEEEecCcccccccc----cccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          156 VSVDTQKPLPPN--QLGEIWLRGPNMMRATKL----TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       156 ~d~~~~~~~~~g--~~Gel~v~~~~~~~~~~~----~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +| +++++++.+  +.|||+++|+.++..+..    .+ .+|||+|||++++++||.+++.||+||+||.+|.+|+|.
T Consensus       370 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~  445 (539)
T PRK07008        370 VG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSI  445 (539)
T ss_pred             EC-CCCCccCCCCCcceEEEEeCCccchhhcCChhhhh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHH
Confidence            99 677777653  579999999988763322    22 368999999999999999999999999999999999984

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=6.9e-33  Score=232.93  Aligned_cols=219  Identities=18%  Similarity=0.225  Sum_probs=183.9

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~   82 (228)
                      ..+++.++|++++..|++|..++.. ++.++..|+++++.++   .++..+++.+.+++++.+.++|+++..+.......
T Consensus       175 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~  253 (502)
T TIGR01734       175 ADFPLSEGKQFLNQAPFSFDLSVMD-LYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN  253 (502)
T ss_pred             HhCCCCCCceEEeecCceechhHHH-HHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc
Confidence            4577889999999999999998876 7899999999999875   47899999999999999999999998877655445


Q ss_pred             CCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeCC
Q 027096           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVD  159 (228)
Q Consensus        83 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~~  159 (228)
                      ...+++++.++++|+++++++.+++.+.+++.++++.||+||++..+.......   ......++|.|.++++++++| +
T Consensus       254 ~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~  332 (502)
T TIGR01734       254 QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-E  332 (502)
T ss_pred             cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEEC-C
Confidence            566789999999999999999999999998999999999999876544322111   122335799999999999999 7


Q ss_pred             CCCCCCCCCceEEEEecCcccccccc-------cc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          160 TQKPLPPNQLGEIWLRGPNMMRATKL-------TI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       160 ~~~~~~~g~~Gel~v~~~~~~~~~~~-------~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++++++.|+.|||+++|+.++..+..       .+   +.++||+|||+|+++++ .+++.||.+|+||++|.+|+|+
T Consensus       333 ~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~  409 (502)
T TIGR01734       333 EGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELE  409 (502)
T ss_pred             CCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHH
Confidence            78999999999999999988763321       11   23469999999999977 9999999999999999999985

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=7.6e-33  Score=240.71  Aligned_cols=218  Identities=17%  Similarity=0.146  Sum_probs=178.8

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      .++++++|++++.+|++|+.+... ++.+|.+|+++++.++ .++..+++.++++++|++..+|++++.+.+.......+
T Consensus       391 ~~~l~~~d~~~~~~~l~w~~g~~~-v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~d  469 (728)
T PLN03052        391 HLDIRKGDIVCWPTNLGWMMGPWL-VYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLD  469 (728)
T ss_pred             hcCCCCCcEEEECCCcHHHhHHHH-HHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCC
Confidence            367899999999999999999865 7899999999999875 46678999999999999999999999998765445567


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      +++||.++++|++++++...++.+.++..++.+.||+||++..+....... ....+.+|.|.++++++++| ++|++++
T Consensus       470 lssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~v~v~d-~~g~~v~  547 (728)
T PLN03052        470 WSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQ-PQAFAAFSTPAMGCKLFILD-DSGNPYP  547 (728)
T ss_pred             hhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCC-CCCCCccccCCCCceEEEEC-CCCCCCC
Confidence            899999999999999999988888775567999999999986544322211 23456789999999999999 8899999


Q ss_pred             CCC--ceEEEEecCcccc-----------cccccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQ--LGEIWLRGPNMMR-----------ATKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~--~Gel~v~~~~~~~-----------~~~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+  .|||+++++....           .+...+   ..+.||+|||+++++++|.++++||+||+||++|.||+|.
T Consensus       548 ~g~~~~GEL~v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~  625 (728)
T PLN03052        548 DDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSV  625 (728)
T ss_pred             CCCCceEEEEEeCCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHH
Confidence            885  5999998643211           111111   1234999999999999999999999999999999999984

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.2e-33  Score=235.19  Aligned_cols=215  Identities=25%  Similarity=0.358  Sum_probs=175.4

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~   87 (228)
                      ++...++++++.+|++|..++.. .+.+++.|+++++ ...++..+++.++++++|.++++|++++.+.+........++
T Consensus       209 ~~~~~~~~~~~~~p~~h~~~l~~-~~~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~  286 (540)
T PRK05857        209 VTWVVGETTYSPLPATHIGGLWW-ILTCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVP  286 (540)
T ss_pred             cccccCceeeecCCccccchHHH-HHHHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCc
Confidence            45667889999999999999986 7888999999876 456888999999999999999999999999887655566788


Q ss_pred             CceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC---CCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~---~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      ++|.++++|++++....+ +.+.+ +.++++.||+||++......+....   ....+++|+|+++++++++|.+...++
T Consensus       287 ~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~  364 (540)
T PRK05857        287 SLRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPT  364 (540)
T ss_pred             cceEEEEcCccCCchhHH-HHHHh-CCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCcc
Confidence            999999999999988875 44566 7899999999999865443322111   123468999999999999994433333


Q ss_pred             -----CCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 -----PPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 -----~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                           +.|+.|||+++++.++..+       .+.+ .+|||+|||+|++|++|.+++.||.||+||++|.+|+|.
T Consensus       365 ~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~  438 (540)
T PRK05857        365 APGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPD  438 (540)
T ss_pred             ccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHH
Confidence                 4578899999999877632       2333 478999999999999999999999999999999999985

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-33  Score=234.86  Aligned_cols=214  Identities=30%  Similarity=0.519  Sum_probs=181.1

Q ss_pred             cCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCC
Q 027096            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (228)
Q Consensus         9 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~   86 (228)
                      +.++.|+++..+|++|..++.. ++ .++.|++.++.+  .+++..+++.++++++|.+.++|++++.+.+.+......+
T Consensus       202 ~~~~~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  279 (528)
T PRK07470        202 GTTEQDASLVVAPLSHGAGIHQ-LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDH  279 (528)
T ss_pred             CCCcccEEEEeccchhHHHHHH-HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCC
Confidence            5678899999999999999875 44 577788777664  4789999999999999999999999999988766666678


Q ss_pred             CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCC------CCCCCCCCccccCCCceEEEEeCCC
Q 027096           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF------AGSRNIGSAGALAPGVEALIVSVDT  160 (228)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~------~~~~~~~~~g~p~~~~~~~i~d~~~  160 (228)
                      +++|.++++|++++++..+++.+.+ +.++++.||+||++..+......      ......+++|.|+++++++++| ++
T Consensus       280 ~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~  357 (528)
T PRK07470        280 SSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DE  357 (528)
T ss_pred             cceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CC
Confidence            8999999999999999999998888 57899999999998766543211      0122446889999999999999 78


Q ss_pred             CCCCCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          161 QKPLPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       161 ~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++.|+.|||+++++.++..+       ...+ .++||+|||+++++++|++++.||.||+||++|.+|+|.
T Consensus       358 ~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~  430 (528)
T PRK07470        358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPR  430 (528)
T ss_pred             CCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHH
Confidence            89999999999999999887632       2222 478999999999999999999999999999999999985

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-32  Score=231.09  Aligned_cols=216  Identities=28%  Similarity=0.409  Sum_probs=181.8

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC--CC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~   83 (228)
                      ..+++.+++++++.+|++|.+++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+....  ..
T Consensus       193 ~~~~~~~~~~~l~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~  271 (511)
T PRK13391        193 RLWGFRSDMVYLSPAPLYHSAPQRA-VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDK  271 (511)
T ss_pred             HhcCCCCCCeEEEcCCHHHHHHHHH-HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhccc
Confidence            4466788999999999999988876 67889999999999889999999999999999999999999988765322  23


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      ..++++|.++.+|+++++++.+++++.+ +..+++.||+||++.++...... .....+++|+|+++ +++++| +++++
T Consensus       272 ~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~g-~~~i~d-~~~~~  347 (511)
T PRK13391        272 YDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTACDSEE-WLAHPGTVGRAMFG-DLHILD-DDGAE  347 (511)
T ss_pred             CCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEecCcc-ccccCCCcCCcccc-eEEEEC-CCCCC
Confidence            4578999999999999999999999988 68899999999999876543221 12345789999999 689999 78899


Q ss_pred             CCCCCceEEEEecCcccccc-------cccccC-CCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRAT-------KLTIDK-KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~-------~~~~~~-~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+++++ .+..+       ...+.. ++||+|||+++++++|.+++.||.||++|++|.+|+|+
T Consensus       348 ~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~  418 (511)
T PRK13391        348 LPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQ  418 (511)
T ss_pred             CCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHH
Confidence            99999999999998 44421       222322 48999999999999999999999999999999999874

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.8e-32  Score=231.25  Aligned_cols=215  Identities=28%  Similarity=0.401  Sum_probs=181.9

Q ss_pred             cCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCC
Q 027096            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (228)
Q Consensus         9 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~   88 (228)
                      .+.++|++++.+|++|..+....++.++..|+++++.+++++..+++.++++++|.+.++|++++.+............+
T Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  289 (517)
T PRK08008        210 ALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHC  289 (517)
T ss_pred             CCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcccccccc
Confidence            46789999999999999888877899999999999999999999999999999999999999999988765433334567


Q ss_pred             ceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCC
Q 027096           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (228)
Q Consensus        89 lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~  168 (228)
                      ++.++++ .+++++..+.+.+.+ +.++++.||+||++..+....... .....++|.|+++++++++| +++++++.|+
T Consensus       290 l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~  365 (517)
T PRK08008        290 LREVMFY-LNLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRD-DHNRPLPAGE  365 (517)
T ss_pred             ceeeEEe-cCCCHHHHHHHHHHh-CCeEEeeccccccccccccCCccc-cccCCccccCCCCcEEEEEC-CCCCCCCCCC
Confidence            8877765 478999999999988 789999999999987655433222 23456899999999999999 7889999999


Q ss_pred             ceEEEEecC---cccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          169 LGEIWLRGP---NMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       169 ~Gel~v~~~---~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|||+++|+   .++.       .+.+.+..+|||+|||+++++++|.++++||.||+||++|.+|+|.
T Consensus       366 ~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  434 (517)
T PRK08008        366 IGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCV  434 (517)
T ss_pred             cceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHH
Confidence            999999983   4443       2344555689999999999999999999999999999999999984

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5.5e-33  Score=273.06  Aligned_cols=221  Identities=21%  Similarity=0.280  Sum_probs=188.4

Q ss_pred             ecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC
Q 027096            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (228)
Q Consensus         4 ~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~   80 (228)
                      ....++++++|++++.+|++|+.++.. ++.+|++|+++++.+.   .++..+++.|+++++|+++++|++++.+.+...
T Consensus      1750 ~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~ 1828 (3956)
T PRK12467       1750 TQEAYQLSAADVVLQFTSFAFDVSVWE-LFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE 1828 (3956)
T ss_pred             HHHhcCCCcccEEEEecCccHHHHHHH-HHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc
Confidence            345688999999999999999999877 8899999999999863   578999999999999999999999999987422


Q ss_pred             CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCC---CCCCCCCCccccCCCceEEEEe
Q 027096           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF---AGSRNIGSAGALAPGVEALIVS  157 (228)
Q Consensus        81 ~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~---~~~~~~~~~g~p~~~~~~~i~d  157 (228)
                       ....++++|.+++|||++++++.++|.+.+++.+++|.||+||++..++.....   .......++|+|++++++.++|
T Consensus      1829 -~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld 1907 (3956)
T PRK12467       1829 -QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD 1907 (3956)
T ss_pred             -ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC
Confidence             234578899999999999999999999988888999999999998766543221   1122346899999999999999


Q ss_pred             CCCCCCCCCCCceEEEEecCcccccc-------ccccc-------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeE
Q 027096          158 VDTQKPLPPNQLGEIWLRGPNMMRAT-------KLTID-------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  223 (228)
Q Consensus       158 ~~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~-------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~  223 (228)
                       +++++++.|+.|||+|+|+.++..+       .+.|.       .++||+|||++++++||.++++||.||+||++|++
T Consensus      1908 -~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~r 1986 (3956)
T PRK12467       1908 -ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFR 1986 (3956)
T ss_pred             -CCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEE
Confidence             8899999999999999999988732       22221       34599999999999999999999999999999999


Q ss_pred             eecC
Q 027096          224 VTSN  227 (228)
Q Consensus       224 v~p~  227 (228)
                      |.|.
T Consensus      1987 Iel~ 1990 (3956)
T PRK12467       1987 IELG 1990 (3956)
T ss_pred             echH
Confidence            9874

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-32  Score=232.64  Aligned_cols=212  Identities=31%  Similarity=0.499  Sum_probs=181.7

Q ss_pred             CcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCCceE
Q 027096           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (228)
Q Consensus        13 ~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~   91 (228)
                      ...+++.+|++|.+++....+.++..|++.++.+ ..++..+++.++++++|.+..+|+++..+..........++++|.
T Consensus       252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~  331 (557)
T PRK07059        252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIV  331 (557)
T ss_pred             CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheE
Confidence            4577889999999988766778888898877765 458899999999999999999999999998876655667789999


Q ss_pred             EEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceE
Q 027096           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (228)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Ge  171 (228)
                      ++.+|+++++.+.+++.+.+ +.++++.||+||++.++...... ......++|.|+++++++++| +++++++.|+.||
T Consensus       332 ~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Ge  408 (557)
T PRK07059        332 ANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGE  408 (557)
T ss_pred             EEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceE
Confidence            99999999999999999988 79999999999999876544322 223456899999999999999 7889999999999


Q ss_pred             EEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          172 IWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       172 l~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |+++++..+..+       ...+..+|||+|||+++++++|.+++.||.+|+||++|.+|+|.
T Consensus       409 l~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~  471 (557)
T PRK07059        409 ICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPN  471 (557)
T ss_pred             EEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHH
Confidence            999999887632       23345689999999999999999999999999999999999985

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5.3e-33  Score=230.40  Aligned_cols=224  Identities=26%  Similarity=0.392  Sum_probs=191.3

Q ss_pred             eecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC--CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC
Q 027096            3 TMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (228)
Q Consensus         3 ~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~   80 (228)
                      +....++++++|++++...+.|+.+....++.+|++|+++++.+.  +++..+++.+.++++|.++..|+.++.+.....
T Consensus       271 ~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~  350 (626)
T KOG1175|consen  271 TSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQ  350 (626)
T ss_pred             hcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcc
Confidence            456789999999999999999999999988889999999999863  589999999999999999999999997766543


Q ss_pred             --CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeC
Q 027096           81 --VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        81 --~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~  158 (228)
                        .....+++||++.++||++.++..+++.+.++..++.+.||+||+|..+..+........++..+.|++++.+.|+| 
T Consensus       351 ~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-  429 (626)
T KOG1175|consen  351 EDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-  429 (626)
T ss_pred             ccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-
Confidence              33345577999999999999999999999984447999999999999987765443245778999999999999999 


Q ss_pred             CCCCCCCCC-CceEEEEecCcc-cc--------c-cccc-c-cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          159 DTQKPLPPN-QLGEIWLRGPNM-MR--------A-TKLT-I-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       159 ~~~~~~~~g-~~Gel~v~~~~~-~~--------~-~~~~-~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      ++|++++.+ +.|+|+++.+.. ..        . .... + .-.|+|+|||.+++|+||++++.||.||+||++|++++
T Consensus       430 e~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRig  509 (626)
T KOG1175|consen  430 ENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIG  509 (626)
T ss_pred             CCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeec
Confidence            789988876 889999999877 32        1 1111 1 13689999999999999999999999999999999998


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      ++
T Consensus       510 ta  511 (626)
T KOG1175|consen  510 TA  511 (626)
T ss_pred             HH
Confidence            74

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-32  Score=232.34  Aligned_cols=219  Identities=30%  Similarity=0.432  Sum_probs=182.7

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~   87 (228)
                      ..++++|++++.+|++|.+|+...++.++++|+++++.+++++..+++.+++++++.+..+|..+..+..........++
T Consensus       246 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~  325 (567)
T PRK06178        246 VVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLS  325 (567)
T ss_pred             ccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcc
Confidence            56788999999999999999876688899999999999999999999999999999999999999998876555555677


Q ss_pred             CceEEEEc--ccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC-----CCCCCCCccccCCCceEEEEeCCC
Q 027096           88 SLKLVGSG--AAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-----GSRNIGSAGALAPGVEALIVSVDT  160 (228)
Q Consensus        88 ~lr~~~~~--G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~-----~~~~~~~~g~p~~~~~~~i~d~~~  160 (228)
                      +++.+..+  ++.+++++.+.+++.++...+.+.||+||++..+.......     ......++|.|+++++++++|+++
T Consensus       326 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~  405 (567)
T PRK06178        326 SLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFET  405 (567)
T ss_pred             hheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCC
Confidence            88876543  58999999999999885444446899999886644322111     012345789999999999999888


Q ss_pred             CCCCCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          161 QKPLPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       161 ~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++.|+.|||+++|+.++..+       ...+ .+|||+|||+++++++|.++++||.||+||.+|.+|+|.
T Consensus       406 ~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~  478 (567)
T PRK06178        406 GELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPS  478 (567)
T ss_pred             CCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHH
Confidence            99999999999999999887632       2223 478999999999999999999999999999999999985

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=8.8e-33  Score=275.15  Aligned_cols=221  Identities=19%  Similarity=0.266  Sum_probs=189.6

Q ss_pred             ecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC--CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         4 ~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ....++++++|++++++|++|..+... ++.+|..|+++++.+.  +++..+++.++++++|+++++|++++.+.+....
T Consensus      4726 ~~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~ 4804 (5163)
T PRK12316       4726 TGERYELTPDDRVLQFMSFSFDGSHEG-LYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAER 4804 (5163)
T ss_pred             HHHhcCCCcCCeEEEecCcchhhHHHH-HHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhcc
Confidence            345688999999999999999999876 8999999999999864  3899999999999999999999999999876533


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~  158 (228)
                      . ..++++|.+++|||++++++.+++.+.+++.+++|.||+||++.+++......   ......++|+|+++++++|+| 
T Consensus      4805 ~-~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d- 4882 (5163)
T PRK12316       4805 D-GEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLD- 4882 (5163)
T ss_pred             c-cCCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEEC-
Confidence            2 26789999999999999999999988888899999999999998765543222   123456899999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCcccccc-------ccccc-------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          159 DTQKPLPPNQLGEIWLRGPNMMRAT-------KLTID-------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~-------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                      +++++++.|+.|||+|+|+.++..+       ...|.       ..+||+|||+|+++++|.++++||+||+||++|++|
T Consensus      4883 ~~~~~~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~ri 4962 (5163)
T PRK12316       4883 GQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRI 4962 (5163)
T ss_pred             CCCCcCCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECCCCcEEEeccccceEeeccEee
Confidence            8899999999999999999988732       22331       246999999999999999999999999999999999


Q ss_pred             ecC
Q 027096          225 TSN  227 (228)
Q Consensus       225 ~p~  227 (228)
                      +|.
T Consensus      4963 ~~~ 4965 (5163)
T PRK12316       4963 ELG 4965 (5163)
T ss_pred             cHH
Confidence            984

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-32  Score=229.92  Aligned_cols=212  Identities=29%  Similarity=0.454  Sum_probs=181.9

Q ss_pred             CCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC--CCCCCCC
Q 027096           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSS   88 (228)
Q Consensus        11 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~   88 (228)
                      ..++++++.+|++|.+++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..++..+..  ...++++
T Consensus       185 ~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  263 (502)
T PRK08276        185 GPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSS  263 (502)
T ss_pred             CCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCccc
Confidence            47789999999999999877 56789999999999889999999999999999999999999999876532  2345789


Q ss_pred             ceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCC
Q 027096           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (228)
Q Consensus        89 lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~  168 (228)
                      +|.++++|+++++++.+++.+.+ +..+++.||+||++.++...... .....+++|+|+ +.+++++| +++++++.|+
T Consensus       264 lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~  339 (502)
T PRK08276        264 LRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITSED-WLAHPGSVGKAV-LGEVRILD-EDGNELPPGE  339 (502)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecCcc-ccccCCCcceec-ccEEEEEC-CCCCCCcCCC
Confidence            99999999999999999999988 67899999999999866543322 123456899999 88999999 7789999999


Q ss_pred             ceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          169 LGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       169 ~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|||+++++.++..       +...+..++||+|||+++++++|.+++.||.||+||++|.+|+|+
T Consensus       340 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~  405 (502)
T PRK08276        340 IGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQ  405 (502)
T ss_pred             ceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHH
Confidence            99999999887752       233344459999999999999999999999999999999999884

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=7.6e-33  Score=240.34  Aligned_cols=216  Identities=27%  Similarity=0.349  Sum_probs=167.2

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCC--------HHHHHHHHHhcCceEEEechHHHHHHHhcC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD--------LEMFLRAIEKHRVTHIWVVPPLILALAKHG   79 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~   79 (228)
                      .+++++|++++.+|++|++++.. .+..+..|+++.+.....        +..++..++.+++|++.++|.+++.+.+..
T Consensus       287 ~~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~  365 (696)
T PLN02387        287 PKLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGV  365 (696)
T ss_pred             CCCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHH
Confidence            35788999999999999999876 455677888877644321        223566889999999999999999886431


Q ss_pred             CCC---------------------------------C--------------CCCCCceEEEEcccCCCHHHHHHHHHhCC
Q 027096           80 LVK---------------------------------K--------------FDLSSLKLVGSGAAPLGKELMEECAKNVP  112 (228)
Q Consensus        80 ~~~---------------------------------~--------------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~  112 (228)
                      ...                                 .              ....++|.+++||+++++++.+.++..+ 
T Consensus       366 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-  444 (696)
T PLN02387        366 RKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-  444 (696)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-
Confidence            100                                 0              0015899999999999999988887777 


Q ss_pred             CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCC-CCC--CCCCceEEEEecCccccc-------
Q 027096          113 SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPL--PPNQLGEIWLRGPNMMRA-------  182 (228)
Q Consensus       113 ~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~-~~~--~~g~~Gel~v~~~~~~~~-------  182 (228)
                      +.++++.||+||+++.++.....  ....+++|.|+++++++|+|.+++ ..+  +++..|||+|+||.++..       
T Consensus       445 g~~v~~~YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~  522 (696)
T PLN02387        445 GAPIGQGYGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEK  522 (696)
T ss_pred             CCCeeEeechhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHH
Confidence            78999999999998766554332  234578999999999999995443 322  234569999999999873       


Q ss_pred             ccccc--cCCC--eEEcCceEEEcCCCcEEEecccCCceee-cCeEeecC
Q 027096          183 TKLTI--DKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       183 ~~~~~--~~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                      +.+.+  +.+|  ||+|||+|++|+||.+++.||.||+||. +|++|+|+
T Consensus       523 T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~  572 (696)
T PLN02387        523 TDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLG  572 (696)
T ss_pred             HhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchH
Confidence            33344  3345  9999999999999999999999999998 79999985

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.2e-32  Score=236.51  Aligned_cols=205  Identities=25%  Similarity=0.274  Sum_probs=167.0

Q ss_pred             CCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCH---HHHHHHHHhcCceEEEechHHHHHHHhcCC----CCC
Q 027096           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGL----VKK   83 (228)
Q Consensus        12 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~----~~~   83 (228)
                      .++++++++|++|..++...++.++++|+++++.+. +++   ..+++.++++++|+++++|+++..|++...    ...
T Consensus       251 ~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~  330 (614)
T PRK08180        251 EPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRR  330 (614)
T ss_pred             CCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhh
Confidence            568999999999999987778899999999998763 443   467888999999999999999998876422    123


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHh----CC-CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKN----VP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~----~~-~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~  158 (228)
                      ..++++|.+++||+++++++.+++.+.    ++ +.++++.||+||++.++......  ....+++|+|+++++++++| 
T Consensus       331 ~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d-  407 (614)
T PRK08180        331 RFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVP-  407 (614)
T ss_pred             hhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc--cCCCCcccCccCCcEEEEec-
Confidence            456899999999999999999999875    32 36899999999998776544322  23567899999999999998 


Q ss_pred             CCCCCCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEE----cCCCcEEEecccCCceee-cCeEeec
Q 027096          159 DTQKPLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYF----DGDGQLYVVDRIKELIKY-KGFQVTS  226 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~----~~~g~~~~~GR~~d~i~~-~G~~v~p  226 (228)
                      +       ++.|||+++|+.++..       +...++.+|||+|||+|++    |++|.+++.||.||+||. +|++|+|
T Consensus       408 ~-------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~  480 (614)
T PRK08180        408 V-------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSV  480 (614)
T ss_pred             C-------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecc
Confidence            3       3459999999998863       3344556899999999999    467999999999998885 8998875

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.5e-32  Score=271.69  Aligned_cols=219  Identities=22%  Similarity=0.285  Sum_probs=188.1

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ...++++++|++++.+|++|..++.. ++.+|++|+++++.+   ..++..+++.++++++|+++++|++++.+.+... 
T Consensus      1306 ~~~~~~~~~d~~l~~~~~~fd~s~~~-~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~- 1383 (4334)
T PRK05691       1306 QATYALDDSDVLMQKAPISFDVSVWE-CFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL- 1383 (4334)
T ss_pred             HHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc-
Confidence            45678999999999999999999876 889999999999985   3689999999999999999999999999976532 


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  161 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~  161 (228)
                       ...++++|.+++|||++++++.++|.+.+++.+++|.||+||++..++............++|+|++++++.|+| +++
T Consensus      1384 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~ 1461 (4334)
T PRK05691       1384 -AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AEL 1461 (4334)
T ss_pred             -cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCC
Confidence             345789999999999999999999999998999999999999987665432222223456899999999999999 788


Q ss_pred             CCCCCCCceEEEEecCcccccc-------ccccc-------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          162 KPLPPNQLGEIWLRGPNMMRAT-------KLTID-------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       162 ~~~~~g~~Gel~v~~~~~~~~~-------~~~~~-------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++++.|+.|||+|+|+.++..+       .+.|.       ..+||+|||++++++||.++++||+||+||++|++|.|.
T Consensus      1462 ~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~ 1541 (4334)
T PRK05691       1462 NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPE 1541 (4334)
T ss_pred             CCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHH
Confidence            9999999999999999988732       22231       235999999999999999999999999999999999874

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=4.6e-32  Score=229.98  Aligned_cols=214  Identities=38%  Similarity=0.603  Sum_probs=182.3

Q ss_pred             CCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCCce
Q 027096           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK   90 (228)
Q Consensus        11 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr   90 (228)
                      ...+++++..|++|..++...++.++.+|+++++.+.+++..+++.|+++++|.+.++|+++..+.+........++++|
T Consensus       236 ~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~  315 (541)
T TIGR03205       236 GDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLA  315 (541)
T ss_pred             CCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccc
Confidence            34579999999999999888788999999999988888999999999999999999999999999876544455678899


Q ss_pred             EEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeC-CCCCCCCCCCc
Q 027096           91 LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPLPPNQL  169 (228)
Q Consensus        91 ~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~-~~~~~~~~g~~  169 (228)
                      .++.+|+++++++.+++.+.+ +.++++.||+||++.++....... ....+++|.|++++.+++++. +++++++.|+.
T Consensus       316 ~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~  393 (541)
T TIGR03205       316 TIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEG-PDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEV  393 (541)
T ss_pred             eEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCC-CCCCCCcceeccCceeEEEecCCCCccCCCCCe
Confidence            999999999999999998877 689999999999988765543221 233468999999999888642 66789999999


Q ss_pred             eEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          170 GEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       170 Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |||+++++.++..+       .+.+ .++||+|||+++++++|.+++.||.||+||++|.+|+|+
T Consensus       394 Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~  457 (541)
T TIGR03205       394 GELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQ  457 (541)
T ss_pred             eEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHH
Confidence            99999999877632       2233 367999999999999999999999999999999999985

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.7e-32  Score=229.03  Aligned_cols=218  Identities=25%  Similarity=0.363  Sum_probs=183.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ..++++++|+++...|++|.+++.. .+.++..|+++++.. .+++..+++.++++++|.++++|++++.+.+.......
T Consensus       213 ~~~~~~~~d~~~~~~p~~h~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~  291 (542)
T PRK06018        213 DALGTSAADTMLPVVPLFHANSWGI-AFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGL  291 (542)
T ss_pred             hhcCCCCCCEEEEecCHHHHhhhHH-HHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCC
Confidence            4577889999999999999998876 567899999998874 57899999999999999999999999999887655556


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC---------CCCCCCccccCCCceEEE
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEALI  155 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~~~~~i  155 (228)
                      +++++|.++++|+++++++.+++++ + +.++++.||+||++.+...+.....         .....++|+|.+++++++
T Consensus       292 ~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v  369 (542)
T PRK06018        292 KLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKI  369 (542)
T ss_pred             CcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEE
Confidence            7789999999999999999999999 6 8999999999999987654321110         112357899999999999


Q ss_pred             EeCCCCCCCCCC--CceEEEEecCccccccc----ccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          156 VSVDTQKPLPPN--QLGEIWLRGPNMMRATK----LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       156 ~d~~~~~~~~~g--~~Gel~v~~~~~~~~~~----~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +| +++++++.+  +.|||+++++.++..+.    ...+.++||+|||+++++++|.+++.||.||+||.+|.+|+|.
T Consensus       370 ~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~  446 (542)
T PRK06018        370 TD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVDGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSI  446 (542)
T ss_pred             EC-CCCCCCCCCCCceeEEEEecCCcchhhhcCcccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHH
Confidence            99 677777653  67999999998876332    2334578999999999999999999999999999999999984

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.5e-33  Score=240.36  Aligned_cols=210  Identities=28%  Similarity=0.409  Sum_probs=165.6

Q ss_pred             CCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHH-------HHHhcCceEEEechHHHHHHHhcCCC-
Q 027096           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWVVPPLILALAKHGLV-   81 (228)
Q Consensus        10 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~-------~i~~~~~t~l~~~p~~~~~l~~~~~~-   81 (228)
                      .+++|++++.+|++|+++... ....+..|+++++.   ++..+.+       .++++++|++.++|.+++.+.+.... 
T Consensus       307 ~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~  382 (700)
T PTZ00216        307 PEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAK  382 (700)
T ss_pred             CCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHH
Confidence            378899999999999998765 45567888887763   3445444       67889999999999999887542100 


Q ss_pred             --------------------------CC--------------CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEeccc
Q 027096           82 --------------------------KK--------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYG  121 (228)
Q Consensus        82 --------------------------~~--------------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG  121 (228)
                                                ..              ....++|.+++||+++++++.++++..+ + ++++.||
T Consensus       383 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG  460 (700)
T PTZ00216        383 LPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWG  460 (700)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccC
Confidence                                      00              0015799999999999999998887776 5 8999999


Q ss_pred             ccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCC-CCCCCCCceEEEEecCcccc-------cccccccCCCeE
Q 027096          122 LTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWV  193 (228)
Q Consensus       122 ~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~-~~~~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~  193 (228)
                      +||+++........  ....+++|+|+++++++|+|.++. ...+++..|||+|+|+.++.       .+.+.++.+|||
T Consensus       461 ~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~  538 (700)
T PTZ00216        461 LTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWF  538 (700)
T ss_pred             cccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCe
Confidence            99998765443322  234678999999999999994432 23455667999999999987       345556678999


Q ss_pred             EcCceEEEcCCCcEEEecccCCcee-ecCeEeecC
Q 027096          194 HTGDLGYFDGDGQLYVVDRIKELIK-YKGFQVTSN  227 (228)
Q Consensus       194 ~TGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~p~  227 (228)
                      +|||+|++++||.+++.||.||+|| .+|++|+|+
T Consensus       539 ~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~  573 (700)
T PTZ00216        539 HTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALE  573 (700)
T ss_pred             eccceEEEcCCCcEEEEEehHhheecCCCceeccH
Confidence            9999999999999999999999999 799999985

