Citrus Sinensis ID: 027116

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLINS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccccHHHcccccccEEEccccccccccccHHHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccc
Coil and Loop (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHffngdqhlqnwvddenysdccqWERVECNETIGRVIKLDLAQIRKWESAEWymnaslftpfqqlesldltwNSIAGCvenkgldrlsrlnnlkflhldfnwfnnsifsslgglsslkhLSLFHNrlngsvdikeldslsnleeldmsdnainnpvipkdyrglrklntlhlggteiamidgskvlins
Flexible Loop (DISEMBL)
mcgskrvwVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNleeldmsdnainnpvipkdyrGLRKLNTlhlggteiamidgskvlins
Low Complexity Region (SEG)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIfsslgglsslkhlslfhNRLNGSVDIKeldslsnleeldmsdNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLINS
Disordered region (IsUnstruct)
*****RVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL**********NAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV****
Disordered Region (DISOPRED)
****KRV*VSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG*******
Disordered Region (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLINS
Disordered Region (DISPRO)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL*N*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLINS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q05091	330	Polygalacturonase inhibit	N/A	no	0.736	0.509	0.307	1e-14
Q9M5J9	330	Polygalacturonase inhibit	no	no	0.719	0.496	0.298	2e-11
Q9C9H7	847	Receptor-like protein 12	no	no	0.771	0.207	0.341	9e-11
Q9LRT1	1016	Probably inactive leucine	no	no	0.868	0.194	0.285	3e-09
Q93Y06	669	Probable inactive recepto	no	no	0.662	0.225	0.315	4e-08
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.785	0.162	0.277	4e-08
Q00874	372	DNA-damage-repair/tolerat	no	no	0.675	0.413	0.294	5e-08
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.758	0.165	0.266	5e-08
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.723	0.159	0.302	8e-08
Q9FK10	601	Probable inactive recepto	no	no	0.837	0.317	0.297	1e-07

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 27/195 (13%)

Query: 18  VVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRV-- 75
           V+    S+ C   ++  LLQIK  F     L +W  D   +DCC W  V C+ T  R+  
Sbjct: 18  VLNPALSDLCNPDDKKVLLQIKKAFGDPYVLASWKSD---TDCCDWYCVTCDSTTNRINS 74

Query: 76  -----------IKLDLAQIRKWESAEWYMNASLFTPFQQ-------LESLDLTWNSIAGC 117
                      I   +  +   E+ E++   +L  P Q        L+SL L+W +++G 
Sbjct: 75  LTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSGS 134

Query: 118 VENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS 177
           V     D LS+L NL FL L FN    +I SSL  L +L  L L  N+L G + I     
Sbjct: 135 VP----DFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQF 190

Query: 178 LSNLEELDMSDNAIN 192
           + N+ +L +S N ++
Sbjct: 191 IGNVPDLYLSHNQLS 205

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.
Pyrus communis (taxid: 23211)

>sp|Q9M5J9|PGIP1_ARATH Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 30/194 (15%)

Query: 27  CLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETI--GRVIKLDL--AQ 82
           C + +++ LL+IK   N   HL +W   +  +DCC W  +EC +     RV  L +   Q
Sbjct: 25  CNQNDKNTLLKIKKSLNNPYHLASW---DPQTDCCSWYCLECGDATVNHRVTALTIFSGQ 81

Query: 83  IRKWESAE----WYMNASLF--------------TPFQQLESLDLTWNSIAGCVENKGLD 124
           I     AE     Y+   +F                 + L  L L+W ++ G +     D
Sbjct: 82  ISGQIPAEVGDLPYLETLVFRKLSNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIP----D 137

Query: 125 RLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEEL 184
            +S+L NL+FL L FN  + SI SSL  L  +  L L  N+L GS+          + +L
Sbjct: 138 FISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDL 197

Query: 185 DMSDNAINNPVIPK 198
            +S N ++ P IPK
Sbjct: 198 RLSHNQLSGP-IPK 210

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 98/214 (45%), Gaps = 38/214 (17%)

Query: 1   MCGSKRVWVSE---LIFILLVVKGWWSEG---CLEQERSALLQIKHFF--NGDQHLQN-W 51
           M  S R WV     +IF+ L+V    S     C + +R ALL+ +  F  N   H+ N W
Sbjct: 2   MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query: 52  VDDENYS-DCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLT 110
               N S DCC W  V CN+  G+VI LD+     + +     N+SLF   Q L  LDLT
Sbjct: 62  RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPN--TFLNNYLKTNSSLFK-LQYLRHLDLT 118

Query: 111 WNSIAGCVE----------------NKGLDRLS----RLNNLKFLHLDFNWFNNSIFSSL 150
             ++ G +                 NK +  +      LN L+ L L  N     I SSL
Sbjct: 119 NCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSL 178

Query: 151 GGLSSLKHLSLFHNRLNGSV-----DIKELDSLS 179
           G LS L +L LF NRL G +     D+K+L +LS
Sbjct: 179 GNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLS 212

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 19/217 (8%)

Query: 1   MCGSKRVWVSELIFILLVVKGWWSEG-----CLEQERSALLQIKHFFNGD-QHLQNWVDD 54
           M   +R  +S  +F+ L +      G      L  +   L+  K   N    HL++W +D
Sbjct: 1   MGKQRRTMISFTLFLTLTMMSSLINGDTDSIQLNDDVLGLIVFKSDLNDPFSHLESWTED 60

Query: 55  ENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSI 114
           +N    C W  V+CN    RVI+L L  +    +    +N  +    Q+L+ L L+ N+ 
Sbjct: 61  DNTP--CSWSYVKCNPKTSRVIELSLDGL----ALTGKINRGI-QKLQRLKVLSLSNNNF 113

Query: 115 AGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKE 174
            G +     + LS  N+L+ L L  N  +  I SSLG ++SL+HL L  N  +G++    
Sbjct: 114 TGNI-----NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDL 168

Query: 175 LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
            ++ S+L  L +S N +    IP        LN+L+L
Sbjct: 169 FNNCSSLRYLSLSHNHLEG-QIPSTLFRCSVLNSLNL 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Y06|Y5720_ARATH Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 14/165 (8%)

Query: 28  LEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWE 87
           L  +  ALL  K   + D  L  +   E Y D CQW  V+C +  GR+++L L+ +    
Sbjct: 31  LPSDAVALLSFKSTADLDNKLL-YSLTERY-DYCQWRGVKCAQ--GRIVRLVLSGV---- 82

Query: 88  SAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF 147
               Y +++  +   QL  L L  NS+ G + +     LS L NLK L L  N F+ +  
Sbjct: 83  GLRGYFSSATLSRLDQLRVLSLENNSLFGPIPD-----LSHLVNLKSLFLSRNQFSGAFP 137

Query: 148 SSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAIN 192
            S+  L  L  LS+ HN  +GS+   E+++L  L  L++  N  N
Sbjct: 138 PSILSLHRLMILSISHNNFSGSIP-SEINALDRLTSLNLDFNRFN 181

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 19/198 (9%)

Query: 28  LEQERSALLQIK-HFFNGDQHLQNWVDDENYSDCCQWERVECN--ETIGRVIKLDLAQIR 84
           L  E   LL+IK  F +  Q+L+NW  + N S  C W  V C+   +   V+ L+L+ + 
Sbjct: 27  LNLEGQYLLEIKSKFVDAKQNLRNW--NSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMV 84

Query: 85  KWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN 144
                   +          L+ LDL++N ++G +  +    +   ++L+ L L+ N F+ 
Sbjct: 85  LSGKLSPSIGG-----LVHLKQLDLSYNGLSGKIPKE----IGNCSSLEILKLNNNQFDG 135

Query: 145 SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLR 204
            I   +G L SL++L +++NR++GS+ + E+ +L +L +L    N I+   +P+    L+
Sbjct: 136 EIPVEIGKLVSLENLIIYNNRISGSLPV-EIGNLLSLSQLVTYSNNISG-QLPRSIGNLK 193

Query: 205 KLNTLHLGGTEIAMIDGS 222
           +L +   G     MI GS
Sbjct: 194 RLTSFRAGQN---MISGS 208

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 58  SDCC-QWERVECNETIGRVIKLDLA-----QIRKWESAEWYMNASL---FTPFQQLESLD 108
           +DCC +W  + C+   GRV  + L       I +      YM+ S+         L SL 
Sbjct: 57  TDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLV 116

Query: 109 LT-WNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLN 167
           L  W  I G +       ++ L +L+ L L  N     I + +G LS L  L+L  N+++
Sbjct: 117 LADWKGITGEIP----PCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMS 172

Query: 168 GSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
           G +    L SL  L+ L++++N I   VIP D+  L+ L+ + LG  E+ 
Sbjct: 173 GEIP-ASLTSLIELKHLELTENGITG-VIPADFGSLKMLSRVLLGRNELT 220

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 33/206 (16%)

Query: 2   CGSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFN---GDQHLQNWVDDENYS 58
           C  K   +  L+ I +V+   ++     +E +ALL+ K  F        L +WV+    S
Sbjct: 21  CKEKPRDLQVLLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSS 80

Query: 59  DCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASL----------------FTP-- 100
            C  W  V C  ++G +I+L+L       + E +  +SL                 +P  
Sbjct: 81  FCTSWYGVAC--SLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLW 138

Query: 101 --FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKH 158
             F +LE  DL+ N + G +       L  L+NL  LHL  N  N SI S +G L+ +  
Sbjct: 139 GRFSKLEYFDLSINQLVGEIP----PELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTE 194

Query: 159 LSLFHNRLNGSVDIKELDSLSNLEEL 184
           ++++ N L G +      S  NL +L
Sbjct: 195 IAIYDNLLTGPIP----SSFGNLTKL 216

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 20/185 (10%)

Query: 30  QERSALLQIKHFFNGDQH---LQNWVDDE-NYSDC-CQWERVECNETIGRVIKLDLAQIR 84
           Q+  ALL+ K     D     L +W D+  +++ C   W  + CN   G V  + L  + 
Sbjct: 7   QDIMALLEFKKGIKHDPTGFVLNSWNDESIDFNGCPSSWNGIVCNG--GNVAGVVLDNLG 64

