Citrus Sinensis ID: 027107

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MSEPQNSSEAESSSSNSSLSPTNAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSSSSSSLSSLVSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWDS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccHccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHccccEcccccccccccHHHHcccccHHHccccccccccccccccccccccccccccccEEEcccccccccHHccc
Coil and Loop (DISEMBL)
msepqnsseaessssnsslsptnahqdskkIKRMrdqsskhpvyrgvrmrnwgkWVSEIREprkksriwlgtfptpemaaRAHDVAALSIkgnsailnfpeladslprpnslapRDVQAAAAKAAqmdkfdssssssLSSLVSAmdlstgseeLSEIvelpslgssydyksselrNEFVfvdsvdgwmytppwfqsvevedyqfgvlpessvfsstnfglgegllwds
Flexible Loop (DISEMBL)
msepqnsseaessssnsslsptnahqdskkikrmrdqsskhpvyrgvrmrnwgkwvseireprkksriwlgtfpTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQmdkfdsssssSLSSLVSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLpessvfsstnfglgegllwds
Low Complexity Region (SEG)
MsepqnsseaessssnsslsPTNAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQaaaakaaQMDKFDsssssslsslvsAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWDS
Disordered region (IsUnstruct)
******************************************VYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNF*********************************************************************Y**SELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLW**
Disordered Region (DISOPRED)
********************************************RGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRP******DVQAAAAK*************************************************ELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWDS
Disordered Region (DISEMBL)
*****************************************PVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLA****************************************LSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWDS
Disordered Region (DISPRO)
***************************************KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQM****************************EIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEPQNSSEAESSSSNSSLSPTNAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSSSSSSLSSLVSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q9LYD3	236	Dehydration-responsive el	yes	no	0.894	0.864	0.649	2e-65
Q39127	218	Ethylene-responsive trans	no	no	0.828	0.866	0.596	2e-54
Q9M080	221	Ethylene-responsive trans	no	no	0.767	0.791	0.525	2e-47
Q9LU18	236	Ethylene-responsive trans	no	no	0.723	0.699	0.5	5e-38
Q52QU1	225	Ethylene-responsive trans	no	no	0.75	0.76	0.483	1e-37
Q8LBQ7	295	Ethylene-responsive trans	no	no	0.495	0.383	0.634	6e-37
O80654	244	Ethylene-responsive trans	no	no	0.662	0.618	0.563	2e-34
Q9SUK8	179	Ethylene-responsive trans	no	no	0.539	0.687	0.653	2e-33
Q9M210	256	Ethylene-responsive trans	no	no	0.350	0.312	0.777	5e-32
Q9ZQP3	194	Ethylene-responsive trans	no	no	0.350	0.412	0.8	7e-32

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/228 (64%), Positives = 162/228 (71%), Gaps = 24/228 (10%)

Query: 12  SSSSNSSLSPTNAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG 71
           +S S+S    + A Q  KK KR RD S KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG
Sbjct: 20  NSESDSVSDKSKAEQSEKKTKRGRD-SGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG 78

Query: 72  TFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMD--- 128
           TFPTPEMAARAHDVAALSIKG +AILNFPELADS PRP SL+PRD+Q AA KAA M+   
Sbjct: 79  TFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTT 138

Query: 129 --------KFDSSSSSSLSSLVSAMDLS-TGSEELSEIVELPSLGSSYDYKSSELRNEFV 179
                       SS+SSL SLV  MDLS T SEEL EIVELPSLG+SYD  S+ L NEFV
Sbjct: 139 SFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFV 198

Query: 180 FVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWD 227
           F DSVD  +Y PPW QS E ++Y  G+ P        NF  G GL WD
Sbjct: 199 FYDSVDYCLYPPPWGQSSE-DNYGHGISP--------NF--GHGLSWD 235

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/208 (59%), Positives = 140/208 (67%), Gaps = 19/208 (9%)

Query: 7   SSEAESSSSNSSLSPTNAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKS 66
           +SE+  S   S++   N  +  K +K     S KHPVYRGVR RNWGKWVSEIREPRKKS
Sbjct: 3   ASESTKSWEASAVRQENEEEKKKPVK----DSGKHPVYRGVRKRNWGKWVSEIREPRKKS 58

Query: 67  RIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQ 126
           RIWLGTFP+PEMAARAHDVAALSIKG SAILNFP+LA S PRP+SL+PRD+Q AA KAA 
Sbjct: 59  RIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAH 118

Query: 127 M----------DKFDSSSSSSLSSLVSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRN 176
           M              SSS SS S        +TGSEEL EIVELPSLGSSYD   ++L N
Sbjct: 119 METSQSFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYD-GLTQLGN 177

Query: 177 EFVFVDSVDGWMYTPPWFQSVEVEDYQF 204
           EF+F DS D W Y P W +     DYQ 
Sbjct: 178 EFIFSDSADLWPYPPQWSEG----DYQM 201

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 138/213 (64%), Gaps = 38/213 (17%)

Query: 35  RDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNS 94
           + +++K PVYRGVRMR+WGKWVSEIREPRKKSRIWLGTFPT EMA RAHDVAA+SIKG S
Sbjct: 10  KKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTS 69