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=4.9e-32  Score=227.72  Aligned_cols=220  Identities=21%  Similarity=0.265  Sum_probs=185.0

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      .+.+++..++++++..|++|..++.. ++.++..|+++++.+.   .++..+++.+++++++.+.++|++++.+......
T Consensus       176 ~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~  254 (503)
T PRK04813        176 LEDFALPEGPQFLNQAPYSFDLSVMD-LYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSF  254 (503)
T ss_pred             HHHcCCCcCceeeecCCcchhHhHHH-HHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc
Confidence            35577889999999999999998876 7899999999999875   5889999999999999999999999887665444


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~  158 (228)
                      ....++++|.++++|+++++.+.+++.+.+++..+++.||+||++..+.......   ......++|+|.++++++++| 
T Consensus       255 ~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-  333 (503)
T PRK04813        255 NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-  333 (503)
T ss_pred             CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-
Confidence            5566789999999999999999999999998899999999999986554332211   122345789999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCcccccc-------cccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          159 DTQKPLPPNQLGEIWLRGPNMMRAT-------KLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.+++.|+.|||+++++.++..+       ...+   +..+||+|||++++ ++|.+++.||.||+||++|.+|+|.
T Consensus       334 ~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~  411 (503)
T PRK04813        334 EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELE  411 (503)
T ss_pred             CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHH
Confidence            8889999999999999999877622       1111   23359999999999 8999999999999999999999985

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.4e-32  Score=235.97  Aligned_cols=214  Identities=32%  Similarity=0.393  Sum_probs=170.8

Q ss_pred             cCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC--------
Q 027096            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--------   80 (228)
Q Consensus         9 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--------   80 (228)
                      +++++|++++.+|++|.++... .+.++..|+++++... ++..+++.|++.++|++.++|.+++.+.+...        
T Consensus       262 ~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~  339 (660)
T PLN02430        262 KMTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNP  339 (660)
T ss_pred             CCCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCH
Confidence            5678999999999999999877 4567899999987654 78889999999999999999999987764200        


Q ss_pred             -----------------------CCCC--------------CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEeccccc
Q 027096           81 -----------------------VKKF--------------DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT  123 (228)
Q Consensus        81 -----------------------~~~~--------------~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~t  123 (228)
                                             ....              ...++|.+++||+++++++.+.++. +++..+++.||+|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~-~~~~~i~~~YG~T  418 (660)
T PLN02430        340 RRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRV-TSCAFVVQGYGLT  418 (660)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHH-hcCCCeeeecchh
Confidence                                   0000              0157999999999999998766554 4457899999999


Q ss_pred             ccCCceeeccCCCCCCCCCCccccCCCceEEEEeC-CCC-CCCCCCCceEEEEecCccccc-------ccccccCCCeEE
Q 027096          124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQ-KPLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVH  194 (228)
Q Consensus       124 E~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~-~~~-~~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~  194 (228)
                      |+++..+...... ....+++|.|.++++++++|. +.+ .+++.+..|||+|+|+.++..       +.+.+ .+|||+
T Consensus       419 E~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~  496 (660)
T PLN02430        419 ETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFH  496 (660)
T ss_pred             hhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hcccee
Confidence            9987665443221 234578999999999999873 333 455666789999999998873       33444 589999


Q ss_pred             cCceEEEcCCCcEEEecccCCceee-cCeEeecC
Q 027096          195 TGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       195 TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                      |||+|++|+||.+++.||.||+||. +|++|+|+
T Consensus       497 TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~  530 (660)
T PLN02430        497 TGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALE  530 (660)
T ss_pred             ccceEEECCCCcEEEEEcccccEEcCCCcEEchH
Confidence            9999999999999999999999997 79999985

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.8e-32  Score=227.49  Aligned_cols=205  Identities=23%  Similarity=0.289  Sum_probs=162.0

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~   86 (228)
                      .+++++ ++.++++|++|.+|+.. ++.+++.|+++++.+.............+++++++++|++++.+.+.   ....+
T Consensus       155 ~~~~~~-~~~~~~~Pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~---~~~~l  229 (452)
T PRK07445        155 YFQLQQ-VNSFCVLPLYHVSGLMQ-FMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQL---RPQWL  229 (452)
T ss_pred             HhcCCC-CceEeccCchhhhhHHH-HHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhh---Chhhh
Confidence            345554 46788999999999976 78899999999988643222223334578899999999999998763   22346


Q ss_pred             CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 027096           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (228)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~  166 (228)
                      +++|.+++||+++++++.+++.+ + +.++++.||+||++..+.............++|+|+++++++++         .
T Consensus       230 ~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~  298 (452)
T PRK07445        230 AQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------A  298 (452)
T ss_pred             hcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------C
Confidence            78999999999999999998876 3 78999999999998655433222212234678999999999987         3


Q ss_pred             CCceEEEEecCcccccccccc-cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          167 NQLGEIWLRGPNMMRATKLTI-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       167 g~~Gel~v~~~~~~~~~~~~~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |+.|||+|+++.++..+.... ..++||+|||++++|+||++++.||.||+||++|+||+|+
T Consensus       299 g~~Gel~v~g~~~~~gY~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~  360 (452)
T PRK07445        299 NQTGNITIQAQSLALGYYPQILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPA  360 (452)
T ss_pred             CCcceEEEeCCccchhhcCCccCCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHH
Confidence            567999999999887554332 3568999999999999999999999999999999999985

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-32  Score=227.73  Aligned_cols=211  Identities=32%  Similarity=0.451  Sum_probs=178.8

Q ss_pred             CCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhc-------------
Q 027096           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH-------------   78 (228)
Q Consensus        12 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~-------------   78 (228)
                      ..|++++.+|+.|++.-.. -...++.|+++.+..+ |+..+.+.|++.++|.+.++|.+++++-+.             
T Consensus       301 ~~dv~lSyLPLAHi~er~~-~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr  378 (691)
T KOG1256|consen  301 GDDVYLSYLPLAHIFERVV-ELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKR  378 (691)
T ss_pred             cCceEEEeCcHHHHHHHHH-HHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHH
Confidence            3699999999999999988 4566788999999875 888888889999999999999998866531             


Q ss_pred             ----------C-------CCC-CC--------------CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccC
Q 027096           79 ----------G-------LVK-KF--------------DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS  126 (228)
Q Consensus        79 ----------~-------~~~-~~--------------~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g  126 (228)
                                .       ... ..              .-.++|.+++|++|+++++...++..+ ++++.+.||+||+.
T Consensus       379 ~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts  457 (691)
T KOG1256|consen  379 KLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETS  457 (691)
T ss_pred             HHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccC
Confidence                      0       000 00              014789999999999999999999987 79999999999998


Q ss_pred             CceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccc-------cccccccCCCeEEcCceE
Q 027096          127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLG  199 (228)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~  199 (228)
                      +.+.......  ...+++|.|+|+++++++|+++-+.-..+..|||||||+.++.       .|.+.++.|||++|||+|
T Consensus       458 ~g~~~~~~~d--~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG  535 (691)
T KOG1256|consen  458 AGTTLTLPGD--NVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIG  535 (691)
T ss_pred             CceEeccCCC--CCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccce
Confidence            5444433322  2678999999999999999877777777778999999999997       678888999999999999


Q ss_pred             EEcCCCcEEEecccCCceee-cCeEeecC
Q 027096          200 YFDGDGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       200 ~~~~~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                      +++++|.+++.||.++++|. +|+.|.|+
T Consensus       536 ~~~p~G~l~IidRkK~ifklaqGEyVaPe  564 (691)
T KOG1256|consen  536 EWDPNGTLKIIDRKKNIFKLAQGEYVAPE  564 (691)
T ss_pred             eECCCccEEEEecccceEEcCCCCccChH
Confidence            99999999999999999999 99999985

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.3e-32  Score=233.38  Aligned_cols=217  Identities=17%  Similarity=0.134  Sum_probs=176.1

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC-
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-   80 (228)
                      ..++++++|++++.++++|+.+.  .++.+|+.|+++++.++    +++..+++.++++++|++..+|++++.+.+... 
T Consensus       298 ~~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  375 (655)
T PRK03584        298 LHCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV  375 (655)
T ss_pred             HhcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC
Confidence            45788999999999999998553  26689999999999753    479999999999999999999999998876432 


Q ss_pred             -CCCCCCCCceEEEEcccCCCHHHHHHHHHhC-CCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeC
Q 027096           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNV-PSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~-~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~  158 (228)
                       ....++++||.++++|+++++++.+++.+.+ ++..+.+.||+||++.......... ....+.+|.|.++++++++| 
T Consensus       376 ~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~~~ivd-  453 (655)
T PRK03584        376 PGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLL-PVYRGEIQCRGLGMAVEAWD-  453 (655)
T ss_pred             ccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCC-CcCCCccCCCcCCceeEEEC-
Confidence             2335678999999999999999999999988 4688999999999865433221111 23456789999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCc--ccccccc-----c-----c-cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          159 DTQKPLPPNQLGEIWLRGPN--MMRATKL-----T-----I-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~--~~~~~~~-----~-----~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      ++++++ .|+.|||+|+++.  ++..+..     .     + ..++||+|||++++|+||.++++||+||+||++|++|+
T Consensus       454 ~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~  532 (655)
T PRK03584        454 EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIG  532 (655)
T ss_pred             CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEEC
Confidence            788888 7999999999974  3331111     1     1 12578999999999999999999999999999999999


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      |.
T Consensus       533 p~  534 (655)
T PRK03584        533 TA  534 (655)
T ss_pred             HH
Confidence            84

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=6e-32  Score=230.14  Aligned_cols=212  Identities=32%  Similarity=0.512  Sum_probs=179.4

Q ss_pred             CcEEEEecchhhHHhHHHHHHHHhhcCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCCceE
Q 027096           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (228)
Q Consensus        13 ~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~   91 (228)
                      ++++++.+|++|.+++....+.++..|++.++. +.+++..+++.++++++|.+..+|+++..+.+.....+..++++|.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~  333 (560)
T PRK08751        254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKM  333 (560)
T ss_pred             CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhhee
Confidence            357788899999999876556677777776665 4578999999999999999999999999998876555566789999


Q ss_pred             EEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceE
Q 027096           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (228)
Q Consensus        92 ~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Ge  171 (228)
                      +++||+++++.+.+.+++.+ +..+++.||+||++..+..+... .....+++|.|+++++++++| +++++++.|+.||
T Consensus       334 v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Ge  410 (560)
T PRK08751        334 TLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLT-LKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGE  410 (560)
T ss_pred             eeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceeccccc-ccccCCCcCccCCCceEEEEC-CCCCCCCCCCceE
Confidence            99999999999999999987 68899999999998876554322 123456899999999999999 7889999999999


Q ss_pred             EEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          172 IWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       172 l~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |+++++.++..       +...+..+|||+|||+++++++|.+++.||.||+||++|.+|+|.
T Consensus       411 l~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~  473 (560)
T PRK08751        411 LCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPN  473 (560)
T ss_pred             EEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHH
Confidence            99999987762       233444578999999999999999999999999999999999984

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-32  Score=236.28  Aligned_cols=218  Identities=27%  Similarity=0.401  Sum_probs=168.1

Q ss_pred             ccc-CCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC--C--CHHHHHHHHH--hcCceEEEechHHHHHHHhcC
Q 027096            7 ETA-GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIE--KHRVTHIWVVPPLILALAKHG   79 (228)
Q Consensus         7 ~~~-~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~   79 (228)
                      .++ ++++|++++++|++|..|+...++.++ .|++.++..+  +  ++..+++.++  +++++.++.+|+++..++...
T Consensus       228 ~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~-~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~  306 (612)
T PRK12476        228 SIDLLDRNTHGVSWLPLYHDMGLSMIGFPAV-YGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQR  306 (612)
T ss_pred             HhccCCCCceEEEeCCcccccchHHHHHHHh-cCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHh
Confidence            355 688899999999999999987444445 4555544432  3  7889999995  588999999999888776642


Q ss_pred             C----CCCCCCCCceEEEEcccCCCHHHHHHHHHhCC-----CCeEEecccccccCCceeeccCCCC-------------
Q 027096           80 L----VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG-------------  137 (228)
Q Consensus        80 ~----~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~l~~~yG~tE~g~~~~~~~~~~~-------------  137 (228)
                      .    .....++++| ++++|+++++++.+++.+.|+     ...+++.||+||++..+........             
T Consensus       307 ~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (612)
T PRK12476        307 GLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGA  385 (612)
T ss_pred             cChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhC
Confidence            1    1234578899 999999999999999999772     3469999999998765433211100             


Q ss_pred             ------------CCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccccc-------ccccc----------
Q 027096          138 ------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT-------KLTID----------  188 (228)
Q Consensus       138 ------------~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~----------  188 (228)
                                  .....++|+|+++++++|+|.+++++++.|+.|||+++|+.++..+       ...|.          
T Consensus       386 g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g  465 (612)
T PRK12476        386 GRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEG  465 (612)
T ss_pred             CCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccc
Confidence                        0012478999999999999955599999999999999999988632       22221          


Q ss_pred             --------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          189 --------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       189 --------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                              .++||+|||+|++ ++|.++++||+||+||++|++|+|.
T Consensus       466 ~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~  511 (612)
T PRK12476        466 SHADGAADDGTWLRTGDLGVY-LDGELYITGRIADLIVIDGRNHYPQ  511 (612)
T ss_pred             cccccccCCCCeeecccccee-ECCEEEEEeccCcEEEECCcccCHH
Confidence                    2359999999998 5999999999999999999999985

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-31  Score=225.15  Aligned_cols=213  Identities=24%  Similarity=0.323  Sum_probs=175.8

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|..++...++.++..|+++++.+.+++..+++.++++++|++.++|+.+..++...+....
T Consensus       185 ~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~  264 (529)
T PRK07867        185 AQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDD  264 (529)
T ss_pred             HHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccc
Confidence            45678899999999999999999988778899999999999889999999999999999999999999988876543333


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      ...++|. ++||+.+++.. +++.+.+ +.++++.||+||++......+    ....+++|.|.++  ++++|+++++++
T Consensus       265 ~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~~----~~~~~~~g~~~~~--~~i~~~~~~~~~  335 (529)
T PRK07867        265 ADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRTP----DTPPGALGPLPPG--VAIVDPDTGTEC  335 (529)
T ss_pred             cccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccCC----CCCCCCcCCCCCC--EEEEECCCCCCC
Confidence            3456774 56888887764 6777777 789999999999986554322    1234678999998  677887788889


Q ss_pred             CCCC------------ceEEEE-ecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          165 PPNQ------------LGEIWL-RGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       165 ~~g~------------~Gel~v-~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                      +.|+            .|||++ +++.++..+       ...+ .+|||+|||+++++++|.+++.||.||+||++|.+|
T Consensus       336 ~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v  414 (529)
T PRK07867        336 PPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENL  414 (529)
T ss_pred             CCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEe
Confidence            8888            899998 998877632       2223 478999999999999999999999999999999999


Q ss_pred             ecC
Q 027096          225 TSN  227 (228)
Q Consensus       225 ~p~  227 (228)
                      +|.
T Consensus       415 ~p~  417 (529)
T PRK07867        415 GTA  417 (529)
T ss_pred             CHH
Confidence            985

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-31  Score=226.45  Aligned_cols=213  Identities=32%  Similarity=0.517  Sum_probs=181.9

Q ss_pred             CCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCCc
Q 027096           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (228)
Q Consensus        11 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l   89 (228)
                      ...++++..+|++|.+++...++.++..|+++++.. ..++..+++.++++++|.+.++|++++.+.+........++++
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l  327 (560)
T PRK08974        248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSL  327 (560)
T ss_pred             CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccce
Confidence            456788899999999998766777888999877764 5688899999999999999999999999988765555667899


Q ss_pred             eEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCc
Q 027096           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL  169 (228)
Q Consensus        90 r~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~  169 (228)
                      |.++.+|+++++.+.++|++.+ +.++++.||+||++.++..+.... ....+++|.|+++++++++| +++++++.|+.
T Consensus       328 r~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~  404 (560)
T PRK08974        328 KLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDL-DYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEP  404 (560)
T ss_pred             eEEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCC-cccCCccccCcCCCEEEEEC-CCCCCCCCCCc
Confidence            9999999999999999999987 789999999999998766554322 23456899999999999999 67899999999


Q ss_pred             eEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          170 GEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       170 Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |||+++++.++..+       ...+ .++||+|||+++++++|.++++||.||+|+++|.+|+|.
T Consensus       405 Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~  468 (560)
T PRK08974        405 GELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPN  468 (560)
T ss_pred             eEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHH
Confidence            99999999877522       2223 478999999999999999999999999999999999884

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.6e-31  Score=242.30  Aligned_cols=213  Identities=23%  Similarity=0.390  Sum_probs=179.9

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      .+.++.+++|++++.+|++|..++...++.++..|+++++.+. .+...+.+.++++++|+++.+|++++.+.+..  ..
T Consensus       826 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~  903 (1140)
T PRK06814        826 AARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HP  903 (1140)
T ss_pred             HHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--cc
Confidence            3457889999999999999999997668899999999998764 56778899999999999999999999887653  34


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      .+++++|.+++||+++++++.+.+.+.+ +.++++.||+||++.++......  ....+++|+|.+++++++++ ..+  
T Consensus       904 ~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~-~~~--  977 (1140)
T PRK06814        904 YDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEP-VPG--  977 (1140)
T ss_pred             ccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCCC--CCCCCcCCccCCCCeEEEee-cCC--
Confidence            5578999999999999999999999988 78999999999998876544322  23456899999999999987 332  


Q ss_pred             CCCCCceEEEEecCccccccccc-------ccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRATKLT-------IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~~~~-------~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                        .++.|||+++|+.++..+...       ...+|||+|||++++|+||.+++.||.||+||++|++|+|.
T Consensus       978 --~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~ 1046 (1140)
T PRK06814        978 --IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLA 1046 (1140)
T ss_pred             --CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHH
Confidence              357799999999987743221       12478999999999999999999999999999999999984

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.2e-31  Score=265.36  Aligned_cols=218  Identities=18%  Similarity=0.214  Sum_probs=188.0

Q ss_pred             ecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC
Q 027096            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (228)
Q Consensus         4 ~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~   80 (228)
                      ....+++++.|+++..+|++|+.++.. ++.+|+.|+++++++.   .++..+.+.++++++|++.++|++++.++..  
T Consensus      3901 ~~~~~~~~~~~~~~~~~s~~fd~s~~~-~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~-- 3977 (4334)
T PRK05691       3901 KVPYLALSEADVIAQTASQSFDISVWQ-FLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE-- 3977 (4334)
T ss_pred             HHHhcCCCccceEEEecCCchhHHHHH-HHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh--
Confidence            345688999999999999999999988 8999999999999864   5789999999999999999999999988754  


Q ss_pred             CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC--CCCCCCccccCCCceEEEEeC
Q 027096           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG--SRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        81 ~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~--~~~~~~~g~p~~~~~~~i~d~  158 (228)
                       ....+++||.+++|||++++++.++|.+.+++++++|.||+||++..++.......  .....++|+|++++++.++| 
T Consensus      3978 -~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d- 4055 (4334)
T PRK05691       3978 -DRQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD- 4055 (4334)
T ss_pred             -ccccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-
Confidence             22346789999999999999999999998889999999999999887654332211  12335799999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCccccc-------ccccc-------cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          159 DTQKPLPPNQLGEIWLRGPNMMRA-------TKLTI-------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~-------~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                      +.+++++.|..|||+|+|+.++..       +.+.|       ..++||+|||++++++||.++++||.|++||++|++|
T Consensus      4056 ~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~ri 4135 (4334)
T PRK05691       4056 EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRI 4135 (4334)
T ss_pred             CCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEe
Confidence            889999999999999999999862       33333       2357999999999999999999999999999999999


Q ss_pred             ec
Q 027096          225 TS  226 (228)
Q Consensus       225 ~p  226 (228)
                      .+
T Consensus      4136 el 4137 (4334)
T PRK05691       4136 EL 4137 (4334)
T ss_pred             cH
Confidence            86

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.4e-32  Score=231.77  Aligned_cols=205  Identities=25%  Similarity=0.272  Sum_probs=165.3

Q ss_pred             CcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCH---HHHHHHHHhcCceEEEechHHHHHHHhcCCCC----CC
Q 027096           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KF   84 (228)
Q Consensus        13 ~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----~~   84 (228)
                      .+++++++|++|.+++...++.++..|+++++.+. +++   ..+++.++++++|+++++|++++.|.+.....    ..
T Consensus       264 ~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~  343 (624)
T PRK12582        264 PPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRS  343 (624)
T ss_pred             CceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHH
Confidence            58999999999999988777889999999998763 333   45677788999999999999999887543221    23


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhC----C-CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNV----P-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~----~-~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~  159 (228)
                      .+++||.+++||+++++++.+++.+.+    + +.++++.||+||++.++......  ....+++|+|++++++++++  
T Consensus       344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~~--  419 (624)
T PRK12582        344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD--TERVGLIGLPLPGVELKLAP--  419 (624)
T ss_pred             HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC--CCCCCCCCcCCCCcEEEEcc--
Confidence            467899999999999999999998863    2 36899999999998766532211  24467899999999999864  


Q ss_pred             CCCCCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEE-c---CCCcEEEecccCCceee-cCeEeecC
Q 027096          160 TQKPLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYF-D---GDGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       160 ~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~-~---~~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                            .|+.|||+|+|+.++..       +.+.++.+|||+|||+|++ |   ++|.+++.||.||+||. +|++|+|.
T Consensus       420 ------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~  493 (624)
T PRK12582        420 ------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVG  493 (624)
T ss_pred             ------CCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechH
Confidence                  47789999999988863       3345556899999999998 4   46899999999999996 89999974

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-31  Score=225.85  Aligned_cols=218  Identities=24%  Similarity=0.356  Sum_probs=179.1

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ..++++++|++++.+|++|.+++.. ++.++..|+++++.+ .+++..+++.+++++++.++.+|+++..++........
T Consensus       217 ~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  295 (576)
T PRK05620        217 DSLAVTHGESFLCCVPIYHVLSWGV-PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP  295 (576)
T ss_pred             hhcCCCCCCeEEEeCChHHhhhhHH-HHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc
Confidence            3577889999999999999999876 788899999998875 57999999999999999999999999988765332333


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC------CCCCCCccccCCCceEEEEeC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG------SRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~------~~~~~~~g~p~~~~~~~i~d~  158 (228)
                      ...++|.++.+|+++++++.+++.+.+ +.++++.||+||++.++........      ......+|++.++++++++| 
T Consensus       296 ~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-  373 (576)
T PRK05620        296 ERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-  373 (576)
T ss_pred             ccCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-
Confidence            345799999999999999999999988 6899999999999887654322110      11224688999999999999 


Q ss_pred             CCCCCCC--CCCceEEEEecCccccccc-----------------------ccccCCCeEEcCceEEEcCCCcEEEeccc
Q 027096          159 DTQKPLP--PNQLGEIWLRGPNMMRATK-----------------------LTIDKKGWVHTGDLGYFDGDGQLYVVDRI  213 (228)
Q Consensus       159 ~~~~~~~--~g~~Gel~v~~~~~~~~~~-----------------------~~~~~~~~~~TGD~~~~~~~g~~~~~GR~  213 (228)
                      + +++++  .++.|||+++|+.++..+.                       ..+..++||+|||++++++||.+++.||.
T Consensus       374 ~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~  452 (576)
T PRK05620        374 D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRA  452 (576)
T ss_pred             C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEech
Confidence            5 66554  4688999999998776321                       11335789999999999999999999999


Q ss_pred             CCceeecCeEeecC
Q 027096          214 KELIKYKGFQVTSN  227 (228)
Q Consensus       214 ~d~i~~~G~~v~p~  227 (228)
                      ||+||.+|.+|+|.
T Consensus       453 ~d~i~~~G~~i~~~  466 (576)
T PRK05620        453 RDVIRSGGEWIYSA  466 (576)
T ss_pred             hhhhhcCCEEEcHH
Confidence            99999999999984

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.98  E-value=3.5e-31  Score=228.75  Aligned_cols=217  Identities=17%  Similarity=0.137  Sum_probs=171.0

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC-
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-   80 (228)
                      ..++++++|++++.+|++|+.+. . ++.+|+.|+++++.++    .++..+++.++++++|++..+|++++.+..... 
T Consensus       299 ~~~~~~~~d~~~~~~~~~~~~~~-~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~  376 (652)
T TIGR01217       299 LHCDLGPGDRLFYYTTTGWMMWN-W-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVH  376 (652)
T ss_pred             hccCCCCCcEEEEeCCcchhhhH-H-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCC
Confidence            35788999999999999998542 2 5689999999999853    378899999999999999888887776654321 


Q ss_pred             -CCCCCCCCceEEEEcccCCCHHHHHHHHHhCC-CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeC
Q 027096           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~  158 (228)
                       ....++++||.++++|+++++++.+++.+.++ +..+.+.||+||++.......... ....+.+|.|.++++++++| 
T Consensus       377 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~v~ivd-  454 (652)
T TIGR01217       377 PARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTL-PVHIGEIQAPGLGTAVQSWD-  454 (652)
T ss_pred             ccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCC-CCcCCccCCCcCCCceEEEC-
Confidence             23456889999999999999999999999874 356789999999754332221111 22346788999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCc--ccccccc---------c-c-cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          159 DTQKPLPPNQLGEIWLRGPN--MMRATKL---------T-I-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~--~~~~~~~---------~-~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      ++|+++ .|+.|||++++|.  ++..+..         . + ..+|||+|||+|++|+||.++++||+||+||++|+||+
T Consensus       455 ~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~  533 (652)
T TIGR01217       455 PEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMG  533 (652)
T ss_pred             CCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcC
Confidence            788888 5999999999974  3331110         1 1 12689999999999999999999999999999999999


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      |.
T Consensus       534 p~  535 (652)
T TIGR01217       534 SA  535 (652)
T ss_pred             HH
Confidence            84

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.98  E-value=6.7e-31  Score=222.76  Aligned_cols=214  Identities=21%  Similarity=0.280  Sum_probs=171.9

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|..++...++.+|..|+++++.+.+++..+++.+++++++++..+|+.+..+...+.....
T Consensus       183 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~  262 (540)
T PRK13388        183 TERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDD  262 (540)
T ss_pred             HHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccc
Confidence            45678999999999999999999887667789999999998888999999999999999999999999988876543323


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEE----------
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEAL----------  154 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~----------  154 (228)
                      ...+++.+  .|++++++..+++.+.+ +.++++.||+||++.++....    ....+++|+|++++++.          
T Consensus       263 ~~~~l~~~--~G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~----~~~~~~vG~p~~g~~i~~~~~~~~~~~  335 (540)
T PRK13388        263 ADNPLRVA--FGNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVREP----GTPPGSIGRGAPGVAIYNPETLTECAV  335 (540)
T ss_pred             cccceEEE--ECCCCCHHHHHHHHHHh-CCceecccccccccceeecCC----CCCCCCCCCCCCCcEEEcCCCCccccc
Confidence            33456643  36677888999999888 689999999999987665432    12346899999997652          


Q ss_pred             -EEeCCCCCCC-CCCCceEEEEe-cCccccccc-------ccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          155 -IVSVDTQKPL-PPNQLGEIWLR-GPNMMRATK-------LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       155 -i~d~~~~~~~-~~g~~Gel~v~-~~~~~~~~~-------~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                       ++| ++|+++ +.++.|||+++ |+.++..+.       ..+ .+|||+|||+++++++|.++++||.||+||++|.+|
T Consensus       336 ~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v  413 (540)
T PRK13388        336 ARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENL  413 (540)
T ss_pred             eecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEe
Confidence             334 445554 34678999998 888776332       223 368999999999999999999999999999999999


Q ss_pred             ecC
Q 027096          225 TSN  227 (228)
Q Consensus       225 ~p~  227 (228)
                      +|.
T Consensus       414 ~p~  416 (540)
T PRK13388        414 SAA  416 (540)
T ss_pred             CHH
Confidence            984

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.97  E-value=1e-30  Score=216.08  Aligned_cols=207  Identities=29%  Similarity=0.464  Sum_probs=170.3

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|.+++.. ++.++..|+++++.+.+  ..+++.++++++|++.++|+++..+++.....  
T Consensus       144 ~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~--  218 (436)
T TIGR01923       144 KENLGFTEDDNWLLSLPLYHISGLSI-LFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLDEGGHN--  218 (436)
T ss_pred             HhhcCCCCCceEEEccCcHhHHHHHH-HHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC--
Confidence            45678899999999999999999875 88999999999998755  38999999999999999999999998864322  


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                        .++|.++++|+++++++.+++++.  +..+++.||+||++..+............ .+|.|++++++++.+.+.    
T Consensus       219 --~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~~~~~i~~~~~----  289 (436)
T TIGR01923       219 --ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARP-DVGRPLAGREIKIKVDNK----  289 (436)
T ss_pred             --CceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCcccccccc-CCCccCCCcEEEEEeCCC----
Confidence              689999999999999999988764  78999999999998876544333222222 489999999999844122    


Q ss_pred             CCCCceEEEEecCcccccccc------cccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRATKL------TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~~~------~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                        ++.|||+++++.++..+..      ....++||+|||++++++||.+++.||.||+||++|.+|+|.
T Consensus       290 --~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~  356 (436)
T TIGR01923       290 --EGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPE  356 (436)
T ss_pred             --CCceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHH
Confidence              2679999999887752211      122468999999999999999999999999999999999874

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.4e-30  Score=212.74  Aligned_cols=194  Identities=20%  Similarity=0.278  Sum_probs=167.0

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      .+.++...+|+++..+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.++++|+.+..+.+....   
T Consensus       134 ~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~---  210 (414)
T PRK08308        134 NEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG---  210 (414)
T ss_pred             HHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc---
Confidence            34577888999999999999999877789999999999999889999999999999999999999999999876432   


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                       ..+++.++.+|+++++++.+++++.  ..++++.||+||++++.....    ......+|+|++++++++.+ +     
T Consensus       211 -~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~----~~~~~~~G~p~~~~~~~~~~-~-----  277 (414)
T PRK08308        211 -TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICPD----MKSHLDLGNPLPHVSVSAGS-D-----  277 (414)
T ss_pred             -cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecCC----CCCCCccCccCCCeEEEEec-C-----
Confidence             1368899999999999999999987  468999999999987554221    22346799999999998875 2     


Q ss_pred             CCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                       .++.|||++++            .++||+|||+++++++|.++++||.||+||++|.+|+|.
T Consensus       278 -~~~~gel~v~~------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~  327 (414)
T PRK08308        278 -ENAPEEIVVKM------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPI  327 (414)
T ss_pred             -CCCCceEEEEc------------CCceEECCceEEECCCccEEEecccCCeEEECCEEECHH
Confidence             35679999975            367999999999999999999999999999999999984

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.6e-30  Score=220.75  Aligned_cols=221  Identities=26%  Similarity=0.418  Sum_probs=176.5

Q ss_pred             ccccCCCC-cEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcC-
Q 027096            6 QETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG-   79 (228)
Q Consensus         6 ~~~~~~~~-d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~-   79 (228)
                      ..+++.++ |++++++|++|..++...++.++..|+++++.+.    .++..+.+.+++++++.+..+|..+..+.... 
T Consensus       186 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~  265 (545)
T PRK07768        186 VAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLR  265 (545)
T ss_pred             HhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHh
Confidence            34566766 8999999999999998777788999999988764    26788899999999999887777766554421 