Query: 85  KWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN 144
               A++    SLF+   +L  L ++ NS++G + N     L    +L+FL L  N F++
Sbjct: 65  LTADADF----SLFSNLTKLVKLSMSNNSLSGVLPND----LGSFKSLQFLDLSDNLFSS 116

Query: 145 SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLR 204
           S+   +G   SL++LSL  N  +G +  + +  L +L+ LDMS N+++ P +PK    L 
Sbjct: 117 SLPKEIGRSVSLRNLSLSGNNFSGEIP-ESMGGLISLQSLDMSSNSLSGP-LPKS---LT 171

Query: 205 KLNTL 209
           +LN L
Sbjct: 172 RLNDL 176

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FK10|Y5332_ARATH Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 14/205 (6%)

Query: 12  LIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNET 71
           LI I+++         +++++  LLQ  +  N   H  NW    + S C +W  V CN  
Sbjct: 7   LILIVVIFNVCIEAETIKEDKHTLLQFVNNIN-HSHSLNW--SPSLSICTKWTGVTCNSD 63

Query: 72  IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN 131
              V  L LA        E  + A L      L  L L+ N+I+G         L  L N
Sbjct: 64  HSSVDALHLAATGLRGDIELSIIARL----SNLRFLILSSNNISGTFPTT----LQALKN 115

Query: 132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI 191
           L  L LDFN F+  + S L     L+ L L +NR NGS+    +  L+ L  L+++ N  
Sbjct: 116 LTELKLDFNEFSGPLPSDLSSWERLQVLDLSNNRFNGSIP-SSIGKLTLLHSLNLAYNKF 174

Query: 192 NNPVIPKDYRGLRKLNTLH--LGGT 214
           +  +      GL+ LN  H  L GT
Sbjct: 175 SGEIPDLHIPGLKLLNLAHNNLTGT 199

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
224120284	929	predicted protein [Populus trichocarpa]	0.885	0.217	0.460	2e-42
224142499	436	predicted protein [Populus trichocarpa]	0.899	0.470	0.467	3e-40
224142513	290	predicted protein [Populus trichocarpa]	0.881	0.693	0.444	4e-38
224142721	926	predicted protein [Populus trichocarpa]	0.872	0.214	0.458	8e-36
224142723	923	predicted protein [Populus trichocarpa]	0.846	0.209	0.452	1e-35
255585991	743	serine-threonine protein kinase, plant-t	0.890	0.273	0.442	1e-35
224134597	947	predicted protein [Populus trichocarpa]	0.833	0.200	0.453	5e-34
224112233	976	leucine rich repeat family protein with	0.837	0.195	0.462	6e-34
224142717	876	predicted protein [Populus trichocarpa]	0.846	0.220	0.460	2e-33
224120450	935	predicted protein [Populus trichocarpa]	0.671	0.163	0.503	3e-33

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 142/217 (65%), Gaps = 15/217 (6%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERSALLQIKHFFN--GDQHLQNWVDDENYSDCCQWERV 66
           V  +I ++++++GW   GCLE+ER ALLQIK  F+        +W  D N   CC+W++V
Sbjct: 10  VIMIINVVVLIQGWRCHGCLEEERVALLQIKDAFSYPNGSFPHSWGRDAN---CCEWKQV 66

Query: 67  ECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRL 126
           +CN T  RV+K+DL+  R WE  +W +NASLF PF +L +L+L  N IAGC+EN+G +RL
Sbjct: 67  QCNSTTLRVVKIDLSFSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGCLENEGFERL 126

Query: 127 SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIK----ELDSLSNLE 182
           S L NL+ L L  N FN+SIFSSLGGLSSLK+LSL +N + G++ ++    E+  +SNLE
Sbjct: 127 SVLGNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEGGEDEVLKMSNLE 186

Query: 183 ELDMSDNAINNPVIPKDYRGLRKLNTL-----HLGGT 214
            LD+  N  +N ++   ++GL  L  L     HL GT
Sbjct: 187 YLDLGGNRFDNSIL-SSFKGLSSLKNLGLEKNHLKGT 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142499|ref|XP_002324594.1| predicted protein [Populus trichocarpa] gi|222866028|gb|EEF03159.1| predicted protein [Populus trichocarpa]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/216 (46%), Positives = 134/216 (62%), Gaps = 11/216 (5%)

Query: 3   GSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNGDQH------LQNWVDDEN 56
           G  R  +  +  ++++     S+GCLE+ER ALLQIK  F GD        L +W  D  
Sbjct: 2   GLNRFSLPAVAVMVMINAMLLSQGCLEEERIALLQIKTSF-GDHPNDIASPLFSWGKD-- 58

Query: 57  YSDCCQWERVEC-NETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIA 115
            + CC W+RV C N T  RVI+++L   R     + Y+NAS+F PFQ+L  LDL+ N IA
Sbjct: 59  -ALCCSWKRVTCSNSTTRRVIEINLYFTRDRSMEDLYLNASIFLPFQELNVLDLSGNGIA 117

Query: 116 GCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL 175
           GCV N+G +RLSRL  L+ L L  N+FNNSI SS+ GLSSLK+L+L  N+L GS+D KE 
Sbjct: 118 GCVANEGFERLSRLAKLEVLLLSDNYFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTKEF 177

Query: 176 DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           DSLSNLEEL ++ N I + V      G  +LN L +
Sbjct: 178 DSLSNLEELSLAKNEIQDFVTLTGSEGPSRLNKLEV 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142513|ref|XP_002324601.1| predicted protein [Populus trichocarpa] gi|222866035|gb|EEF03166.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/225 (44%), Positives = 129/225 (57%), Gaps = 24/225 (10%)

Query: 13  IFILLVVKGWWS-EGCLEQERSALLQIKHFFNGDQH----LQNWVDDENYSDCCQWERVE 67
           + +++++      EGCLE+ER ALLQIK       H    L +W +D   + CC W  V 
Sbjct: 10  VVVMMMINAMLPLEGCLEEERIALLQIKTSMVDPNHMGSPLLSWGED---ALCCNWAGVT 66

Query: 68  CNETIGRVIKLDLAQIRKW-------------ESAEWYMNASLFTPFQQLESLDLTWNSI 114
           C+   GRVI + L   R W                +WY+NA++F PFQ+L +L L+ N I
Sbjct: 67  CDSITGRVIVIFLHNARGWFIDPSKGVWDRNASMGDWYLNATMFLPFQELNTLGLSNNDI 126

Query: 115 AGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKE 174
           AGCV N+G +RLSRL  L+ L L  N FNNSI SS  GLSSLKH+ L  N+L GS+DIKE
Sbjct: 127 AGCVPNEGFERLSRLTKLESLDLGLNNFNNSILSSFKGLSSLKHIYLESNQLKGSIDIKE 186

Query: 175 LDSLSNLEELDMSDNAINNPVIPK---DYRGLRKLNTLHLGGTEI 216
            DSLS L+ELD+S N I N V      +   L KL TL L   +I
Sbjct: 187 FDSLSKLQELDLSRNEIQNLVTSTGSGEPSRLNKLETLDLSSNKI 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/205 (45%), Positives = 127/205 (61%), Gaps = 6/205 (2%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERSALLQIKHFFN--GDQHLQNWVDDENYSDCCQWERV 66
           V  ++ I + ++GW   GCLE+ER ALL +K   N      L +W     +++CC WER+
Sbjct: 7   VLTVLVITVSLQGWVPLGCLEEERIALLHLKDALNYPNGTSLPSW--RIAHANCCDWERI 64

Query: 67  ECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRL 126
            CN + GRV +L L   R  E  +WY+NASLF PFQQL  L L  N IAG VE KG   L
Sbjct: 65  VCNSSTGRVTELYLGSTRNEELGDWYLNASLFLPFQQLNILYLWGNRIAGWVEKKGGYEL 124

Query: 127 SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDM 186
            +L+NL+ L L+ N FNNSI S + GL SLK L L +NRL GS+D+KE  SL++LE L +
Sbjct: 125 QKLSNLEILDLESNSFNNSILSFVEGLPSLKSLYLDYNRLEGSIDLKE--SLTSLETLSL 182

Query: 187 SDNAINNPVIPKDYRGLRKLNTLHL 211
             N I+N V  ++ + L  L +L+L
Sbjct: 183 GGNNISNLVASRELQNLSSLESLYL 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 123/201 (61%), Gaps = 8/201 (3%)

Query: 16  LLVVKGWWSEGCLEQERSALLQIKHFFN--GDQHLQNWVDDENYSDCCQWERVECNETIG 73
           ++ ++GW   GCLE+ER ALL +K   N      L +W+  +  + CC WE + C+ + G
Sbjct: 1   MVSLQGWLPLGCLEEERIALLHLKDALNYPNGTSLPSWIKGD--AHCCDWESIICDSSTG 58

Query: 74  RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLK 133
           RV +LDL  +R  E  +WY+NASLF PFQQL  L LT N IAG VE KG    SRL+NL+
Sbjct: 59  RVTELDLEGVRDRELGDWYLNASLFLPFQQLNGLYLTANRIAGLVEKKGGYEQSRLSNLE 118

Query: 134 FLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIK---ELDSLSNLEELDMSDNA 190
           +L L  N F+NSI S +  LSSLK L L +NRL G +D+K   EL   SNLE LD+  N 
Sbjct: 119 YLDLGINGFDNSILSYVERLSSLKSLYLNYNRLEGLIDLKGGYELTKSSNLEHLDLGYNR 178

Query: 191 INNPVIPKDYRGLRKLNTLHL 211
            +N ++     G+  L +L+L
Sbjct: 179 FDNSIL-SFVEGISSLKSLYL 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585991|ref|XP_002533665.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526433|gb|EEF28711.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/208 (44%), Positives = 131/208 (62%), Gaps = 5/208 (2%)

Query: 12  LIFILLVVKG-WWSEGCLEQERSALLQIKHFFNGDQHLQNWVDD-ENYSDCCQWERVECN 69
           +  I + ++G W S+GCLE ER+AL+QIK FFN   H  N++     Y DCC W +V CN
Sbjct: 1   MTIIFIDIQGKWRSDGCLEVERNALMQIKPFFN--YHNGNFLSSWGFYDDCCNWNKVVCN 58