Query: 95  AILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSS-----------------SSSS 137
           AILNFPEL+  LPRP SL+PRDV+AAA KAA MD FD++                 S SS
Sbjct: 70  AILNFPELSKLLPRPVSLSPRDVRAAATKAALMD-FDTTAFRSDTETSETTTSNKMSESS 128

Query: 138 LSS-----------LVSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDG 186
            S+            V++++ ST S++L EIV+LPSLG+S +       NEFV  DS++ 
Sbjct: 129 ESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNES-----NEFVIFDSLED 183

Query: 187 WMYTPPWFQSVEVEDYQFG----VLPESSVFSS 215
            +Y P W    E E + +      L  SSVF S
Sbjct: 184 LVYMPRWLSGTEEEVFTYNNNDSSLNYSSVFES 216

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score =  157 bits (397), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 13/178 (7%)

Query: 40  KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNF 99
           +HPVYRGVRMR+WGKWVSEIR+PRKK+RIWLGTF T +MAARAHDVAAL+IKG+SA+LNF
Sbjct: 57  QHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNF 116

Query: 100 PELADSLPRPNSLAPRDVQA---------AAAKAAQMDKFDSSSSSSLSSLVSAMDLSTG 150
           PELA   PRP S +P D+Q             K  + D+   +  SS SS V+A   S  
Sbjct: 117 PELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDEAPEAPPSSESSYVAAE--SED 174

Query: 151 SEELSEIVELPSL-GSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVL 207
            E L +IVELP++   SYD +S   R +  + +  D W+Y P      E+ ++ F  L
Sbjct: 175 EERLEKIVELPNIEEGSYD-ESVTSRADLAYSEPFDCWVYPPVMDFYEEISEFNFVEL 231

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QU1|ERF42_ARATH Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/213 (48%), Positives = 127/213 (59%), Gaps = 42/213 (19%)

Query: 43  VYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL 102
           VYRG RMR+WGKWVSEIREPRKKSRIWLGTFPT EMAARAHDVAALSIKG+SAILNFPEL
Sbjct: 25  VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPEL 84

Query: 103 ADSLPRPNSLAPRDVQAAAAKAAQMDKFDS------SSSSSLSSLVSAMDLSTG------ 150
           AD LPRP SL+ +D+QAAAA+AA MD F +        S+ L +      +         
Sbjct: 85  ADFLPRPVSLSQQDIQAAAAEAALMD-FKTVPFHLQDDSTPLQTRCDTEKIEKWSSSSSS 143

Query: 151 ----------------SEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWF 194
                           S EL +IVELPSL ++  Y  +         DS++G +  PPW 
Sbjct: 144 ASSSSSSSSSSSSSMLSGELGDIVELPSLENNVKYDCA-------LYDSLEGLVSMPPWL 196

Query: 195 QSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWD 227
            + E  D+++G   + SV    +  L E  LW+
Sbjct: 197 DATE-NDFRYG---DDSVL--LDPCLKESFLWN 223

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  154 bits (388), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 90/115 (78%), Gaps = 2/115 (1%)

Query: 32  KRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 91
           +R  +   KHP YRGVRMR+WGKWVSEIREPRKKSRIWLGT+PT EMAARAHDVAAL+IK
Sbjct: 88  RRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIK 147

Query: 92  GNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQ--MDKFDSSSSSSLSSLVSA 144
           G +A LNFP+LA  LPRP + +P+D+QAAA+ AA    D  +  S+S ++ +V A
Sbjct: 148 GTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEIVEA 202

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80654|ERF37_ARATH Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 122/190 (64%), Gaps = 39/190 (20%)

Query: 32  KRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 91
           KR+R      P YRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHD AAL+IK
Sbjct: 35  KRVRSD----PGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIK 90

Query: 92  GNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSSSSSSLSSLVSAM------ 145
           G SA+LNFPELA  LPRP S +PRDVQAAAA AA MD   SSSS  +S   + +      
Sbjct: 91  GTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVIAPAETQ 150

Query: 146 -------------------DLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDG 186
                              + ++ +EELSEIVELPSL +SYD    E  +EFV+VDS   
Sbjct: 151 LSSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETSYD----ESLSEFVYVDSA-- 204

Query: 187 WMYTP--PWF 194
             Y P  PW+
Sbjct: 205 --YPPSSPWY 212

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/124 (65%), Positives = 90/124 (72%), Gaps = 1/124 (0%)

Query: 5   QNSSEAESSSSNSSLSPTNAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRK 64
           Q+SS  ES  +  S  P    + S K K  +   SK P +RGVRMR WGKWVSEIREPRK
Sbjct: 2   QDSSSHESQRNLRSPVPEKTGK-SSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRK 60

Query: 65  KSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKA 124
           KSRIWLGTF TPEMAARAHDVAAL+IKG SA LNFPELA  LPRP S  P+D+Q AAA A
Sbjct: 61  KSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAA 120

Query: 125 AQMD 128
           A +D
Sbjct: 121 AAVD 124

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M210|ERF35_ARATH Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 72/81 (88%), Gaps = 1/81 (1%)