Q ss_pred             ---CCCCCCCCCceEEEEcccCCCHHHHHHHHHh---C--CCCeEEecccccccCCceeeccCCC---------------
Q 027096           80 ---LVKKFDLSSLKLVGSGAAPLGKELMEECAKN---V--PSATVIQGYGLTETSGIATMENSFA---------------  136 (228)
Q Consensus        80 ---~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~---~--~~~~l~~~yG~tE~g~~~~~~~~~~---------------  136 (228)
                         .....+++++|.++.+|+++++++.+++.+.   +  +...+++.||+||++..+.......               
T Consensus       266 ~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (545)
T PRK07768        266 RQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAAL  345 (545)
T ss_pred             ccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhcc
Confidence               1223567899999999999999999998874   4  2235999999999987654332110               


Q ss_pred             ---------CCCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccccc------cccccCCCeEEcCceEEE
Q 027096          137 ---------GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT------KLTIDKKGWVHTGDLGYF  201 (228)
Q Consensus       137 ---------~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~------~~~~~~~~~~~TGD~~~~  201 (228)
                               .......+|+|+++++++++| +++++++.|+.|||+++++.++..+      ......++||+|||++++
T Consensus       346 ~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~  424 (545)
T PRK07768        346 RRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYL  424 (545)
T ss_pred             CceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEE
Confidence                     011335789999999999999 8889999999999999998877632      222235689999999999


Q ss_pred             cCCCcEEEecccCCceeecCeEeecC
Q 027096          202 DGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       202 ~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++|.++++||.||+||.+|.+|+|.
T Consensus       425 ~~~g~l~~~GR~~d~i~~~G~~v~~~  450 (545)
T PRK07768        425 TEEGEVVVCGRVKDVIIMAGRNIYPT  450 (545)
T ss_pred             ecCCEEEEEccccceEEECCEecCHH
Confidence            99999999999999999999999985

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.97  E-value=5.1e-30  Score=218.97  Aligned_cols=214  Identities=27%  Similarity=0.406  Sum_probs=167.5

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~   87 (228)
                      +.+...++++..+|++|..++.. .+.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+..........
T Consensus       222 ~~~~~~~~~l~~~pl~h~~g~~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  300 (579)
T PLN03102        222 WEMGTCPVYLWTLPMFHCNGWTF-TWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRS  300 (579)
T ss_pred             cCCCCCCeEEecCChhhhcchhH-HHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcc
Confidence            44567789999999999999876 67788899999988888999999999999999999999999999876543334456


Q ss_pred             CceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC------------CCCCCCccccCCCceEEE
Q 027096           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG------------SRNIGSAGALAPGVEALI  155 (228)
Q Consensus        88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~------------~~~~~~~g~p~~~~~~~i  155 (228)
                      +++.++++|+++++++.+++.+ + +.++++.||+||+++.+........            ....+..+.+.+  .+.+
T Consensus       301 ~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i  376 (579)
T PLN03102        301 GPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDV  376 (579)
T ss_pred             cceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEE
Confidence            7888999999999999999876 5 6899999999999865443211100            001122223333  4556


Q ss_pred             EeCCCCCCCCC--CCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096          156 VSVDTQKPLPP--NQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       156 ~d~~~~~~~~~--g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                      ++.+.+++++.  ++.|||+++|+.++..+       ...+ .+|||+|||+|++|++|.+++.||.||+||++|.+|+|
T Consensus       377 ~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p  455 (579)
T PLN03102        377 KNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISS  455 (579)
T ss_pred             eccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECH
Confidence            66566677764  36799999999888733       2233 47899999999999999999999999999999999998


Q ss_pred             C
Q 027096          227 N  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       456 ~  456 (579)
T PLN03102        456 V  456 (579)
T ss_pred             H
Confidence            4

>PLN02479 acetate-CoA ligase

Probab=99.97  E-value=4.9e-30  Score=218.69  Aligned_cols=218  Identities=26%  Similarity=0.354  Sum_probs=171.8

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC-C
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-F   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~-~   84 (228)
                      ..++++++|++++.+|++|..++...+..+++.|.++++ ..+++..+++.++++++|+++.+|+++..+.+...... .
T Consensus       229 ~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~  307 (567)
T PLN02479        229 LIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICL-RQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETIL  307 (567)
T ss_pred             hhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEec-cCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccc
Confidence            356788899999999999999987644456666666554 56899999999999999999999999999987643332 2


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCC---------CCCCCCCCccccCCCce-EE
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF---------AGSRNIGSAGALAPGVE-AL  154 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~---------~~~~~~~~~g~p~~~~~-~~  154 (228)
                      .+++++.++++|+++++++.+++.+.  +.++++.||+||+++.+..+...         .........|.+.++.+ ++
T Consensus       308 ~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  385 (567)
T PLN02479        308 PLPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLD  385 (567)
T ss_pred             cccceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCcee
Confidence            56889999999999999999999875  68999999999986544322100         00001134677777775 78


Q ss_pred             EEeCCCCCCCCCC--CceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          155 IVSVDTQKPLPPN--QLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       155 i~d~~~~~~~~~g--~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      ++|++++++++.+  +.|||+++|+.++..+       ...+ .++||+|||+++++++|.+++.||.||+||.+|.+|+
T Consensus       386 i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~  464 (567)
T PLN02479        386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENIS  464 (567)
T ss_pred             EEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEc
Confidence            8886778888754  6799999999887632       3333 4789999999999999999999999999999999999


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      |.
T Consensus       465 ~~  466 (567)
T PLN02479        465 SL  466 (567)
T ss_pred             HH
Confidence            85

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.97  E-value=5.7e-30  Score=219.65  Aligned_cols=215  Identities=20%  Similarity=0.251  Sum_probs=168.1

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      .+.++++++|++++.+|++|..++...++.++..|+++++.+.+++..+++.++++++|++.++|++++.+.........
T Consensus       232 ~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~  311 (600)
T PRK08279        232 GGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD  311 (600)
T ss_pred             HHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccc
Confidence            34578999999999999999999988778889999999999999999999999999999999999999998876544444


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCC----CceEE------
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAP----GVEAL------  154 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~----~~~~~------  154 (228)
                      ...++|.+  +|+.+++++.+++.+.++...+++.||+||++......     ....+++|.+.+    +..+.      
T Consensus       312 ~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~  384 (600)
T PRK08279        312 RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDT  384 (600)
T ss_pred             cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc-----CCCCcccccccccccccceeeeeccCc
Confidence            45567754  47889999999999999766799999999987543321     112345665544    33222      


Q ss_pred             ---EEeCCCC--CCCCCCCceEEE--EecCcccccccc------cc------cCCCeEEcCceEEEcCCCcEEEecccCC
Q 027096          155 ---IVSVDTQ--KPLPPNQLGEIW--LRGPNMMRATKL------TI------DKKGWVHTGDLGYFDGDGQLYVVDRIKE  215 (228)
Q Consensus       155 ---i~d~~~~--~~~~~g~~Gel~--v~~~~~~~~~~~------~~------~~~~~~~TGD~~~~~~~g~~~~~GR~~d  215 (228)
                         +.+ .++  .+++.|+.|||+  ++++.++..+..      .+      ..++||+|||+|+++++|.+++.||.||
T Consensus       385 ~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d  463 (600)
T PRK08279        385 GEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGD  463 (600)
T ss_pred             CceeeC-CCCccccCCCCCceeEEEEecCcccccccCCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCC
Confidence               222 222  357889999998  667766653311      11      2357999999999999999999999999


Q ss_pred             ceeecCeEeecC
Q 027096          216 LIKYKGFQVTSN  227 (228)
Q Consensus       216 ~i~~~G~~v~p~  227 (228)
                      +||++|++|+|.
T Consensus       464 ~ik~~G~~i~p~  475 (600)
T PRK08279        464 TFRWKGENVATT  475 (600)
T ss_pred             eEEECCcccCHH
Confidence            999999999984

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.6e-30  Score=220.93  Aligned_cols=219  Identities=25%  Similarity=0.398  Sum_probs=174.5

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC--
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--   80 (228)
                      .+++.++|++++++|++|.+++...++.++..|+++++.+.    .++..+++.+.+++++.++..|..+..+.....  
T Consensus       212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~  291 (579)
T PRK09192        212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK  291 (579)
T ss_pred             cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc
Confidence            67889999999999999999998778888999999877652    368899999999999877665554444433221  


Q ss_pred             -CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCC-----CeEEecccccccCCceeeccCCCC-----------------
Q 027096           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-----ATVIQGYGLTETSGIATMENSFAG-----------------  137 (228)
Q Consensus        81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~-----~~l~~~yG~tE~g~~~~~~~~~~~-----------------  137 (228)
                       ....+++++|.++++|+++++++.+++.+.++.     ..+++.||+||++..+........                 
T Consensus       292 ~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (579)
T PRK09192        292 DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKA  371 (579)
T ss_pred             cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCcee
Confidence             223567899999999999999999999987632     358999999999876543321100                 


Q ss_pred             ---------CCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccccc------cccccCCCeEEcCceEEEc
Q 027096          138 ---------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT------KLTIDKKGWVHTGDLGYFD  202 (228)
Q Consensus       138 ---------~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~------~~~~~~~~~~~TGD~~~~~  202 (228)
                               .....++|+|+++++++++| +++++++.|+.|||+++|+.++..+      ...+..++||+|||++++ 
T Consensus       372 ~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw~~TGDlg~~-  449 (579)
T PRK09192        372 VAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYL-  449 (579)
T ss_pred             eccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhhhhcCCccccccccCCceeeccceeeE-
Confidence                     01124689999999999999 7789999999999999999887632      233445789999999999 


Q ss_pred             CCCcEEEecccCCceeecCeEeecC
Q 027096          203 GDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       203 ~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++|.++++||.||+||++|++|+|.
T Consensus       450 ~~G~l~~~GR~dd~i~~~G~~v~p~  474 (579)
T PRK09192        450 LDGYLYITGRAKDLIIINGRNIWPQ  474 (579)
T ss_pred             ECCEEEEEeccccEEEECCCccCHH
Confidence            8999999999999999999999984

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.97  E-value=7.2e-30  Score=218.16  Aligned_cols=215  Identities=22%  Similarity=0.399  Sum_probs=163.8

Q ss_pred             CCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhcCceEEEechHHHHHH-HhcC---CC
Q 027096           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILAL-AKHG---LV   81 (228)
Q Consensus        10 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l-~~~~---~~   81 (228)
                      ..+++++++++|++|..|+...++.+++.|+++++.+..    ++..+++.+++++++.. .+|+.+..+ ....   ..
T Consensus       204 ~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~  282 (578)
T PRK05850        204 PPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDM  282 (578)
T ss_pred             CCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhh
Confidence            356889999999999999987789999999999998642    78999999999999855 566554433 3221   11


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCC-----CCeEEecccccccCCceeeccCCCCC------------------
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAGS------------------  138 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~l~~~yG~tE~g~~~~~~~~~~~~------------------  138 (228)
                      ....++++|.++.||+++++++.+++.+.|+     +..+++.||+||++..+.........                  
T Consensus       283 ~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  362 (578)
T PRK05850        283 AGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRC  362 (578)
T ss_pred             cCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEec
Confidence            2345678999999999999999999988763     35789999999987654332111000                  


Q ss_pred             -----CCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccccc-------ccccc-----------CCCeEEc
Q 027096          139 -----RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT-------KLTID-----------KKGWVHT  195 (228)
Q Consensus       139 -----~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~-----------~~~~~~T  195 (228)
                           ......|.|. +.+++++|++++++++.|+.|||+++|+.++..+       ...|.           .++||+|
T Consensus       363 ~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~T  441 (578)
T PRK05850        363 ETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRT  441 (578)
T ss_pred             CCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeec
Confidence                 0001234443 5789999977788999999999999999988633       22221           2579999


Q ss_pred             CceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          196 GDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       196 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ||+++++ +|.++++||.||+||++|++|+|+
T Consensus       442 GDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~  472 (578)
T PRK05850        442 GDLGFIS-EGELFIVGRIKDLLIVDGRNHYPD  472 (578)
T ss_pred             cceeeEE-CCEEEEEcccccEEEECCeecCHH
Confidence            9999997 899999999999999999999985

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.8e-28  Score=207.51  Aligned_cols=210  Identities=22%  Similarity=0.268  Sum_probs=168.7

Q ss_pred             CCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHH-HHhcCC-CCCCCC
Q 027096           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILA-LAKHGL-VKKFDL   86 (228)
Q Consensus        11 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~-l~~~~~-~~~~~~   86 (228)
                      .++++++..+|++|..++.. ++.+++.|+++++.+  .+++..+++.++++++|.+.++|+.+.. +..... .....+
T Consensus       217 ~~~~~~~~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~  295 (533)
T PRK07798        217 GPGMRRFPAPPLMHGAGQWA-AFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDL  295 (533)
T ss_pred             CCCceEEEecchhhhhhHHH-HHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCC
Confidence            67799999999999999986 789999999999998  7899999999999999999999875543 333222 234567


Q ss_pred             CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCcc--ccCCCceEEEEeCCCCCCC
Q 027096           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAG--ALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g--~p~~~~~~~i~d~~~~~~~  164 (228)
                      +++|.++++|+++++++.+++++.+++..+++.||+||++.+........    ....|  .+.++..++++| ++++++
T Consensus       296 ~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----~~~~g~~~~~~~~~~~i~~-~~~~~~  370 (533)
T PRK07798        296 SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG----AVHTGGPRFTIGPRTVVLD-EDGNPV  370 (533)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC----CccCCCCccCCCceEEEEC-CCCCCC
Confidence            89999999999999999999999998899999999999976554332111    12233  678899999999 778899


Q ss_pred             CCCCc--eEEEEecCccccc-------ccccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQL--GEIWLRGPNMMRA-------TKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~--Gel~v~~~~~~~~-------~~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|+.  |+++.. +.++..       +...+   +.++||+|||+++++++|.+++.||.||+||.+|.+|+|+
T Consensus       371 ~~g~~~~g~l~~~-~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~  444 (533)
T PRK07798        371 EPGSGEIGWIARR-GHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPE  444 (533)
T ss_pred             CCCCCCeeEEEee-cCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHH
Confidence            98887  777654 444432       12222   2346999999999999999999999999999999999985

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.97  E-value=8.5e-29  Score=210.20  Aligned_cols=217  Identities=25%  Similarity=0.332  Sum_probs=167.9

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~   86 (228)
                      .+.+.+++++++.+|++|..++...++.+ +.|++.++...+++..+++.++++++|++.++|++++.|.+........+
T Consensus       217 ~~~~~~~~~~l~~~pl~h~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  295 (545)
T PRK08162        217 AWGMPKHPVYLWTLPMFHCNGWCFPWTVA-ARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGI  295 (545)
T ss_pred             hcCCCCCCeeEeccCcHhhhhHHHHHHHH-HHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCC
Confidence            45677889999999999999987644444 45666666667899999999999999999999999999987654433345


Q ss_pred             CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC---------CCCCCCccccCCC-ceEEEE
Q 027096           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPG-VEALIV  156 (228)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~-~~~~i~  156 (228)
                      ...+.++++|+.+++++.+.+++.  +.++++.||+||++..+..+.....         ......+|.+.+. ..++++
T Consensus       296 ~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~  373 (545)
T PRK08162        296 DHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVL  373 (545)
T ss_pred             ccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEE
Confidence            566778899999999999998774  7899999999998755444321110         0112345555543 357888


Q ss_pred             eCCCCCCCCC-C-CceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          157 SVDTQKPLPP-N-QLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       157 d~~~~~~~~~-g-~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |++++++++. | +.|||+++++.++..+       ...+ .++||+|||+++++++|.++++||.||+||.+|.+|+|.
T Consensus       374 d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~  452 (545)
T PRK08162        374 DPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSI  452 (545)
T ss_pred             cCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHH
Confidence            8677888875 3 4699999999887633       2233 468999999999999999999999999999999999984

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.96  E-value=2.2e-28  Score=201.57  Aligned_cols=209  Identities=18%  Similarity=0.145  Sum_probs=161.6

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC--C
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--F   84 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~   84 (228)
                      +++++++|++++..+..+..+.....+.++..|++++..+..++..+++.|++++++++.++|+++..|++......  .
T Consensus       113 ~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~  192 (422)
T TIGR02155       113 AAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP  192 (422)
T ss_pred             HcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc
Confidence            36888999999877765544443335667888999988877778999999999999999999999998876543222  2


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCC--ceeeccCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  162 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~--~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~  162 (228)
                      ...++|.++++||++++++.+.+.+.| ++++++.||+||+++  +...+...    ..+.. .+.+.+.++++|+++++
T Consensus       193 ~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~----~~g~~-~~~~~~~~eivd~~~g~  266 (422)
T TIGR02155       193 AQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLSEVIGPGVAMECVET----QDGLH-IWEDHFYPEIIDPHTGE  266 (422)
T ss_pred             ccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccchhhcCCceeeccccc----CCCce-EecCeeEEEEECCCCCC
Confidence            235899999999999999999999999 689999999999853  22222111    11111 12235678899977899


Q ss_pred             CCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCC-C-----cEEEecccCCceeecCeEeecC
Q 027096          163 PLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGD-G-----QLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       163 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~-g-----~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++++|+.|||++++..     ...+ ..+||+|||+++++++ |     .+++.||.||+|+++|.+|+|.
T Consensus       267 ~v~~Ge~Gelvvt~~~-----~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~  331 (422)
T TIGR02155       267 VLPDGEEGELVFTTLT-----KEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPT  331 (422)
T ss_pred             CCCCCCeeEEEEecCC-----cccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHH
Confidence            9999999999999743     2333 4579999999999875 4     4689999999999999999984

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=2.9e-28  Score=202.84  Aligned_cols=194  Identities=28%  Similarity=0.430  Sum_probs=159.6

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++..++|+++..+|++|.+++.. ++.+|..|+++++.+.   ..+++.+.  +++.+..+|+++..+......   
T Consensus       168 ~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~G~~v~~~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~---  238 (458)
T PRK09029        168 LSLMPFTAQDSWLLSLPLFHVSGQGI-VWRWLYAGATLVVRDK---QPLEQALA--GCTHASLVPTQLWRLLDNRSE---  238 (458)
T ss_pred             hhcCCCCccceEEEecCcHhhhhhHH-HHHHHhCCceEEeCCh---HHHHHHHh--hceeeecChHHHHHHHhcccc---
Confidence            34577889999999999999999875 7788999999998764   45666663  789999999999998876432   


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                       ..++|.+++||+++++.+.+++.+.  +.++++.||+||++........    .....+|+|++++++++++       
T Consensus       239 -~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~-------  304 (458)
T PRK09029        239 -PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA----DGLAGVGSPLPGREVKLVD-------  304 (458)
T ss_pred             -CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC----CCCCCCCCCCCCCEEEEeC-------
Confidence             3479999999999999999998764  7899999999999876543322    1234699999999999987       


Q ss_pred             CCCCceEEEEecCcccccccc------cccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRATKL------TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~~~------~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                           |||+++|+.++..+..      ....++||+|||+|+++ +|.+++.||+||+||++|.+|+|.
T Consensus       305 -----gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~  367 (458)
T PRK09029        305 -----GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPE  367 (458)
T ss_pred             -----CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHH
Confidence                 8999999988763321      11356899999999999 999999999999999999999984

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=1.8e-27  Score=192.26  Aligned_cols=187  Identities=27%  Similarity=0.390  Sum_probs=154.2

Q ss_pred             CCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEc---CCCCHHHHHHHHHhcC--ceEEEechHHHHHHHhcCCCCCCCC
Q 027096           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHR--VTHIWVVPPLILALAKHGLVKKFDL   86 (228)
Q Consensus        12 ~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~---~~~~~~~~~~~i~~~~--~t~l~~~p~~~~~l~~~~~~~~~~~   86 (228)
                      ..++++..+|++|..++.. ++.+++.|++.++.   ..+++..+++.+++++  .++...+|..+..++.... ....+
T Consensus        73 ~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~  150 (358)
T PRK07824         73 GPGQWLLALPAHHIAGLQV-LVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAAL  150 (358)
T ss_pred             CCCeEEEECChHHHHHHHH-HHHHHHcCCeEEecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCc
Confidence            4578899999999999876 78889999998873   3578999999999998  5666778888887766543 22457


Q ss_pred             CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 027096           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (228)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~  166 (228)
                      .++|.++++|+++++++.+++.+.  +.++++.||+||++..+.            ..|.|++++++++.+         
T Consensus       151 ~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~------------~~G~~~~g~~v~i~~---------  207 (358)
T PRK07824        151 AELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSETSGGCV------------YDGVPLDGVRVRVED---------  207 (358)
T ss_pred             ccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCccCCCcC------------cCceeCCCCEEEecC---------
Confidence            889999999999999999998864  789999999999875431            357899999998844         


Q ss_pred             CCceEEEEecCcccccc-----cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          167 NQLGEIWLRGPNMMRAT-----KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       167 g~~Gel~v~~~~~~~~~-----~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                         |||+++|+.++..+     ...+..++||+|||++++ ++|.+++.||.||+||.+|++|+|.
T Consensus       208 ---Gei~v~g~~~~~gY~~~~~~~~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~  269 (358)
T PRK07824        208 ---GRIALGGPTLAKGYRNPVDPDPFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQ  269 (358)
T ss_pred             ---CEEEEecCccccccCCCcccccccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHH
Confidence               89999999887632     222335679999999999 8899999999999999999999984

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.94  E-value=8.7e-27  Score=187.06  Aligned_cols=214  Identities=28%  Similarity=0.384  Sum_probs=167.9

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHH----H----HHHHHhcCceEEEechHHHHHHHhcC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEM----F----LRAIEKHRVTHIWVVPPLILALAKHG   79 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~----~----~~~i~~~~~t~l~~~p~~~~~l~~~~   79 (228)
                      ..+.+.|+++..+|+.|+.-+.. =+.+++.|+++-+.+..+..+    +    --.+...++|+|.++|..+.++.+.-
T Consensus       274 ~~lg~~D~yi~yLPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgV  352 (678)
T KOG1180|consen  274 PELGPKDRYIAYLPLAHILELTA-ELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGV  352 (678)
T ss_pred             cccCCCceEEEechHHHHHHHHH-HHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHH
Confidence            36789999999999999999988 467799999988876432211    1    23346789999999999888664310


Q ss_pred             --------------------------C----------------CCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEE
Q 027096           80 --------------------------L----------------VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVI  117 (228)
Q Consensus        80 --------------------------~----------------~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~  117 (228)
                                                +                .+...--+||.+++||++++++..+.+.-.+ .+++.
T Consensus       353 l~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~  431 (678)
T KOG1180|consen  353 LSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVL  431 (678)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-ccccc
Confidence                                      0                0001114799999999999999998888777 67999


Q ss_pred             ecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCC--ceEEEEecCcccc-------ccccccc
Q 027096          118 QGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ--LGEIWLRGPNMMR-------ATKLTID  188 (228)
Q Consensus       118 ~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~--~Gel~v~~~~~~~-------~~~~~~~  188 (228)
                      +.||.||++.-.+.....  ....+.+|.|++-++++++|-+++.-...+.  .|||+|+|+.++.       .+.+.|.
T Consensus       432 qGYGLTEtca~~tv~e~~--d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft  509 (678)
T KOG1180|consen  432 QGYGLTETCAAATVLEPE--DFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFT  509 (678)
T ss_pred             ccccccchhcccEecChh--hcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhce
Confidence            999999998876655443  3455799999999999999976664444444  6999999999987       4555565


Q ss_pred             C-CC--eEEcCceEEEcCCCcEEEecccCCceee-cCeEee
Q 027096          189 K-KG--WVHTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVT  225 (228)
Q Consensus       189 ~-~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~  225 (228)
                      . +|  ||+|||+|++.+||+|.+.+|++|++|. +|+=|+
T Consensus       510 ~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIs  550 (678)
T KOG1180|consen  510 VEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYIS  550 (678)
T ss_pred             ecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceee
Confidence            5 77  9999999999999999999999999999 888765

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.93  E-value=3.8e-24  Score=172.50  Aligned_cols=220  Identities=22%  Similarity=0.215  Sum_probs=170.8

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      -+.++++++|+++..+|++|+++....+..++..|+|+++..+|++.++|+.+.++++|++.-+-.+.+.|+.++.....
T Consensus       275 ~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e  354 (649)
T KOG1179|consen  275 YYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE  354 (649)
T ss_pred             HHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999998876666


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC-CCCCCCccccCCCceEEEEeCCCCC-
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQK-  162 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~-~~~~~~~g~p~~~~~~~i~d~~~~~-  162 (228)
                      +-..+|.++  |..+.+++++.|.++|+..++.+.||+||...-.......-+ ........+-+--+++.-+|+++++ 
T Consensus       355 r~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~  432 (649)
T KOG1179|consen  355 RQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEP  432 (649)
T ss_pred             cCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCce
Confidence            666777776  777999999999999977889999999997664444322110 1111111222233455555666665 


Q ss_pred             ---------CCCCCCceEEEEe--cCcc---ccc------------ccccc-cCCCeEEcCceEEEcCCCcEEEecccCC
Q 027096          163 ---------PLPPNQLGEIWLR--GPNM---MRA------------TKLTI-DKKGWVHTGDLGYFDGDGQLYVVDRIKE  215 (228)
Q Consensus       163 ---------~~~~g~~Gel~v~--~~~~---~~~------------~~~~~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d  215 (228)
                               +|++||+|.++-+  ....   +..            ....| ..|-||.|||+-..|+.|.+++.+|..|
T Consensus       433 iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGD  512 (649)
T KOG1179|consen  433 IRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGD  512 (649)
T ss_pred             eecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCC
Confidence                     5678999987533  2111   111            11222 2345999999999999999999999999


Q ss_pred             ceeecCeEeec
Q 027096          216 LIKYKGFQVTS  226 (228)
Q Consensus       216 ~i~~~G~~v~p  226 (228)
                      ....+|+||+.
T Consensus       513 TFRWKGENVsT  523 (649)
T KOG1179|consen  513 TFRWKGENVST  523 (649)
T ss_pred             ceeecCCcccH
Confidence            99999999975

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.92  E-value=5.6e-24  Score=176.07  Aligned_cols=208  Identities=19%  Similarity=0.080  Sum_probs=152.5

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC--CC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--FD   85 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~   85 (228)
                      .+++++|+++...|..+..+.....+.++..|++++....  ....++.|++++++.+.++|+.+..+++..+...  ..
T Consensus       125 ~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~  202 (445)
T TIGR03335       125 QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA  202 (445)
T ss_pred             cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc
Confidence            4889999999999988776665545667888988765442  3456889999999999999998888776433222  12


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ..++|.++++||++++++++.+.+.| ++++++.||+||++. +..+....     + ...+.+...++|+|++++.+++
T Consensus       203 ~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE~~~-~~~c~~~~-----g-~h~~~d~~~vEIvDp~~~~~vp  274 (445)
T TIGR03335       203 ESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTEGTM-CGECQAVA-----G-LHVPEDLVHLDVYDPRHQRFLP  274 (445)
T ss_pred             cCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhhhhh-eEEecCCC-----C-ccccCCceEEEEEcCCCCCCCc
Confidence            46899999999999999999999988 799999999999863 33332110     1 1123345789999988888999


Q ss_pred             CCCceEEEEecCcccccccccccCCCeEEcCceEEEc--CC---C----cEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFD--GD---G----QLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~--~~---g----~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +|+.|||++++-.... +...+ +-=-|+|||++++.  +.   |    .+...||.||+++++|.+|+|+
T Consensus       275 ~Ge~GELvvT~L~~~~-~r~~~-PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~  343 (445)
T TIGR03335       275 DGECGRIVLTTLLKPG-ERCGS-LLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRV  343 (445)
T ss_pred             CCCceEEEEEecCCCC-ccCCc-eEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHH
Confidence            9999999998754310 00000 00138999999963  22   2    1445799999999999999985

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.92  E-value=5e-24  Score=172.77  Aligned_cols=181  Identities=20%  Similarity=0.207  Sum_probs=139.8

Q ss_pred             ccccCCC--CcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            6 QETAGEL--DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         6 ~~~~~~~--~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      +.++.+.  .|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++..  +++.++|++++.+.+..    
T Consensus       129 ~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----  202 (386)
T TIGR02372       129 KILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----  202 (386)
T ss_pred             HHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----
Confidence            3455543  468999999999999877688899999999998888888888877643  78999999999997642    


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      ..+++++. +++|+++++++.+.+.+. +...+++.||+||+++++....       ....++|+|++++.+   +++..
T Consensus       203 ~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-------~~~~~~~~p~~~~~~---~~~~~  270 (386)
T TIGR02372       203 YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-------PDDPFRLLPDLACFA---DTLSS  270 (386)
T ss_pred             cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-------CCCCcccCCCccccC---CCccC
Confidence            33566775 678999999999999885 3357999999999987654321       123456777766543   11110


Q ss_pred             CCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                                 .+            ...|++|||+++++++|.+++.||.||+||++|++|+|.
T Consensus       271 -----------~g------------~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~  311 (386)
T TIGR02372       271 -----------AG------------LARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPG  311 (386)
T ss_pred             -----------CC------------ccceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHH
Confidence                       01            123689999999999999999999999999999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=3.1e-22  Score=173.22  Aligned_cols=219  Identities=21%  Similarity=0.241  Sum_probs=180.0

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      .+.+..+..|+++...++++..+... ++.++..|+++++.+.   .++..+.+.+.++++|.+..+|..+..++.....
T Consensus       399 ~~~~~~~~~d~~l~~~s~~fD~~~~~-~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~  477 (642)
T COG1020         399 GARFGLDADDRVLALASLSFDASVFE-IFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALA  477 (642)
T ss_pred             HHhcCCCcccEEeecCCcccchhHHH-HHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhh
Confidence            34588999999999999999988887 8999999999999874   5899999999999999999999999988876322


Q ss_pred             CC--CCCCCceEEEEcccCCCHHHHHHHHHhCC-CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeC
Q 027096           82 KK--FDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        82 ~~--~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~  158 (228)
                      ..  .....+|.++++|+.++.++.+++....+ ...+.|.||+||+.................++|.|+++..+.++| 
T Consensus       478 ~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-  556 (642)
T COG1020         478 PDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-  556 (642)
T ss_pred             ccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-
Confidence            22  22235899999999999999999888764 578999999999666554433222122146899999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          159 DTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      +..++++.|..||+++.|..+..       .+.+.|..+.+|+|||+++...+|.+.++||.|+++|++|.+|.
T Consensus       557 ~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Rie  630 (642)
T COG1020         557 QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIE  630 (642)
T ss_pred             CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecC
Confidence            88999999999999999988876       23333322248999999999999999999999999999999983

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.88  E-value=3.6e-21  Score=153.96  Aligned_cols=207  Identities=20%  Similarity=0.150  Sum_probs=157.1

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC--CC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--FD   85 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~   85 (228)
                      .+...+|++..+.-..--.|.....+.+---|++++...+-+.+.-+.++..+++|.+.++|+++..+++..+...  ..
T Consensus       129 ~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~  208 (438)
T COG1541         129 AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD  208 (438)
T ss_pred             ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh
Confidence            5677888887766632222222224555557888887766688999999999999999999999999988765442  33


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCce-eeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA-TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~-~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      -.++|.+++|+|+++++.++.+.+.| +++.+++||+||..+.. ..|....      -..-......++++||++++.+
T Consensus       209 ~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGltE~~g~g~~eC~~~~------glhi~eD~~~~Ei~dP~t~e~l  281 (438)
T COG1541         209 KLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTEGFGPGAGECTERN------GLHIWEDHFIFEIVDPETGEQL  281 (438)
T ss_pred             hcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccccccCCccccccccc------CCCcchhhceeeeecCCcCccC
Confidence            45799999999999999999999999 89999999999987663 2232211      1111345678999999999999