Query: 70  ETIGRVIKLDLAQIRK-WESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSR 128
              GRV  L L   R  W+S +WY+NASLF PFQ+L++L +  N+IAGC+EN+G +RLS 
Sbjct: 59  TITGRVTALQLGGTRHGWDSKDWYLNASLFLPFQELKNLSVFGNNIAGCIENEGFERLST 118

Query: 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD 188
           L NL+ L+L +N FNN+I S     SSLK L +  N+L G ++++EL+ L++LEEL M+ 
Sbjct: 119 LENLEILNLGYNNFNNNILSFFSDFSSLKSLYMNDNKLKGILNVEELNYLTSLEELKMAG 178

Query: 189 NAINNPVIPKDYRGLRKLNTLHLGGTEI 216
           N I        +   R L  L+L  + +
Sbjct: 179 NQIEGFQSLNGFPVFRNLQHLYLDSSTL 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 129/203 (63%), Gaps = 13/203 (6%)

Query: 12  LIFILLVVKGWWSEGCLEQERSALLQIK---HFFNGDQHLQNWVDDENYSDCCQWERVEC 68
           L+ +++ ++GW   GCL++ER ALLQ+K   ++ NG   L +W+  +  + CC WER+EC
Sbjct: 12  LVIMMVSLQGWLPLGCLDEERIALLQLKDSLNYPNGTS-LPSWIKAD--AHCCSWERIEC 68

Query: 69  NETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSR 128
             + GRV +L L + R  E  +WY+NASL  PFQ+L++L+L  N +AG VE KG   L R
Sbjct: 69  --STGRVTELHLEETRNEELGDWYLNASLLLPFQELKALNLRGNRLAGWVEKKGGYELQR 126

Query: 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD 188
           L NL +L+L  N F+NSI S + G  SLK L L +NRL G +D+KE  SLS+LE L +S 
Sbjct: 127 LRNLDYLNLRSNSFDNSILSYVEGFPSLKSLYLDYNRLEGLIDLKE--SLSSLEVLGLSG 184

Query: 189 NAINNPVIPKDYRGLRKLNTLHL 211
           N I+  V     RG   L TL+L
Sbjct: 185 NNIDKLVAS---RGPSNLTTLYL 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 125/199 (62%), Gaps = 8/199 (4%)

Query: 12  LIFILLVVKGWWSEGCLEQERSALLQIK---HFFNGDQHLQNWVDDENYSDCCQWERVEC 68
           L+ +++ ++GW   GCLE+ER ALL +K   ++ NG   L +W     ++ CC WE + C
Sbjct: 5   LVILMVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTS-LPSW--RIAHAHCCDWESIVC 61

Query: 69  NETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSR 128
           N + GRV  LDL  +R  +  +WY+NASLF PFQQL  L L  N IAG VENKG   L +
Sbjct: 62  NSSTGRVTVLDLWGVRNEDLGDWYLNASLFLPFQQLNVLYLWNNRIAGWVENKGGSELQK 121

Query: 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD 188
           L+NL+ L+L+ N FNNSI S + GL SLK L L +NRL G +D+KE  SLS+LE L +  
Sbjct: 122 LSNLESLYLEDNSFNNSILSFVEGLPSLKSLYLSYNRLEGLIDLKE--SLSSLETLGLGG 179

Query: 189 NAINNPVIPKDYRGLRKLN 207
           N I+  V  +    LR L+
Sbjct: 180 NNISKLVASRGLSNLRYLS 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142717|ref|XP_002324701.1| predicted protein [Populus trichocarpa] gi|222866135|gb|EEF03266.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 11/204 (5%)

Query: 12  LIFILLVVKGWWSEGCLEQERSALLQIK---HFFNGDQHLQNWVDDENYSDCCQWERVEC 68
           L  +++ ++GW + GCL++ER ALL +K   ++ NG   L +W   +  + CC+WE + C
Sbjct: 11  LAIMMVSLQGWVALGCLKEERIALLHLKDSLNYPNGTS-LPSWRKGD--TRCCEWESIVC 67

Query: 69  NETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSR 128
           +   GRV  L L  +R  E  +WY+N SLF PFQQL SL L+ N IAG VE KG   L +
Sbjct: 68  SSRTGRVTGLYLWSVRNQELGDWYLNVSLFLPFQQLNSLILSDNRIAGWVEKKGGYGLQK 127

Query: 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD 188
           L+NLK L L+ N FNNSI S + GL SLK L L +NRL G +D+KE  SLS+L+ L +  
Sbjct: 128 LSNLKILALEDNSFNNSILSFVEGLPSLKTLYLDYNRLEGLIDLKE--SLSSLKHLGLGG 185

Query: 189 NAINNPVIPKDYRGLRKLNTLHLG 212
           N I+  V     RG   LNTL+LG
Sbjct: 186 NNISKLVAS---RGPSSLNTLYLG 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120450|ref|XP_002331051.1| predicted protein [Populus trichocarpa] gi|222872981|gb|EEF10112.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 105/159 (66%), Gaps = 6/159 (3%)

Query: 19  VKGWWS-EGCLEQERSALLQIKHFFN--GDQHLQNWVDDENYSDCCQWERVECNETIGRV 75
           +  WWS  GCL++ERSALL+IK  FN      LQ+W      +DCC W+ V+CN T GRV
Sbjct: 3   LNSWWSCHGCLDEERSALLRIKSSFNYPSGTFLQSW---GKVADCCSWKGVDCNFTTGRV 59

Query: 76  IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFL 135
           ++LDL+  R+    + Y+N SLF PFQ+L+ LDL+ N I GCVEN+G +RLS L++L FL
Sbjct: 60  VQLDLSSKREEGLGDLYLNVSLFRPFQELQYLDLSGNFIVGCVENEGFERLSGLDSLVFL 119

Query: 136 HLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKE 174
            L  N F+N I SSLGGLS L  L L  N+L G + + E
Sbjct: 120 DLGVNKFDNRILSSLGGLSCLTTLYLDGNQLKGEISVDE 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.942	0.220	0.305	6.3e-21
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.820	0.205	0.313	6.1e-19
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.815	0.198	0.306	4.6e-18
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.907	0.214	0.272	7.8e-18
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.600	0.145	0.301	1e-11
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.412	0.086	0.386	3.5e-10
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.907	0.244	0.274	5.3e-10
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.565	0.177	0.326	7e-10
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.469	0.123	0.328	8.2e-09
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.688	0.176	0.254	4.2e-08

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 73/239 (30%), Positives = 115/239 (48%)

Query:     3 GSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQIKHFFNG-------DQHLQNWVDDE 55
             G   +WV   + +L+ ++G+  + C+E+ER ALL++K +          D  L  W +D 
Sbjct:     8 GQNLIWV---MLLLVQLRGY--KCCIEKERKALLELKKYMISKTADWGLDSVLPTWTNDT 62

Query:    56 NYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLT---WN 112
               S+CC+WE ++CN+T GR+I+L + Q    ES+   +N SL  PF++L SL+L+   +N
Sbjct:    63 K-SNCCRWEGLKCNQTSGRIIELSIGQTNFKESS--LLNLSLLHPFEELRSLNLSGEIYN 119

Query:   113 SIAGCVEN-KGLDRLSRLNNLKFLHLDFNWFNNSIXXXXXXXXXXXXXXXXXNRLNGSVD 171
                G  ++ +G + L RL NL+ L L  N FNNSI                 N + G + 
Sbjct:   120 EFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLP 179

Query:   172 IKXXXXXXXXXXXXXXXNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI---DGSKVLIN 227
             IK               +  N   IP ++  L KL  L L   + + +      KVL N
Sbjct:   180 IKELKNLTKLELLDLSRSGYNGS-IP-EFTHLEKLKALDLSANDFSSLVELQELKVLTN 236

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 6.1e-19, P = 6.1e-19
 Identities = 62/198 (31%), Positives = 92/198 (46%)

Query:    27 CLEQERSALLQIKHFFNG-------DQHLQNWVDDENYSDCCQWERVECNETIGRVIKLD 79
             C+E+ER ALL++K F          D  L  W +D   SDCCQWE ++CN T  R+  L 
Sbjct:    13 CIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK-SDCCQWENIKCNRTSRRLTGLS 71

Query:    80 LAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVEN-KGLDRLSRLNNLKFLHLD 138
             L      E +   +N SL  PF+++ SLDL+ + + G V++ +G   L RL NL+ L+  
Sbjct:    72 LYTSYYLEIS--LLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFS 129

Query:   139 FNWFNNSIXXXXXXXXXXXXXXXXXNRLNGSVDIKXXXXXXXXXXXXXXXNAINNPVIPK 198
              N FNNSI                 N + G + +K               N I+  +  +
Sbjct:   130 SNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLDLSGNRIDGSMPVR 189

Query:   199 DYRGLRKLNTLHLGGTEI 216
             ++  L+KL  L L    I
Sbjct:   190 EFPYLKKLKALDLSSNGI 207

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 62/202 (30%), Positives = 97/202 (48%)

Query:    27 CLEQERSALLQIKHFF------NG-DQHLQNWVDDENYSDCCQWERVECNETIGRVIKLD 79
             C+E+ER ALL++K +       +G D  L  W +D   SDCCQW+ ++CN T GRVI+L 
Sbjct:    13 CIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK-SDCCQWDGIKCNRTSGRVIELS 71

Query:    80 LAQIRKWESAEWYMNASLFTPFQQLESLDLT---WNSIAGCVEN-KGLDRLSRLNNLKFL 135
             +  +   ES+   +N SL  PF+++ SL+L+   +N   G  ++ +G   LS L NLK +
Sbjct:    72 VGDMYFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSGLRNLKIM 129

Query:   136 HLDFNWFNNSIXXXXXXXXXXXXXXXXXNRLNGSVDIKXXXXXXXXXXXXXXXNAINNPV 195
              L  N+FN S                  N ++G   IK               N +N  +
Sbjct:   130 DLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLELLDLRANKLNGSM 189

Query:   196 IPKDYRGLRKLNTLHLGGTEIA 217
               ++   L+KL  L L   + +
Sbjct:   190 --QELIHLKKLKALDLSSNKFS 209

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 7.8e-18, P = 7.8e-18
 Identities = 60/220 (27%), Positives = 101/220 (45%)