Query: 39  SKHPV-YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAIL 97
           +K+P  YRGVRMR+WGKWVSEIREPRKKSRIWLGT+PT EMAARAHDVAAL+IKGNS  L
Sbjct: 65  NKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFL 124

Query: 98  NFPELADSLPRPNSLAPRDVQ 118
           NFPEL+  LPRP S +P+D+Q
Sbjct: 125 NFPELSGLLPRPVSCSPKDIQ 145

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP3|ERF38_ARATH Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1

 Score =  137 bits (345), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 69/80 (86%)

Query: 39  SKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILN 98
           SKHP +RGVRMR WGKWVSEIREP+KKSRIWLGTF T EMAARAHDVAAL+IKG SA LN
Sbjct: 40  SKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLN 99

Query: 99  FPELADSLPRPNSLAPRDVQ 118
           FPELA  LPRP S  P+D+Q
Sbjct: 100 FPELAYHLPRPASADPKDIQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
255550908	270	Transcriptional factor TINY, putative [R	0.872	0.737	0.642	8e-69
292668975	252	AP2 domain class transcription factor [M	0.802	0.726	0.730	1e-65
297811277	236	hypothetical protein ARALYDRAFT_487996 [	0.894	0.864	0.644	3e-65
15239113	236	dehydration-responsive element-binding p	0.894	0.864	0.649	1e-63
224142968	250	AP2/ERF domain-containing transcription	0.728	0.664	0.759	2e-62
225429938	241	PREDICTED: dehydration-responsive elemen	0.850	0.804	0.735	5e-61
358248846	188	dehydration-responsive element-binding p	0.793	0.962	0.673	7e-61
224092288	257	AP2/ERF domain-containing transcription	0.728	0.645	0.756	3e-58
359807173	194	dehydration-responsive element-binding p	0.732	0.860	0.687	9e-58
255645327	194	unknown [Glycine max]	0.732	0.860	0.682	7e-57

>gi|255550908|ref|XP_002516502.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223544322|gb|EEF45843.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 158/246 (64%), Positives = 176/246 (71%), Gaps = 47/246 (19%)

Query: 20  SPTNAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMA 79
           SPTN     KKIKR+RD ++KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMA
Sbjct: 35  SPTN-----KKIKRIRD-TNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMA 88

Query: 80  ARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSS------ 133
           ARAHDVAALSIKGNSAILNFPELADSLPRP SLAPRDVQ AAAKAAQMD FD        
Sbjct: 89  ARAHDVAALSIKGNSAILNFPELADSLPRPASLAPRDVQIAAAKAAQMDTFDKKITDSTA 148

Query: 134 -------------------SSSSLSSLVSAMDLSTGS--EELSEIVELPSLGSSYDYKSS 172
                              S S LSSLVSAMDLST    EELSEIVELPSLG+SY+  SS
Sbjct: 149 ATPMTATTTTSSSSLSLSSSDSCLSSLVSAMDLSTTGPEEELSEIVELPSLGTSYE--SS 206

Query: 173 ELRNEFVFVDSVDGWMYTPPWFQSVEV-------EDYQF---GVLPESSVFSSTNFGLGE 222
           ELR++FV+VDSVDGW+Y PPW +   V       +D      G++P  S  SS++F  G+
Sbjct: 207 ELRSDFVYVDSVDGWVYPPPWLEESHVGGGGCLFDDLTVAIEGLMPNLSTASSSSF--GQ 264

Query: 223 GLLWDS 228
           G  W++
Sbjct: 265 GWFWNN 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668975|gb|ADE41142.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/208 (73%), Positives = 166/208 (79%), Gaps = 25/208 (12%)

Query: 32  KRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 91
           KR+RD SSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK
Sbjct: 55  KRVRD-SSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 113

Query: 92  GNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDS-----------SSSSSLSS 140
           GNSAILNFPEL++SLPRP SLAPRDVQAAA KAAQM +FDS           SSSSSLSS
Sbjct: 114 GNSAILNFPELSNSLPRPVSLAPRDVQAAATKAAQMHQFDSIRSMSPSILSSSSSSSLSS 173

Query: 141 LVSAMD-LSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEV 199
           LVSA+D LST S+ELSEIVELPSL     Y+S+ELR+EFVFV+S D W+Y PPW Q   V
Sbjct: 174 LVSAIDNLSTESDELSEIVELPSLS----YESTELRSEFVFVESEDQWVYPPPWLQ--RV 227

Query: 200 EDYQFGVLPESSVFSSTNFGLGEGLLWD 227
           E+++ G L      SS  F   EGLLWD
Sbjct: 228 EEFECGEL---GAASSVGF---EGLLWD 249

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811277|ref|XP_002873522.1| hypothetical protein ARALYDRAFT_487996 [Arabidopsis lyrata subsp. lyrata] gi|297319359|gb|EFH49781.1| hypothetical protein ARALYDRAFT_487996 [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 147/228 (64%), Positives = 165/228 (72%), Gaps = 24/228 (10%)