Q ss_pred             CCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCC----C-----cEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGD----G-----QLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g-----~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++|+.|||++++-.-.     .+ +-=-|+|||+..+.++    |     ...+.||.||++++.|.+|+|+
T Consensus       282 ~dge~GelV~T~L~~~-----~~-PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~  347 (438)
T COG1541         282 PDGERGELVITTLTKE-----GM-PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPS  347 (438)
T ss_pred             CCCCeeEEEEEecccc-----Cc-ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHH
Confidence            9999999999874421     11 1114999999998653    2     2579999999999999999996

>PTZ00297 pantothenate kinase; Provisional

Probab=99.68  E-value=3.8e-16  Score=142.62  Aligned_cols=187  Identities=15%  Similarity=0.105  Sum_probs=131.4

Q ss_pred             cCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC----C---
Q 027096            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL----V---   81 (228)
Q Consensus         9 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~----~---   81 (228)
                      ...++|++++.+|++|+++... .+.+++.|+++..   +++..+++.|+++++|+++++|.+++.+.+...    .   
T Consensus       641 ~~~~~D~~Ls~LPLaHI~er~~-~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~  716 (1452)
T PTZ00297        641 SSFKKHLMVHFTPFAMLFNRVF-VLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSA  716 (1452)
T ss_pred             CCCCCCEEEEechHHHHHHHHH-HHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhH
Confidence            3467899999999999999655 6778999999864   478999999999999999999999997754210    0   


Q ss_pred             --------------------CCC---------------CCCCceEEEEccc--CCCHHHHHHHHHhCCCCeEEecccccc
Q 027096           82 --------------------KKF---------------DLSSLKLVGSGAA--PLGKELMEECAKNVPSATVIQGYGLTE  124 (228)
Q Consensus        82 --------------------~~~---------------~~~~lr~~~~~G~--~l~~~~~~~~~~~~~~~~l~~~yG~tE  124 (228)
                                          ...               .-.++|.+++||.  +++..+.+       +.++...||.||
T Consensus       717 ~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~-------~i~i~~g~glTE  789 (1452)
T PTZ00297        717 VYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE-------HISVCYVPCLRE  789 (1452)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-------CceEEEecceEE
Confidence                                000               0046888888873  44433332       467888999999


Q ss_pred             cCCceeeccCCCCCCCCCCccccCCCceEEEEeC-CCCCCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcC
Q 027096          125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDG  203 (228)
Q Consensus       125 ~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~-~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~  203 (228)
                      ...   .....    .....|.|+|+++++|.+. +.+..   +..|||++++..--..+.+.  .++|         .+
T Consensus       790 ~~~---~~~~~----~~~~~G~PlpgvEvKI~~~~E~~~~---~~~GEIlvr~~kdpe~T~e~--~~gW---------~~  848 (1452)
T PTZ00297        790 VFF---LPSEG----VFCVDGTPAPSLQVDLEPFDEPSDG---AGIGQLVLAKKGEPRRTLPI--AAQW---------KR  848 (1452)
T ss_pred             eee---ecCCC----CcccCCeecCceEEEEcccccccCC---CCCCeEEEEECCChHHHHHh--hCcC---------cc
Confidence            532   22211    1123499999999999873 22221   23599999875211122221  1344         47


Q ss_pred             CCcEEEecccCCceee-cCeEeecC
Q 027096          204 DGQLYVVDRIKELIKY-KGFQVTSN  227 (228)
Q Consensus       204 ~g~~~~~GR~~d~i~~-~G~~v~p~  227 (228)
                      ||.|+|.||++|+||. +|++|+|+
T Consensus       849 dG~L~IidRkKdlikls~GEyVaP~  873 (1452)
T PTZ00297        849 DRTLRLLGPPLGILLPVAYEYVIAA  873 (1452)
T ss_pred             CCeEEEEeccccceECCCCcEEcHH
Confidence            8999999999999999 99999996

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.57  E-value=3.2e-14  Score=116.36  Aligned_cols=155  Identities=15%  Similarity=0.075  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCC
Q 027096           48 FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG  127 (228)
Q Consensus        48 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~  127 (228)
                      .+.+..++.|++++++++.+.|+.+..|++..+..... .+++.++++||.++++..+.+.+.| ++++++.||+|| |.
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~  250 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GF  250 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hh
Confidence            46788999999999999999999999998864433333 4689999999999999999999999 799999999999 65


Q ss_pred             ceeeccCCCCCCCCCCccccCC-CceEE--EEeCCCCCCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCC
Q 027096          128 IATMENSFAGSRNIGSAGALAP-GVEAL--IVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGD  204 (228)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~p~~-~~~~~--i~d~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~  204 (228)
                      ++..|...       . -+..+ .+.++  ++| ++++       ++.+|++-.....+..      -|+|||++...++
T Consensus       251 la~eC~~g-------~-lHl~ed~~~vE~~ivD-~~~~-------~~~ViT~L~n~~~PlI------RYrtGD~~~~~~~  308 (430)
T TIGR02304       251 LASTCRCG-------T-LHLNEDLVHIEKQYLD-EHKR-------FVPIITDFTRTTQPIV------RYRLNDILVESEQ  308 (430)
T ss_pred             eEEecCCC-------C-EEEccccEEEEeeEEC-CCCc-------eEEEEecCCCccceEE------eeeCCCEEEeCCC
Confidence            55444211       1 11222 23344  778 3343       3446655332111111      3899999887443


Q ss_pred             ----Cc----E-EEecccCCceee---cCeEe--ecC
Q 027096          205 ----GQ----L-YVVDRIKELIKY---KGFQV--TSN  227 (228)
Q Consensus       205 ----g~----~-~~~GR~~d~i~~---~G~~v--~p~  227 (228)
                          |.    + .+.||.||+++.   +|..+  +|.
T Consensus       309 ~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~  345 (430)
T TIGR02304       309 PCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPD  345 (430)
T ss_pred             CCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHH
Confidence                22    3 488999999985   45544  663

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.04  E-value=5.5e-09  Score=91.32  Aligned_cols=219  Identities=19%  Similarity=0.214  Sum_probs=146.8

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      ..+.+..-++...+.+-..|+..+++..+++|...+++++    -++..++..++++++.-++.+=+.+....+......
T Consensus       979 ~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~ 1058 (1363)
T KOG3628|consen  979 CQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSV 1058 (1363)
T ss_pred             HccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccccc
Confidence            3455555566667777777888889999999999888864    489999999999999988887776665554322111


Q ss_pred             -------CCCCCceEEEEcccCCCHHHHHHHHHhCCC-----CeEEecccccccCCceeeccC----------CCC----
Q 027096           84 -------FDLSSLKLVGSGAAPLGKELMEECAKNVPS-----ATVIQGYGLTETSGIATMENS----------FAG----  137 (228)
Q Consensus        84 -------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~-----~~l~~~yG~tE~g~~~~~~~~----------~~~----  137 (228)
                             .+.++ ..++..-++...++.+-+.+.|..     ..+.-.|++-=--.++.....          ...    
T Consensus      1059 enl~~~gnn~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~g 1137 (1363)
T KOG3628|consen 1059 ENLSKRGNNTSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREG 1137 (1363)
T ss_pred             chhhhhhccccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhcc
Confidence                   12222 445556777788888888776621     123344443322222221000          000    


Q ss_pred             -----------CCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCccccc-----------------ccccccC
Q 027096          138 -----------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-----------------TKLTIDK  189 (228)
Q Consensus       138 -----------~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~-----------------~~~~~~~  189 (228)
                                 .......|...+++++.++++|+..+|.+|+.||||+.|.+....                 .......
T Consensus      1138 rV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~ 1217 (1363)
T KOG3628|consen 1138 RVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLG 1217 (1363)
T ss_pred             ceeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhcccccccc
Confidence                       000112377789999999999999999999999999999765431                 0111123


Q ss_pred             CCeEEcCceEEEc------CC----CcEEEecccCCceeecCeEeecC
Q 027096          190 KGWVHTGDLGYFD------GD----GQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       190 ~~~~~TGD~~~~~------~~----g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ..|-||||+|+..      +.    ..+|++|-.++.+-++|.+-+|.
T Consensus      1218 ~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~ 1265 (1363)
T KOG3628|consen 1218 KSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPS 1265 (1363)
T ss_pred             ccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcc
Confidence            4599999999972      22    35999999999999999887764

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.99  E-value=9.7e-09  Score=91.05  Aligned_cols=219  Identities=15%  Similarity=0.044  Sum_probs=126.0

Q ss_pred             ecccccCCCCcEEEEecc-h-hhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhc
Q 027096            4 MDQETAGELDYVFLCVLP-L-FHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKH   78 (228)
Q Consensus         4 ~~~~~~~~~~d~~~~~~p-~-~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~   78 (228)
                      +...+..+..+++ .+.+ . ++..-... ....|++|+.+..+..   -++.++.+.+++++++..+.+|++.++++..
T Consensus       228 ~~~~f~~t~s~~~-~~~~~~~~~d~i~~~-~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~  305 (1032)
T KOG1178|consen  228 MFTTFPPTGSDRF-TFKTSVYFDDTIQKF-IGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAI  305 (1032)
T ss_pred             ccccCCcCccchh-hhhheeecccchHHH-HhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhh
Confidence            3444566666654 2222 2 23322222 5566777776666543   2479999999999999999999997777654


Q ss_pred             CCC-------------CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCC--CCCCC
Q 027096           79 GLV-------------KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS--RNIGS  143 (228)
Q Consensus        79 ~~~-------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~--~~~~~  143 (228)
                      ...             ...+.++|+..+.+|++....+...+...+...-...-|+++|..............  .....
T Consensus       306 ~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~  385 (1032)
T KOG1178|consen  306 LTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNEN  385 (1032)
T ss_pred             cCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceeccee
Confidence            321             112335799999999999988888666655334444558888876655432211100  00111


Q ss_pred             ccccCCC-------ceEEEEeCCCCCCCCCCCceEEEEec----Cccccc--c------cccc---cCCCeEEcCceEEE
Q 027096          144 AGALAPG-------VEALIVSVDTQKPLPPNQLGEIWLRG----PNMMRA--T------KLTI---DKKGWVHTGDLGYF  201 (228)
Q Consensus       144 ~g~p~~~-------~~~~i~d~~~~~~~~~g~~Gel~v~~----~~~~~~--~------~~~~---~~~~~~~TGD~~~~  201 (228)
                      +..+-.+       ..+.+.. ..+.+.+.++.+......    .+....  +      ...+   ..+..|+|||+|+.
T Consensus       386 v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~  464 (1032)
T KOG1178|consen  386 VYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDGYSTPENFLPNFLTVDGVKARIYRTGDNGRS  464 (1032)
T ss_pred             EEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeeccccchhhcCCcccccccchhhccccccccee
Confidence            1111111       1112222 233333333222221111    111111  1      1111   12458999999998


Q ss_pred             cCCCcEEEecccCCceeecCeEee
Q 027096          202 DGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       202 ~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      -.+|.+.+.||.|+.||.+|.++-
T Consensus       465 l~ng~l~~~GR~d~qIK~rG~Ri~  488 (1032)
T KOG1178|consen  465 LKNGGLEISGRADRQIKDRGVRIE  488 (1032)
T ss_pred             ecCCCEEEEEeccceEEEccEEEe
Confidence            889999999999999999999984

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.83  E-value=1.6e-07  Score=75.66  Aligned_cols=163  Identities=23%  Similarity=0.278  Sum_probs=105.9

Q ss_pred             hhcCcEEEEcC-CCCHHHHHHHH----HhcCceEEEechHHHHHHHhcCCCCC--CCCC-CceEEEEcc------cCCC-
Q 027096           36 LQKGSCIILMA-KFDLEMFLRAI----EKHRVTHIWVVPPLILALAKHGLVKK--FDLS-SLKLVGSGA------APLG-  100 (228)
Q Consensus        36 l~~G~~~~~~~-~~~~~~~~~~i----~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~~-~lr~~~~~G------~~l~-  100 (228)
                      +..++...+-. .++.+.+...+    .+.++..++.+|.++..++...+...  ..++ ..+.+..||      +.++ 
T Consensus       162 ~~~~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r  241 (365)
T PF04443_consen  162 LFFGSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSR  241 (365)
T ss_pred             cccCceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCH
Confidence            44556644422 36777666655    35568889999988777765433232  2333 455555554      5565 


Q ss_pred             HHHHHHHHHhCCC---CeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecC
Q 027096          101 KELMEECAKNVPS---ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP  177 (228)
Q Consensus       101 ~~~~~~~~~~~~~---~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~  177 (228)
                      ++..+.+.+.|+-   ..+++.||+||.......+...       .  .+.|.- +.+.|+++-++++.|+.|-|.+-++
T Consensus       242 ~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~-------~--~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl  311 (365)
T PF04443_consen  242 EEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG-------H--FHVPPW-VIIRDPETLEPLPPGETGLIQVIDL  311 (365)
T ss_pred             HHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC-------c--ccCCCe-EEEECCCCCcCCCCCCeeEEEEEcc
Confidence            5667777777733   4799999999977654433111       1  122222 7777989999999999999988765


Q ss_pred             cccccccccccCCCeEEcCceEEEcCC--------CcEEEecccCC
Q 027096          178 NMMRATKLTIDKKGWVHTGDLGYFDGD--------GQLYVVDRIKE  215 (228)
Q Consensus       178 ~~~~~~~~~~~~~~~~~TGD~~~~~~~--------g~~~~~GR~~d  215 (228)
                      ....       .-+..-|.|+|.+.++        .++.++||.+.
T Consensus       312 ~~~s-------~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  312 ANTS-------YPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             cccC-------CCcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            5432       3344779999987543        26999999874

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.67  E-value=1.8e-07  Score=82.16  Aligned_cols=216  Identities=19%  Similarity=0.164  Sum_probs=139.9

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHh----c
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAK----H   78 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~----~   78 (228)
                      ..++....+.++.-...+...|+...++.+|++|.|.+..|+   ..+..+.+.+..++++++..--..+.+...    .
T Consensus       303 ~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~  382 (1363)
T KOG3628|consen  303 HVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQED  382 (1363)
T ss_pred             hccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCC
Confidence            345667778888888888888999999999999999999986   678899999999999987654333332221    1


Q ss_pred             C-------CCCCCCCCCceEEEEcccCCCHHHHHHHHHhC----C-----------------CCeEEecccccccCCcee
Q 027096           79 G-------LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV----P-----------------SATVIQGYGLTETSGIAT  130 (228)
Q Consensus        79 ~-------~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~----~-----------------~~~l~~~yG~tE~g~~~~  130 (228)
                      +       +.+..+++++|.+++.-..+..+..+-..+.|    +                 +.-.+..=+++|.+....
T Consensus       383 p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~  462 (1363)
T KOG3628|consen  383 PKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSI  462 (1363)
T ss_pred             cccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccc
Confidence            1       11225678999999988888887765554443    1                 111223333455555443


Q ss_pred             eccCCCC----------------------------CCCCCCccccCCC-ceEEEEeCCCCCCCCCCCceEEEEecCcccc
Q 027096          131 MENSFAG----------------------------SRNIGSAGALAPG-VEALIVSVDTQKPLPPNQLGEIWLRGPNMMR  181 (228)
Q Consensus       131 ~~~~~~~----------------------------~~~~~~~g~p~~~-~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~  181 (228)
                      ..+....                            ......++...++ +.+.++++++.+.|..++.|||||.+++...
T Consensus       463 r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~  542 (1363)
T KOG3628|consen  463 RRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGK  542 (1363)
T ss_pred             cCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCccc
Confidence            3322110                            0112234554544 6778888888999999999999999988765


Q ss_pred             ----------cccccc---------cCCCeEEcCceEEEcCCCcEEEecccCCceeecC
Q 027096          182 ----------ATKLTI---------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG  221 (228)
Q Consensus       182 ----------~~~~~~---------~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G  221 (228)
                                .+++..         ....+.|||=+|++..++.+++.++.|......|
T Consensus       543 ~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~vl~~k~d~llq~~~  601 (1363)
T KOG3628|consen  543 LFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYVLGLKEDGLLQVSG  601 (1363)
T ss_pred             ceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCeEEEEEechhhhhhhhh
Confidence                      111111         1123899999999976654444445444433344

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=98.59  E-value=1.1e-07  Score=72.10  Aligned_cols=57  Identities=19%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCce
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT   63 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t   63 (228)
                      ..++++++|+++ .+|++|..|+...++.+|..|+++++.++|++..+++.|++++||
T Consensus       171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            456789999999 999999999988899999999999999999999999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.35  E-value=3.6e-07  Score=73.63  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=30.7

Q ss_pred             CCCeEEcCceEEE-cCCCcEEEecccCCceeecC---eEeecC
Q 027096          189 KKGWVHTGDLGYF-DGDGQLYVVDRIKELIKYKG---FQVTSN  227 (228)
Q Consensus       189 ~~~~~~TGD~~~~-~~~g~~~~~GR~~d~i~~~G---~~v~p~  227 (228)
                      .+|||+|||+|++ |++|.+++.||.+     +|   .||+|+
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~  244 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA  244 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH
Confidence            6799999999998 7999999999998     78   788884

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.97  E-value=5.9e-05  Score=64.22  Aligned_cols=126  Identities=17%  Similarity=0.129  Sum_probs=69.2

Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCe-EEecccccccCCceeeccCCCCCCCCCCccccCCC-ceEEEEeCCC---
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSAT-VIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG-VEALIVSVDT---  160 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~-l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~-~~~~i~d~~~---  160 (228)
                      .++|+.+.+.+..-...-.+++++.+|++. +...|++||+ .+.......    ....+-.|-.+ .|+.-++...   
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg-~i~i~~~~~----~~~~~l~~~~~ffEFip~~~~~~~~  340 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEG-FIGIPLDPE----DPGYVLAPDSGFFEFIPVDEDEQNP  340 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTE-EEEEES-CC----C--EEE-TTSSEEEEEE-STT----
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccce-EEEEecCCC----CCceEeecCCeEEEEEeccCCcccc
Confidence            578997666555555677778888887755 4589999995 333322211    11111112122 2333333111   


Q ss_pred             ---C-----CCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEc--CCC--cEEEecccCCceeecCeEeec
Q 027096          161 ---Q-----KPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFD--GDG--QLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       161 ---~-----~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~--~~g--~~~~~GR~~d~i~~~G~~v~p  226 (228)
                         +     ..++.|+.-||+|++..-.          --|+.||++++.  .++  .+.|+||.+.++++.|+|++.
T Consensus       341 ~~~~~~l~~~ele~G~~YelviTt~~GL----------yRY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e  408 (528)
T PF03321_consen  341 SEQPKTLLLHELEVGEEYELVITTNSGL----------YRYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSE  408 (528)
T ss_dssp             ---SSSEEGGG--TT-EEEEEEESTTS-----------SSEEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEH
T ss_pred             cCCCceecHHHhcCCCeEEEEEecccce----------eeeecCCEEEEeeccCCCcEEEEeccCCceeecceeecCH
Confidence               2     2456788889998763311          139999999974  233  799999999999999999874

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.41  E-value=0.0029  Score=54.35  Aligned_cols=127  Identities=14%  Similarity=0.050  Sum_probs=77.3

Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEE-ecccccccCCceeeccCCCCCCCCCC-ccccCCC---ceEEEEeC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGS-AGALAPG---VEALIVSV  158 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~g~~~~~~~~~~~~~~~~~-~g~p~~~---~~~~i~d~  158 (228)
                      ...+++++|-+.-..-...-...++.-++++++. ..|++||+-. .....+.   ..+.. .....|+   .|+.-++.
T Consensus       301 rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~-ginl~P~---~~p~~~sy~L~p~~~yFEFip~~~  376 (612)
T PLN02620        301 RLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYF-GVNLNPL---CKPSEVSYTLIPTMAYFEFLPVHR  376 (612)
T ss_pred             HhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEE-EeccCCC---CCcccceeeecCCcEEEEEeeccC
Confidence            3457788776655555566667777777787655 8999999533 3322111   01111 1122233   12322221


Q ss_pred             CC-----------------CC-----CCCCCCceEEEEecCcccccccccccCCC--eEEcCceEEE----cCCCcEEEe
Q 027096          159 DT-----------------QK-----PLPPNQLGEIWLRGPNMMRATKLTIDKKG--WVHTGDLGYF----DGDGQLYVV  210 (228)
Q Consensus       159 ~~-----------------~~-----~~~~g~~Gel~v~~~~~~~~~~~~~~~~~--~~~TGD~~~~----~~~g~~~~~  210 (228)
                      ++                 ++     .++.|+.-||+|+.            ..|  -|+.||+.+.    +..-.+.|+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt------------~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv  444 (612)
T PLN02620        377 NNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT------------YAGLYRYRVGDVLRVAGFKNKAPQFSFI  444 (612)
T ss_pred             cccccccccccccccccccCccccHHHccCCCeEEEEEEe------------cCceEEEecCCEEEEeeecCCCceEEEE
Confidence            11                 11     24677778888865            223  3899999987    345689999


Q ss_pred             cccCCceeecCeEeec
Q 027096          211 DRIKELIKYKGFQVTS  226 (228)
Q Consensus       211 GR~~d~i~~~G~~v~p  226 (228)
                      +|.+.+..+.|.|+..
T Consensus       445 ~R~~~~lsi~gEK~tE  460 (612)
T PLN02620        445 CRKNVVLSIDSDKTDE  460 (612)
T ss_pred             eecCceeecccccCCH
Confidence            9999999999998764

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.38  E-value=0.0086  Score=51.74  Aligned_cols=122  Identities=11%  Similarity=0.076  Sum_probs=71.8

Q ss_pred             CCC---ceEEEEcccCCCHHHHHHHHHhCCCCe-EEecccccccCCceeeccCCCCCCCCCCccc-c-CCCceEEEEeCC
Q 027096           86 LSS---LKLVGSGAAPLGKELMEECAKNVPSAT-VIQGYGLTETSGIATMENSFAGSRNIGSAGA-L-APGVEALIVSVD  159 (228)
Q Consensus        86 ~~~---lr~~~~~G~~l~~~~~~~~~~~~~~~~-l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~-p-~~~~~~~i~d~~  159 (228)
                      .++   +..++.||..   .-.+.++..+++.. +...|++||+. +........   .+..++. . ..+.-.+-++.+
T Consensus       301 WPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~-~gi~~~~~~---~p~~~~~~l~~~~~ffEFiP~~  373 (597)
T PLN02249        301 WPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESY-FGINLNPMC---KPSEVSYTIMPNMAYFEFLPHN  373 (597)
T ss_pred             CCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceE-EEeecCCCC---CCCCcceEecCCcEEEEeeecc
Confidence            466   5555555533   56677777776654 56999999953 233221110   0011111 0 113333333211


Q ss_pred             -CC------------CCCCCCCceEEEEecCcccccccccccCCC--eEEcCceEEEc----CCCcEEEecccCCceeec
Q 027096          160 -TQ------------KPLPPNQLGEIWLRGPNMMRATKLTIDKKG--WVHTGDLGYFD----GDGQLYVVDRIKELIKYK  220 (228)
Q Consensus       160 -~~------------~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~--~~~TGD~~~~~----~~g~~~~~GR~~d~i~~~  220 (228)
                       .+            ..++.|+.-+|+|++            ..|  -|+.||.+++.    .--++.|+||.+.++++.
T Consensus       374 ~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT------------~~GLyRY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~  441 (597)
T PLN02249        374 HDGDGALDETSLVELADVEVGKEYELVITT------------YAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIE  441 (597)
T ss_pred             cCCcccCCCCcEecHHHcCCCCeEEEEEEc------------ccceeEeecCCEEEEeeccCCCcEEEEEccCCcceecc
Confidence             11            134567777888865            333  39999999984    235799999999999999


Q ss_pred             CeEeec
Q 027096          221 GFQVTS  226 (228)
Q Consensus       221 G~~v~p  226 (228)
                      |+++..
T Consensus       442 GEKl~e  447 (597)
T PLN02249        442 SDKTDE  447 (597)
T ss_pred             cccCCH
Confidence            999864

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.31  E-value=0.0028  Score=54.40  Aligned_cols=128  Identities=11%  Similarity=0.045  Sum_probs=78.2

Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEE-ecccccccCCceeeccCCCCCCCCCCccccCCCc-eEEEEeCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSAGALAPGV-EALIVSVDTQ  161 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~-~~~i~d~~~~  161 (228)
                      ...++++.|-+.-..-...-..+++.-++++++. ..|++||+-. .....+.....  .......|+. -++-++.+++
T Consensus       290 rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~-ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~  366 (606)
T PLN02247        290 RLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYF-GINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKN  366 (606)
T ss_pred             HhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEE-EeccCcCCCcc--CCceeecCCcEEEEEeecCCC
Confidence            3457788877655455666777887777887766 6999999533 33221110000  1112222331 2233321111


Q ss_pred             -----------------------------CCCCCCCceEEEEecCcccccccccccCCC--eEEcCceEEE----cCCCc
Q 027096          162 -----------------------------KPLPPNQLGEIWLRGPNMMRATKLTIDKKG--WVHTGDLGYF----DGDGQ  206 (228)
Q Consensus       162 -----------------------------~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~--~~~TGD~~~~----~~~g~  206 (228)
                                                   ..++.|+.-||+|+.            ..|  -|+.||+.+.    +..-.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt------------~~GLYRYrlGDvv~V~GF~n~~P~  434 (606)
T PLN02247        367 NGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT------------FTGLYRYRVGDILMVTGFYNNAPQ  434 (606)
T ss_pred             cccccccccccccccccccccccCceecHHHccCCCeEEEEEEe------------cCceEEEecCCEEEEeeecCCCce
Confidence                                         134567777888765            233  4899999886    44568


Q ss_pred             EEEecccCCceeecCeEeec
Q 027096          207 LYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       207 ~~~~GR~~d~i~~~G~~v~p  226 (228)
                      +.|++|.+.+..+.|.|+..
T Consensus       435 ~~Fv~R~~~vlsi~gEK~tE  454 (606)
T PLN02247        435 FRFVQRRNVVLSIDTDKTNE  454 (606)
T ss_pred             EEEEecCCceeecccccCCH
Confidence            99999999999999998764

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=86.10  E-value=7.9  Score=26.81  Aligned_cols=102  Identities=17%  Similarity=0.146  Sum_probs=59.8

Q ss_pred             cEEEEecch-hhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH------HHHHHHhcCCCCCCC
Q 027096           14 YVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP------LILALAKHGLVKKFD   85 (228)
Q Consensus        14 d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~------~~~~l~~~~~~~~~~   85 (228)
                      .+++...+- .|..|........-..|-.++... ...++++.+.+.+++++++.++-.      .++.+.+..+  ...
T Consensus         5 ~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~--~~~   82 (137)
T PRK02261          5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCI--EAG   82 (137)
T ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHH--hcC
Confidence            344444443 788888775556667788888775 467899999999999998776532      2233333221  122


Q ss_pred             CCCceEEEEcccCC-----CHHHHHHHHHhCCCCeEEecccc
Q 027096           86 LSSLKLVGSGAAPL-----GKELMEECAKNVPSATVIQGYGL  122 (228)
Q Consensus        86 ~~~lr~~~~~G~~l-----~~~~~~~~~~~~~~~~l~~~yG~  122 (228)
                      ++.+ .+++||...     +++..+++++.  +  +-..|++
T Consensus        83 ~~~~-~i~vGG~~~~~~~~~~~~~~~l~~~--G--~~~vf~~  119 (137)
T PRK02261         83 LGDI-LLYVGGNLVVGKHDFEEVEKKFKEM--G--FDRVFPP  119 (137)
T ss_pred             CCCC-eEEEECCCCCCccChHHHHHHHHHc--C--CCEEECc
Confidence            3344 466666553     34445566554  3  3445553

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=84.12  E-value=8.9  Score=32.55  Aligned_cols=88  Identities=14%  Similarity=0.045  Sum_probs=63.4

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH-----HHHhc--
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL-----ALAKH--   78 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~-----~l~~~--   78 (228)
                      .+|++++|++..+.|-+.-.-+  ..+++-..|...+... .....++--.|.+.++..++..|.+-.     .+.+.  
T Consensus        96 ~lGL~kGDrVgvwgpN~~~w~l--~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icP  173 (596)
T KOG1177|consen   96 SLGLKKGDRVGVWGPNSYEWVL--CQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICP  173 (596)
T ss_pred             hhcCCCCCEEEEecCChHHHHH--HHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhH
Confidence            4799999999999997664333  3566777788888774 466777888899999999998886532     23321  


Q ss_pred             -------CCCCCCCCCCceEEEEcc
Q 027096           79 -------GLVKKFDLSSLKLVGSGA   96 (228)
Q Consensus        79 -------~~~~~~~~~~lr~~~~~G   96 (228)
                             ...+...++.+++++..+
T Consensus       174 Ev~~~~~G~lkS~~lp~lthvi~~~  198 (596)
T KOG1177|consen  174 EVMRGDPGQLKSELLPELTHVILAD  198 (596)
T ss_pred             HhhcCCCccccccccccceEEEecC
Confidence                   123445678899988877

>PLN02736 long-chain acyl-CoA synthetase

Probab=82.44  E-value=16  Score=32.44  Aligned_cols=83  Identities=8%  Similarity=0.002  Sum_probs=61.1

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..++.++|++...++-..-..  ...++++..|+.++... ..+++.+..++++.++..+++.+..+..+.....    .
T Consensus        97 ~~Gv~~gd~Vai~~~n~~e~~--~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~----~  170 (651)
T PLN02736         97 QHGIPKGACVGLYFINRPEWL--IVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS----E  170 (651)
T ss_pred             HhCCCCCCEEEEEcCCCHHHH--HHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh----c
Confidence            368899999998888666533  33678889999998774 5789999999999999999998877666544211    2


Q ss_pred             CCCceEEEEc
Q 027096           86 LSSLKLVGSG   95 (228)
Q Consensus        86 ~~~lr~~~~~   95 (228)
                      ++.++.++..
T Consensus       171 ~~~l~~ii~~  180 (651)
T PLN02736        171 IPSVRLIVVV  180 (651)
T ss_pred             CCCceEEEEE
Confidence            3455555543

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=80.25  E-value=21  Score=32.08  Aligned_cols=84  Identities=10%  Similarity=0.030  Sum_probs=62.1

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      ..+++++|++...++-..-  +....++++..|+..+... ...++.+...+++.++..+++....+..+.+...    .
T Consensus       125 ~lG~~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~----~  198 (696)
T PLN02387        125 ALGHNKEERVAIFADTRAE--WLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISS----Q  198 (696)
T ss_pred             HhCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhh----c
Confidence            4588999999988886554  3334678899999999774 5789999999999999999998877776654321    2


Q ss_pred             CCCceEEEEcc
Q 027096           86 LSSLKLVGSGA   96 (228)
Q Consensus        86 ~~~lr~~~~~G   96 (228)
                      ++.++.++.-+
T Consensus       199 ~~~l~~ii~~~  209 (696)
T PLN02387        199 LETVKRVIYMD  209 (696)
T ss_pred             cCCceEEEEEC
Confidence            34566555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		3e-44
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-42
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-42
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		3e-42
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-42
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-42
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-41
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-41
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-41
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-41
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-22
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		5e-19
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		3e-17
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-16
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-16
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		4e-16
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		3e-15
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-14
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-13
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-11
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		1e-11
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		4e-11
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		5e-09
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		4e-08
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		5e-08
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		5e-07
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		3e-06
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		9e-05
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-04
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-04
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		7e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 143/223 (64%), Gaps = 12/223 (5%)
Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 328
Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M
Sbjct: 329 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388
Query: 132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR------- 181
              FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+       
Sbjct: 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPA 448
Query: 182 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           AT  TIDK GW+HTGD+G  D D +L++VDR+KELIKYKGFQV
Sbjct: 449 ATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 491