Query:     3 GSKRVWVSELIFILLVVKGWWSEGCLEQERSALLQI-KHFFN---GDQHLQNWVDDENYS 58
             G   +WV   + ++  + G+ S  C+++E+ AL ++ KH  +    +  L  W +D   S
Sbjct:     8 GHNLIWV---MLLMGQLHGYKS--CIDEEKIALFELRKHMISRTESESVLPTWTNDTT-S 61

Query:    59 DCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCV 118
             DCC+W+ V CN   GRV ++    +   +++   +N SL  PF+ + SL+L+ +  +G  
Sbjct:    62 DCCRWKGVACNRVSGRVTEISFGGLSLKDNS--LLNLSLLHPFEDVRSLNLSSSRCSGLF 119

Query:   119 EN-KGLDRLSRLNNLKFLHLDFNWFNNSIXXXXXXXXXXXXXXXXXNRLNGSVDIKXXXX 177
             ++ +G   L +L  L+ L L  N FNNSI                 N ++GS   K    
Sbjct:   120 DDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRD 179

Query:   178 XXXXXXXXXXXNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
                        N  N  +  ++   LRKL  L L G E +
Sbjct:   180 LTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFS 219

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
 Identities = 48/159 (30%), Positives = 72/159 (45%)

Query:    27 CLEQERSALLQIKHFF------NGDQHLQN--WVDDE-------NYSDCCQWERVECNET 71
             CL ++R ALL++K+ F      + D   +N   V          N SDCC WE + C+  
Sbjct:    38 CLPEQRDALLELKNEFEIGKPSSNDYCYRNNSRVSPHPTTESWRNNSDCCNWEGITCDTK 97

Query:    72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN 131
              G VI+LDL+    W    ++ N+SLF   Q L  LDLT N + G + +     +  L++
Sbjct:    98 SGEVIELDLSC--SWLYGSFHSNSSLFR-LQNLRVLDLTQNDLDGEIPSS----IGNLSH 150

Query:   132 LKFLHLDFNWFNNSIXXXXXXXXXXXXXXXXXNRLNGSV 170
             L  LHL +N F   I                 N+ +G +
Sbjct:   151 LTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQI 189

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 41/106 (38%), Positives = 58/106 (54%)

Query:    48 LQNWVDDENYSDCCQWERVECNETI-GRVIKLDLAQIRK--WESAEWYMNASLFTPFQQL 104
             L++W   E   DCC+WERV+C++ I G VI L L ++    +ES    +N SL   F QL
Sbjct:    27 LKSWTHHEG--DCCRWERVKCSDAINGHVIGLSLDRLVPVAFESQTRSLNLSLLHSFPQL 84

Query:   105 ESLDLTWNSIAGCVEN----KGLDRLSRLNNLKFLHLDFNWFNNSI 146
             +SL+L+WN      ++    K    L +L  L F H   N F+NSI
Sbjct:    85 QSLNLSWNWFTNLSDHFLGFKSFGTLDKLTTLDFSH---NMFDNSI 127

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 62/226 (27%), Positives = 89/226 (39%)

Query:     1 MCGSKRVWVSE---LIFILLVVKGWWSEG---CLEQERSALLQIKHFF--NGDQHLQN-W 51
             M  S R WV     +IF+ L+V    S     C + +R ALL+ +  F  N   H+ N W
Sbjct:     2 MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query:    52 VDDENYS-DCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLT 110
                 N S DCC W  V CN+  G+VI LD+     + +     N+SLF   Q L  LDLT
Sbjct:    62 RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNT--FLNNYLKTNSSLFK-LQYLRHLDLT 118

Query:   111 WNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIXXXXXXXXXXXXXXXXXNRLNGSV 170
               ++ G + +     L  L++L  ++L FN F   I                 N L G +
Sbjct:   119 NCNLYGEIPSS----LGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEI 174

Query:   171 DIKXXXXXXXXXXXXXXXNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
                                 +    IP     L++L  L L    +
Sbjct:   175 PSSLGNLSRLVNLELFSNRLVGK--IPDSIGDLKQLRNLSLASNNL 218

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 7.0e-10, P = 7.0e-10
 Identities = 47/144 (32%), Positives = 73/144 (50%)

Query:     2 CGSKR----VWVSELIFILL-VVKGWWSEGCLEQERSALLQIKHFF---NGDQHLQNWVD 53
             C  +R    +W   LIF L   +     + CL  +R ALL+ K+ F     D H++    
Sbjct:     4 CSERRMMTVIWSLCLIFCLSNSILAIAKDLCLPDQRDALLEFKNEFYVQEFDPHMKCEKA 63

Query:    54 DE---NYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLT 110
              E   N +DCC W RV C+   G+V++LDL  +    +     N+SLF   Q L+SL+L+
Sbjct:    64 TETWRNKTDCCSWNRVSCDPKTGKVVELDL--MSSCLNGPLRSNSSLFR-LQHLQSLELS 120

Query:   111 WNSIAGCVENKGLDRLSRLNNLKF 134
              N+I+G + +  +  L  L +L F
Sbjct:   121 SNNISGILPDS-IGNLKYLRSLSF 143

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 8.2e-09, P = 8.2e-09
 Identities = 44/134 (32%), Positives = 70/134 (52%)

Query:    27 CLEQERSALLQIK-HF------FNG-DQHLQNWVDDENYSDCCQWERVECNETIGRVIKL 78
             C  ++R ALL++K  F      F+G     ++W    N SDCC W+ + CN+  G V++L
Sbjct:    39 CRLEQRDALLELKKEFKIKKPCFDGLHPTTESWA---NNSDCCYWDGITCNDKSGEVLEL 95

Query:    79 DLAQIRKWESAEWYMNASLFTPFQQ--LESLDLTWNSIAG----CVENKGLDRLSRLNNL 132
             DL+  R    + ++ N+SLFT      L +LDL++N  +G    C+EN         ++L
Sbjct:    96 DLS--RSCLQSRFHSNSSLFTVLNLRFLTTLDLSYNYFSGQIPSCIEN--------FSHL 145

Query:   133 KFLHLDFNWFNNSI 146
               L L  N+F+  I
Sbjct:   146 TTLDLSKNYFSGGI 159

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 41/161 (25%), Positives = 65/161 (40%)

Query:    60 CCQWERVECNETIGRVI--KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC 117
             CC W R++C+ T  RVI   L L  IR  +     +N + F PF++L+SL+L+     G 
Sbjct:     7 CCHWRRIKCDITSKRVIGISLSLESIRPPDPLP-QLNLTFFYPFEELQSLNLSSGYFKGW 65

Query:   118 V-ENKGLDRLSRLNNLKFLHLDFNWFNNSIXXXXXXXXXXXXXXXXXNRLNGSVDIKXXX 176
               E KG   L  L NL+ L L  N+++ S+                 N   G   ++   
Sbjct:    66 FDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFKGGFPVQELI 125

Query:   177 XXXXXXXXXXXXNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
                         N  +  +  ++   LR L  L L   + +
Sbjct:   126 NLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFS 166

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 6/113 (5%)

Query: 99  TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKH 158
           T    LE L L  N + G +  +    L ++ +LK+++L +N  +  I   +GGL+SL H
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 159 LSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           L L +N L G +    L +L NL+ L +  N ++ P IP     L+KL +L L
Sbjct: 241 LDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDL 291

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
            L+ L L  N   G     GL        L+ L L  N F+ ++   LG LS L  L L 
Sbjct: 453 SLQMLSLARNKFFG-----GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            N+L+G +   EL S   L  LD+S N ++   IP  +  +  L+ L L   +++
Sbjct: 508 ENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQ-IPASFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 32/156 (20%)

Query: 28  LEQERSALLQIKHF--------FNGD-----QHLQNWVDDENYSDCCQWERVECNETIGR 74
           L +E SAL  +K          +NGD     QH  +  D       CQ++  +    I  
Sbjct: 370 LLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGAD-------CQFDSTKGKWFIDG 422

Query: 75  VIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKF 134
           +  LD   +R +   +        +  + L+S++L+ NSI G +       L  + +L+ 
Sbjct: 423 L-GLDNQGLRGFIPNDI-------SKLRHLQSINLSGNSIRGNIPPS----LGSITSLEV 470

Query: 135 LHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSV 170
           L L +N FN SI  SLG L+SL+ L+L  N L+G V
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 28 LEQERSALLQIKHFFNGDQH--LQNWVDDENYSDCCQWERVECN 69
          L  +R ALL  K   NGD    L +W  + + SD C W  V C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSW--NPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 6/96 (6%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
           S+F+  Q+L SLDL+ NS++G +     + + +L NL+ LHL  N F   I  +L  L  
Sbjct: 279 SIFS-LQKLISLDLSDNSLSGEIP----ELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI 191
           L+ L L+ N+ +G +  K L   +NL  LD+S N +
Sbjct: 334 LQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 6/108 (5%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFH 163
           LE+LDL+ N ++G + N     +   ++LK L L  N     I +SL  L+SL+ L+L  
Sbjct: 142 LETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 164 NRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           N+L G +  +EL  + +L+ + +  N ++   IP +  GL  LN L L
Sbjct: 198 NQLVGQIP-RELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLNHLDL 243

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 42/169 (24%)

Query: 46  QHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFT-PFQQL 104
           ++L NW    + +D C W+ + CN    RV+ +DL+   K  S +  +++++F  P+  +
Sbjct: 46  KYLSNW---NSSADVCLWQGITCN-NSSRVVSIDLSG--KNISGK--ISSAIFRLPY--I 95

Query: 105 ESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHN 164
           ++++L+ N ++G + +                         IF++    SSL++L+L +N
Sbjct: 96  QTINLSNNQLSGPIPD------------------------DIFTTS---SSLRYLNLSNN 128

Query: 165 RLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
              GS+      S+ NLE LD+S+N ++   IP D      L  L LGG
Sbjct: 129 NFTGSI---PRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGG 173

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA 190
           NLK L L  N        +  GL +LK L L  N L  S+  +    L +L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 191 I 191
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.0 bits (79), Expect = 0.003
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN 193
           +L+ L L +N++    D+  L +L NLE LD+S N I +
Sbjct: 2   NLETLDLSNNQIT---DLPPLSNLPNLETLDLSGNKITD 37