Query: 12  SSSSNSSLSPTNAHQ-DSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWL 70
           +S S+S    + A Q ++KK KR+ D S KHPVYRGVRMRNWGKWVSEIREPRKKSRIWL
Sbjct: 20  NSESDSVSQKSKAEQSENKKTKRVID-SGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWL 78

Query: 71  GTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMD-- 128
           GTFPTPEMAARAHDVAALSIKG SAILNFPELADS PRP SL+PRD+Q AA KAA M+  
Sbjct: 79  GTFPTPEMAARAHDVAALSIKGTSAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPT 138

Query: 129 --------KFDSSSSSSLSSLVSAMDLS-TGSEELSEIVELPSLGSSYDYKSSELRNEFV 179
                      SSS+SSL SLV  MDLS T SEEL EIVELPSLG+SYD+ S+ L NEFV
Sbjct: 139 TSFSSSTSSSSSSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDFDSANLGNEFV 198

Query: 180 FVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWD 227
           F DSVD  +Y PPW QS E ++Y +G+ P            G GL WD
Sbjct: 199 FSDSVDYCLYPPPWGQSSE-DNYGYGISPY----------FGHGLSWD 235

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239113|ref|NP_196720.1| dehydration-responsive element-binding protein 3 [Arabidopsis thaliana] gi|75264381|sp|Q9LYD3.1|DREB3_ARATH RecName: Full=Dehydration-responsive element-binding protein 3; AltName: Full=Protein TINY 2 gi|7573416|emb|CAB87719.1| transcription factor like protein [Arabidopsis thaliana] gi|48479294|gb|AAT44918.1| putative AP2/EREBP transcription factor [Arabidopsis thaliana] gi|61104875|gb|AAX38232.1| DREB3 [Arabidopsis thaliana] gi|332004315|gb|AED91698.1| dehydration-responsive element-binding protein 3 [Arabidopsis thaliana]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/228 (64%), Positives = 162/228 (71%), Gaps = 24/228 (10%)

Query: 12  SSSSNSSLSPTNAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG 71
           +S S+S    + A Q  KK KR RD S KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG
Sbjct: 20  NSESDSVSDKSKAEQSEKKTKRGRD-SGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG 78

Query: 72  TFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMD--- 128
           TFPTPEMAARAHDVAALSIKG +AILNFPELADS PRP SL+PRD+Q AA KAA M+   
Sbjct: 79  TFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTT 138

Query: 129 --------KFDSSSSSSLSSLVSAMDLS-TGSEELSEIVELPSLGSSYDYKSSELRNEFV 179
                       SS+SSL SLV  MDLS T SEEL EIVELPSLG+SYD  S+ L NEFV
Sbjct: 139 SFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFV 198

Query: 180 FVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWD 227
           F DSVD  +Y PPW QS E ++Y  G+ P        NF  G GL WD
Sbjct: 199 FYDSVDYCLYPPPWGQSSE-DNYGHGISP--------NF--GHGLSWD 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142968|ref|XP_002324799.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372075|gb|ABQ62969.1| TINY-like protein [Populus trichocarpa] gi|222866233|gb|EEF03364.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/183 (75%), Positives = 151/183 (82%), Gaps = 17/183 (9%)

Query: 28  SKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAA 87
           SKKIKR+RD S+KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAA
Sbjct: 46  SKKIKRIRD-SNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAA 104

Query: 88  LSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSS------------SS 135
           LSIKGN AILNFPELA+ LPRP SLAPRDVQAAAAKAAQMD+FD              S+
Sbjct: 105 LSIKGNPAILNFPELANYLPRPASLAPRDVQAAAAKAAQMDQFDQKSETTTTTSPSSSST 164

Query: 136 SSLSSLVSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQ 195
           SSL+SLVS MDLS+  EEL EIVELPSL +SYD    EL N+FV+ DS+D WMY PPW Q
Sbjct: 165 SSLTSLVSLMDLSSQEEELCEIVELPSLETSYD----ELSNDFVYFDSIDEWMYPPPWMQ 220

Query: 196 SVE 198
           S+E
Sbjct: 221 SME 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429938|ref|XP_002283864.1| PREDICTED: dehydration-responsive element-binding protein 3-like [Vitis vinifera]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 153/208 (73%), Positives = 170/208 (81%), Gaps = 14/208 (6%)

Query: 27  DSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVA 86
           +SKK+KR+RD SSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVA
Sbjct: 41  ESKKMKRIRD-SSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVA 99

Query: 87  ALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFD----SSSSSSLSSLV 142
           ALSIKGNSAILNFP+LA SLPRP SLAPRDVQAAAAKAA MDKFD    SSSSSSLSSLV
Sbjct: 100 ALSIKGNSAILNFPQLAASLPRPVSLAPRDVQAAAAKAAAMDKFDSPSSSSSSSSLSSLV 159

Query: 143 SAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDY 202
           S++DLST S+ELSEIVELP+L  S+D  S E + +FVF DS DGW+Y PPW QSVE   Y
Sbjct: 160 SSIDLSTASDELSEIVELPNLDPSFD--SPESKTDFVFDDSADGWLYPPPWLQSVEDCGY 217