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 136/217 (62%), Gaps = 14/217 (6%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T++ +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
           K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+   I T E  
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+       ATK  I
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           D++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 135/217 (62%), Gaps = 14/217 (6%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
           K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+   I T E  
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+       ATK  I
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           D++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 9/219 (4%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  I+LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 268 DTAILTVIPFHHGFGM-FTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLF 326
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  LV K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+  A + 
Sbjct: 327 SFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTS-AIII 385
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKL 185
                    G+ G + P   A IV +DT K L  NQ GE+ ++GP +M+       AT  
Sbjct: 386 TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSA 445
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            IDK GW+H+GD+ Y+D DG  ++VDR+K LIKYKG+QV
Sbjct: 446 LIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQV 484

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 135/217 (62%), Gaps = 14/217 (6%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
           K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+   I T E  
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+       ATK  I
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           D++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/222 (45%), Positives = 143/222 (64%), Gaps = 12/222 (5%)
Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V LCVLP+FH++ L +++ CG L+ G+ I++M KF++   L  IEK++V+   VVPP+++
Sbjct: 225 VILCVLPMFHIYALNSIMLCG-LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMM 283
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           ++AK   + K DLSSL+++ SG APLGKEL +      P A + QGYG+TE   +  M  
Sbjct: 284 SIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCL 343
Query: 134 SFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------AT 183
           +FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+       AT
Sbjct: 344 AFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEAT 403
Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 225
             TIDK+GW+HTGD+GY D D +L++VDR+KELIKYKGFQV 
Sbjct: 404 SRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVA 445

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             LAK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 298 SFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKL 185
            +  G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M        AT  
Sbjct: 357 -TPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNA 415
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG QV
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQV 454

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKL 185
               G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M        AT  
Sbjct: 353 PE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 410
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 298 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 357
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKL 185
               G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M        AT  
Sbjct: 358 PE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 415
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 454

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM-------RATKL 185
               G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M        AT  
Sbjct: 353 PE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 410
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 113/221 (51%), Gaps = 24/221 (10%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++   Q Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLMLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261
Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +       +  L+SL+ V     P   E +E      P+AT    +G +ETSG++T    
Sbjct: 262 ILDQAAPAQ--LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLST---- 312
Query: 135 FAGSRN-IGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMR-------ATKL 185
           FA  R+   SAG   P     +  VD + +PLPP ++GEI LRGP + +       AT+ 
Sbjct: 313 FAPYRDRPKSAGR--PLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQH 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQV 224
              + GW HTGD+G FD DG L+   R   KELIK  G  V
Sbjct: 371 AF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENV 410

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L      I + KFD +  L      R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   + K      +L  SG+APL  +   E +     A V++ YG TET+      
Sbjct: 254 TRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHA-VLERYGXTETN--XNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKL 185
           N + G R  G+ G   PGV A +   +T K LP   +G I ++GPN+ +        TK 
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKS 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                G+  TGDLG  D  G ++++ R K+L+   GF V
Sbjct: 371 EFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNV 409

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 21  PLFHV--FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK- 77
           P FH   FGL  +    +  G+  ++   F+ E     IEK++ T  W VPP +  L   
Sbjct: 229 PXFHSAEFGLVNLX---VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 78  -HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQGYGLTETSGIAT 130
                K +D S LK+  +GA P+   L+E+  K      N P     Q +G TE     T
Sbjct: 286 LESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT 345
Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLT---- 186
                   ++  + G     +E  ++S++  + L   + GEI +RGPN+ +         
Sbjct: 346 TNPPLRLDKST-TQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKEN 404
Query: 187 -----IDKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                 D+KG  +  TGD+G+ D +G L+  DR+KE+IKYKG+ +
Sbjct: 405 QECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   +       ++L  SG+APL  +   E +     A V++ YG+TET+      
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN-------MMRATKL 185
           N + G R  G+ G   PGV A +   +T   LP   +G I + GPN       M   T  
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXS 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                G+  TGDLG  D  G ++++ R  +L+   GF V
Sbjct: 371 EFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   +       ++L  SG+APL  +   E +     A V++ YG+TET+      
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN-------MMRATKL 185
           N + G R  G+ G   PGV A +   +T   LP   +G I + GPN       M   T  
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXS 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                G+  TGDLG  D  G ++++ R  +L+   GF V
Sbjct: 371 EFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   +       ++L  SG+APL  +   E +     A V++ YG+TET+      
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN-------MMRATKL 185
           N + G R  G+ G   PGV A +   +T   LP   +G I + GPN       M   T  
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXS 370
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                G+  TGDLG  D  G ++++ R  +L+   GF V
Sbjct: 371 EFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 27/217 (12%)
Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           + D  +L VLP++H+ GL+V+    ++ G  + ++ KF+ E  L  I+  R+THI +VP 
Sbjct: 202 DRDTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQ 260
Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSG-- 127
            +  L + GL + ++L  + L   G A L   ++E   + N+P   +   +G+TET    
Sbjct: 261 TLNWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP---IYNSFGMTETCSQF 314
Query: 128 -IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRGPNMMRATKL 185
             AT E   A    +G   A          +VD +   P  +  GE+ ++G N+M     
Sbjct: 315 LTATPEMLHARPDTVGMPSA----------NVDVKIKNPNKEGHGELMIKGANVMNGYLY 364
Query: 186 TID-----KKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
             D     + G+ +TGD+   D +G + + DR K+LI
Sbjct: 365 PTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 15/217 (6%)
Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L  LP+FHV  L  +    + +G  +I M +FD       I + RV     VP ++  +
Sbjct: 214 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 272
Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
            +     + D    +   +G AP+ + L++   AKN+    V+QGY LTE+ G  T+  S
Sbjct: 273 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 329
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP-------NMMRATKLTI 187
               R  GSAG      +  +   D    +  +  GE+ ++         N   AT+   
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDAF 387
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           D  GW  TGD+G  D +G LY+ DR+K++I   G  V
Sbjct: 388 DN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 21/225 (9%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LPLFHV GL +   G L++G  +  + +F  E   R +     T ++ VP +   
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHR 256
Query: 75  LAK-----HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
           +A+       L K   L+  +L+ SG+A L     E  A       VI+ YG+TET  + 
Sbjct: 257 IAETLPADPELAKA--LAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTET--LM 311
Query: 130 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLRGPNMM------- 180
                  G    G+ G   PGVE  +V  D      L    +GEI +RGPN+        
Sbjct: 312 NTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRP 371
Query: 181 RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR-IKELIKYKGFQV 224
            AT     + G+  TGD+   D DG + +V R   +LIK  G+++
Sbjct: 372 DATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 15/204 (7%)
Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L  LP+FHV  L  +    + +G  +I M +FD       I + RV     VP ++  +
Sbjct: 200 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 258
Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
            +     + D    +   +G AP+ + L++   AKN+    V+QGY LTE+ G  T+  S
Sbjct: 259 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 315
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP-------NMMRATKLTI 187
               R  GSAG      +  +   D    +  +  GE+ ++         N   AT+   
Sbjct: 316 EDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDAF 373
Query: 188 DKKGWVHTGDLGYFDGDGQLYVVD 211
           D  GW  TGD+G  D +G LY+ D
Sbjct: 374 DN-GWFRTGDIGEIDDEGYLYIKD 396

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 48/253 (18%)
Query: 18  CV--LPLFHVFGLAVITCGQLQKGSCIILMAKFDLE----MFLRAIEKHRVTHIWVVPPL 71
           CV  LP +H  GL       +     +  +   D       +L+ I K+R T + V PP 
Sbjct: 220 CVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGT-VSVAPPF 278
Query: 72  ILALAKHGLVKK----FDLSSLKLVGSGAAPLGKELMEECAK-----NVPSATVIQGYGL 122
              L +  + +K     DLS  ++ G GA P+  E + + A+     N  + T    YGL
Sbjct: 279 GYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGL 338
Query: 123 TETSGIATMENSFAG------SRNI--GSAGALAPGVEALIVS--VDTQKPLPPNQL--- 169
            E +   +  +  +G       R+I      A+APG E   VS  V+  K LP + +   
Sbjct: 339 AENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIR 398
Query: 170 ------------GEIWLRGPNMM------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVD 211
                       G I + GP++       + ++  I   GW+ TGDLGY   DG LYV  
Sbjct: 399 NEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTG 457
Query: 212 RIKELIKYKGFQV 224
           RIK+LI  +G  +
Sbjct: 458 RIKDLIIIRGRNI 470

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 25/232 (10%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L V+P+FHV    +     L     ++   + D    +   +   VT    VP + LA
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 280
Query: 75  LAKHGLVKKFDLSSLK--LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA +       L +L+  +VG  AAP  + L+    +      V QGYGLTETS +    
Sbjct: 281 LADYLESTGHRLKTLRRLVVGGSAAP--RSLIARFERM--GVEVRQGYGLTETSPVVVQN 336
Query: 133 ------NSFAGSRNI---GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMM- 180
                  S +    +      G   P V  L V+ +  +P+P +   LGE+ L+GP +  
Sbjct: 337 FVKSHLESLSEEEKLTLKAKTGLPIPLVR-LRVADEEGRPVPKDGKALGEVQLKGPWITG 395
Query: 181 ------RATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
                  AT+  +   G+  TGD+  +D +G + + DR+K+LIK  G  ++S
Sbjct: 396 GYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 18/223 (8%)
Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            LC LP  H F L+     G L  G C+++    +       I++H+V    +VP  ++ 
Sbjct: 235 LLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIM 294
Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP---SATVIQGYGLTETSGIATM 131
             +     K  + SLKL+  G    G    E  A+ VP   +  + Q +G+ E  G+   
Sbjct: 295 WLEKAAQYKDQIQSLKLLQVG----GASFPESLARQVPEVLNCKLQQVFGMAE--GLVNY 348
Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMM-------RAT 183
                    I +        +  I  VD Q + +P  ++G +  RGP             
Sbjct: 349 TRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 226
               D+  + ++GDL     DG L VV RIK+ I   G ++ S
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIAS 451

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 24/228 (10%)
Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           +LC +P  H + ++   + G    G  ++L A     +    IEKH+V    +VPP + +
Sbjct: 228 YLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-S 286
Query: 75  LAKHGLVK---KFDLSSLKLVGSGAAPLGKELMEECAKNVPS---ATVIQGYGLTE-TSG 127
           L    L++   +  L+SLKL+  G A L   L    A  +P+     + Q +G+ E    
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATL----AARIPAEIGCQLQQVFGMAEGLVN 342
Query: 128 IATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA---- 182
              +++S    + I + G  + P  E  +   +   PLP  ++G +  RGP   R     
Sbjct: 343 YTRLDDS--AEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLMTRGPYTFRGYYKS 399
Query: 183 ---TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
                   D  G+  +GDL   D +G + V  R K+ I   G ++ + 
Sbjct: 400 PQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE 447

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 10/221 (4%)
Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP+ H + L+     G L  G  ++L      +     IE+ +VT   +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++ DLSSL+++  G A    E      K V   T+ Q +G+ E     T  +
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGMAEGLVNYTRLD 343
Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKLT 186
                        ++P  E+ +   D  + + P + G +  RGP  +R           +
Sbjct: 344 DPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAAS 402
Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
             + G+  TGD+     DG + V  R K+ I   G +V + 
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 87/222 (39%), Gaps = 12/222 (5%)
Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP  H + L+     G L  G  ++L      +     IE+ +VT   +VPPL  
Sbjct: 225 VYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAX 284
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++ DLSSL+++  G A    E      K V   T+ Q +G  E  G+     
Sbjct: 285 VWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGXAE--GLVNYTR 341
Query: 134 SFAGSRNI-GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKL 185
                  I  + G      +   V  D  + + P + G +  RGP  +R           
Sbjct: 342 LDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAA 401
Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 227
           +  + G+  TGD+     DG + V  R K+ I   G +V + 
Sbjct: 402 SFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 34  GQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
           GQ   G  + +    +F+ +  L    K+ VT  +  PP I        +  ++ S+LK 
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKEDLSHYNFSTLKY 345
Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGV 151
                 PL  E+     +      +++G+G TET  + T+          GS G   PG 
Sbjct: 346 AVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTET--VVTIATFPWMEPKPGSIGKPTPGY 402
Query: 152 EALIVSVDTQKPLPPNQLGEIWLR-------------GPNMMRATKLTIDKKGWVHTGDL 198
           +  ++  D  +     + GEI +              G +  R  +   D  G+ HTGD+
Sbjct: 403 KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD--GYYHTGDM 459
Query: 199 GYFDGDGQLYVVDRIKELIKYKGFQV 224
            + D DG L+ V R  ++IK  G++V
Sbjct: 460 AWMDEDGYLWFVGRADDIIKTSGYKV 485

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 105/247 (42%), Gaps = 21/247 (8%)
Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRA 56
           ++TM        + VF     +  + G   +  G L  G   ++     A  +   +   
Sbjct: 292 LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--P 112
           I++H+VT  +V P  +  L + G   ++   L SL+ +GS   P+  E+ E  ++ +   
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKN 411
Query: 113 SATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL-G 170
              ++  Y  TE+ S + T           GSA     G++A+++  +T + L  +   G
Sbjct: 412 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEG 471
Query: 171 EIWLRG--PNMMRATKLTIDK---------KGWVHTGDLGYFDGDGQLYVVDRIKELIKY 219
            + ++   P+  R      D+          G+  TGD    D DG ++++ R+ +++  
Sbjct: 472 VLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV 531
Query: 220 KGFQVTS 226
            G ++++
Sbjct: 532 SGHRLST 538

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 18/101 (17%)
Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR---------- 181
           +++  GS  + S+G   P  E  I+  DT  P   +Q+GEIW++  ++ +          
Sbjct: 364 DDNSPGSYKLVSSGN--PIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETR 421
Query: 182 ---ATKLTIDKKG--WVHTGDLGYFDGDGQLYVVDRIKELI 217
              A K+  D++   ++ TGDLG+   + +LYV  RIK+LI
Sbjct: 422 HAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLI 461

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 21/216 (9%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P   V  GYG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-----MMRAT 183
               G+        +APG   E  IV +     + +   + GE+ +   +      +   
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 184 KLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           + T +K   GW  T D+  +  +G + ++ R+ ++I
Sbjct: 370 QATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI 405

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 109 KNVPSATVIQGYGLTE-TSGIATME--NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165
           +  P A +   YG TE T  + ++E  N           G   P +   I+  + Q PLP
Sbjct: 282 ERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQ-PLP 340
Query: 166 PNQLGEIWLRGPNMMR--------ATKLTIDKKG-WVH-TGDLGYFDGDGQLYVVDRIKE 215
             + GEI + GP++ R          K     +G W + TGD G+   DGQ++   R+  
Sbjct: 341 EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDF 399
Query: 216 LIKYKGFQV 224
            IK  G+++
Sbjct: 400 QIKLHGYRM 408

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-113
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-112
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-111
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-111
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-97
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-74
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-71
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	6e-67
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	8e-67
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	6e-66
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	7e-65
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-62
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-62
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	7e-62
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-57
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-34
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-32
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	3e-32
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	8e-31
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-28
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-25
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	4e-23
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-10
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	4e-10
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-09
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-09
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-09
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	4e-08
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	7e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	1e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	9e-05
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	1e-04
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	2e-04

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  333 bits (856), Expect = e-113
 Identities = 100/220 (45%), Positives = 139/220 (63%), Gaps = 10/220 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++   L  IEK++V+   VVPP++++
Sbjct: 225 VILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS 284

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +AK   + K DLSSL+++ SG APLGKEL +      P A + QGYG+TE   +  M  +
Sbjct: 285 IAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA 344

Query: 135 FA---GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
           FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+       AT 
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATS 404

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            TIDK+GW+HTGD+GY D D +L++VDR+KELIKYKGFQV
Sbjct: 405 RTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQV 444

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  329 bits (847), Expect = e-112
 Identities = 88/217 (40%), Positives = 134/217 (61%), Gaps = 10/217 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   
Sbjct: 238 AVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+    +  +
Sbjct: 297 LNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII--T 354

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+       ATK  I
Sbjct: 355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           D++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  328 bits (843), Expect = e-111
 Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 10/217 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L   
Sbjct: 236 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 294

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
            AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    +  +
Sbjct: 295 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI--T 352

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
             G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M        AT   I
Sbjct: 353 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALI 412

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           DK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 413 DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  339 bits (872), Expect = e-111
 Identities = 100/220 (45%), Positives = 138/220 (62%), Gaps = 10/220 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   +VPP++LA
Sbjct: 272 VILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLA 331

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M   
Sbjct: 332 IAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLG 391

Query: 135 FA---GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATK 184
           FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+       AT 
Sbjct: 392 FAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATA 451

Query: 185 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            TIDK GW+HTGD+G  D D +L++VDR+KELIKYKGFQV
Sbjct: 452 ETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 491

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  293 bits (753), Expect = 1e-97
 Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 21/229 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             +  +P+FH     ++    +  G+  ++M  F+ EM    IEK++ T  W VPP +  
Sbjct: 223 TIVGCMPMFHSAEFGLVNLM-VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNV 281

Query: 75  LAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQGYGLTETS 126
           L        K +D S LK+  +GA P+   L+E+  K      N P     Q +G+TE  
Sbjct: 282 LVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341

Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR----- 181
            + T  N         + G     +E  ++S++  + L   + GEI +RGPN+ +     
Sbjct: 342 PMVTT-NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKR 400

Query: 182 --ATKLTI----DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
               +         + +  TGD+G+ D +G L+  DR+KE+IKYKG+ +
Sbjct: 401 EKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  233 bits (597), Expect = 1e-74
 Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 12/217 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LP++H  GL V +   L     +I + KFD +  L  +   R T +  VP     
Sbjct: 198 VLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTR 255

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +   + K     ++L  SG+APL  +   E +       V++ YG+TET+   +  N 
Sbjct: 256 LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSA-KTGHAVLERYGMTETNMNTS--NP 312

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
           + G R  G+ G   PGV A +   +T K LP   +G I ++GPN+ +        TK   
Sbjct: 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEF 372

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
              G+  TGDLG  D  G ++++ R K+L+   GF V
Sbjct: 373 RDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNV 409

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  224 bits (574), Expect = 3e-71
 Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 13/217 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  LP+FHV  L  +      +G  +I M +FD       I + RV     VP ++  
Sbjct: 213 RLLLPLPMFHVAALTTVIFS-AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNF 271

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           + +     + D    +   +G AP+ + L++  A    +  V+QGY LTE+ G  T+  S
Sbjct: 272 MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA--KNIEVVQGYALTESCGGGTLLLS 329

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
               R  GSAG      +  +   D        + GE+ ++   +++       AT+   
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGV-IREHGE-GEVVIKSDILLKEYWNRPEATRDAF 387

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           D  GW  TGD+G  D +G LY+ DR+K++I   G  V
Sbjct: 388 D-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  213 bits (544), Expect = 6e-67
 Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 23/218 (10%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            +L VLP++H+ GL+V+    + +G  + ++ KF+ E  L  I+  R+THI +VP  +  
Sbjct: 206 NWLSVLPIYHISGLSVLLRA-VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNW 264

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC-AKNVPSATVIQGYGLTETSGIATMEN 133
           L + G     +  +L+ +  G A L   ++E     N+P   +   +G+TET        
Sbjct: 265 LMQQG---LHEPYNLQKILLGGAKLSATMIETALQYNLP---IYNSFGMTETCSQFLTAT 318

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLT 186
                    + G  +  V+  I + +          GE+ ++G N+M         T   
Sbjct: 319 PEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGTF 372

Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            +  G+ +TGD+   D +G + + DR K+LI   G  +
Sbjct: 373 EN--GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENI 408

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  213 bits (544), Expect = 8e-67
 Identities = 76/219 (34%), Positives = 104/219 (47%), Gaps = 20/219 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++     Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLML-TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +          L+SL+ V     P   E  E      P+AT    +G +ETSG++T    
Sbjct: 262 ILDQ--AAPAQLASLRAVTGLDTPETIERFEAT---CPNATFWATFGQSETSGLSTF--- 313

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
                   SAG         +V  + + PLPP ++GEI LRGP + +       AT+   
Sbjct: 314 APYRDRPKSAGRPLFWRTVAVVDAEDR-PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF 372

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQV 224
            + GW HTGD+G FD DG L+   R   KELIK  G  V
Sbjct: 373 -RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENV 410

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  210 bits (538), Expect = 6e-66
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 19/222 (8%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257

Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P    +  YG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYMR 316

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDT--QKPLPPNQLGEIWLRGPN-MMR-------A 182
                    G+  A     E  IV +     + +   + GE+ +   +           A
Sbjct: 317 -----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371

Query: 183 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           T   +   GW  T D+  +  +G + ++ R+ ++I   G  +
Sbjct: 372 TAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  207 bits (530), Expect = 7e-65
 Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 17/223 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LPLFHV GL +   G L++G  +  + +F  E   R +     T ++ VP +   
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHR 256

Query: 75  LAKHGLVKKF---DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +A+           L+  +L+ SG+A L     E  A       VI+ YG+TET    + 
Sbjct: 257 IAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA-ATGRRVIERYGMTETLMNTS- 314

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQ--KPLPPNQLGEIWLRGPNMMR-------A 182
                G    G+ G   PGVE  +V  D      L    +GEI +RGPN+         A
Sbjct: 315 -VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDA 373

Query: 183 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDR-IKELIKYKGFQV 224
           T     + G+  TGD+   D DG + +V R   +LIK  G+++
Sbjct: 374 TAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  202 bits (516), Expect = 2e-62
 Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 12/212 (5%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP+ H + L+     G L  G  ++L      +     IE+ +VT   +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++ DLSSL+++  G A    E            T+ Q +G+ E     T   
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTR-L 342

Query: 134 SFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKL 185
                  + + G  ++P  E+ +     +  + P + G +  RGP  +R           
Sbjct: 343 DDPEEIIVNTQGKPMSPYDESRVWDDHDR-DVKPGETGHLLTRGPYTIRGYYKAEEHNAA 401

Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
           +  + G+  TGD+     DG + V  R K+ I
Sbjct: 402 SFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI 433

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  204 bits (520), Expect = 2e-62
 Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 14/214 (6%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
            +LC +P  H + ++   + G    G  ++L A     +    IEKH+V    +VPP + 
Sbjct: 227 RYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVS 286

Query: 74  ALAKHGL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
              +  +    +  L+SLKL+  G A L   L       +    + Q +G+ E     T 
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG-CQLQQVFGMAEGLVNYTR 345

Query: 132 ENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------AT 183
               +  + I + G  + P  E  +   +   PLP  ++G +  RGP   R         
Sbjct: 346 -LDDSAEKIIHTQGYPMCPDDEVWVADAEGN-PLPQGEVGRLMTRGPYTFRGYYKSPQHN 403

Query: 184 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
               D  G+  +GDL   D +G + V  R K+ I
Sbjct: 404 ASAFDANGFYCSGDLISIDPEGYITVQGREKDQI 437

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  201 bits (513), Expect = 7e-62
 Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 12/212 (5%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
             LC LP  H F L+     G L  G C+++    +       I++H+V    +VP  ++
Sbjct: 234 RLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI 293

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
              +     K  + SLKL+  G A   + L  +    V +  + Q +G+ E     T   
Sbjct: 294 MWLEKAAQYKDQIQSLKLLQVGGASFPESLARQ-VPEVLNCKLQQVFGMAEGLVNYT-RL 351

Query: 134 SFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKL 185
             +  +   + G  ++   E  IV    +  +P  ++G +  RGP               
Sbjct: 352 DDSDEQIFTTQGRPISSDDEIKIVDEQYR-EVPEGEIGMLATRGPYTFCGYYQSPEHNSQ 410

Query: 186 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 217
             D+  + ++GDL     DG L VV RIK+ I
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI 442

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  189 bits (483), Expect = 1e-57
 Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 13/218 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V      LF  +GL       L  G+  ILMA +   +     + +HR T  + VP L  
Sbjct: 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYA 286

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
            +     +      ++++  S    L +E+ E          ++ G G TE   I    +
Sbjct: 287 NMLVSPNLPARADVAIRICTSAGEALPREIGERF-TAHFGCEILDGIGSTEMLHIFL--S 343

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLT 186
           + AG+   G+ G   PG E  +   +    +P  ++G+++++GP+           ++ T
Sbjct: 344 NRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRAT 402

Query: 187 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                W+ +GD      +G      R  +++K  G  V
Sbjct: 403 F-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYV 439

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  127 bits (322), Expect = 2e-34
 Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 31/227 (13%)

Query: 15  VFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           V L V+P+FHV       A    G       ++   + D    +   +   VT    VP 
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVG----AKQVLPGPRLDPASLVELFDGEGVTFTAGVPT 276

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSGIA 129
           + LALA +       L +L+ +  G +   + L+    +  V    V QGYGLTETS + 
Sbjct: 277 VWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVE---VRQGYGLTETSPVV 333

Query: 130 TMENSFAGSRNI---------GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPN 178
                 +   ++            G   P V   +   +  +P+P +   LGE+ L+GP 
Sbjct: 334 VQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPW 392

Query: 179 MMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
           +         AT+  +   G+  TGD+  +D +G + + DR+K+LIK
Sbjct: 393 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK 439

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  122 bits (307), Expect = 3e-32
 Identities = 56/249 (22%), Positives = 91/249 (36%), Gaps = 53/249 (21%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEM----FLRAIEKHRVTHIWVVPP----L 71
           LP  H  GL       +  G   I+M+ F        +L+ I K++ T     P      
Sbjct: 215 LPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS-PNFAYDY 273

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-----NVPSATVIQGYGLTETS 126
            +   +    +  DLSS     +GA P+ +E ME   +               YGL E +
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEAT 333

Query: 127 GIATMENSFAGSRNI-----------------GSAGALA------PGVEALIVSVDTQKP 163
            + T     +  + +                  S G+        P  E  I+  DT  P
Sbjct: 334 LLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIP 393

Query: 164 LPPNQLGEIWLRGPNMMR-------ATKLTI--------DKKGWVHTGDLGYFDGDGQLY 208
              +Q+GEIW++  ++ +        T+               ++ TGDLG+   + +LY
Sbjct: 394 CDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY 452

Query: 209 VVDRIKELI 217
           V  RIK+LI
Sbjct: 453 VTGRIKDLI 461

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  117 bits (294), Expect = 8e-31
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 55/262 (20%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL----EMFLRAIEK 59
            D +     +   +  LP +H  GL +  C  +  G   +L +          ++  +  
Sbjct: 221 ADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMAS 280

Query: 60  HRVTHIWVVPP----LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-----N 110
                    P     L         +   DL ++  + SG+  +    ++  A      N
Sbjct: 281 DFHAFSAA-PNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFN 339

Query: 111 VPSATVIQGYGLTETSGIATMENSFAGSR---------NIGSAGALAPGVEALIVSV--- 158
           +    +   Y L E +                      + G A   A G    ++S    
Sbjct: 340 LQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP 399

Query: 159 ----------DTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI-----------DKK 190
                     DT    P   +GEIW+ G N+          ++ T             + 
Sbjct: 400 RSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEG 459

Query: 191 GWVHTGDLGYFDGDGQLYVVDR 212
            W+ TGD G+   DG+++++ R
Sbjct: 460 PWLRTGDSGFVT-DGKMFIIGR 480

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  110 bits (278), Expect = 3e-28
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 22/219 (10%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           +   +     +  +          G+C  +  + KFD  + L+ +  + +    +  P++
Sbjct: 249 IMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-SMMGAPIV 307

Query: 73  L-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
              L +  L   +    L+   +    L  E +E          + + YG TET      
Sbjct: 308 YRMLLQQDL-SSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLT--C 363

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI-----WLRGPNMMR----- 181
             S       G  G  A   +  I+       LPP   G+I      +R   +       
Sbjct: 364 MVSKTMKIKPGYMGTAASCYDVQIIDDKGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDN 422

Query: 182 --ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
              T   I +  +   GD G  D DG    + R  ++I 
Sbjct: 423 PDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIIN 460

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  101 bits (253), Expect = 6e-25
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 24/201 (11%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
           GQ   G  + +    +F+ +  L    K+ VT  +  PP I   L K  L   ++ S+LK
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKEDL-SHYNFSTLK 344

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRN-IGSAGALAP 149
                  PL  E+     +      +++G+G TET  +     +F       GS G   P
Sbjct: 345 YAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTET-VV--TIATFPWMEPKPGSIGKPTP 400

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRG----PNMMR--------ATKLTIDKKGWVHTGD 197
           G +  ++     +     + GEI +      P  +          T+ T    G+ HTGD
Sbjct: 401 GYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGD 458

Query: 198 LGYFDGDGQLYVVDRIKELIK 218
           + + D DG L+ V R  ++IK
Sbjct: 459 MAWMDEDGYLWFVGRADDIIK 479

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 94.8 bits (235), Expect = 4e-23
 Identities = 24/183 (13%), Positives = 50/183 (27%), Gaps = 24/183 (13%)

Query: 15  VFLCVLPLF-HVFGLAVITCGQLQKGSCIIL---------------------MAKFDLEM 52
             L  +P   H+ G           G    +                          ++ 
Sbjct: 137 NTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQ 196

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV- 111
               +    +  +   PP++  L K   V      SL  +  G   L  + ++  A  + 
Sbjct: 197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEIL 256

Query: 112 PSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 171
           P       YG T   G++                + +P +   +V   T + +   + G 
Sbjct: 257 PDCEFSASYGSTSALGVS-RSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGN 315

Query: 172 IWL 174
           + +
Sbjct: 316 VIV 318

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 29/206 (14%)

Query: 33  CGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
               + G C +   +   L+   R   +  VTH  +VP L+            D   L  
Sbjct: 243 FLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----DAPHLVY 298

Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME--NSFAGSRNIGSAGALAP 149
           +G G   +     +  + +     ++  YG TE +   +       + +R IG       
Sbjct: 299 LGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHP---LG 354

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTID------KKGWVHTG 196
              A +++  + + +     GE+ + G  +         A            +     TG
Sbjct: 355 DSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYR-----TG 409

Query: 197 DLGYFDGDGQLYVVDRIKELIKYKGF 222
           D+   D D  +  + R  E +K +G 
Sbjct: 410 DIVRMDADSSILFLGRKDEQVKVRGQ 435

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 38/221 (17%), Positives = 68/221 (30%), Gaps = 54/221 (24%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           +   + +I+  +    D E     I +  V  ++    L   L   G      +  L+ +
Sbjct: 669 MLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED---WMKGLRCI 725

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM-----ENSFAGSRNIGSAGAL 147
             G        + +  + +    +I  YG TE +  AT            S  IG     
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP--- 782

Query: 148 APGVEALIVSVDTQKPLPPNQLGEIWL------RG-------------PN-------MMR 181
                  I++  +Q   P   +GE+ +      +G              N       + R
Sbjct: 783 ISNASVYILNEQSQ-LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYR 841

Query: 182 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 222
                        TGDL  +  DG +    RI + +K +G 
Sbjct: 842 -------------TGDLARWLPDGTIEYAGRIDDQVKIRGH 869

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K      +    ++E+  +      P             +  L ++K  
Sbjct: 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTF 266

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126
                 L  E+  +  +  P AT++  YG TE +
Sbjct: 267 LFCGEVLPNEVARKLIERFPKATIMNTYGPTEAT 300

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 41/208 (19%), Positives = 65/208 (31%), Gaps = 27/208 (12%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K    D +     I +  V      P             +  + +L   
Sbjct: 210 LALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHF 269

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGA 146
                 L      +  +  PSA +I  YG TE +   +                IG    
Sbjct: 270 YFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP-- 327