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN03150	623	hypothetical protein; Provisional	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.45
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.45
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.44
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.4
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.38
PLN03150	623	hypothetical protein; Provisional	99.38
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.31
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.28
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.24
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.15
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.13
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.11
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.1
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.09
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.06
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.04
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.99
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.84
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.83
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.78
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.72
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.61
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.55
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.48
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.46
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.44
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.07
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.45
PRK15386	426	type III secretion protein GogB; Provisional	97.43
PRK15386	426	type III secretion protein GogB; Provisional	96.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.59
smart00370	26	LRR Leucine-rich repeats, outliers.	96.59
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.51
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.31
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.98
KOG4308	478	consensus LRR-containing protein [Function unknown	94.84
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.77
smart00370	26	LRR Leucine-rich repeats, outliers.	94.72
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.72
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	93.99
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.65
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.81
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.83
KOG4308	478	consensus LRR-containing protein [Function unknown	90.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.51
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	87.07
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.04
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.28
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.16

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=7.1e-25  Score=205.35  Aligned_cols=177  Identities=26%  Similarity=0.404  Sum_probs=121.2

Q ss_pred             cHHHHHHHHHHHhhCCCCC-CCCCCCCCCCCCCCceeeeEEECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCE
Q 027116           28 LEQERSALLQIKHFFNGDQ-HLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLES  106 (228)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~-~~~~W~~~~~~~~~c~~~gv~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~  106 (228)
                      .+.|+.||++||+.+.++. .+.+|.   ...+||.|.|++|.+ .++|+.|++++|.+..  .   .+..+..+++|++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~--~---~~~~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNISG--K---ISSAIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCccc--c---CChHHhCCCCCCE
Confidence            6689999999999998775 778994   567899999999986 5799999999998743  2   1345667777777


Q ss_pred             EeCCCCCcccccCcccccccCCC----------------------CCCcEEECCCCccCcccccccCCCCCCCEEeccCc
Q 027116          107 LDLTWNSIAGCVENKGLDRLSRL----------------------NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHN  164 (228)
Q Consensus       107 L~ls~n~l~~~~~~~~~~~l~~l----------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  164 (228)
                      |++++|++.+..|...   +..+                      ++|++|++++|.+++..|..++.+++|++|++++|
T Consensus        98 L~Ls~n~~~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  174 (968)
T PLN00113         98 INLSNNQLSGPIPDDI---FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN  174 (968)
T ss_pred             EECCCCccCCcCChHH---hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC
Confidence            7777777765544431   2234                      44555555555555555555666666666666666


Q ss_pred             cccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116          165 RLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       165 ~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      .+.+.+|. .+.++++|++|++++|.+.+.+|. .+.++++|++|++++|+++.
T Consensus       175 ~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        175 VLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             cccccCCh-hhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCC
Confidence            66655555 566666666666666666665555 66666666666666666653

>PLN03150 hypothetical protein; Provisional

Probab=99.73  E-value=6.3e-17  Score=144.68  Aligned_cols=159  Identities=29%  Similarity=0.343  Sum_probs=122.0

Q ss_pred             CCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCceeeeEEECC--CC--CcEEEEEcCCCCcccccccccCccccc
Q 027116           24 SEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNE--TI--GRVIKLDLAQIRKWESAEWYMNASLFT   99 (228)
Q Consensus        24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~W~~~~~~~~~c~~~gv~c~~--~~--~~v~~L~l~~n~l~~~~~~~~~~~~~~   99 (228)
                      ...+.++|..||..+|+.+..+. ..+|.++......|.|.|+.|..  ..  ..|+.|+|++|.+.  |.   .+..+.
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~-~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--g~---ip~~i~  439 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPL-RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--GF---IPNDIS  439 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcc-cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc--cc---CCHHHh
Confidence            34667889999999999987553 24795321111123799999953  11  25889999999883  33   234578


Q ss_pred             CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC-C
Q 027116          100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS-L  178 (228)
Q Consensus       100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~-l  178 (228)
                      .+++|+.|++++|.+.+.+|..    +..+++|+.|+|++|++++.+|+.++.+++|++|+|++|.++|.+|. .+.. .
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~  514 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRL  514 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhcc
Confidence            8899999999999998887766    88899999999999999999999999999999999999999988887 5554 3


Q ss_pred             CCCCEEEcccCCCCC
Q 027116          179 SNLEELDMSDNAINN  193 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~  193 (228)
                      .++..+++.+|....
T Consensus       515 ~~~~~l~~~~N~~lc  529 (623)
T PLN03150        515 LHRASFNFTDNAGLC  529 (623)
T ss_pred             ccCceEEecCCcccc
Confidence            567788888886544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.66  E-value=4.5e-16  Score=146.26  Aligned_cols=139  Identities=27%  Similarity=0.349  Sum_probs=110.8

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCC----------------------CCEEeCCCCCcccccCcccccccCCC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQ----------------------LESLDLTWNSIAGCVENKGLDRLSRL  129 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~----------------------L~~L~ls~n~l~~~~~~~~~~~l~~l  129 (228)
                      ...++.|++++|++.  +.  ++...+..+++                      |++|++++|.+++..|..    ++.+
T Consensus        92 l~~L~~L~Ls~n~~~--~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~----~~~l  163 (968)
T PLN00113         92 LPYIQTINLSNNQLS--GP--IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND----IGSF  163 (968)
T ss_pred             CCCCCEEECCCCccC--Cc--CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH----HhcC
Confidence            346778888888773  22  22233334444                      445555555554444433    7889


Q ss_pred             CCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116          130 NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL  209 (228)
Q Consensus       130 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L  209 (228)
                      ++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|. .++.+++|+.|++++|.+.+.+|. .+.++++|++|
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L  241 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHL  241 (968)
T ss_pred             CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEE
Confidence            9999999999999999999999999999999999999988887 899999999999999999998888 89999999999


Q ss_pred             ECCCCcCCccc
Q 027116          210 HLGGTEIAMID  220 (228)
Q Consensus       210 ~L~~N~i~~i~  220 (228)
                      ++++|+++...
T Consensus       242 ~L~~n~l~~~~  252 (968)
T PLN00113        242 DLVYNNLTGPI  252 (968)
T ss_pred             ECcCceecccc
Confidence            99999987543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.64  E-value=1.3e-17  Score=141.97  Aligned_cols=122  Identities=29%  Similarity=0.395  Sum_probs=84.5

Q ss_pred             cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh--hhhc
Q 027116           99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI--KELD  176 (228)
Q Consensus        99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~  176 (228)
                      +..+.|+.|+|++|+|+...+..    |..+..|++|+|++|.++......|.++.+|++|||++|.+++.+..  ..+.
T Consensus       314 sftqkL~~LdLs~N~i~~l~~~s----f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~  389 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITRLDEGS----FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN  389 (873)
T ss_pred             hhcccceeEeccccccccCChhH----HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence            33444555555555555444433    44455555555555555544444566677777778877777644332  2577


Q ss_pred             CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116          177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      .+++|+.|++.+|++.. +|...|.++.+|++|||.+|.|.+|...+|.
T Consensus       390 gl~~LrkL~l~gNqlk~-I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe  437 (873)
T KOG4194|consen  390 GLPSLRKLRLTGNQLKS-IPKRAFSGLEALEHLDLGDNAIASIQPNAFE  437 (873)
T ss_pred             cchhhhheeecCceeee-cchhhhccCcccceecCCCCcceeecccccc
Confidence            78899999999999988 8888999999999999999999999988875

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=9.3e-17  Score=117.95  Aligned_cols=136  Identities=24%  Similarity=0.391  Sum_probs=103.6

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|.|++|.+...      +..++.+.+|+.|++++|+++..+..     ++.+++|+.|+++-|++. ..|..|+
T Consensus        32 ~s~ITrLtLSHNKl~~v------ppnia~l~nlevln~~nnqie~lp~~-----issl~klr~lnvgmnrl~-~lprgfg   99 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVV------PPNIAELKNLEVLNLSNNQIEELPTS-----ISSLPKLRILNVGMNRLN-ILPRGFG   99 (264)
T ss_pred             hhhhhhhhcccCceeec------CCcHHHhhhhhhhhcccchhhhcChh-----hhhchhhhheecchhhhh-cCccccC
Confidence            46788999999998532      33468889999999999999887665     788888888888888887 7888888


Q ss_pred             CCCCCCEEeccCccccC------------------------ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc
Q 027116          152 GLSSLKHLSLFHNRLNG------------------------SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN  207 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~------------------------~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~  207 (228)
                      .++.|+.|||++|++..                        .+|+ .++++.+|+.|.+.+|.+-. +|. .++.+.+|+
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~-lpk-eig~lt~lr  176 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLS-LPK-EIGDLTRLR  176 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhh-CcH-HHHHHHHHH
Confidence            88888888888887752                        2444 56667777777777777666 666 677777777


Q ss_pred             EEECCCCcCCcccCC
Q 027116          208 TLHLGGTEIAMIDGS  222 (228)
Q Consensus       208 ~L~L~~N~i~~i~~~  222 (228)
                      .|.+.+|+++.+|++
T Consensus       177 elhiqgnrl~vlppe  191 (264)
T KOG0617|consen  177 ELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHhcccceeeecChh
Confidence            777777777777654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.53  E-value=4.4e-15  Score=126.84  Aligned_cols=143  Identities=27%  Similarity=0.354  Sum_probs=106.0

Q ss_pred             CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116           71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL  150 (228)
Q Consensus        71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  150 (228)
                      ..++++.|+|.+|.|.+     +..+.++.++.|+.||||.|.|+......    |..-.++++|+|++|.|+..-...|
T Consensus       123 ~sghl~~L~L~~N~I~s-----v~se~L~~l~alrslDLSrN~is~i~~~s----fp~~~ni~~L~La~N~It~l~~~~F  193 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISS-----VTSEELSALPALRSLDLSRNLISEIPKPS----FPAKVNIKKLNLASNRITTLETGHF  193 (873)
T ss_pred             cccceeEEeeecccccc-----ccHHHHHhHhhhhhhhhhhchhhcccCCC----CCCCCCceEEeeccccccccccccc
Confidence            35678889998888854     33456777888888888888887765554    6667788888888888887766778