Query: 203 --QFGVLPESSVFSSTNFGLGEGLLWDS 228
             +  ++PES +      G  E  LWD+
Sbjct: 218 FSEQLLVPESLI-----PGSFEAFLWDN 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248846|ref|NP_001239694.1| dehydration-responsive element-binding protein 3-like [Glycine max] gi|212717190|gb|ACJ37436.1| AP2 domain-containing transcription factor 2 [Glycine max]

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 156/208 (75%), Gaps = 27/208 (12%)

Query: 22  TNAHQDSKKIKRMRD--QSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMA 79
           T    ++KKIKR+R    SSKHP+YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMA
Sbjct: 5   TETEPETKKIKRIRGGGDSSKHPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMA 64

Query: 80  ARAHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSSSSSSLS 139
           ARAHDVAALSIKG +AILNFP LA+SLPRP SLAPRDVQAAAAKAA MD       SSLS
Sbjct: 65  ARAHDVAALSIKGPAAILNFPHLANSLPRPASLAPRDVQAAAAKAAHMD------PSSLS 118

Query: 140 SLVSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEV 199
           SLVSAMDLS+ S+ELS+I+ELPSL S+ D  S +L+ EFVFVDS+D WMY PP       
Sbjct: 119 SLVSAMDLSSASDELSQIIELPSLEST-DDGSVDLKKEFVFVDSLDAWMYQPP------- 170

Query: 200 EDYQFGVLPESSVFSSTNFGLGEGLLWD 227
               FG   E      T F   EGL+W+
Sbjct: 171 ----FGFDTE----QDTGF---EGLMWN 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092288|ref|XP_002309544.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372073|gb|ABQ62968.1| TINY-like protein [Populus trichocarpa] gi|222855520|gb|EEE93067.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/185 (75%), Positives = 148/185 (80%), Gaps = 19/185 (10%)

Query: 28  SKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAA 87
            KKI R+RD SSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPE AARAHD AA
Sbjct: 46  CKKITRIRD-SSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEKAARAHDAAA 104

Query: 88  LSIKGNSAILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSS-------------- 133
           LSIKGNSAILNFPELA+SLPRP SLAPRDVQAAAAKAAQMD FD                
Sbjct: 105 LSIKGNSAILNFPELANSLPRPASLAPRDVQAAAAKAAQMDNFDQKSETTTTTTASSSSS 164

Query: 134 SSSSLSSLVSAMDLSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPW 193
            +SSL+SLVS MDLS+  EELSEIVELPSL +SYD    EL N+FV+ DSV GWMY PPW
Sbjct: 165 CTSSLTSLVSLMDLSSQDEELSEIVELPSLETSYD----ELNNDFVYSDSVYGWMYPPPW 220

Query: 194 FQSVE 198
            QSVE
Sbjct: 221 MQSVE 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807173|ref|NP_001241356.1| dehydration-responsive element-binding protein 3-like [Glycine max] gi|212717188|gb|ACJ37435.1| AP2 domain-containing transcription factor 1 [Glycine max]

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 145/192 (75%), Gaps = 25/192 (13%)

Query: 36  DQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSA 95
           D S+KHP+YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG++A
Sbjct: 27  DSSNKHPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAA 86

Query: 96  ILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSSSSSSLSSLVSAMDLSTGSEELS 155
           ILNFP  A+SLPRP SLAPRDVQAAAAKAA MD       SSLSSLVSAMDLS+ S+ELS
Sbjct: 87  ILNFPHFANSLPRPASLAPRDVQAAAAKAAHMDP------SSLSSLVSAMDLSSASDELS 140

Query: 156 EIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSS 215
           +I+ELPSL S+ D  S  L  EFVFVDS+D WMY PP           FG   E      
Sbjct: 141 QIIELPSLEST-DDGSVVLEKEFVFVDSLDAWMYQPP-----------FGFDTE----QD 184

Query: 216 TNFGLGEGLLWD 227
           T F   EGL+W+
Sbjct: 185 TGF---EGLMWN 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645327|gb|ACU23160.1| unknown [Glycine max]

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 144/192 (75%), Gaps = 25/192 (13%)

Query: 36  DQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSA 95
           D S+KHP+YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKG++A
Sbjct: 27  DSSNKHPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAA 86

Query: 96  ILNFPELADSLPRPNSLAPRDVQAAAAKAAQMDKFDSSSSSSLSSLVSAMDLSTGSEELS 155
           ILNFP  A+SLPRP SLAPRDVQAAAAKAA MD       SSLSSLVSA DLS+ S+ELS
Sbjct: 87  ILNFPHFANSLPRPASLAPRDVQAAAAKAAHMDP------SSLSSLVSAKDLSSASDELS 140

Query: 156 EIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWFQSVEVEDYQFGVLPESSVFSS 215
           +I+ELPSL S+ D  S  L  EFVFVDS+D WMY PP           FG   E      
Sbjct: 141 QIIELPSLEST-DDGSVVLEKEFVFVDSLDAWMYQPP-----------FGFDTE----QD 184