Query: 147 LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA----TKLTIDKKGWV--------H 194
             P     I+  D +  L   + GEI + GP + +      + T +   +         H
Sbjct: 328 -KPDSPTYIIDEDGK-ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEA--FFTFKGQPAYH 383

Query: 195 TGDLGYFDGDGQLYVVDRIKELIKYKGF 222
           TGD+G    D  L    R+   IKY G+
Sbjct: 384 TGDIGSLTEDNILLYGGRLDFQIKYAGY 411

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 54.8 bits (133), Expect = 4e-09
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 3/94 (3%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           LQ G  +  + K      ++    ++K  +      P  +          +  L      
Sbjct: 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTF 265

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126
                 L   + +   +  P A +   YG TE +
Sbjct: 266 MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT 299

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 55/185 (29%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL------------GKE 102
           I++H+VT  +V P  +  L + G   ++   L SL+ +GS   P+            GK 
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGK- 410

Query: 103 LMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNI---GSAGALAPGVEALIVSVD 159
              E         ++  Y  TE+     +    AG       GSA     G++A+++  +
Sbjct: 411 --NEIP-------IVDTYWQTESGSH--LVTPLAGGVTPMKPGSASFPFFGIDAVVLDPN 459

Query: 160 TQKPLPPNQLGEI------WLRGPNMMRATKLTI-------------DKKGWVHTGDLGY 200
           T + L  +    +      W   P+  R    TI                G+  TGD   
Sbjct: 460 TGEELNTSHAEGVLAVKAAW---PSFAR----TIWKNHDRYLDTYLNPYPGYYFTGDGAA 512

Query: 201 FDGDG 205
            D DG
Sbjct: 513 KDKDG 517

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 48/188 (25%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL------------GKE 102
           ++KH+V  ++  P  I AL   G   ++  D SSL+++GS   P+            GK 
Sbjct: 346 VDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGK- 404

Query: 103 LMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDT 160
             E+C        V+  +  TET G   M     G+  +  GSA     GV+  +V  + 
Sbjct: 405 --EKCP-------VVDTWWQTETGGF--MITPLPGAIELKAGSATRPFFGVQPALVD-NE 452

Query: 161 QKPLPPNQLGEIWLRG--PNMMRATKLTI-------------DKKGWVHTGDLGYFDGDG 205
             P      G + +    P   R    T+               K    +GD    D DG
Sbjct: 453 GHPQEGATEGNLVITDSWPGQAR----TLFGDHERFEQTYFSTFKNMYFSGDGARRDEDG 508

Query: 206 QLYVVDRI 213
             ++  R+
Sbjct: 509 YYWITGRV 516

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 3/82 (3%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
           D  +  + I +      W+   L   L          L  L+ + +G   L    +    
Sbjct: 241 DPGVLRQLIGERGADSAWLTASLFNTLVDLDPD---CLGGLRQLLTGGDILSVPHVRRAL 297

Query: 109 KNVPSATVIQGYGLTETSGIAT 130
              P   ++ GYG TE +    
Sbjct: 298 LRHPRLHLVNGYGPTENTTFTC 319

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G+ + ++ K    D   F + I +  +T I + P  ++ L          + S++ +
Sbjct: 245 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTL 298

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
            +  +     L+ +  + V     I  YG TET+  AT 
Sbjct: 299 ITAGSATSPSLVNKWKEKVT---YINAYGPTETTICATT 334

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 35/232 (15%), Positives = 60/232 (25%), Gaps = 70/232 (30%)

Query: 13  DYVFLCVLPLFHVFGLAVITCG-------QLQKGSCIILMAKFDLEMFLRA--------- 56
            Y   C +  F +F L +  C         LQK     L+ + D     R+         
Sbjct: 173 SYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQK-----LLYQIDPNWTSRSDHSSNIKLR 226

Query: 57  IE--KHRVTHIWVVPPLILAL--------AKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           I   +  +  +    P    L        AK      F+LS   L+ +    +   L   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 107 CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP 166
              ++            E   +           +      L    E L  +     P   
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSL------LLKYLDC-RPQDLPR--EVLTTN-----PRRL 330

Query: 167 NQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 218
           + + E        +R    T D   W H                D++  +I+
Sbjct: 331 SIIAE-------SIRDGLATWD--NWKH-------------VNCDKLTTIIE 360

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 26/52 (50%)

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           +KK   +SLKL    +AP               A  I+          ATME
Sbjct: 22  LKKLQ-ASLKLYADDSAP---------------ALAIK----------ATME 47

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 14/140 (10%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA----KHGLVKKFDLSSLKLVGS 94
           G  +I       E  ++ I+  R   I V P  +L++A    + GL      SSL++   
Sbjct: 160 GLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL--DPVQSSLRIGIF 217

Query: 95  GAAPLGKELMEECAKNVPSATVIQGYGLTET--SGIATMENSFAGSRNIGSAGALAPGVE 152
           GA P   ++     + +     +  YGL+E    G+A+          I          E
Sbjct: 218 GAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECVETKDGPTIWEDHFY---PE 273

Query: 153 ALIVSVDTQKPLPPNQLGEI 172
             I+  +T + LP  +LGE+
Sbjct: 274 --IIDPETGEVLPDGELGEL 291

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 34/140 (24%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA----KHGLVKKFDLSSLKLVGS 94
           G  ++ M+    E  ++ I       I V P  +L L     + G+      SSLK+   
Sbjct: 162 GCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM--DPAESSLKIGIF 219

Query: 95  GAAPLGKELMEECAKNVPSATVIQGYGLTETS--GIATMENSFAGSRNIGSAGALAPGVE 152
           GA P  + L  E    V     +  YGL+E    G+A           I          E
Sbjct: 220 GAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVETKDGPVIWEDHFY---PE 275

Query: 153 ALIVSVDTQKPLPPNQLGEI 172
             I+   T + LP    GE+
Sbjct: 276 --IIDPVTGEVLPDGSQGEL 293

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 35/138 (25%)

Query: 51  EMFLRAIEKHRVTHIWVVPPLILALA----KHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           +  ++ I   + T +  +P   + LA    + G+      ++LK +  GA P   E   +
Sbjct: 168 KRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI--DPRETTLKTLVIGAEPHTDEQRRK 225

Query: 107 CAKNVPSATVIQGYGLTETSGIAT------------MENSFAGSRNIGSAGALAPGVEAL 154
             + + +      +G+TE +G                E+ +               VE  
Sbjct: 226 -IERMLNVKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYL--------------VE-- 268

Query: 155 IVSVDTQKPLPPNQLGEI 172
           I+  +T +P+P  ++GE+
Sbjct: 269 IIDPETGEPVPEGEIGEL 286

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.52
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.46
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.33
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	82.03
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	81.52
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	80.75
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	80.16

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=8.4e-43  Score=293.97  Aligned_cols=221  Identities=44%  Similarity=0.720  Sum_probs=199.9

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~   86 (228)
                      .++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........+
T Consensus       217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l  296 (536)
T 3ni2_A          217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDL  296 (536)
T ss_dssp             SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCC
T ss_pred             cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCC
Confidence            56788999999999999999997778899999999999999999999999999999999999999999999877777788


Q ss_pred             CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccC---CCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---FAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~---~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      +++|.+++||+++++++.+++++.||++++++.||+||++.+++.+..   .......+++|+|+++++++++|++++++
T Consensus       297 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~  376 (536)
T 3ni2_A          297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGAS  376 (536)
T ss_dssp             TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCB
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcC
Confidence            999999999999999999999999999999999999999987655421   12234567899999999999999888999


Q ss_pred             CCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+|+|+.++..       +...++.+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus       377 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~  447 (536)
T 3ni2_A          377 LPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPA  447 (536)
T ss_dssp             CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHH
T ss_pred             CCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHH
Confidence            9999999999999999873       344566789999999999999999999999999999999999984

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.1e-41  Score=287.75  Aligned_cols=217  Identities=38%  Similarity=0.672  Sum_probs=195.0

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~   87 (228)
                      ++++++|++++.+|++|..++...++.++ .|+++++.+.+++..+++.++++++|+++++|++++.+.+........++
T Consensus       231 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~  309 (548)
T 2d1s_A          231 NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLS  309 (548)
T ss_dssp             CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCT
T ss_pred             cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccccc
Confidence            67889999999999999999987667777 99999999989999999999999999999999999999987665666789


Q ss_pred             CceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCC
Q 027096           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (228)
Q Consensus        88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g  167 (228)
                      ++|.+++||+++++++.+++++.|++.++++.||+||++.++......  ....+++|+|+++++++++|++++++++.|
T Consensus       310 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g  387 (548)
T 2d1s_A          310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGPN  387 (548)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCTT
T ss_pred             ceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCCCC
Confidence            999999999999999999999999889999999999999877654322  245678999999999999998889999999


Q ss_pred             CceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          168 QLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       168 ~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|||+|+|+.++..       +...++.+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus       388 ~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~  454 (548)
T 2d1s_A          388 RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPA  454 (548)
T ss_dssp             CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHH
T ss_pred             CCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHH
Confidence            999999999998873       334566789999999999999999999999999999999999984

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=7e-42  Score=289.17  Aligned_cols=217  Identities=41%  Similarity=0.674  Sum_probs=180.5

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCCC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~   87 (228)
                      +++.++|++++.+|++|..++.. ++.+++.|+++++.+.+++..+++.++++++|+++++|+++..+++........++
T Consensus       229 ~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~  307 (550)
T 3rix_A          229 NQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS  307 (550)
T ss_dssp             CCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCT
T ss_pred             ccCCCCcEEEEechHHHHHHHHH-HHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcc
Confidence            57889999999999999999976 77889999999999999999999999999999999999999999988776777889


Q ss_pred             CceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCC
Q 027096           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (228)
Q Consensus        88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g  167 (228)
                      ++|.+++||+++++++.+++++.++...+++.||+||++.++......  ....+++|+|+++++++|+|++++++++.|
T Consensus       308 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g  385 (550)
T 3rix_A          308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVN  385 (550)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTT
T ss_pred             cccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCC
Confidence            999999999999999999999999656699999999999877665443  345678999999999999998889999999


Q ss_pred             CceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          168 QLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       168 ~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|||+|+|+.++..       +...++.+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus       386 ~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~  452 (550)
T 3rix_A          386 QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPA  452 (550)
T ss_dssp             CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----------------
T ss_pred             CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHH
Confidence            999999999999873       344566789999999999999999999999999999999999985

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=4.1e-41  Score=281.61  Aligned_cols=218  Identities=30%  Similarity=0.450  Sum_probs=194.7

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|.+++...++.+++.|+++++.+.+++..+++.++  ++|+++++|+++..+++.......
T Consensus       188 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~  265 (503)
T 4fuq_A          188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKE  265 (503)
T ss_dssp             HHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTT
T ss_pred             HHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCcccc
Confidence            456789999999999999999998766778899999999999999999999998  899999999999999998777777


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      .++++|.+++||+++++++.+++.+.+ +.+++|.||+||++..+....  ......+++|+|+++++++++|+++++++
T Consensus       266 ~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~  342 (503)
T 4fuq_A          266 TTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKEL  342 (503)
T ss_dssp             TTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBC
T ss_pred             chhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCC
Confidence            788999999999999999999999988 689999999999987654322  22345678999999999999998899999


Q ss_pred             CCCCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|+.|||+|+|+.++.       .+...|..+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus       343 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~  412 (503)
T 4fuq_A          343 PRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPK  412 (503)
T ss_dssp             CTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHH
T ss_pred             cCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHH
Confidence            99999999999999987       3455666789999999999999999999999999999999999984

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=3.5e-41  Score=284.23  Aligned_cols=220  Identities=24%  Similarity=0.325  Sum_probs=189.5

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      ...++++++|++++.+|++|.+++.. .++.+|+.|+++++.+.+++..+++.++++++|+++++|+++..+++......
T Consensus       215 ~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  294 (539)
T 1mdb_A          215 VEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR  294 (539)
T ss_dssp             HHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC
T ss_pred             HHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC
Confidence            34578899999999999999999874 57899999999999999999999999999999999999999999987655455


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCC-ceEEEEeCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG-VEALIVSVDTQK  162 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~-~~~~i~d~~~~~  162 (228)
                      ..+++||.+++||+++++++.+++++.+ +.++++.||+||++..+. ...........++|+|+++ .+++++| ++++
T Consensus       295 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~  371 (539)
T 1mdb_A          295 DDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYT-RLDDPEEIIVNTQGKPMSPYDESRVWD-DHDR  371 (539)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEEC-CTTSCHHHHHHCCCEESSTTCEEEEEC-TTSC
T ss_pred             CCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCccccc-CCCCcHHhcCCCCCcccCCCceEEEEC-CCCC
Confidence            6789999999999999999999999988 799999999999653322 2111111234578999976 5899999 8899


Q ss_pred             CCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          163 PLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       163 ~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.|+.|||+|+|+.++..       +...|..+|||+|||+|++++||.+++.||.||+||++|++|+|.
T Consensus       372 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~  443 (539)
T 1mdb_A          372 DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE  443 (539)
T ss_dssp             BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHH
T ss_pred             CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHH
Confidence            99999999999999999873       344566789999999999999999999999999999999999984

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=4e-40  Score=294.54  Aligned_cols=221  Identities=44%  Similarity=0.740  Sum_probs=188.2

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~   86 (228)
                      .++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+........+
T Consensus       264 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l  343 (979)
T 3tsy_A          264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDL  343 (979)
T ss_dssp             SSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCC
T ss_pred             cccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCc
Confidence            56788999999999999999997778899999999999999999999999999999999999999999998877677778


Q ss_pred             CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccC---CCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---FAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~---~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      +++|.+++||+++++++.+++.+.||++++++.||+||++.+++....   .......+++|+|+++++++|+|++++++
T Consensus       344 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~  423 (979)
T 3tsy_A          344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDS  423 (979)
T ss_dssp             TTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCB
T ss_pred             cceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCC
Confidence            999999999999999999999999999999999999999987655421   12233557899999999999999888999


Q ss_pred             CCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+|+|+.++..       +...++.++||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus       424 ~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~  494 (979)
T 3tsy_A          424 LSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPA  494 (979)
T ss_dssp             CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------
T ss_pred             CCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHH
Confidence            9999999999999999873       345566789999999999999999999999999999999999985

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=5.3e-40  Score=282.45  Aligned_cols=221  Identities=22%  Similarity=0.299  Sum_probs=189.0

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC-
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-   80 (228)
                      ..++++++|++++.+|++|+.++...++.+|++|+++++.++    +++..+++.++++++|+++++|++++.+.+... 
T Consensus       291 ~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  370 (652)
T 1pg4_A          291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK  370 (652)
T ss_dssp             HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred             HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc
Confidence            457899999999999999999986558899999999999864    589999999999999999999999999987653 


Q ss_pred             -CCCCCCCCceEEEEcccCCCHHHHHHHHHhCC--CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEe
Q 027096           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  157 (228)
Q Consensus        81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d  157 (228)
                       ....++++||.++++||++++++.+++.+.++  ++++++.||+||++.++............+++|+|+++++++|+|
T Consensus       371 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d  450 (652)
T 1pg4_A          371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD  450 (652)
T ss_dssp             GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC
T ss_pred             ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC
Confidence             23456889999999999999999999999884  288999999999997665543222234567899999999999999


Q ss_pred             CCCCCCCCCCCceEEEEec--Ccccccc-------cccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096          158 VDTQKPLPPNQLGEIWLRG--PNMMRAT-------KLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       158 ~~~~~~~~~g~~Gel~v~~--~~~~~~~-------~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                       +++++++.|+.|||+|++  |.++..+       ...+  ..+|||+|||+|++|+||.++++||+||+||++|++|+|
T Consensus       451 -~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~  529 (652)
T 1pg4_A          451 -NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGT  529 (652)
T ss_dssp             -TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEH
T ss_pred             -CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECH
Confidence             789999999999999999  5565522       1121  137899999999999999999999999999999999998


Q ss_pred             C
Q 027096          227 N  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       530 ~  530 (652)
T 1pg4_A          530 A  530 (652)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=5.1e-41  Score=283.50  Aligned_cols=220  Identities=24%  Similarity=0.343  Sum_probs=180.4

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      ...++++++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..+++......
T Consensus       224 ~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  303 (544)
T 3o83_A          224 AEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK  303 (544)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH
T ss_pred             HHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc
Confidence            45678999999999999999988864 47889999999999999999999999999999999999999999988766666


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccC-CCceEEEEeCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQK  162 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~~~~  162 (228)
                      ..++++|.+++||+++++++.+++.+.+ ++++++.||+||++..+...... ......++|+|+ ++++++++| ++++
T Consensus       304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~~~  380 (544)
T 3o83_A          304 DQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDS-DEQIFTTQGRPISSDDEIKIVD-EQYR  380 (544)
T ss_dssp             HHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TTSC
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCc-hhhccCCCceecCCCcEEEEEC-CCCC
Confidence            6788999999999999999999999988 79999999999987544332211 122345789996 899999999 8999


Q ss_pred             CCCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          163 PLPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       163 ~~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.|+.|||+|+|+.++..       +...|+.+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus       381 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~  452 (544)
T 3o83_A          381 EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASE  452 (544)
T ss_dssp             BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-------------
T ss_pred             CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHH
Confidence            99999999999999998873       445566789999999999999999999999999999999999985

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.2e-39  Score=276.94  Aligned_cols=216  Identities=23%  Similarity=0.305  Sum_probs=187.6

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEc--CCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      .++++++++++++.+|++|..+++..++.++..|+++++.  +.+++..+++.++++++|+++++|++++.+.+. ....
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~  337 (580)
T 3etc_A          259 YWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSH  337 (580)
T ss_dssp             TTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC--
T ss_pred             HhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-cccc
Confidence            4578899999999999999988887678899999999987  568999999999999999999999999999876 3445


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      ..+++||.++++||++++++.+++++.+ +.++++.||+||++.++...+..  ....+++|+|+++++++|+| +++++
T Consensus       338 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd-~~g~~  413 (580)
T 3etc_A          338 YNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMD-RDGRL  413 (580)
T ss_dssp             -CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEEC-TTSCB
T ss_pred             CCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCCCC--CCCCCccccCCCCCEEEEEC-CCCCC
Confidence            6788999999999999999999999988 78999999999998776654432  34567899999999999999 77999


Q ss_pred             CCCCCceEEEEec-----Ccccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRG-----PNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~-----~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+|++     +.++.       .+.+.+ .+|||+|||+|++|+||.++++||.||+||++|++|+|.
T Consensus       414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~  488 (580)
T 3etc_A          414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPF  488 (580)
T ss_dssp             CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHH
T ss_pred             CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHH
Confidence            9999999999997     45554       334445 479999999999999999999999999999999999984

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.5e-39  Score=272.66  Aligned_cols=220  Identities=19%  Similarity=0.252  Sum_probs=191.5

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ...++++++|++++.+|++|..++.. ++.+++.|+++++.+.   +++..+++.++++++|+++++|++++.++..+..
T Consensus       176 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  254 (511)
T 3e7w_A          176 CADFPVSGGKIFLNQAPFSFDLSVMD-LYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF  254 (511)
T ss_dssp             HHHSTTTTTCEEEECSCTTSTHHHHH-HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC
T ss_pred             HHhcCCCccceEEEeCCccHHHHHHH-HHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc
Confidence            35678899999999999999999876 8899999999999875   6899999999999999999999999999988776


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~  158 (228)
                      ....++++|.++++|+++++++.+++.+.|+++++++.||+||++.+++......   ......++|+|+++++++++| 
T Consensus       255 ~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-  333 (511)
T 3e7w_A          255 SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-  333 (511)
T ss_dssp             STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-
T ss_pred             ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-
Confidence            7777899999999999999999999999999999999999999988765432211   123446799999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCcccccc-------cccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          159 DTQKPLPPNQLGEIWLRGPNMMRAT-------KLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++++.|+.|||+|+|+.++..+       ...+   +.++||+|||+|++ +||.+++.||.||+||++|++|+|.
T Consensus       334 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~  411 (511)
T 3e7w_A          334 EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELE  411 (511)
T ss_dssp             TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHH
T ss_pred             CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHH
Confidence            7899999999999999999998733       2233   12237999999999 6899999999999999999999984

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=4.9e-40  Score=275.75  Aligned_cols=220  Identities=19%  Similarity=0.230  Sum_probs=193.6

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ...++++++|++++.+|++|..++.. ++.+++.|+++++.+.   +++..+++.++++++|++.++|++++.++.....
T Consensus       177 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  255 (512)
T 3fce_A          177 VEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF  255 (512)
T ss_dssp             HHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC
T ss_pred             HHhcCCCCCCEEEEeCCccHhHHHHH-HHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccc
Confidence            45678999999999999999999876 8899999999999876   6899999999999999999999999999887776


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSV  158 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~  158 (228)
                      ....++++|.++++|+++++++.+++.+.|+++++++.||+||++.+++......   ......++|+|.++++++++| 
T Consensus       256 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-  334 (512)
T 3fce_A          256 SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-  334 (512)
T ss_dssp             STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-
T ss_pred             cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-
Confidence            7778899999999999999999999999999999999999999998766533221   122446799999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCcccccc-------cccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          159 DTQKPLPPNQLGEIWLRGPNMMRAT-------KLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       159 ~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++++.|+.|||+|+|+.++..+       ...+   +.++||+|||+|++ +||.+++.||.||+||++|++|+|.
T Consensus       335 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~  412 (512)
T 3fce_A          335 EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELE  412 (512)
T ss_dssp             SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHH
T ss_pred             CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHH
Confidence            8899999999999999999998733       2222   35679999999999 7999999999999999999999984

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.1e-39  Score=273.44  Aligned_cols=218  Identities=28%  Similarity=0.386  Sum_probs=187.4

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ..++++++|++++.+|++|.+++.. ++.+++.|+++++.+. +++..+++.++++++|+++++|+++..+++.......
T Consensus       212 ~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  290 (541)
T 1v25_A          212 DGTALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH  290 (541)
T ss_dssp             TTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC
T ss_pred             ccccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC
Confidence            4567889999999999999999865 7788999999999864 7999999999999999999999999999876544455


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCC---------CCCCCCccccCCCceEEE
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEALI  155 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~~~~~i  155 (228)
                      .++++|.+++||+++++++.+++ +.+ ++++++.||+||++.+++.......         .....++|+|+++++++|
T Consensus       291 ~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i  368 (541)
T 1v25_A          291 RLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRV  368 (541)
T ss_dssp             CCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEE
T ss_pred             cchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEE
Confidence            67899999999999999999999 666 7999999999999987765432210         012468999999999999


Q ss_pred             EeCCCCCCCCC--CCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096          156 VSVDTQKPLPP--NQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       156 ~d~~~~~~~~~--g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                      +| +++++++.  ++.|||+|+|+.++.       .+...+..+|||+|||+|++|+||.+++.||+||+||++|++|+|
T Consensus       369 ~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p  447 (541)
T 1v25_A          369 AD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS  447 (541)
T ss_dssp             EC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEH
T ss_pred             EC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECH
Confidence            99 77888884  368999999999986       344556568999999999999999999999999999999999998


Q ss_pred             C
Q 027096          227 N  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       448 ~  448 (541)
T 1v25_A          448 V  448 (541)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=8.2e-40  Score=276.47  Aligned_cols=221  Identities=29%  Similarity=0.463  Sum_probs=181.3

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC-
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-   83 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~-   83 (228)
                      ...++++++|++++.+|++|..++.. ++.++..|+++++.+.+++..+++.++++++|+++++|++++.+++...... 
T Consensus       213 ~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  291 (549)
T 3g7s_A          213 AVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK  291 (549)
T ss_dssp             HHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC
T ss_pred             HHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc
Confidence            35678899999999999999999987 8889999999999999999999999999999999999999999987643333 


Q ss_pred             -CCCCCceEEEEcccCCCHHHHHHHHHh----CC--CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEE
Q 027096           84 -FDLSSLKLVGSGAAPLGKELMEECAKN----VP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV  156 (228)
Q Consensus        84 -~~~~~lr~~~~~G~~l~~~~~~~~~~~----~~--~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~  156 (228)
                       ..++++|.+++||+++++++.+++.+.    ++  ..++++.||+||++.+++...... .....++|+|+++++++++
T Consensus       292 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~  370 (549)
T 3g7s_A          292 TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVI  370 (549)
T ss_dssp             CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEE
T ss_pred             cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEE
Confidence             567899999999999999999999987    53  389999999999998876654332 2345789999999999999


Q ss_pred             eCCCCCCCCCCCceEEEEecCccccc-------ccccc--cCCC--eEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          157 SVDTQKPLPPNQLGEIWLRGPNMMRA-------TKLTI--DKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       157 d~~~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~--~~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      |++++++++.|+.|||+|+|+.++..       +...|  +.+|  ||+|||+|++++||.++++||.||+||++|++|+
T Consensus       371 d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~  450 (549)
T 3g7s_A          371 SLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIA  450 (549)
T ss_dssp             CSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------
T ss_pred             eCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEEC
Confidence            98899999999999999999999872       33333  2456  9999999999999999999999999999999999


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      |.
T Consensus       451 p~  452 (549)
T 3g7s_A          451 PF  452 (549)
T ss_dssp             CH
T ss_pred             HH
Confidence            84

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.1e-39  Score=273.80  Aligned_cols=217  Identities=27%  Similarity=0.403  Sum_probs=191.4

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|..++...++. ++.|+++++.+.+++..+++.++++++|++.++|++++.+.+.+.....
T Consensus       203 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~-~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  281 (517)
T 3r44_A          203 ASTIDVRYRDRLLLPLPMFHVAALTTVIFS-AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL  281 (517)
T ss_dssp             HHHSCCCTTCEEEECSCTTSHHHHHHHHHH-HHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHC
T ss_pred             HHhcCCCCCCEEEEeCchHHHHHHHHHHHH-HhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccC
Confidence            456789999999999999999999874444 4599999999999999999999999999999999999999887655566


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      .++++|.+++||+++++++.+++.+.  +.++++.||+||++..++...........+++|+|.++++++++| ++++++
T Consensus       282 ~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~  358 (517)
T 3r44_A          282 DAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIR  358 (517)
T ss_dssp             CCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEE
T ss_pred             CCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCC
Confidence            78899999999999999999999887  789999999999988776654443345667899999999999999 788888


Q ss_pred             CCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.| .|||+|+|+.++..       +...| .+|||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus       359 ~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~  426 (517)
T 3r44_A          359 EHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPA  426 (517)
T ss_dssp             SSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHH
T ss_pred             CCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHH
Confidence            888 89999999999873       34445 579999999999999999999999999999999999984

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=2.1e-39  Score=272.92  Aligned_cols=218  Identities=20%  Similarity=0.301  Sum_probs=185.2

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      ...++++++|++++.+|++|..++...++.++..|+++++. +.+++..+++.++++++|+++++|+++..+++......
T Consensus       217 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  296 (529)
T 2v7b_A          217 KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA  296 (529)
T ss_dssp             CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCC
T ss_pred             hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccc
Confidence            34578899999999999999999987677899999999987 56899999999999999999999999999987654333


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      ....++|.++++|+++++++.+++++.+ ++++++.||+||++.++......  ....+++|+|+++++++++| +++++
T Consensus       297 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~  372 (529)
T 2v7b_A          297 RADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHA  372 (529)
T ss_dssp             GGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCB
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCC
Confidence            2123899999999999999999999988 78999999999997766554322  23557899999999999999 88999


Q ss_pred             CCCCCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+|+|+.++..+       ...+ .++||+|||+++++++|.+++.||.||+||++|++|+|.
T Consensus       373 ~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~  442 (529)
T 2v7b_A          373 VPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPV  442 (529)
T ss_dssp             CCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHH
T ss_pred             CCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHH
Confidence            99999999999999988733       3334 378999999999999999999999999999999999984

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2e-39  Score=275.13  Aligned_cols=217  Identities=23%  Similarity=0.264  Sum_probs=172.9

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      ..++++++|++++.+|++|..+... ++.+++.|+++++.+  .+++..+++.++++++|++.++|++++.+.+...   
T Consensus       247 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---  322 (570)
T 4gr5_A          247 DYAGFGPDEVFLQCSPVSWDAFGLE-LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---  322 (570)
T ss_dssp             CSSCCSTTCEEEECSCTTSSTHHHH-HHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---
T ss_pred             hhcCCCCCCEEEEecCccHHHHHHH-HHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---
Confidence            4567889999999999999777665 788999999999986  4789999999999999999999999999987532   


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC--CCCCCCCccccCCCceEEEEeCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--GSRNIGSAGALAPGVEALIVSVDTQ  161 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~i~d~~~~  161 (228)
                      ..+++||.+++||+++++++.+++.+.+++.++++.||+||++.++.......  ......++|+|+++++++|+| +++
T Consensus       323 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~  401 (570)
T 4gr5_A          323 EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDL  401 (570)
T ss_dssp             GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTS
T ss_pred             hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCC
Confidence            34788999999999999999999999998999999999999988765433221  123345799999999999999 889


Q ss_pred             CCCCCCCceEEEEecCcccccc-------ccccc--------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096          162 KPLPPNQLGEIWLRGPNMMRAT-------KLTID--------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       162 ~~~~~g~~Gel~v~~~~~~~~~-------~~~~~--------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                      ++++.|+.|||+|+|+.++..+       .+.|.        .++||+|||+|++|+||.++++||+||+||++|+||+|
T Consensus       402 ~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p  481 (570)
T 4gr5_A          402 KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEP  481 (570)
T ss_dssp             CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------
T ss_pred             CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCH
Confidence            9999999999999999998732       33332        24799999999999999999999999999999999998


Q ss_pred             C
Q 027096          227 N  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       482 ~  482 (570)
T 4gr5_A          482 G  482 (570)
T ss_dssp             -
T ss_pred             H
Confidence            5

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=3.1e-39  Score=273.87  Aligned_cols=216  Identities=19%  Similarity=0.293  Sum_probs=189.0

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      ..++++++|++++.+|++|..++...++.++..|+++++.+  .+++..+++.++++++|+++++|++++.+.+.. ...
T Consensus       240 ~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~  318 (570)
T 3c5e_A          240 GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSS  318 (570)
T ss_dssp             TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTT
T ss_pred             hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccc
Confidence            45788999999999999999998866889999999999986  689999999999999999999999999998763 334


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      ..++++|.++++|+++++++.+++++.+ ++++++.||+||++.++......  ....+++|+|+++++++|+| +++++
T Consensus       319 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d-~~g~~  394 (570)
T 3c5e_A          319 YKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSKTM--KIKPGYMGTAASCYDVQIID-DKGNV  394 (570)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCCEEEEC-TTSCB
T ss_pred             cccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCccc--ccCCCcccccCCCceEEEEC-CCCCC
Confidence            5678999999999999999999999988 78999999999998765543322  23557899999999999999 78999


Q ss_pred             CCCCCceEEEEe-----cCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLR-----GPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~-----~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.|+.|||+|+     |+.++..       +...+ .++||+|||+|++|+||.+++.||.||+||++|++|+|.
T Consensus       395 ~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~  469 (570)
T 3c5e_A          395 LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPS  469 (570)
T ss_dssp             CCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHH
T ss_pred             CCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHH
Confidence            999999999999     7777763       33344 478999999999999999999999999999999999984

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=5.8e-39  Score=274.30  Aligned_cols=218  Identities=20%  Similarity=0.275  Sum_probs=187.0

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~   82 (228)
                      ...++++++|++++.+|++|..++.. ++.+|+.|+++++.+  .+++..+.+.++++++|+++++|++++.+.+..   
T Consensus       196 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---  271 (620)
T 4dg8_A          196 QSFLAFAPQMRFLVNSPLSFDAATLE-IWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---  271 (620)
T ss_dssp             CGGGTTCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---
T ss_pred             HHhhCCCCCCEEEEECccCHHHHHHH-HHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---
Confidence            34678899999999999999999887 899999999999964  579999999999999999999999999998742   