Q ss_pred             CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      .++.+|..|.|++|+++ .+|...|.++++|+.|+|..|+|.- +..-.|.++++|+.|.|..|.|..+..++|
T Consensus       194 ~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iri-ve~ltFqgL~Sl~nlklqrN~I~kL~DG~F  265 (873)
T KOG4194|consen  194 DSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRI-VEGLTFQGLPSLQNLKLQRNDISKLDDGAF  265 (873)
T ss_pred             cccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceee-ehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence            88888888888888887 7787777778888888888887764 222256666666666666666666666655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=3.6e-16  Score=114.90  Aligned_cols=111  Identities=28%  Similarity=0.398  Sum_probs=77.2

Q ss_pred             ccccCCCCCCEEeCCCCCcccc-cCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhh
Q 027116           96 SLFTPFQQLESLDLTWNSIAGC-VENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKE  174 (228)
Q Consensus        96 ~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  174 (228)
                      ..|+.++.|+.||+++|++... .|..    |..+..|+.|+|++|.|. .+|..++.+++||.|.+..|.+- ++|. .
T Consensus        96 rgfgs~p~levldltynnl~e~~lpgn----ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk-e  168 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLPGN----FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK-E  168 (264)
T ss_pred             cccCCCchhhhhhccccccccccCCcc----hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH-H
Confidence            3455555555555555555432 2222    444555555566666665 67788899999999999999998 7998 9


Q ss_pred             hcCCCCCCEEEcccCCCCCCCChhhhcCCC---CCcEEECCCCc
Q 027116          175 LDSLSNLEELDMSDNAINNPVIPKDYRGLR---KLNTLHLGGTE  215 (228)
Q Consensus       175 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~---~L~~L~L~~N~  215 (228)
                      ++.+..|+.|++.+|+++- +|. .++.+.   +=+.+.+..|+
T Consensus       169 ig~lt~lrelhiqgnrl~v-lpp-el~~l~l~~~k~v~r~E~NP  210 (264)
T KOG0617|consen  169 IGDLTRLRELHIQGNRLTV-LPP-ELANLDLVGNKQVMRMEENP  210 (264)
T ss_pred             HHHHHHHHHHhcccceeee-cCh-hhhhhhhhhhHHHHhhhhCC
Confidence            9999999999999999998 787 665442   22344555555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.45  E-value=5.1e-14  Score=105.88  Aligned_cols=123  Identities=25%  Similarity=0.280  Sum_probs=47.3

Q ss_pred             cEEEEEcCCCCcccccccccCccccc-CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc-C
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFT-PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-G  151 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~  151 (228)
                      +.++|+|.+|.|+.+..       ++ .+.+|+.|++++|.|+....      +..+++|++|++++|.++.. .+.+ .
T Consensus        20 ~~~~L~L~~n~I~~Ie~-------L~~~l~~L~~L~Ls~N~I~~l~~------l~~L~~L~~L~L~~N~I~~i-~~~l~~   85 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN-------LGATLDKLEVLDLSNNQITKLEG------LPGLPRLKTLDLSNNRISSI-SEGLDK   85 (175)
T ss_dssp             ----------------S---------TT-TT--EEE-TTS--S--TT----------TT--EEE--SS---S--CHHHHH
T ss_pred             ccccccccccccccccc-------hhhhhcCCCEEECCCCCCccccC------ccChhhhhhcccCCCCCCcc-ccchHH
Confidence            56788888888854322       33 46788888888888887543      77788888888888888744 3333 3


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChh---hhcCCCCCcEEEC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPK---DYRGLRKLNTLHL  211 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~~l~~L~~L~L  211 (228)
                      .+++|++|++++|++...-.-..+..+++|+.|++.+|++.. .+.+   .+..+|+|+.||-
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence            578888888888888632111256778888888888888876 3331   3567788888764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.45  E-value=1.9e-14  Score=118.19  Aligned_cols=143  Identities=25%  Similarity=0.351  Sum_probs=114.3

Q ss_pred             CcEEEEEcCCCCcccccc------------------cccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcE
Q 027116           73 GRVIKLDLAQIRKWESAE------------------WYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKF  134 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~------------------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~  134 (228)
                      .-|+.+++++|++.+.+.                  ....+..++.+++|..|++++|.+...+.+     ++.+..|+.
T Consensus       388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-----~~~lv~Lq~  462 (565)
T KOG0472|consen  388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-----MGSLVRLQT  462 (565)
T ss_pred             cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-----hhhhhhhhe
Confidence            348999999999865332                  112344567788888888888888775544     777778888


Q ss_pred             EECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCC
Q 027116          135 LHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT  214 (228)
Q Consensus       135 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N  214 (228)
                      |+++.|+|. ..|+.+..+..++.+-.+.|++. .++++.+.++.+|..|||.+|.+.. +|. .++++.+|++|++.+|
T Consensus       463 LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNdlq~-IPp-~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  463 LNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNNDLQQ-IPP-ILGNMTNLRHLELDGN  538 (565)
T ss_pred             ecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCchhh-CCh-hhccccceeEEEecCC
Confidence            888888886 67777777777777777778886 7888779999999999999999998 999 9999999999999999


Q ss_pred             cCCcccCCccc
Q 027116          215 EIAMIDGSKVL  225 (228)
Q Consensus       215 ~i~~i~~~~~~  225 (228)
                      +|. .|.+.++
T Consensus       539 pfr-~Pr~~iL  548 (565)
T KOG0472|consen  539 PFR-QPRHQIL  548 (565)
T ss_pred             ccC-CCHHHHh
Confidence            999 5666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.44  E-value=1.9e-13  Score=102.84  Aligned_cols=114  Identities=31%  Similarity=0.379  Sum_probs=46.0

Q ss_pred             ccCCCCCCEEeCCCCCcccccCcccccccC-CCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENKGLDRLS-RLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD  176 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  176 (228)
                      +.+...+++|+|++|.|+....      ++ .+.+|+.|++++|.++..  +.+..+++|++|++++|.++ .+......
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~   85 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIEN------LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDK   85 (175)
T ss_dssp             ---------------------S--------TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHH
T ss_pred             cccccccccccccccccccccc------hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHH
Confidence            4455678999999999987533      55 588999999999999843  46888999999999999998 67652234


Q ss_pred             CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      .+++|+.|++++|+|.+.-.-..+..+++|+.|++.+|++++-+
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence            68999999999999987333236788999999999999998643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.40  E-value=8.6e-14  Score=113.99  Aligned_cols=46  Identities=20%  Similarity=0.251  Sum_probs=39.0

Q ss_pred             CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcc
Q 027116           71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENK  121 (228)
Q Consensus        71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  121 (228)
                      .+...++|+|..|+|..     +++..|+.+++|+.|||++|+|+.+.|.+
T Consensus        65 LP~~tveirLdqN~I~~-----iP~~aF~~l~~LRrLdLS~N~Is~I~p~A  110 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISS-----IPPGAFKTLHRLRRLDLSKNNISFIAPDA  110 (498)
T ss_pred             CCCcceEEEeccCCccc-----CChhhccchhhhceecccccchhhcChHh
Confidence            35678899999999865     66788999999999999999999877765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.38  E-value=3.9e-14  Score=122.24  Aligned_cols=118  Identities=31%  Similarity=0.360  Sum_probs=61.8

Q ss_pred             cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-------------------------ccccc
Q 027116           95 ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-------------------------SIFSS  149 (228)
Q Consensus        95 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-------------------------~~~~~  149 (228)
                      ...|.++..|-+||||+|++...+|.     ...+.+|++|+|++|.+..                         .+|..
T Consensus       143 n~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts  217 (1255)
T KOG0444|consen  143 NSLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS  217 (1255)
T ss_pred             chHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc
Confidence            34455566666666666666655554     4556666666666665432                         23333


Q ss_pred             cCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       150 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +..+.+|..+|+|.|.+. .+|. .+-++++|+.|+|++|+|+. +.. ......+|+.|++|.|+++.+|.
T Consensus       218 ld~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~ite-L~~-~~~~W~~lEtLNlSrNQLt~LP~  285 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITE-LNM-TEGEWENLETLNLSRNQLTVLPD  285 (1255)
T ss_pred             hhhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceee-eec-cHHHHhhhhhhccccchhccchH
Confidence            444445555555555554 4444 44555555555555555554 333 33334455555555555555554

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=1.4e-12  Score=116.87  Aligned_cols=107  Identities=26%  Similarity=0.400  Sum_probs=94.9

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE  182 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  182 (228)
                      .++.|+|++|.+++..|..    +..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++|.+|. .++.+++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence            3678999999999888876    88999999999999999999999999999999999999999988887 899999999


Q ss_pred             EEEcccCCCCCCCChhhhcCC-CCCcEEECCCCc
Q 027116          183 ELDMSDNAINNPVIPKDYRGL-RKLNTLHLGGTE  215 (228)
Q Consensus       183 ~L~L~~N~l~~~~p~~~~~~l-~~L~~L~L~~N~  215 (228)
                      .|+|++|.+++.+|. .+... .++..+++.+|.
T Consensus       494 ~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        494 ILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EEECcCCcccccCCh-HHhhccccCceEEecCCc
Confidence            999999999998888 66553 567788998886

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.31  E-value=1.5e-13  Score=118.64  Aligned_cols=136  Identities=28%  Similarity=0.373  Sum_probs=103.0

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ...++.|||++|++.+.      +..+..-+++-+|+||+|+|..++...    |-++..|-.||||+|++. .+|+.+.
T Consensus       102 l~dLt~lDLShNqL~Ev------P~~LE~AKn~iVLNLS~N~IetIPn~l----finLtDLLfLDLS~NrLe-~LPPQ~R  170 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLREV------PTNLEYAKNSIVLNLSYNNIETIPNSL----FINLTDLLFLDLSNNRLE-MLPPQIR  170 (1255)
T ss_pred             cccceeeecchhhhhhc------chhhhhhcCcEEEEcccCccccCCchH----HHhhHhHhhhccccchhh-hcCHHHH
Confidence            34677888888887542      234556677778888888887765554    677888888888888887 6677788