Query: 216 TNFGLGEGLLWD 227
           T F   EGL+W+
Sbjct: 185 TGF---EGLMWN 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.850	0.822	0.610	9.3e-59
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.776	0.811	0.581	6.5e-51
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.425	0.431	0.711	2.5e-41
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.754	0.728	0.468	1.3e-36
TAIR|locus:2134128	221	AT4G32800 [Arabidopsis thalian	0.679	0.701	0.540	2.4e-35
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.442	0.413	0.679	6.7e-33
TAIR|locus:2129111	179	AT4G16750 [Arabidopsis thalian	0.442	0.564	0.683	4.7e-32
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.381	0.294	0.724	1.3e-31
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.429	0.382	0.656	4.2e-31
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.390	0.458	0.723	1.1e-30

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 133/218 (61%), Positives = 145/218 (66%)

Query:    22 TNAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAAR 81
             + A Q  KK KR RD S KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAAR
Sbjct:    30 SKAEQSEKKTKRGRD-SGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAAR 88

Query:    82 AHDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXXQMD---KFDXXXXXXX 138
             AHDVAALSIKG +AILNFPELADS PRP SL+PRD+Q        M+    F        
Sbjct:    89 AHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTSFSSSTSSSS 148

Query:   139 XXXXXA--------MDLS-TGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMY 189
                  +        MDLS T SEEL EIVELPSLG+SYD  S+ L NEFVF DSVD  +Y
Sbjct:   149 SLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVFYDSVDYCLY 208

Query:   190 TPPWFQSVEVEDYQFGVLPESSVFSSTNFGLGEGLLWD 227
              PPW QS E ++Y  G+ P        NFG   GL WD
Sbjct:   209 PPPWGQSSE-DNYGHGISP--------NFG--HGLSWD 235

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 114/196 (58%), Positives = 133/196 (67%)

Query:    25 HQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHD 84
             +++ KK K ++D S KHPVYRGVR RNWGKWVSEIREPRKKSRIWLGTFP+PEMAARAHD
Sbjct:    19 NEEEKK-KPVKD-SGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHD 76

Query:    85 VAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXXQMD---KFDXXXXXXXXXX 141
             VAALSIKG SAILNFP+LA S PRP+SL+PRD+Q        M+    F           
Sbjct:    77 VAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSSLTFSSS 136

Query:   142 XXAMDL-------STGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVDGWMYTPPWF 194
               +  L       +TGSEEL EIVELPSLGSSYD   ++L NEF+F DS D W Y P W 
Sbjct:   137 QSSSSLESLVSSSATGSEELGEIVELPSLGSSYD-GLTQLGNEFIFSDSADLWPYPPQWS 195

Query:   195 QSVEVEDYQFGVLPES 210
             +     DYQ  ++P S
Sbjct:   196 EG----DYQ--MIPAS 205

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
 Identities = 69/97 (71%), Positives = 80/97 (82%)

Query:    32 KRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 91
             K+ ++++ +  VYRG RMR+WGKWVSEIREPRKKSRIWLGTFPT EMAARAHDVAALSIK
Sbjct:    14 KKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIK 73

Query:    92 GNSAILNFPELADSLPRPNSLAPRDVQXXXXXXXQMD 128
             G+SAILNFPELAD LPRP SL+ +D+Q        MD
Sbjct:    74 GSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMD 110

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 88/188 (46%), Positives = 111/188 (59%)

Query:    32 KRMRDQSS-------KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHD 84
             KR RD SS       +HPVYRGVRMR+WGKWVSEIR+PRKK+RIWLGTF T +MAARAHD
Sbjct:    42 KRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHD 101

Query:    85 VAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXXQM-------DKFDXXXXXX 137
             VAAL+IKG+SA+LNFPELA   PRP S +P D+Q        M       +K +      
Sbjct:   102 VAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDEAPEAPP 161

Query:   138 XXXXXXAMDLSTGSEELSEIVELPSLGS-SYDYKSSELRNEFVFVDSVDGWMYTPPWFQS 196
                       S   E L +IVELP++   SYD +S   R +  + +  D W+Y P     
Sbjct:   162 SSESSYVAAESEDEERLEKIVELPNIEEGSYD-ESVTSRADLAYSEPFDCWVYPPVMDFY 220

Query:   197 VEVEDYQF 204
              E+ ++ F
Sbjct:   221 EEISEFNF 228

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2134128 AT4G32800 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 86/159 (54%), Positives = 98/159 (61%)

Query:    27 DSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVA 86
             DS   K  ++ ++K PVYRGVRMR+WGKWVSEIREPRKKSRIWLGTFPT EMA RAHDVA
Sbjct:     3 DSSSDKEKKE-NNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVA 61

Query:    87 ALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXXQMDKFDXXXXXXXXXXXXAMD 146
             A+SIKG SAILNFPEL+  LPRP SL+PRDV+        MD FD               
Sbjct:    62 AMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMD-FDTTAFRSDTETSETTT 120

Query:   147 LSTGSEELSEIVELPSLGSSYDYKSSELRNEFVFVDSVD 185
              +  SE  SE  E  S  SS  + S     E    D +D
Sbjct:   121 SNKMSES-SESNETVSFSSS-SWSSVTSIEESTVSDDLD 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 72/106 (67%), Positives = 80/106 (75%)