Q ss_pred             CCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCC--CCCCCCCCccccCCCceEEEEeCCC
Q 027096           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF--AGSRNIGSAGALAPGVEALIVSVDT  160 (228)
Q Consensus        83 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~--~~~~~~~~~g~p~~~~~~~i~d~~~  160 (228)
                      ...+++||.+++|||++++++.+++.+.+++++++|.||+||++.+++.....  .......++|+|+++++++|+| ++
T Consensus       272 ~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~  350 (620)
T 4dg8_A          272 PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EH  350 (620)
T ss_dssp             GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TT
T ss_pred             hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-cc
Confidence            34578899999999999999999999888899999999999999876543221  1233456899999999999999 56


Q ss_pred             CCC-CCCCCceEEEEecCccccc-------ccccccCC-------CeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          161 QKP-LPPNQLGEIWLRGPNMMRA-------TKLTIDKK-------GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       161 ~~~-~~~g~~Gel~v~~~~~~~~-------~~~~~~~~-------~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      +++ ++.|+.|||+|+|+.++..       +.+.|..+       +||+|||+|++++||.++++||.||+||++|+||+
T Consensus       351 ~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~  430 (620)
T 4dg8_A          351 GQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLD  430 (620)
T ss_dssp             SCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEE
T ss_pred             CCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcC
Confidence            655 8899999999999999873       23333221       79999999999999999999999999999999999


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      |.
T Consensus       431 ~~  432 (620)
T 4dg8_A          431 LP  432 (620)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=4.7e-39  Score=269.26  Aligned_cols=214  Identities=20%  Similarity=0.311  Sum_probs=185.0

Q ss_pred             ccccC--CCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCC--C
Q 027096            6 QETAG--ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--V   81 (228)
Q Consensus         6 ~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~   81 (228)
                      ..+++  .++|++++.+|++|..++...++.+++.|+++++.+.+++..+++.++++++|+++++|++++.+.+...  .
T Consensus       187 ~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  266 (504)
T 1t5h_X          187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG  266 (504)
T ss_dssp             HTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT
T ss_pred             HhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc
Confidence            34566  7899999999999999986558899999999999999999999999999999999999999999987642  2


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  161 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~  161 (228)
                      ....++++|.+++||+++++++.+++++.+ +.++++.||+||++ ++....    ....+++|.|.++++++++| +++
T Consensus       267 ~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~-~~~~~~----~~~~~~~g~p~~~~~~~i~~-~~~  339 (504)
T 1t5h_X          267 SSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAM-NSLYMR----QPKTGTEMAPGFFSEVRIVR-IGG  339 (504)
T ss_dssp             CCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTE-EEEEEE----SCSSSSEEBCCTTCCEEEEC-TTS
T ss_pred             ccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccc-cccccc----CCCCCccccCCCCCceeEEe-ccC
Confidence            445678999999999999999999999998 58899999999993 222222    23456899999999999999 555


Q ss_pred             ---CCCCCCCceEEEEe-cCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          162 ---KPLPPNQLGEIWLR-GPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       162 ---~~~~~g~~Gel~v~-~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                         ++++.|+.|||+|+ ++.++..       +.+.+ .+|||+|||+|++++||.+++.||.||+||++|++|+|.
T Consensus       340 ~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~  415 (504)
T 1t5h_X          340 GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS  415 (504)
T ss_dssp             CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHH
T ss_pred             CCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHH
Confidence               89999999999999 8888752       33444 578999999999999999999999999999999999984

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=6.6e-39  Score=269.39  Aligned_cols=218  Identities=19%  Similarity=0.214  Sum_probs=186.5

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      +++.+++++++.+|++|..++.. ++.++..|+++++.+.   .++..+++.+.++++|++.++|+++..+.........
T Consensus       183 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  261 (521)
T 3l8c_A          183 FDVPKQPQMLAQPPYSFDLSVMY-WAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQA  261 (521)
T ss_dssp             TCCCSSCEEECCSCTTSGGGHHH-HHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTT
T ss_pred             cCCCCCCeEEecCCccHHHHHHH-HHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccc
Confidence            77889999999999999998876 7889999999999875   3899999999999999999999999999887766667


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC---CCCCCCCccccCCCceEEEEeCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQ  161 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~~~~  161 (228)
                      .++++|.++++|+++++++.+++.+.++++++++.||+||++.+++......   ......++|+|+++++++|+| +++
T Consensus       262 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g  340 (521)
T 3l8c_A          262 KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDG  340 (521)
T ss_dssp             TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTS
T ss_pred             cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCc
Confidence            7899999999999999999999999999999999999999988765533211   112346799999999999999 889


Q ss_pred             CCCCCCCceEEEEecCcccccc-------cccc---cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          162 KPLPPNQLGEIWLRGPNMMRAT-------KLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       162 ~~~~~g~~Gel~v~~~~~~~~~-------~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++++.|+.|||+|+|+.++..+       .+.|   +.++||+|||+|++|++|.+++.||.||+||++|++|+|.
T Consensus       341 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~  416 (521)
T 3l8c_A          341 KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELE  416 (521)
T ss_dssp             CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHH
T ss_pred             CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHH
Confidence            9999999999999999998733       2222   4568999999999999999999999999999999999984

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=5.8e-39  Score=276.30  Aligned_cols=222  Identities=20%  Similarity=0.323  Sum_probs=188.5

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC-
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-   80 (228)
                      ..++++++|++++.+|++|+.++...++.+|+.|+++++.++    +++..+++.|+++++|+++++|++++.+.+... 
T Consensus       297 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~  376 (663)
T 1ry2_A          297 YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS  376 (663)
T ss_dssp             HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred             HhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc
Confidence            457899999999999999999986658899999999999864    589999999999999999999999999987654 


Q ss_pred             -CCCCCCCCceEEEEcccCCCHHHHHHHHHhCC--CCeEEecccccccCCceeeccC-CCCCCCCCCccccCCCceEEEE
Q 027096           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENS-FAGSRNIGSAGALAPGVEALIV  156 (228)
Q Consensus        81 -~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~g~~~~~~~~-~~~~~~~~~~g~p~~~~~~~i~  156 (228)
                       ....++++||.++++||++++++.+++.+.++  ++++++.||+||++..+..... .......+++|+|+++++++|+
T Consensus       377 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~  456 (663)
T 1ry2_A          377 YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL  456 (663)
T ss_dssp             SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEE
T ss_pred             ccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEE
Confidence             23457899999999999999999999999884  3899999999999876655432 1223456789999999999999


Q ss_pred             eCCCCCCCCC-CCceEEEEecC--ccccc-------ccccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          157 SVDTQKPLPP-NQLGEIWLRGP--NMMRA-------TKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       157 d~~~~~~~~~-g~~Gel~v~~~--~~~~~-------~~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                      |.+++++++. |+.|||+|+++  .++..       +...+  ..+|||+|||+|++++||.++++||+||+||++|++|
T Consensus       457 d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI  536 (663)
T 1ry2_A          457 DPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL  536 (663)
T ss_dssp             CSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCB
T ss_pred             cCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEc
Confidence            9548999988 99999999995  55542       11222  1378999999999999999999999999999999999


Q ss_pred             ecC
Q 027096          225 TSN  227 (228)
Q Consensus       225 ~p~  227 (228)
                      +|.
T Consensus       537 ~~~  539 (663)
T 1ry2_A          537 STA  539 (663)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            874

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=7.1e-39  Score=268.19  Aligned_cols=218  Identities=29%  Similarity=0.448  Sum_probs=184.4

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCC--
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK--   82 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~--   82 (228)
                      ...++++++|++++.+|++|..++...++.++..|+++++.+.+++..+++.+ ++++|+++++|+++..+++.....  
T Consensus       188 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~  266 (505)
T 3nyq_A          188 ADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE  266 (505)
T ss_dssp             HHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred             HHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence            45678899999999999999999876688999999999999999999999999 889999999999999998743221  


Q ss_pred             -CCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCC
Q 027096           83 -KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  161 (228)
Q Consensus        83 -~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~  161 (228)
                       ...++++|.+++||+++++++.+++.+.+ +.+++|.||+||++.++......  ....+++|+|+++++++++| +++
T Consensus       267 ~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d-~~g  342 (505)
T 3nyq_A          267 LAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVE-EDG  342 (505)
T ss_dssp             HHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC-----
T ss_pred             hhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCCCC--CCCCCCcccCCCCCEEEEEC-CCC
Confidence             23467789999999999999999999987 78999999999998766544322  34557899999999999999 778


Q ss_pred             CCCCC---CCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEeccc-CCceeecCeEeecC
Q 027096          162 KPLPP---NQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI-KELIKYKGFQVTSN  227 (228)
Q Consensus       162 ~~~~~---g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~-~d~i~~~G~~v~p~  227 (228)
                      ++++.   |+.|||+|+|+.++.       .+...|..++||+|||+|++++||.++++||+ ||+||++|++|+|.
T Consensus       343 ~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~  419 (505)
T 3nyq_A          343 TPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAG  419 (505)
T ss_dssp             -CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHH
T ss_pred             CCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHH
Confidence            88876   899999999999887       34456667899999999999999999999998 59999999999984

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.7e-38  Score=271.68  Aligned_cols=220  Identities=24%  Similarity=0.368  Sum_probs=189.0

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC--
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--   81 (228)
                      ...++++++|++++.+|++|.+++.. .++.+++.|+++++.+..++..+++.++++++|++.++|+++..+++....  
T Consensus       217 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  296 (617)
T 3rg2_A          217 VEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE  296 (617)
T ss_dssp             HHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC
T ss_pred             HHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc
Confidence            34678899999999999999888764 478899999999999889999999999999999999999999998775322  


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccC-CCceEEEEeCCC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDT  160 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~i~d~~~  160 (228)
                      ....++++|.+++|||++++++.+++.+.+ +.+++|.||+||++..+...... ......++|.|+ ++.++.++| ++
T Consensus       297 ~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~  373 (617)
T 3rg2_A          297 SRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDS-AEKIIHTQGYPMCPDDEVWVAD-AE  373 (617)
T ss_dssp             CTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TT
T ss_pred             ccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCc-ccccccCCCccCCCCceEEEEC-CC
Confidence            233688999999999999999999999988 79999999999987554432211 112234688997 788999999 88


Q ss_pred             CCCCCCCCceEEEEecCcccc-------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          161 QKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       161 ~~~~~~g~~Gel~v~~~~~~~-------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++.|+.|||+|+|+.++.       .+...|..++||+|||+|++++||.++++||.||+||++|++|+|.
T Consensus       374 ~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~  447 (617)
T 3rg2_A          374 GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE  447 (617)
T ss_dssp             SCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHH
T ss_pred             CCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHH
Confidence            999999999999999999887       3455677889999999999999999999999999999999999984

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=5.6e-38  Score=262.60  Aligned_cols=211  Identities=25%  Similarity=0.396  Sum_probs=180.9

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|.+++.. ++.+++.|+++++.+.+++..+++.++++++|+++++|++++.+++...... 
T Consensus       196 ~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-  273 (501)
T 3ipl_A          196 KESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP-  273 (501)
T ss_dssp             HHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC-
T ss_pred             HHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc-
Confidence            45678899999999999999999987 8899999999999999999999999999999999999999999988754333 


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                        .++|.+++||+++++++.+++.+.  +.++++.||+||++..+.............++|+|+++++++++|++     
T Consensus       274 --~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----  344 (501)
T 3ipl_A          274 --YNLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----  344 (501)
T ss_dssp             --TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----
T ss_pred             --CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----
Confidence              279999999999999999999884  78999999999998765544332222355789999999999999943     


Q ss_pred             CCCCceEEEEecCcccccccccc-----cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRATKLTI-----DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~~~~~-----~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                       .|+.|||+|+|+.++..+....     ..+|||+|||+|+++++|.+++.||.||+||++|++|+|.
T Consensus       345 -~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~  411 (501)
T 3ipl_A          345 -KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPY  411 (501)
T ss_dssp             -SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHH
T ss_pred             -CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHH
Confidence             4567999999999887332111     2578999999999999999999999999999999999984

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=8e-38  Score=264.87  Aligned_cols=212  Identities=18%  Similarity=0.208  Sum_probs=181.4

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ...++++++|++++.+|++|..++.. ++.+++.|+++++.+.   +++..+++.++++++|+++++|+++..+...   
T Consensus       215 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---  290 (563)
T 1amu_A          215 ENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE---  290 (563)
T ss_dssp             HHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---
T ss_pred             HHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---
Confidence            35678899999999999999999876 7889999999999875   6899999999999999999999988776432   


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC-CCCCCCCccccCCCceEEEEeCCC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDT  160 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~i~d~~~  160 (228)
                         .+.++|.+++||+++++++.+++++.   .++++.||+||++.++....... ......++|+|+++++++|+| ++
T Consensus       291 ---~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~  363 (563)
T 1amu_A          291 ---RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-EN  363 (563)
T ss_dssp             ---TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TT
T ss_pred             ---ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CC
Confidence               35789999999999999999998774   68999999999988765543222 123456899999999999999 88


Q ss_pred             CCCCCCCCceEEEEecCcccccc-------ccccc------CCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          161 QKPLPPNQLGEIWLRGPNMMRAT-------KLTID------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       161 ~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++.|+.|||+|+|+.++..+       ...|.      .++||+|||+|++|+||.++++||.||+||++|++|+|.
T Consensus       364 ~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~  443 (563)
T 1amu_A          364 LQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELE  443 (563)
T ss_dssp             SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHH
T ss_pred             cCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHH
Confidence            99999999999999999988733       22332      346999999999999999999999999999999999984

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1e-37  Score=261.55  Aligned_cols=212  Identities=35%  Similarity=0.520  Sum_probs=168.5

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ...++++++|++++.+|++|.+++... +.+++.|++.++...+++..+++.++++++|+++++|+++..+++..  ...
T Consensus       193 ~~~~~~~~~d~~l~~~p~~~~~g~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~  269 (509)
T 3ivr_A          193 VDAWRLTEADVNLGMLPLFHVTGLGLM-LTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APA  269 (509)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHHHHH-HHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGG
T ss_pred             HHhhCCCCCcEEEEeCCCcchhHHHHH-HHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--ccc
Confidence            456789999999999999999999874 44444455555555889999999999999999999999999998875  445


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      .++++|.++.+|++   ++.+++.+.++++++++.||+||++.+++......   ....+|+|+++++++++| ++++++
T Consensus       270 ~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~---~~~~~G~p~~~~~~~i~d-~~~~~~  342 (509)
T 3ivr_A          270 QLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD---RPKSAGRPLFWRTVAVVD-AEDRPL  342 (509)
T ss_dssp             GGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG---STTSCCEECTTCEEEEEC-TTSCBC
T ss_pred             chhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc---CCCcccccCCCcEEEEEC-CCCCCC
Confidence            57899999999987   88899999998999999999999998776554322   224599999999999999 779999


Q ss_pred             CCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEeccc--CCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~--~d~i~~~G~~v~p~  227 (228)
                      +.|+.|||+|+|+.++..       +...| .+|||+|||+|++++||.+++.||.  ||+||++|++|+|.
T Consensus       343 ~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~  413 (509)
T 3ivr_A          343 PPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPA  413 (509)
T ss_dssp             CTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------------
T ss_pred             CCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHH
Confidence            999999999999998873       33445 4789999999999999999999999  99999999999985

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=3e-38  Score=269.04  Aligned_cols=220  Identities=25%  Similarity=0.314  Sum_probs=184.0

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhcCceEEEechHHHHHHHhcC-
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKHG-   79 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~-   79 (228)
                      ...++++++|++++++|++|..|+...++.+++.|+++++.+.+    ++..+++.++++++|++.++|+++..+.+.. 
T Consensus       200 ~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  279 (590)
T 3kxw_A          200 FTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIR  279 (590)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCC
T ss_pred             HHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhh
Confidence            35678999999999999999999987678999999999998764    7899999999999999999999999887753 


Q ss_pred             --CCCCCCCCCceEEEEcccCCCHHHHHHHHHhCC-----CCeEEecccccccCCceeeccCC-----------------
Q 027096           80 --LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSF-----------------  135 (228)
Q Consensus        80 --~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~l~~~yG~tE~g~~~~~~~~~-----------------  135 (228)
                        ......++++|.+++||+++++++.+++.+.|+     +.++++.||+||++.+++.....                 
T Consensus       280 ~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (590)
T 3kxw_A          280 EEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHR  359 (590)
T ss_dssp             GGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSB
T ss_pred             hhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCc
Confidence              234467899999999999999999999999873     45799999999999877653211                 


Q ss_pred             --------CCCCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCcccccc-------cccccC------CC--e
Q 027096          136 --------AGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRAT-------KLTIDK------KG--W  192 (228)
Q Consensus       136 --------~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~-------~~~~~~------~~--~  192 (228)
                              .......++|+|+++  ++|+|++++++++.|+.|||+|+|+.++..+       ...|..      +|  |
T Consensus       360 ~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~  437 (590)
T 3kxw_A          360 VHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY  437 (590)
T ss_dssp             CCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCB
T ss_pred             eeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcE
Confidence                    011233578999988  8889977799999999999999999998733       233321      24  9


Q ss_pred             EEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          193 VHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       193 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |+|||+|+++ +|.++++||.||+||++|+||+|.
T Consensus       438 ~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~  471 (590)
T 3kxw_A          438 LRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQ  471 (590)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHH
T ss_pred             EecCcEEEEE-CCEEEEEcCccceEEECCEecCHH
Confidence            9999999998 999999999999999999999884

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.5e-36  Score=277.80  Aligned_cols=218  Identities=18%  Similarity=0.199  Sum_probs=188.2

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ...++++++|++++.+|++|..+... ++.+|+.|+++++.+.   .++..+.+.++++++|+++++|++++.+.+..  
T Consensus       639 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~--  715 (1304)
T 2vsq_A          639 VDYMAFSDQDTFLSVSNYAFDAFTFD-FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG--  715 (1304)
T ss_dssp             CCSSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC--
T ss_pred             HHhcCCCCCCEEEEECCccHHHHHHH-HHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc--
Confidence            45678899999999999999988876 8899999999999874   68999999999999999999999999997652  


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCC--CCCCCCCccccCCCceEEEEeCC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--GSRNIGSAGALAPGVEALIVSVD  159 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~i~d~~  159 (228)
                       ...++++|.+++|||++++++.+++.+.+++.+++|.||+||++.+++......  ......++|+|++++++.|+| +
T Consensus       716 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~  793 (1304)
T 2vsq_A          716 -EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-E  793 (1304)
T ss_dssp             -SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-T
T ss_pred             -hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-C
Confidence             223578999999999999999999999887889999999999998776543222  223446899999999999999 8


Q ss_pred             CCCCCCCCCceEEEEecCccccc-------ccccc------cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096          160 TQKPLPPNQLGEIWLRGPNMMRA-------TKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       160 ~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~------~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                      ++++++.|+.|||+|+|+.++..       +.+.|      ..++||+|||+|++++||.++++||+||+||++|++|.|
T Consensus       794 ~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~  873 (1304)
T 2vsq_A          794 QSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIEL  873 (1304)
T ss_dssp             TSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred             CcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCH
Confidence            89999999999999999998873       23333      235699999999999999999999999999999999987


Q ss_pred             C
Q 027096          227 N  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       874 ~  874 (1304)
T 2vsq_A          874 E  874 (1304)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=2e-36  Score=256.43  Aligned_cols=214  Identities=16%  Similarity=0.191  Sum_probs=168.3

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCC-HHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD-LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~   85 (228)
                      .+.+...+++++.+|++|..++.. ++.++..|+++++.+.+. +..+.+.++++++|+++++|++++.+...    ...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~  292 (562)
T 3ite_A          218 SLELGGVGKFLCLASRAFDVHIGE-MFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PED  292 (562)
T ss_dssp             GGGCTTTCEEECCSCTTSTHHHHH-HHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGG
T ss_pred             hcccCcCceEEEecCchhhhhHHH-HHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccc
Confidence            356788899999999999988876 788999999999876543 56788999999999999999998877433    345


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      ++++|.+++||+++++++.+++++.+ +.++++.||+||++..+....... .....++|+|+++++++++|++++++++
T Consensus       293 ~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~  370 (562)
T 3ite_A          293 APHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVK  370 (562)
T ss_dssp             STTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCC
T ss_pred             cCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCC
Confidence            78999999999999999999998876 799999999999988766544332 2345689999999999999978889999


Q ss_pred             CCCceEEEEecCcccccccc-------cc-cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMRATKL-------TI-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~~~~~-------~~-~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|||+|+|+.++..+..       .+ +.++||+|||+|++|+||.++++||.||+||++|+||+|.
T Consensus       371 ~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~  440 (562)
T 3ite_A          371 KGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELG  440 (562)
T ss_dssp             TTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------
T ss_pred             CCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHH
Confidence            99999999999999873322       21 2234999999999999999999999999999999999985

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=2.8e-36  Score=248.23  Aligned_cols=210  Identities=16%  Similarity=0.140  Sum_probs=177.4

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC--
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--   84 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--   84 (228)
                      .++++++|++++.+|++|..+....++.++..|+++++.+..++..+++.|+++++|+++++|+++..|++.......  
T Consensus       124 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  203 (436)
T 3qov_A          124 MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP  203 (436)
T ss_dssp             HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT
T ss_pred             HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc
Confidence            358899999999999876666666688899999999999888999999999999999999999999999876443333  


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~  164 (228)
                      .++++|.+++||+++++++.+++++.| ++++++.||+||+++.+......    .....+.|.++++++++|+++++++
T Consensus       204 ~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~  278 (436)
T 3qov_A          204 RETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPV  278 (436)
T ss_dssp             TSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEEGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBC
T ss_pred             ccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcchhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCC
Confidence            378999999999999999999999998 89999999999995442222111    1123566778999999998899999


Q ss_pred             CCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCCC------c---EEEecccCCceeecCeEeecC
Q 027096          165 PPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDG------Q---LYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g------~---~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +.|+.|||+|++..     ...+ .++||+|||+++++++|      .   +++.||.||+||++|++|+|.
T Consensus       279 ~~g~~Gel~v~~~~-----~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~  344 (436)
T 3qov_A          279 PEGEIGELVLTTLD-----REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPM  344 (436)
T ss_dssp             STTCCEEEEEEESS-----CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHH
T ss_pred             CCCCceEEEEeccC-----cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHH
Confidence            99999999999843     2334 67899999999999998      4   699999999999999999984

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=3.8e-35  Score=241.58  Aligned_cols=209  Identities=19%  Similarity=0.200  Sum_probs=174.1

Q ss_pred             cccCCCCcEEEEecch-hhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC-
Q 027096            7 ETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF-   84 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~-   84 (228)
                      .++++++|++++.+|+ +|..++.. ++.++..|+++++.+.++++.+++.|+++++|+++++|+++..|++....... 
T Consensus       128 ~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~  206 (437)
T 2y27_A          128 AAGARRGDKVHVSYGYGLFTGGLGA-HYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD  206 (437)
T ss_dssp             HTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred             HcCCCCCCEEEEcccccccccchHH-HHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC
Confidence            4788999999999998 67777765 78899999999988888999999999999999999999999999875432222 


Q ss_pred             -CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCc-eeeccCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 027096           85 -DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI-ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  162 (228)
Q Consensus        85 -~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~-~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~  162 (228)
                       .++++|.+++||+++++++.+++++.| ++++++.||+||+++. +.......    ....+.|.+++.++++|+++++
T Consensus       207 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~~----~~g~~~~~~~~~~~i~d~~~g~  281 (437)
T 2y27_A          207 PVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECVET----KDGPTIWEDHFYPEIIDPETGE  281 (437)
T ss_dssp             GGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEETTTTEEEEEECCTTT----CSSCEECTTTEEEEEECTTTCC
T ss_pred             cccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCchhhcCCeeEEecCCC----CCceeEccCceEEEEEcCCCCC
Confidence             247899999999999999999999988 7999999999998432 33221111    1124557789999999977899


Q ss_pred             CCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcC-CCcE-----EEecccCCceeecCeEeecC
Q 027096          163 PLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDG-DGQL-----YVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       163 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.|+.|||+|++..     ...+ .++||+|||++++++ +|.+     ++.||.||+||++|++|+|.
T Consensus       282 ~~~~g~~Gel~v~~~t-----~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~  346 (437)
T 2y27_A          282 VLPDGELGELVFTSLT-----KEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPT  346 (437)
T ss_dssp             BCCTTCCEEEEEEESS-----CSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHH
T ss_pred             CCCCCCccEEEEecCC-----cCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHH
Confidence            9999999999999832     3344 578999999999998 6985     89999999999999999984

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=6.6e-35  Score=240.54  Aligned_cols=209  Identities=21%  Similarity=0.219  Sum_probs=173.8

Q ss_pred             cccCCCCcEEEEecch-hhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC-
Q 027096            7 ETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF-   84 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~-   84 (228)
                      .++++++|++++.+|+ +|..++.. ++.++..|+++++.+.++++.+++.|+++++|+++++|+++..|++....... 
T Consensus       130 ~~~~~~~d~~l~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~  208 (443)
T 2y4o_A          130 AAGGRPGDTLHNAFGYGLFTGGLGI-HYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD  208 (443)
T ss_dssp             HTTCCTTCEEEECSCCSSSHHHHHH-HHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred             HcCCCCCCEEEEeccCcccccHHHH-HHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC
Confidence            5788999999999998 56666654 78889999999998888999999999999999999999999999875432222 


Q ss_pred             -CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCc-eeeccCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 027096           85 -DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI-ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  162 (228)
Q Consensus        85 -~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~-~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~  162 (228)
                       .++++|.+++||+++++++.+++++.| ++++++.||+||+++. +.......   ..+ .+.|.++++++++|+++++
T Consensus       209 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~~---~~g-~~~~~~~~~~~i~d~~~g~  283 (443)
T 2y4o_A          209 PAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVET---KDG-PVIWEDHFYPEIIDPVTGE  283 (443)
T ss_dssp             GGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEETTTTEEEEEEECTTT---CCS-EEECTTTEEEEEECTTTCC
T ss_pred             cccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCchhhcCCeEEeccCCC---CCc-eEEccCCeEEEEEcCCCCC
Confidence             247899999999999999999999988 7999999999997432 32221111   112 4456789999999977899


Q ss_pred             CCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCC-CcE-----EEecccCCceeecCeEeecC
Q 027096          163 PLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGD-GQL-----YVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       163 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++.|+.|||+|++..     ...+ .++||+|||+++++++ |.+     ++.||.||+||++|.+|+|.
T Consensus       284 ~~~~G~~Gel~v~~~t-----~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~  348 (443)
T 2y4o_A          284 VLPDGSQGELVFTSLT-----KEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPS  348 (443)
T ss_dssp             BCCTTCCEEEEEEESS-----CSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHH
T ss_pred             CCCCCCceEEEEeCCC-----cccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHH
Confidence            9999999999999843     3344 5789999999999999 986     89999999999999999984

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=2.4e-35  Score=245.37  Aligned_cols=204  Identities=20%  Similarity=0.337  Sum_probs=169.2

Q ss_pred             ccccCCC------CcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhcCceEEEechHHHHHH
Q 027096            6 QETAGEL------DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILAL   75 (228)
Q Consensus         6 ~~~~~~~------~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l   75 (228)
                      +.+++++      +|++++++|++|..|+...++.+|+.|+++++.+..    ++..+++.++++++| +.++|+++..+
T Consensus       217 ~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l  295 (480)
T 3t5a_A          217 SGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFEL  295 (480)
T ss_dssp             HHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHH
T ss_pred             HHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHH
Confidence            3455565      999999999999999877688999999999998753    899999999999999 78889988888


Q ss_pred             Hhc----CCCCCCCCCCceEEEEcccCCCHHHHHHHHHhC-----CCCeEEecccccccCCceeeccCCCC---------
Q 027096           76 AKH----GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV-----PSATVIQGYGLTETSGIATMENSFAG---------  137 (228)
Q Consensus        76 ~~~----~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~-----~~~~l~~~yG~tE~g~~~~~~~~~~~---------  137 (228)
                      +..    .......+++||.+++||+++++++.+++++.|     +++.+++.||+||++.+++.......         
T Consensus       296 ~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~  375 (480)
T 3t5a_A          296 AARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTE  375 (480)
T ss_dssp             HHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHH
T ss_pred             HHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHH
Confidence            753    233456789999999999999999999999988     45689999999999987765443211         


Q ss_pred             --------------CCCCCCccccCCCceEEEEeCCCCCCCCCCCceEEEEecCccccc-------cccccc--------
Q 027096          138 --------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRA-------TKLTID--------  188 (228)
Q Consensus       138 --------------~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~-------~~~~~~--------  188 (228)
                                    .....++|+|++ ++++|+|.+++++++.|+.|||+|+|+.++..       +.+.|.        
T Consensus       376 ~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~  454 (480)
T 3t5a_A          376 SLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSP  454 (480)
T ss_dssp             HHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCT
T ss_pred             HhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccC
Confidence                          123357999999 99999997778999999999999999999873       233332        


Q ss_pred             ---CCCeEEcCceEEEcCCCcEEEecc
Q 027096          189 ---KKGWVHTGDLGYFDGDGQLYVVDR  212 (228)
Q Consensus       189 ---~~~~~~TGD~~~~~~~g~~~~~GR  212 (228)
                         .+|||+|||+|+++ ||.++++||
T Consensus       455 ~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          455 GTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             CCCCCCeeeccceeeEE-CCEEEEeCC
Confidence               56799999999996 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=9.1e-35  Score=233.34  Aligned_cols=195  Identities=16%  Similarity=0.193  Sum_probs=164.4

Q ss_pred             ecccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         4 ~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      ....++++++|++++++|++|++|+.. ++.+++.|+++++.+..  ...++.++++++|+++++|++++.+++... ..
T Consensus        69 ~~~~~~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~  144 (358)
T 4gs5_A           69 TGKALSLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSA-TS  144 (358)
T ss_dssp             HHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TG
T ss_pred             HHHHhCCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCcc--ccHHHHHHHhCCeEEEcChHHHHHhhcccc-cc
Confidence            346788999999999999999999987 78889999999887542  123567889999999999999999988754 34


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      ..+++||.+++||+++++++.+++++.  +.++++.||+||++..+.......  ...+.+|.+.|++++.+.+      
T Consensus       145 ~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~~~~~~--~~~g~~~~~~pgv~~~~~~------  214 (358)
T 4gs5_A          145 GQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVALKALNG--PEASELYVFLPGIQYGVDE------  214 (358)
T ss_dssp             GGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEEEECSS--TTCCSCEEECTTCEEEECT------
T ss_pred             ccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeecccccc--cccceeeccCCCeEEEecC------
Confidence            468899999999999999999999875  789999999999998776654432  3456789999999887643      


Q ss_pred             CCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                           .|||+++++..         .+|||+|||+|++|++| +.++||.||+||++|+||+|+
T Consensus       215 -----~Gel~~~g~~~---------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~  263 (358)
T 4gs5_A          215 -----RGCLHISGAVT---------NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLD  263 (358)
T ss_dssp             -----TSEEEEESGGG---------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHH
T ss_pred             -----cCceEEecccc---------cCcceecCCccccccCc-eEEcccccCeEEECCEEECHH
Confidence                 48999998643         67899999999999988 777899999999999999984

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=2e-28  Score=197.36  Aligned_cols=201  Identities=16%  Similarity=0.159  Sum_probs=154.8