Q ss_pred             CCCCCCEEeccCcccc-------------------------CccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC
Q 027116          152 GLSSLKHLSLFHNRLN-------------------------GSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL  206 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~-------------------------~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L  206 (228)
                      .+.+|++|+|++|.+.                         ..+|. .+..+.+|..+|++.|.+.. +|+ .+.++++|
T Consensus       171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~-vPe-cly~l~~L  247 (1255)
T KOG0444|consen  171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPI-VPE-CLYKLRNL  247 (1255)
T ss_pred             HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCCc-chH-HHhhhhhh
Confidence            8888888888888653                         11343 55566778888888888887 787 78889999


Q ss_pred             cEEECCCCcCCcccC
Q 027116          207 NTLHLGGTEIAMIDG  221 (228)
Q Consensus       207 ~~L~L~~N~i~~i~~  221 (228)
                      +.|+||+|+|+++..
T Consensus       248 rrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  248 RRLNLSGNKITELNM  262 (1255)
T ss_pred             heeccCcCceeeeec
Confidence            999999999988754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.29  E-value=4.1e-14  Score=116.25  Aligned_cols=112  Identities=28%  Similarity=0.339  Sum_probs=75.7

Q ss_pred             CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116          101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN  180 (228)
Q Consensus       101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~  180 (228)
                      ++.|++||...|-++..+++     ++.+.+|+.|+|.+|++. ..| .|.++..|.+++++.|.+. .+|......+++
T Consensus       182 m~~L~~ld~~~N~L~tlP~~-----lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~  253 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPE-----LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNS  253 (565)
T ss_pred             HHHHHhcccchhhhhcCChh-----hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccc
Confidence            56666667666666655554     666777777777777776 445 5666666777777777766 566655556777


Q ss_pred             CCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          181 LEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       181 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      +.+||+.+|+++. .|+ .+..+++|++||+++|.|+.+|..
T Consensus       254 l~vLDLRdNklke-~Pd-e~clLrsL~rLDlSNN~is~Lp~s  293 (565)
T KOG0472|consen  254 LLVLDLRDNKLKE-VPD-EICLLRSLERLDLSNNDISSLPYS  293 (565)
T ss_pred             ceeeecccccccc-Cch-HHHHhhhhhhhcccCCccccCCcc
Confidence            7777777777776 666 666667777777777777766654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.28  E-value=2.5e-13  Score=108.08  Aligned_cols=133  Identities=26%  Similarity=0.250  Sum_probs=105.2

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++++||++|.|+.+.      +...-.|.++.|++|+|.+.....      +..+++|+.||||+|.++ .+...-..
T Consensus       284 q~LtelDLS~N~I~~iD------ESvKL~Pkir~L~lS~N~i~~v~n------La~L~~L~~LDLS~N~Ls-~~~Gwh~K  350 (490)
T KOG1259|consen  284 QELTELDLSGNLITQID------ESVKLAPKLRRLILSQNRIRTVQN------LAELPQLQLLDLSGNLLA-ECVGWHLK  350 (490)
T ss_pred             hhhhhccccccchhhhh------hhhhhccceeEEeccccceeeehh------hhhcccceEeecccchhH-hhhhhHhh
Confidence            35788899999885433      235667899999999999876544      677899999999999987 44444456


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +.+++.|.|+.|.+. .+.  .++.+-+|..||+++|+|...-....++++|-|+++.|.+|++..++.
T Consensus       351 LGNIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hcCEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            788899999999997 454  788888999999999999873333468899999999999999987664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.24  E-value=2.2e-10  Score=104.06  Aligned_cols=101  Identities=27%  Similarity=0.324  Sum_probs=66.6

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE  182 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  182 (228)
                      +|+.|++++|.++..+..     +  ..+|++|++++|+++ .+|..+.  .+|+.|++++|.+. .+|. .+.  .+|+
T Consensus       200 ~L~~L~Ls~N~LtsLP~~-----l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~-~l~--s~L~  265 (754)
T PRK15370        200 QITTLILDNNELKSLPEN-----L--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPE-RLP--SALQ  265 (754)
T ss_pred             CCcEEEecCCCCCcCChh-----h--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCCh-hHh--CCCC
Confidence            567777777777754432     2  246777788777776 4454443  36777777777776 6665 332  4677


Q ss_pred             EEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          183 ELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       183 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .|++++|+++. +|. .+.  ++|+.|++++|+|+.+|.
T Consensus       266 ~L~Ls~N~L~~-LP~-~l~--~sL~~L~Ls~N~Lt~LP~  300 (754)
T PRK15370        266 SLDLFHNKISC-LPE-NLP--EELRYLSVYDNSIRTLPA  300 (754)
T ss_pred             EEECcCCccCc-ccc-ccC--CCCcEEECCCCccccCcc
Confidence            88888887775 666 332  467788888887777664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.20  E-value=1.7e-12  Score=116.07  Aligned_cols=134  Identities=27%  Similarity=0.371  Sum_probs=103.8

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..+..|.+.+|.+++..     ...+.++++|+.|+|++|++...+...    +.++..|++|+||+|+++ .+|..+..
T Consensus       359 ~~Lq~LylanN~Ltd~c-----~p~l~~~~hLKVLhLsyNrL~~fpas~----~~kle~LeeL~LSGNkL~-~Lp~tva~  428 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSC-----FPVLVNFKHLKVLHLSYNRLNSFPASK----LRKLEELEELNLSGNKLT-TLPDTVAN  428 (1081)
T ss_pred             HHHHHHHHhcCcccccc-----hhhhccccceeeeeecccccccCCHHH----HhchHHhHHHhcccchhh-hhhHHHHh
Confidence            35667777788775322     245678889999999999988766555    888999999999999998 77888889


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      ++.|++|....|.+. .+|  .+..++.|+.+|++.|.++..... .-...++|++||+++|.=..++
T Consensus       429 ~~~L~tL~ahsN~l~-~fP--e~~~l~qL~~lDlS~N~L~~~~l~-~~~p~p~LkyLdlSGN~~l~~d  492 (1081)
T KOG0618|consen  429 LGRLHTLRAHSNQLL-SFP--ELAQLPQLKVLDLSCNNLSEVTLP-EALPSPNLKYLDLSGNTRLVFD  492 (1081)
T ss_pred             hhhhHHHhhcCCcee-ech--hhhhcCcceEEecccchhhhhhhh-hhCCCcccceeeccCCcccccc
Confidence            999999999999997 677  788999999999999998873322 2223379999999999743333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.15  E-value=1.9e-11  Score=76.17  Aligned_cols=60  Identities=30%  Similarity=0.559  Sum_probs=31.9

Q ss_pred             CCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116          155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       155 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i  216 (228)
                      +|++|++++|+++ .+|...|..+++|++|++++|.++. ++.+.|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence            4455555555554 4454455555555555555555554 3333555555555555555543

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.13  E-value=2.3e-11  Score=100.44  Aligned_cols=13  Identities=23%  Similarity=0.189  Sum_probs=7.2

Q ss_pred             CcEEEEEcCCCCc
Q 027116           73 GRVIKLDLAQIRK   85 (228)
Q Consensus        73 ~~v~~L~l~~n~l   85 (228)
                      .+++.|+++++.+
T Consensus        81 ~~L~~L~l~~~~~   93 (319)
T cd00116          81 CGLQELDLSDNAL   93 (319)
T ss_pred             CceeEEEccCCCC
Confidence            3555555555555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.12  E-value=2.9e-11  Score=99.79  Aligned_cols=89  Identities=25%  Similarity=0.210  Sum_probs=38.6

Q ss_pred             CCCCcEEECCCCccCccc----ccccCCCCCCCEEeccCccccCccChhhhc----CCCCCCEEEcccCCCCCC----CC
Q 027116          129 LNNLKFLHLDFNWFNNSI----FSSLGGLSSLKHLSLFHNRLNGSVDIKELD----SLSNLEELDMSDNAINNP----VI  196 (228)
Q Consensus       129 l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~----~l~~L~~L~L~~N~l~~~----~p  196 (228)
                      +++|++|++++|.+++..    +..+..+++|++|++++|.+++........    ..+.|+.|++++|.+++.    +.
T Consensus       192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  271 (319)
T cd00116         192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA  271 (319)
T ss_pred             CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence            345555555555544221    122334455555555555554211110001    124555555555555421    11


Q ss_pred             hhhhcCCCCCcEEECCCCcCCc
Q 027116          197 PKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       197 ~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      . .+..+++|+++++++|.++.
T Consensus       272 ~-~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         272 E-VLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             H-HHhcCCCccEEECCCCCCcH
Confidence            1 23344556666666665553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.11  E-value=6.2e-11  Score=73.81  Aligned_cols=59  Identities=32%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCcc
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNR  165 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  165 (228)
                      +|++|++++|+++..++..    |.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~----f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDS----FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTT----TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHH----HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444444544444443333    4444455555555544444444444444444444444443

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.10  E-value=1.7e-10  Score=104.73  Aligned_cols=104  Identities=22%  Similarity=0.331  Sum_probs=64.1

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL  181 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  181 (228)
                      .+|++|++++|+++..+..     +  ..+|+.|+|++|.+. .+|..+.  .+|++|++++|+++ .+|. .+.  ++|
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~-----l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~-~l~--~sL  285 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPAT-----L--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPE-NLP--EEL  285 (754)
T ss_pred             cCCCEEECCCCccccCChh-----h--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccc-ccC--CCC
Confidence            4788999999988864332     2  246777777777776 4555443  46777777777776 4654 232  367


Q ss_pred             CEEEcccCCCCCCCChhhhc-------------------CCCCCcEEECCCCcCCcccC
Q 027116          182 EELDMSDNAINNPVIPKDYR-------------------GLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       182 ~~L~L~~N~l~~~~p~~~~~-------------------~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +.|++++|++++ +|. .+.                   -.++|+.|++++|.++.+|.
T Consensus       286 ~~L~Ls~N~Lt~-LP~-~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~  342 (754)
T PRK15370        286 RYLSVYDNSIRT-LPA-HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA  342 (754)
T ss_pred             cEEECCCCcccc-Ccc-cchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh
Confidence            777777776665 443 111                   12456667777777666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.09  E-value=5.7e-12  Score=103.45  Aligned_cols=116  Identities=25%  Similarity=0.299  Sum_probs=104.7