Query:    23 NAHQDSKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARA 82
             ++H+ + K KR+R      P YRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARA
Sbjct:    27 DSHRTNTK-KRVRSD----PGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARA 81

Query:    83 HDVAALSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXXQMD 128
             HD AAL+IKG SA+LNFPELA  LPRP S +PRDVQ        MD
Sbjct:    82 HDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMD 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2129111 AT4G16750 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 69/101 (68%), Positives = 75/101 (74%)

Query:    28 SKKIKRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAA 87
             S K K  +   SK P +RGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAA
Sbjct:    24 SSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAA 83

Query:    88 LSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXXQMD 128
             L+IKG SA LNFPELA  LPRP S  P+D+Q        +D
Sbjct:    84 LAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVD 124

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/87 (72%), Positives = 74/87 (85%)

Query:    32 KRMRDQSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIK 91
             +R  +   KHP YRGVRMR+WGKWVSEIREPRKKSRIWLGT+PT EMAARAHDVAAL+IK
Sbjct:    88 RRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIK 147

Query:    92 GNSAILNFPELADSLPRPNSLAPRDVQ 118
             G +A LNFP+LA  LPRP + +P+D+Q
Sbjct:   148 GTTAYLNFPKLAGELPRPVTNSPKDIQ 174

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 65/99 (65%), Positives = 76/99 (76%)

Query:    29 KKIKRMRDQSSKHPV-YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAA 87
             K+ K      +K+P  YRGVRMR+WGKWVSEIREPRKKSRIWLGT+PT EMAARAHDVAA
Sbjct:    55 KRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAA 114

Query:    88 LSIKGNSAILNFPELADSLPRPNSLAPRDVQXXXXXXXQ 126
             L+IKGNS  LNFPEL+  LPRP S +P+D+Q       +
Sbjct:   115 LAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAAE 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 68/94 (72%), Positives = 74/94 (78%)

Query:    30 KIKRMRDQS-----SKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHD 84
             K KR +D       SKHP +RGVRMR WGKWVSEIREP+KKSRIWLGTF T EMAARAHD
Sbjct:    26 KKKRAKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHD 85

Query:    85 VAALSIKGNSAILNFPELADSLPRPNSLAPRDVQ 118
             VAAL+IKG SA LNFPELA  LPRP S  P+D+Q
Sbjct:    86 VAALAIKGGSAHLNFPELAYHLPRPASADPKDIQ 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYD3	DREB3_ARATH	No assigned EC number	0.6491	0.8947	0.8644	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	5e-34
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	7e-32
pfam00847	53	pfam00847, AP2, AP2 domain	2e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (292), Expect = 5e-34
 Identities = 38/59 (64%), Positives = 43/59 (72%)

Query: 44  YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL 102
           YRGVR R WGKWV+EIR+P K  R+WLGTF T E AARA+D AA   +G SA LNFP  
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  110 bits (277), Expect = 7e-32
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query: 44  YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL 102
           YRGVR R WGKWV+EIR+P    RIWLGTF T E AARA+D AAL ++G+SA+LNFP+ 
Sbjct: 3   YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 65.0 bits (159), Expect = 2e-14
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 42 PVYRGVRMR-NWGKWVSEIREP--RKKSRIWLGTFPTPEMAARAHDVAALSIKG 92
            Y+GVR    WG+WV+EIR+P  +KK R  LGTF T E AARA   A L ++G
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
PHA00280	121	putative NHN endonuclease	99.49
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.11

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=5.1e-21  Score=135.86  Aligned_cols=61  Identities=64%  Similarity=1.109  Sum_probs=57.4

Q ss_pred             CceeEEEECCCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027107           42 PVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL  102 (228)
Q Consensus        42 s~yRGVr~r~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~G~~A~lNFp~~  102 (228)
                      |+||||+++++|||+|+|+.+..++++|||+|+|+||||+|||.|+++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            5799999888899999999966699999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=3.2e-20  Score=133.36  Aligned_cols=62  Identities=61%  Similarity=1.024  Sum_probs=58.8

Q ss_pred             ceeEEEECCCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 027107           43 VYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAD  104 (228)
Q Consensus        43 ~yRGVr~r~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~G~~A~lNFp~~~~  104 (228)
                      +|+||+++++|||+|+|+.|.+++++|||+|+|+||||+|||.|+++++|..+.+|||...+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            49999888889999999999999999999999999999999999999999999999998754

>PHA00280 putative NHN endonuclease

Probab=99.49  E-value=5.6e-14  Score=113.94  Aligned_cols=67  Identities=10%  Similarity=0.098  Sum_probs=56.2

Q ss_pred             cchhhhhhcccCCCCCCCceeEEEEC-CCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHHHHHHhcCCCCC
Q 027107           25 HQDSKKIKRMRDQSSKHPVYRGVRMR-NWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAI   96 (228)
Q Consensus        25 ~~~~~k~kr~r~~~~~~s~yRGVr~r-~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~Aa~~l~G~~A~   96 (228)
                      ..++.++++++  ++++++|+||++. ..|||+|+|+.  .+|+++||.|+++|+|+.||+ ++.+++|.+|.
T Consensus        52 ~~eN~~N~~~~--~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         52 PKENSWNMKTP--KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHHHhcccCCC--CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            34555555444  4889999999754 67999999999  999999999999999999997 77889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.11  E-value=1.2e-10  Score=80.55  Aligned_cols=52  Identities=31%  Similarity=0.475  Sum_probs=44.9