Q ss_pred             ccccCCCCcEEEEecch-hhHHhHHHHHHHHhhcCcEEEEcCCCCHH-----------------------HHHHHHHhcC
Q 027096            6 QETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLE-----------------------MFLRAIEKHR   61 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~~-----------------------~~~~~i~~~~   61 (228)
                      ..++++++|++++.+|+ +|..++.. .+.++..|+ +++...+++.                       .+++.+++++
T Consensus       128 ~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  205 (369)
T 3hgu_A          128 QHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQD  205 (369)
T ss_dssp             TTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCC
Confidence            45678899999999999 99999887 566699999 5666667777                       8888999999


Q ss_pred             ceEEEechHHHHHHHhcCCCCCCCCCCceEEEEcccCCCHHHHHHHH-HhCCCCeEEecccccccCCceeeccCCCCCCC
Q 027096           62 VTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTETSGIATMENSFAGSRN  140 (228)
Q Consensus        62 ~t~l~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~-~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~  140 (228)
                      +|++.++|+++..|++........++++|.+++||+++++++++++. +.||++++++.||+||+++++..++.      
T Consensus       206 ~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------  279 (369)
T 3hgu_A          206 IRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------  279 (369)
T ss_dssp             EEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------
T ss_pred             CCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc------
Confidence            99999999999999876443334567899999999999999999999 89989999999999999876643321      


Q ss_pred             CCCcccc------CCCceEEEEeCCCCCCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcCC--C-------
Q 027096          141 IGSAGAL------APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDGD--G-------  205 (228)
Q Consensus       141 ~~~~g~p------~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------  205 (228)
                       .++|+|      .++++++|+|++++++++.|+.|||+|++...     ..+  --.|+|||++++.+.  |       
T Consensus       280 -~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~-----~~~--l~ry~tgD~~~~~~~~~g~~~d~~~  351 (369)
T 3hgu_A          280 -TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSP-----WAF--YPRVAERDTAIRLPGVSGFAGDRLA  351 (369)
T ss_dssp             -CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEET-----TEE--EEEEEEEEEEEEECCSTTCSSCEEE
T ss_pred             -ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCc-----ccc--cccccCCceEEEecCCCCCcCcccc
Confidence             147788      99999999997699999999999999987432     111  125999999998543  3       


Q ss_pred             cEEEecccCCceeecCe
Q 027096          206 QLYVVDRIKELIKYKGF  222 (228)
Q Consensus       206 ~~~~~GR~~d~i~~~G~  222 (228)
                      .+..++|.|+..++.|.
T Consensus       352 ~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          352 DIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEECC-----------
T ss_pred             cceeccccCCCceeeec
Confidence            25667788888877763

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.52  E-value=1.9e-07  Score=78.37  Aligned_cols=125  Identities=12%  Similarity=0.118  Sum_probs=77.8

Q ss_pred             CCC---ceEEEEcccCCCHHHHHHHHHhCCCCeEE-ecccccccCCceeeccCCCCCCCCCCcc-ccCCC-ceEEEEeCC
Q 027096           86 LSS---LKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSAG-ALAPG-VEALIVSVD  159 (228)
Q Consensus        86 ~~~---lr~~~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~g~~~~~~~~~~~~~~~~~~g-~p~~~-~~~~i~d~~  159 (228)
                      .++   +..++.||-   ..-.+++++.+++.++. ..|++||+ .+.....+..   .+...+ ..+++ +-.+.++.+
T Consensus       296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~---~~~~~~~~L~~~~~ffEFip~~  368 (581)
T 4eql_A          296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLC---KPEDVSYTFMPNMSYFEFIPMD  368 (581)
T ss_dssp             STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTS---CGGGCCEEECTTSSEEEEEECS
T ss_pred             CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCCC---CcccCceeecCCcEEEEEEecc
Confidence            466   444444552   44445566666678877 99999995 3333222110   001111 11222 344555422


Q ss_pred             C---C-----CCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcC----CCcEEEecccCCceeecCeEeecC
Q 027096          160 T---Q-----KPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       160 ~---~-----~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +   .     ..++.|+.+||+|++..-          ---|++||++++..    ...+.+.||.++++++.|++|+++
T Consensus       369 ~~~~~~~v~l~eVe~G~~YelViTt~~G----------L~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~  438 (581)
T 4eql_A          369 GGDKNDVVDLEDVKLGCTYEPVVTNFAG----------LYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEE  438 (581)
T ss_dssp             TTCCSSCEEGGGCCTTCEEEEEEECSSS----------CCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHH
T ss_pred             ccCCCcEeCHHHcCCCceEEEEEeeccc----------eeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHH
Confidence            2   1     356789999999987431          11399999999864    367999999999999999999874

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.46  E-value=2e-07  Score=78.40  Aligned_cols=125  Identities=12%  Similarity=0.088  Sum_probs=76.5

Q ss_pred             CCCce---EEEEcccCCCHHHHHHHHHhCCCCeEE-ecccccccCCceeeccCCCCCCCCCCc-cccCCC-ceEEEEeCC
Q 027096           86 LSSLK---LVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSA-GALAPG-VEALIVSVD  159 (228)
Q Consensus        86 ~~~lr---~~~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~g~~~~~~~~~~~~~~~~~~-g~p~~~-~~~~i~d~~  159 (228)
                      .+++|   .++.||  + ..-.++++..+++.++. ..|++||. .+.....+..   .+... ...+++ .-.+.++.+
T Consensus       301 WPnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~---~p~~~~~~L~p~~~ffEFIP~~  373 (609)
T 4b2g_A          301 WPNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLNPMS---KPSEVSYTIMPNMAYFEFLPHE  373 (609)
T ss_dssp             STTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSCTTS---CGGGCCEEECTTSCEEEEEEGG
T ss_pred             CCCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccce-eeeeecCCCC---CcccCceeecCCcEEEEEEecc
Confidence            46655   344444  2 33345565655677777 99999995 3333322110   00111 112222 334444322


Q ss_pred             CC---------------CCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcC----CCcEEEecccCCceeec
Q 027096          160 TQ---------------KPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIKYK  220 (228)
Q Consensus       160 ~~---------------~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~~~  220 (228)
                      +.               ..++.|+.+||+|+...-.          --|++||++++..    ...+.+.||.+++|++.
T Consensus       374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~GL----------~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~  443 (609)
T 4b2g_A          374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGL----------YRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSID  443 (609)
T ss_dssp             GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTTSC----------CSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSS
T ss_pred             ccccccccCCCCccccHhHcCCCCeEEEehhhhhhh----------hheecCCEEEEeecCCCCcEEEEEEecCCeEEcc
Confidence            21               3577899999999764311          1399999999863    46899999999999999


Q ss_pred             CeEeecC
Q 027096          221 GFQVTSN  227 (228)
Q Consensus       221 G~~v~p~  227 (228)
                      |++|+++
T Consensus       444 Geki~~~  450 (609)
T 4b2g_A          444 SDKTDEA  450 (609)
T ss_dssp             SCCBCHH
T ss_pred             ccCCCHH
Confidence            9999874

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.33  E-value=1.1e-06  Score=73.75  Aligned_cols=126  Identities=13%  Similarity=0.035  Sum_probs=76.6

Q ss_pred             CCCceE--EEEcccCCCHHHHHHHHHhCCCCeEE-ecccccccCCceeeccCCCCCCCCCC-ccccCCC-ceEEEEeCCC
Q 027096           86 LSSLKL--VGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGS-AGALAPG-VEALIVSVDT  160 (228)
Q Consensus        86 ~~~lr~--~~~~G~~l~~~~~~~~~~~~~~~~l~-~~yG~tE~g~~~~~~~~~~~~~~~~~-~g~p~~~-~~~~i~d~~~  160 (228)
                      .++++.  ++.+|. + ..-.+++++.+++.++. ..|++||. .+.....+..   .++. ....+++ .-.+.++.++
T Consensus       301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~---~~~~~~~~L~p~~~ffEFiP~~~  374 (581)
T 4epl_A          301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRL---SPEEATFAVIPNLGYFEFLPVSE  374 (581)
T ss_dssp             CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTS---CTTTCCEEECTTSCEEEEEEC--
T ss_pred             CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCC---CccccceeecCCcEEEEEEeccc
Confidence            567753  334442 3 33345566666677777 99999995 3333322211   1111 1112222 2333333221


Q ss_pred             -C---------CCCCCCCceEEEEecCcccccccccccCCCeEEcCceEEEcC----CCcEEEecccCCceeecCeEeec
Q 027096          161 -Q---------KPLPPNQLGEIWLRGPNMMRATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       161 -~---------~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                       +         ..++.|+.+||+|++...          ---|++||++++..    ...+.+.||.++++++.|+++++
T Consensus       375 ~~~~~~~~v~l~eve~G~~YelviTt~~G----------L~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~  444 (581)
T 4epl_A          375 TGEGEEKPVGLTQVKIGEEYEVVITNYAG----------LYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTE  444 (581)
T ss_dssp             -----CCCEEGGGCCTTCEEEEEEESTTS----------CSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred             ccCCCCceeeHHHcCCCCeEEEEEeeccc----------eeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCH
Confidence             1         367889999999987431          11399999999853    25799999999999999999986


Q ss_pred             C
Q 027096          227 N  227 (228)
Q Consensus       227 ~  227 (228)
                      +
T Consensus       445 ~  445 (581)
T 4epl_A          445 R  445 (581)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=82.03  E-value=6.6  Score=32.65  Aligned_cols=66  Identities=6%  Similarity=-0.051  Sum_probs=53.9

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL   75 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l   75 (228)
                      .++.++|+|...++-+..  +...+++++..|+..+..+ ....+.+...+++.++..++..+.....+
T Consensus        72 ~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~  138 (549)
T 3g7s_A           72 KGVRKGEHVGVCIPNSID--YVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENF  138 (549)
T ss_dssp             TTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred             cCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence            588999999999987654  3444789999999999986 47889999999999999998887655544

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=81.52  E-value=6.9  Score=32.50  Aligned_cols=67  Identities=4%  Similarity=-0.095  Sum_probs=54.1

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL   75 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l   75 (228)
                      ..++.++|++...++-+..  +...+++++..|+.++..+ ....+.+...+++.++..++..+.....+
T Consensus        66 ~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  133 (541)
T 1v25_A           66 ALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV  133 (541)
T ss_dssp             HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred             HcCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence            3688999999999987654  3344789999999999986 46889999999999999999887765443

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=80.75  E-value=4.8  Score=33.74  Aligned_cols=66  Identities=12%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL   75 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l   75 (228)
                      +++.++|+|...+|-+..  +...+++++..|+.++..+ ....+.+...+++.++..+++.+.....+
T Consensus        94 ~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  160 (570)
T 3c5e_A           94 CGLQRGDRVAVVLPRVPE--WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV  160 (570)
T ss_dssp             TCCCTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred             cCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence            488999999999987654  3344789999999999986 46888999999999999988877655444

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=80.16  E-value=6.6  Score=32.42  Aligned_cols=66  Identities=12%  Similarity=0.082  Sum_probs=52.5

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA   74 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~   74 (228)
                      ..++.++|++...++-+..  +...+++++..|+..+..+ ....+.+...+++.++..++..+.....
T Consensus        67 ~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~  133 (529)
T 2v7b_A           67 TLGVHPEERILLVMLDTVA--LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQN  133 (529)
T ss_dssp             HTTCCTTCEEEEECCSSTH--HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred             HcCCCCCCEEEEEcCCcHH--HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhH
Confidence            3578999999999987654  3344788999999999886 4788899999999999988887665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-52
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-41
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-39
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	6e-38
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	3e-21
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	9e-21
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-16

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  177 bits (449), Expect = 2e-52
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 20/229 (8%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 296 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 355

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 356 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 415

Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG--PNMMR--- 181
           G        A     GSA     GV+  +V  +   P      G + +    P   R   
Sbjct: 416 GFMITPLPGAIELKAGSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLF 474

Query: 182 ----ATKLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                 + T     K    +GD    D DG  ++  R+ +++   G ++
Sbjct: 475 GDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 523

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  146 bits (369), Expect = 3e-41
 Identities = 44/231 (19%), Positives = 94/231 (40%), Gaps = 21/231 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           VF     +  + G   +  G L  G   ++        +   +   I++H+VT  +V P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA--TVIQGYGLTETS 126
            +  L + G   ++   L SL+ +GS   P+  E+ E  ++ +      ++  Y  TE+ 
Sbjct: 343 ALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 402

Query: 127 GIATMENSFAGS-RNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRG--PNMMR- 181
                  +   +    GSA     G++A+++  +T + L  +   G + ++   P+  R 
Sbjct: 403 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFART 462

Query: 182 --------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                            G+  TGD    D DG ++++ R+ +++   G ++
Sbjct: 463 IWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL 513

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  140 bits (353), Expect = 2e-39
 Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 10/217 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L   
Sbjct: 233 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 291

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
            AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    +  +
Sbjct: 292 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI--T 349

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTI 187
             G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M        AT   I
Sbjct: 350 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALI 409

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
           DK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 410 DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 446

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  136 bits (342), Expect = 6e-38
 Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 19/229 (8%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L V+P+FHV    +     L     ++   + D    +   +   VT    VP + 
Sbjct: 212 KDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW 271

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LALA +       L +L+ +  G +   + L+    +      V QGYGLTETS +    
Sbjct: 272 LALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQN 329

Query: 133 ---------NSFAGSRNIGSAGALAPGVEALIVSVDTQK-PLPPNQLGEIWLRGPNMMR- 181
                    +           G   P V   +   + +  P     LGE+ L+GP +   
Sbjct: 330 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 389

Query: 182 ------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                 AT+  +   G+  TGD+  +D +G + + DR+K+LIK  G  +
Sbjct: 390 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI 438

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 89.7 bits (221), Expect = 3e-21
 Identities = 44/199 (22%), Positives = 74/199 (37%), Gaps = 9/199 (4%)

Query: 33  CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
            G L  G  ++L      +     IE+ +VT   +VPPL +        ++ DLSSL+++
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
             G A    E            T+ Q +G      +            + + G      +
Sbjct: 304 QVGGAKFSAEAARRVKAVFG-CTLQQVFG-MAEGLVNYTRLDDPEEIIVNTQGKPMSPYD 361

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMR-------ATKLTIDKKGWVHTGDLGYFDGDG 205
              V  D  + + P + G +  RGP  +R           +  + G+  TGD+     DG
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDG 421

Query: 206 QLYVVDRIKELIKYKGFQV 224
            + V  R K+ I   G +V
Sbjct: 422 YIVVEGRAKDQINRGGEKV 440

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 88.0 bits (217), Expect = 9e-21
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 28/227 (12%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLI 72
                  +     +  +    L   S  I++     D   F + I +  +T I + P   
Sbjct: 209 RIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPP--- 265

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
                   +    + S++ + +  +     L+ +  + V     I  YG TET+  AT  
Sbjct: 266 ---TYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVT---YINAYGPTETTICAT-- 317

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSV--DTQKPLPPNQLGEIWLRGPNMMR--------- 181
              A    IG +  +   ++   + +  +  +     + GE+ + G  + R         
Sbjct: 318 TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELT 377

Query: 182 ----ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
                    +  +    TGD   +  DG +  + RI   +K +G +V
Sbjct: 378 SQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRV 424

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 74.7 bits (182), Expect = 3e-16
 Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 9/217 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257

Query: 75  LAKHGL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P    +  YG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEAMNSLYMR 316

Query: 133 NSFAGSRNIGSAGALAPGVEAL-----IVSVDTQKPLPPNQLGEIWLRGPNMMRATKLTI 187
               G+       +    V        IV+   +  L        ++   N  +AT   +
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL 376

Query: 188 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 224
            + GW  T D+  +  +G + ++ R+ ++I   G  +
Sbjct: 377 -QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.97
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.96
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.94
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	86.39
d1amua_	514	Phenylalanine activating domain of gramicidin synt	82.59
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	80.36

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=7e-40  Score=279.18  Aligned_cols=222  Identities=22%  Similarity=0.277  Sum_probs=189.3

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~   80 (228)
                      ...++++++|++++.+|++|+.++...++.+|++|+++++.++    +++..+++.++++++|+++++|++++.|++...
T Consensus       286 ~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~  365 (643)
T d1pg4a_         286 KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD  365 (643)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG
T ss_pred             HHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcc
Confidence            3457889999999999999999988767889999999999754    488999999999999999999999999987643


Q ss_pred             --CCCCCCCCceEEEEcccCCCHHHHHHHHHhCC--CCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEE
Q 027096           81 --VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV  156 (228)
Q Consensus        81 --~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~  156 (228)
                        ....++++||.++++|+++++++.+++.+.++  ++++++.||+||+++++............+++|+|+++++++++
T Consensus       366 ~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~iv  445 (643)
T d1pg4a_         366 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV  445 (643)
T ss_dssp             GGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEE
T ss_pred             hhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEE
Confidence              24567899999999999999999999999884  47799999999999876654433334466899999999999999


Q ss_pred             eCCCCCCCCCCCceEEEEecCcc--cc-------cccccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEee
Q 027096          157 SVDTQKPLPPNQLGEIWLRGPNM--MR-------ATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  225 (228)
Q Consensus       157 d~~~~~~~~~g~~Gel~v~~~~~--~~-------~~~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~  225 (228)
                      | ++|++++.|+.|||+|+++..  +.       .+...+  ..+|||+|||+|++|+||.++++||+||+||++|++|+
T Consensus       446 d-~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~  524 (643)
T d1pg4a_         446 D-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLG  524 (643)
T ss_dssp             C-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEE
T ss_pred             C-CCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEEC
Confidence            9 789999999999999999653  22       111111  35789999999999999999999999999999999999


Q ss_pred             cC
Q 027096          226 SN  227 (228)
Q Consensus       226 p~  227 (228)
                      |.
T Consensus       525 p~  526 (643)
T d1pg4a_         525 TA  526 (643)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=4.1e-36  Score=250.89  Aligned_cols=218  Identities=40%  Similarity=0.663  Sum_probs=188.6

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCCCC
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~   86 (228)
                      ...+++++++++++|++|..++.. .+..+..++..+.....+.......+..+++|.++.+|+.+..+..........+
T Consensus       225 ~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~  303 (541)
T d1lcia_         225 GNQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDL  303 (541)
T ss_dssp             SCCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCC
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccccchhHHHHhhhhccccccCcccccccccccccccccc
Confidence            346788999999999999999887 6777888888888888899999999999999999999999999998888777888


Q ss_pred             CCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 027096           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (228)
Q Consensus        87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~  166 (228)
                      +++|.+++||+++++...+++.+.++...+++.||+||++..++.....  ....+++|+|+++++++|+|++++++++.
T Consensus       304 ~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~~~~~~~i~d~d~~~~~~~  381 (541)
T d1lcia_         304 SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGV  381 (541)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBCCT
T ss_pred             ccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcc--cCCCCccccccCCCEEEEEECCCCcCCCC
Confidence            9999999999999999999999999777899999999999887665433  34567899999999999999889999999


Q ss_pred             CCceEEEEecCcccccc-------cccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          167 NQLGEIWLRGPNMMRAT-------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       167 g~~Gel~v~~~~~~~~~-------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      |+.|||+|+|+.++..+       ...+..++||+|||+|+++++|.+++.||.||+||++|++|+|.
T Consensus       382 g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~  449 (541)
T d1lcia_         382 NQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPA  449 (541)
T ss_dssp             TCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHH
T ss_pred             CCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHH
Confidence            99999999999988743       33345689999999999999999999999999999999999985

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-35  Score=248.22  Aligned_cols=218  Identities=28%  Similarity=0.380  Sum_probs=185.6

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~   84 (228)
                      ..+...+.|++++.+|++|..++... +.++..|++.++. +.+++..+...++++++|++.++|+++..+++.......
T Consensus       205 ~~~~~~~~d~~~~~~p~~~~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~  283 (534)
T d1v25a_         205 DGTALSEKDVVLPVVPMFHVNAWCLP-YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH  283 (534)
T ss_dssp             TTTCCCTTCEEEECSCTTSHHHHTHH-HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhcccccc-ceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccc
Confidence            45677889999999999999999884 5556666665555 568999999999999999999999999999887666667


Q ss_pred             CCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCC---------CCCCCccccCCCceEEE
Q 027096           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS---------RNIGSAGALAPGVEALI  155 (228)
Q Consensus        85 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~---------~~~~~~g~p~~~~~~~i  155 (228)
                      .+++||.+++||++++++..+++++.  +.++++.||+||++.++.........         ...+++|+|+++++++|
T Consensus       284 ~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i  361 (534)
T d1v25a_         284 RLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRV  361 (534)
T ss_dssp             CCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEE
T ss_pred             cccceeEEEEecCCCCHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEE
Confidence            88999999999999999999999875  67999999999999987664332211         12358999999999999


Q ss_pred             EeCCCCCCCCC--CCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeec
Q 027096          156 VSVDTQKPLPP--NQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  226 (228)
Q Consensus       156 ~d~~~~~~~~~--g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p  226 (228)
                      +| +++++++.  ++.|||+|+|+.++..       +...+..+|||+|||+|++++||.++++||.||+||++|++|+|
T Consensus       362 ~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~  440 (534)
T d1v25a_         362 AD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS  440 (534)
T ss_dssp             EC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEH
T ss_pred             EC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECH
Confidence            99 77877765  6789999999999873       34566788999999999999999999999999999999999998


Q ss_pred             C
Q 027096          227 N  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       441 ~  441 (534)
T d1v25a_         441 V  441 (534)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-36  Score=255.05  Aligned_cols=222  Identities=20%  Similarity=0.318  Sum_probs=184.5

Q ss_pred             ccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         6 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ..++++++|++++.+|++|+.++...++.+|+.|+++++.+.    +++..+++.++++++|+++++|++++.|.+....
T Consensus       274 ~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  353 (640)
T d1ry2a_         274 YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS  353 (640)
T ss_dssp             HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred             hhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccc
Confidence            356889999999999999999987768889999999888764    3789999999999999999999999998876432


Q ss_pred             --CCCCCCCceEEEEcccCCCHHHHHHHHHhCCC--CeEEecccccccCCceeeccCC-CCCCCCCCccccCCCceEEEE
Q 027096           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSF-AGSRNIGSAGALAPGVEALIV  156 (228)
Q Consensus        82 --~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~--~~l~~~yG~tE~g~~~~~~~~~-~~~~~~~~~g~p~~~~~~~i~  156 (228)
                        ...++++||.++++|+++++++.+++++.++.  ..+++.||+||++......... ......+++|.|+++++++++
T Consensus       354 ~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~  433 (640)
T d1ry2a_         354 YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL  433 (640)
T ss_dssp             SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEE
T ss_pred             ccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEE
Confidence              45678999999999999999999999999853  5699999999999876554332 223456789999999999999


Q ss_pred             eCCCCCCC-CCCCceEEEEecC--ccccc-------ccccc--cCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEe
Q 027096          157 SVDTQKPL-PPNQLGEIWLRGP--NMMRA-------TKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  224 (228)
Q Consensus       157 d~~~~~~~-~~g~~Gel~v~~~--~~~~~-------~~~~~--~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v  224 (228)
                      |+++++.+ +.++.|||+++++  .++..       +...+  +.+|||+|||+|++|+||.++++||+||+||++|++|
T Consensus       434 d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I  513 (640)
T d1ry2a_         434 DPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL  513 (640)
T ss_dssp             CSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCB
T ss_pred             eCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEE
Confidence            96665544 4466799999985  44441       22222  3568999999999999999999999999999999999


Q ss_pred             ecC
Q 027096          225 TSN  227 (228)
Q Consensus       225 ~p~  227 (228)
                      +|.
T Consensus       514 ~p~  516 (640)
T d1ry2a_         514 STA  516 (640)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            984

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.97  E-value=2.6e-30  Score=214.47  Aligned_cols=212  Identities=18%  Similarity=0.198  Sum_probs=177.9

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhcCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~   81 (228)
                      ...+...++|++++.+|++|..++.. ++.++..|+++++...   .+....++.+..+.++.+..+|.....      .
T Consensus       199 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  271 (514)
T d1amua_         199 ENSLNVTEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------L  271 (514)
T ss_dssp             HHTSCCCTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------S
T ss_pred             cccccccccccccceecccccccccc-ccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccc------c
Confidence            45678899999999999999999987 7788888999888753   567888999999999999999875442      2


Q ss_pred             CCCCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCC-CCCCCCCCccccCCCceEEEEeCCC
Q 027096           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF-AGSRNIGSAGALAPGVEALIVSVDT  160 (228)
Q Consensus        82 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~-~~~~~~~~~g~p~~~~~~~i~d~~~  160 (228)
                      ....+.+++.++++|+++++++.+++.+   +..+++.||+||++.++...... .........+.+.++..+.+.| ++
T Consensus       272 ~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~  347 (514)
T d1amua_         272 DPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-EN  347 (514)
T ss_dssp             CTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TT
T ss_pred             cccccccccEEEEecccCCHHHhhhhcc---ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-cc
Confidence            4456789999999999999999987765   57899999999999987554332 2233456788999999999999 99


Q ss_pred             CCCCCCCCceEEEEecCcccccccc-------c------ccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          161 QKPLPPNQLGEIWLRGPNMMRATKL-------T------IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       161 ~~~~~~g~~Gel~v~~~~~~~~~~~-------~------~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      +++++.|+.|||+|++|.++..+..       .      .+.++||+|||+|++|++|.++++||++|+||++|+||+|+
T Consensus       348 ~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~  427 (514)
T d1amua_         348 LQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELE  427 (514)
T ss_dssp             SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHH
T ss_pred             ceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHH
Confidence            9999999999999999998873211       1      13478999999999999999999999999999999999985

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=4.9e-30  Score=213.52  Aligned_cols=221  Identities=24%  Similarity=0.319  Sum_probs=184.0

Q ss_pred             cccccCCCCcEEEEecchhhHHhHHHH-HHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcCCCCC
Q 027096            5 DQETAGELDYVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (228)
Q Consensus         5 ~~~~~~~~~d~~~~~~p~~~~~g~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~   83 (228)
                      .+.+++.++|++++.+|++|.+++... +...+..|.+++..+.+++..+...+++++++.+..+|+.+..+........
T Consensus       215 ~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (536)
T d1mdba_         215 VEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR  294 (536)
T ss_dssp             HHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC
T ss_pred             ccccccccccccccccccccccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc
Confidence            456789999999999999999987543 4444555788888788999999999999999999999999998887766666


Q ss_pred             CCCCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 027096           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (228)
Q Consensus        84 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~  163 (228)
                      ..+++++.+++||+++++...+++.+.+ +......|+.+|.+.......... ....+.+|.|+++....+++.+++++
T Consensus       295 ~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~p~~~~~~~~v~~~~g~~  372 (536)
T d1mdba_         295 DDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPE-EIIVNTQGKPMSPYDESRVWDDHDRD  372 (536)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSCH-HHHHHCCCEESSTTCEEEEECTTSCB
T ss_pred             cccCcceeEEEeccccccccccchhhcc-Cceeeecccccccccccccccccc-ccccCCcccCCCCcceEEEEcCCCCe
Confidence            7788999999999999999999999998 677888888888766554433221 23446789998766666666589999


Q ss_pred             CCCCCceEEEEecCccccc-------ccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          164 LPPNQLGEIWLRGPNMMRA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       164 ~~~g~~Gel~v~~~~~~~~-------~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      ++.++.|||+++|+.++..       +...+..++||+|||++++++||.+++.||.||+||++|++|+|+
T Consensus       373 ~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~  443 (536)
T d1mdba_         373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE  443 (536)
T ss_dssp             CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHH
T ss_pred             ecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHH
Confidence            9999999999999998873       334556789999999999999999999999999999999999984

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.94  E-value=1.6e-26  Score=190.23  Aligned_cols=215  Identities=20%  Similarity=0.321  Sum_probs=171.2

Q ss_pred             ccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhcC--CCCCCC
Q 027096            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFD   85 (228)
Q Consensus         8 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~--~~~~~~   85 (228)
                      ......++++..+|++|..+.....+.+...+.++++.+.+++..+...+..++++....+|+.+..+....  ......
T Consensus       191 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (503)
T d3cw9a1         191 LRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK  270 (503)
T ss_dssp             CCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCC
T ss_pred             ccccccccccccCccccccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccccc
Confidence            445677899999999888888877888888999999999999999999999999999999999888765532  234456


Q ss_pred             CCCceEEEEcccCCCHHHHHHHHHhCCCCeEEecccccccCCceeeccCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 027096           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (228)
Q Consensus        86 ~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~l~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~  165 (228)
                      +++||.++++|++++++..+++.+.+ +..+.+.||.||++..+.........  ....+.+.+.....+.+ +.++.++
T Consensus       271 ~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~  346 (503)
T d3cw9a1         271 LDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMRQPKTGT--EMAPGFFSEVRIVRIGG-GVDEIVA  346 (503)
T ss_dssp             CTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEESCSSSS--EEBCCTTCCEEEECTTS-CTTCBCC
T ss_pred             ccceEEEEeccccccccccccccccc-cccccccccccccceeeeeccccccc--cccccccccceeeeeec-ccCcccC
Confidence            78899999999999999999999988 67899999999998776654433211  12222333333333333 7788999


Q ss_pred             CCCceEEEEecCcccc--------cccccccCCCeEEcCceEEEcCCCcEEEecccCCceeecCeEeecC
Q 027096          166 PNQLGEIWLRGPNMMR--------ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  227 (228)
Q Consensus       166 ~g~~Gel~v~~~~~~~--------~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  227 (228)
                      .|+.|++.+.+.....        .+.+.+ .+|||+|||+|++++||.++++||+||+||++|++|+|.
T Consensus       347 ~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~  415 (503)
T d3cw9a1         347 NGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS  415 (503)
T ss_dssp             TTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHH
T ss_pred             CCccccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeEEECCEEECHH
Confidence            9999999887755443        233344 579999999999999999999999999999999999984

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=86.39  E-value=0.9  Score=35.45  Aligned_cols=68  Identities=9%  Similarity=0.035  Sum_probs=55.3

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHH
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA   76 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~   76 (228)
                      ..|++++|+|...++-+..  +...+++++..|+..+..+ ..+.+++...++..+++.+++....+..+.
T Consensus        66 ~~Gi~~Gd~Vai~~~ns~e--~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  134 (541)
T d1lcia_          66 RYGLNTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKIL  134 (541)
T ss_dssp             HHTCCTTCEEEEECSSCSS--THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHH
T ss_pred             HcCcCCCCEEEEEeCCCHH--HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccch
Confidence            3688999999998886543  3344778899999999885 578999999999999999999987766554

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=82.59  E-value=2.4  Score=32.66  Aligned_cols=69  Identities=9%  Similarity=0.069  Sum_probs=56.9

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHh
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAK   77 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~   77 (228)
                      ..+++++|++...+|-+..+  ...+++.+..|+..+..+ .++++.+...+++.++..++..+.....+..
T Consensus        67 ~~Gv~~gd~Vai~~~n~~~~--v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~  136 (514)
T d1amua_          67 EKGIGKDTLVGIMMEKSIDL--FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN  136 (514)
T ss_dssp             HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred             HcCcCCcCEEEEEeCCCHHH--HHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence            36899999999999877654  334788999999999885 5789999999999999999998887776554

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=80.36  E-value=3.6  Score=31.83  Aligned_cols=68  Identities=4%  Similarity=-0.094  Sum_probs=54.9

Q ss_pred             cccCCCCcEEEEecchhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHH
Q 027096            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA   76 (228)
Q Consensus         7 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~   76 (228)
                      ..|++++|++...++-+..  +...+++++..|+..+..+ ..+.+.+...++..++..++..........
T Consensus        59 ~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~  127 (534)
T d1v25a_          59 ALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE  127 (534)
T ss_dssp             HTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred             HCCcCCCCEEEEEeCCCHH--HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHH
Confidence            3578999999999887665  3444789999999999886 478999999999999999988876655543