Q ss_pred             CceeEEEEC-CCCcEEEEEecCCC---CeEEEecCCCCHHHHHHHHHHHHHHhcCC
Q 027107           42 PVYRGVRMR-NWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKGN   93 (228)
Q Consensus        42 s~yRGVr~r-~~GKW~AeIr~p~~---kkriwLGtF~T~EeAArAYD~Aa~~l~G~   93 (228)
                      |+|+||+++ ..++|+|+|+++..   +++++||.|++++||++|++.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            679999765 67999999999521   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		4e-13
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		4e-13

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 44  YRGVRMRNWGKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFP 100
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 44  YRGVRMRNWGKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFP 100
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  106 bits (266), Expect = 2e-30
 Identities = 34/59 (57%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 44  YRGVRMRNWGKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPE 101
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 44/289 (15%), Positives = 82/289 (28%), Gaps = 118/289 (40%)

Query: 39  SKHPVYRG---VRMRNW------------------GKWV-------SEIREPRKKSRI-W 69
           +K+ V R    +++R                    GK         S   + +   +I W
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 70  L--GTFPTPE----------------MAARAHDVAALSIKGNSAILNFPELADSLPRPNS 111
           L      +PE                  +R+   + + ++ +S       L  S P  N 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 112 L-APRDVQAAAAKAAQMDKFD-------SSSSSSLSSLVSA-------MDLSTGSEELSE 156
           L    +VQ A A     + F+       ++    ++  +SA       +D  + +    E
Sbjct: 247 LLVLLNVQNAKA----WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 157 IVELPSLGSSYDYKSSELRNEFVFV-------------DSVDGWMYTPPWFQ-------- 195
           +  L  L    D +  +L  E +               D +  W     W          
Sbjct: 303 VKSL--LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---WKHVNCDKLTT 357

Query: 196 ----SVEVED-------YQ-FGVLPESS-----VFSSTNFGLGEGLLWD 227
               S+ V +       +    V P S+     + S         L+W 
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS---------LIWF 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.74
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	80.89

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=1.1e-25  Score=161.82  Aligned_cols=60  Identities=57%  Similarity=0.967  Sum_probs=57.1

Q ss_pred             ceeEEEECCCCcEEEEEecCCC-CeEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027107           43 VYRGVRMRNWGKWVSEIREPRK-KSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL  102 (228)
Q Consensus        43 ~yRGVr~r~~GKW~AeIr~p~~-kkriwLGtF~T~EeAArAYD~Aa~~l~G~~A~lNFp~~  102 (228)
                      +||||+++++|||+|+|+.|.+ +++||||+|+|+||||+|||+|+++++|..+.+|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            5999998899999999999974 79999999999999999999999999999999999986

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.74  E-value=0.24  Score=36.69  Aligned_cols=29  Identities=24%  Similarity=0.329  Sum_probs=21.6

Q ss_pred             CCCCCceeEEEEC-CCCcEEEEEecCCCCeEE
Q 027107           38 SSKHPVYRGVRMR-NWGKWVSEIREPRKKSRI   68 (228)
Q Consensus        38 ~~~~s~yRGVr~r-~~GKW~AeIr~p~~kkri   68 (228)
                      .+.+|+|+||.+. +.+.|+|+-.+  ++++.
T Consensus         2 ~~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            2 SHMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             --CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            3567899999555 67999999998  56554

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=80.89  E-value=0.28  Score=39.91  Aligned_cols=39  Identities=8%  Similarity=0.022  Sum_probs=29.4

Q ss_pred             eeEEEECCCCcEEEEEecCCCCeEEEecCCCCHHHHHHHHHH
Q 027107           44 YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDV   85 (228)
Q Consensus        44 yRGVr~r~~GKW~AeIr~p~~kkriwLGtF~T~EeAArAYD~   85 (228)
                      ++||.....++|.+.|..  . +.++||.|.|.+|||++|..
T Consensus       109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv  147 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL  147 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred             eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence            456633333568898888  5 67789999999999999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-32

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  109 bits (274), Expect = 4e-32
 Identities = 34/59 (57%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 44  YRGVRMRNWGKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPE 101
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.6e-25  Score=159.76  Aligned_cols=60  Identities=55%  Similarity=0.954  Sum_probs=55.9

Q ss_pred             ceeEEEECCCCcEEEEEecCC-CCeEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027107           43 VYRGVRMRNWGKWVSEIREPR-KKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPEL  102 (228)
Q Consensus        43 ~yRGVr~r~~GKW~AeIr~p~-~kkriwLGtF~T~EeAArAYD~Aa~~l~G~~A~lNFp~~  102 (228)
                      +||||++|++|||+|+|++|. ++++||||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            499999988899999999874 568999999999999999999999999999999999964