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccC-ccccCccChhhhcCCCCC
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFH-NRLNGSVDIKELDSLSNL  181 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~l~~L  181 (228)
                      ....++|..|+|+.+++.+    |..+++|+.||||+|.|+.+.|.+|.++++|.+|-+-+ |+|+ .+|...|+++..|
T Consensus        68 ~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            4567999999999988887    99999999999999999999999999999988887666 9998 7999899999999


Q ss_pred             CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      +.|.+.-|++.- ++.+.|..++++..|.+-+|.+..|....|
T Consensus       143 qrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf  184 (498)
T KOG4237|consen  143 QRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTF  184 (498)
T ss_pred             HHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccc
Confidence            999999999998 666699999999999999999998887654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.06  E-value=3.8e-10  Score=102.37  Aligned_cols=136  Identities=21%  Similarity=0.164  Sum_probs=85.4

Q ss_pred             CcEEEEEcCCCCcccccccc-------cCcccccCC----CCCCEEeCCCCCcccccCccc-----------ccccC-CC
Q 027116           73 GRVIKLDLAQIRKWESAEWY-------MNASLFTPF----QQLESLDLTWNSIAGCVENKG-----------LDRLS-RL  129 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~-------~~~~~~~~l----~~L~~L~ls~n~l~~~~~~~~-----------~~~l~-~l  129 (228)
                      ..++.|++++|.+.......       +....+..+    .+|++|++++|+++..++...           +..+. ..
T Consensus       302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~  381 (788)
T PRK15387        302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP  381 (788)
T ss_pred             cccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCcccceehhhccccccCcccc
Confidence            56777777777776644310       000111111    368888888888876432100           00000 12


Q ss_pred             CCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116          130 NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL  209 (228)
Q Consensus       130 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L  209 (228)
                      .+|+.|++++|.+++ +|..   .++|+.|++++|.++ .+|. .   ..+|+.|++++|+++. +|. .+..+++|+.|
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~-l---~~~L~~L~Ls~NqLt~-LP~-sl~~L~~L~~L  450 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPM-L---PSGLLSLSVYRNQLTR-LPE-SLIHLSSETTV  450 (788)
T ss_pred             cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCc-c---hhhhhhhhhccCcccc-cCh-HHhhccCCCeE
Confidence            356777777777763 3432   256778888888887 5664 2   2467788888888886 888 78889999999


Q ss_pred             ECCCCcCCcc
Q 027116          210 HLGGTEIAMI  219 (228)
Q Consensus       210 ~L~~N~i~~i  219 (228)
                      ++++|+|+..
T Consensus       451 dLs~N~Ls~~  460 (788)
T PRK15387        451 NLEGNPLSER  460 (788)
T ss_pred             ECCCCCCCch
Confidence            9999998754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.04  E-value=8.9e-10  Score=100.02  Aligned_cols=35  Identities=11%  Similarity=0.118  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC  117 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  117 (228)
                      +++.|++.+|+++..+.         ..++|++|++++|+++..
T Consensus       223 ~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~LtsL  257 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSL  257 (788)
T ss_pred             CCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCcc
Confidence            56777777777754221         246777888888877764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.99  E-value=1.3e-11  Score=110.57  Aligned_cols=110  Identities=25%  Similarity=0.343  Sum_probs=80.9

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL  181 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  181 (228)
                      +.|+.|++.+|.+++..-+.    +.+.++|+.|+|++|++.......+.++..|++|+||+|+++ .+|. .+.+++.|
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~L  432 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGRL  432 (1081)
T ss_pred             HHHHHHHHhcCcccccchhh----hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhhh
Confidence            44556677777776543333    677788888888888877444446777778888888888887 6775 77778888


Q ss_pred             CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      ++|...+|.+.. +|  .+..+++|+.+|++.|+++.+-
T Consensus       433 ~tL~ahsN~l~~-fP--e~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  433 HTLRAHSNQLLS-FP--ELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             HHHhhcCCceee-ch--hhhhcCcceEEecccchhhhhh
Confidence            888888888776 66  5777889999999999887653

>PLN03210 Resistant to P

Probab=98.99  E-value=3.9e-09  Score=101.07  Aligned_cols=113  Identities=19%  Similarity=0.123  Sum_probs=71.6

Q ss_pred             ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS  177 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~  177 (228)
                      +..+++|+.|+++++.....+|.     +..+++|+.|++++|.....+|..+..+++|++|++++|.....+|. .+ +
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~  702 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-N  702 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-C
Confidence            45566777777766543333443     56677777777777655556666777777777777776543335664 22 5


Q ss_pred             CCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       178 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +++|+.|++++|.....+|.    ...+|++|++++|.++.+|.
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             CCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccc
Confidence            67777777777654443443    23567788888888777765

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.96  E-value=6.3e-11  Score=101.42  Aligned_cols=133  Identities=28%  Similarity=0.303  Sum_probs=104.6

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ...++.+||+.|+++....      .+. .--|+.|.+++|+++..+++     ++....|..||.+.|.+. .+|..++
T Consensus       120 L~~lt~l~ls~NqlS~lp~------~lC-~lpLkvli~sNNkl~~lp~~-----ig~~~tl~~ld~s~nei~-slpsql~  186 (722)
T KOG0532|consen  120 LEALTFLDLSSNQLSHLPD------GLC-DLPLKVLIVSNNKLTSLPEE-----IGLLPTLAHLDVSKNEIQ-SLPSQLG  186 (722)
T ss_pred             hhHHHHhhhccchhhcCCh------hhh-cCcceeEEEecCccccCCcc-----cccchhHHHhhhhhhhhh-hchHHhh
Confidence            3456777888887753221      122 23478888888888776665     677888888888888887 6777788


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      ++.+|+.|.+..|++. .+|+ .+..+ .|..||++.|++.. +|. .|.+++.|++|-|.+|++++-|+.
T Consensus       187 ~l~slr~l~vrRn~l~-~lp~-El~~L-pLi~lDfScNkis~-iPv-~fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLE-DLPE-ELCSL-PLIRLDFSCNKISY-LPV-DFRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             hHHHHHHHHHhhhhhh-hCCH-HHhCC-ceeeeecccCceee-cch-hhhhhhhheeeeeccCCCCCChHH
Confidence            8888999999999887 6887 66665 48999999999998 999 999999999999999999986653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.91  E-value=5e-10  Score=95.49  Aligned_cols=132  Identities=33%  Similarity=0.436  Sum_probs=71.3

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCC-CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQ-QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      .++.+++.+|.+.+...      ....+. +|+.|++++|++...+..     +..+++|+.|++++|+++ .+|...+.
T Consensus       117 ~l~~L~l~~n~i~~i~~------~~~~~~~nL~~L~l~~N~i~~l~~~-----~~~l~~L~~L~l~~N~l~-~l~~~~~~  184 (394)
T COG4886         117 NLTSLDLDNNNITDIPP------LIGLLKSNLKELDLSDNKIESLPSP-----LRNLPNLKNLDLSFNDLS-DLPKLLSN  184 (394)
T ss_pred             ceeEEecCCcccccCcc------ccccchhhcccccccccchhhhhhh-----hhccccccccccCCchhh-hhhhhhhh
Confidence            46777777777654332      122332 666666666666654322     455666666666666665 33333335


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccC-----------------------CCCCCCChhhhcCCCCCcEE
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN-----------------------AINNPVIPKDYRGLRKLNTL  209 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N-----------------------~l~~~~p~~~~~~l~~L~~L  209 (228)
                      .++|+.|++++|+++ .+|. .......|+.+.+++|                       ++.. ++. .+..++++++|
T Consensus       185 ~~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~-~~~~l~~l~~L  260 (394)
T COG4886         185 LSNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPE-SIGNLSNLETL  260 (394)
T ss_pred             hhhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccc-hhcccccccee
Confidence            555556666666555 4443 2222233444444444                       3333 233 55566677777


Q ss_pred             ECCCCcCCcccC
Q 027116          210 HLGGTEIAMIDG  221 (228)
Q Consensus       210 ~L~~N~i~~i~~  221 (228)
                      ++++|++++++.
T Consensus       261 ~~s~n~i~~i~~  272 (394)
T COG4886         261 DLSNNQISSISS  272 (394)
T ss_pred             cccccccccccc
Confidence            777777777764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=3.2e-10  Score=90.59  Aligned_cols=110  Identities=28%  Similarity=0.313  Sum_probs=87.9

Q ss_pred             CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCC
Q 027116          100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLS  179 (228)
Q Consensus       100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~  179 (228)
                      ..+.|+.+|+|+|.|+.....     ..-.|.++.|++|+|.+...  ..++.+++|+.||||+|.++ ++.. .-..+-
T Consensus       282 TWq~LtelDLS~N~I~~iDES-----vKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLG  352 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDES-----VKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVG-WHLKLG  352 (490)
T ss_pred             hHhhhhhccccccchhhhhhh-----hhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhh-hHhhhc
Confidence            346788999999999865443     56688999999999999733  44888999999999999997 5543 555677


Q ss_pred             CCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          180 NLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       180 ~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +.+.|.|+.|.|.+ + . .+.++-+|..||+++|+|.+++.
T Consensus       353 NIKtL~La~N~iE~-L-S-GL~KLYSLvnLDl~~N~Ie~lde  391 (490)
T KOG1259|consen  353 NIKTLKLAQNKIET-L-S-GLRKLYSLVNLDLSSNQIEELDE  391 (490)
T ss_pred             CEeeeehhhhhHhh-h-h-hhHhhhhheeccccccchhhHHH
Confidence            88999999999876 2 3 56778899999999999987653

>PLN03210 Resistant to P

Probab=98.84  E-value=3.5e-08  Score=94.66  Aligned_cols=106  Identities=21%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116          101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN  180 (228)
Q Consensus       101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~  180 (228)
                      ..+|+.|++++|.+......     +..+++|+.|+|+++.....+|. +..+++|++|++++|.....+|. .+..+++
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~  682 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNK  682 (1153)
T ss_pred             ccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCC
Confidence            46777778877777654332     56677888888877654445553 66777888888887765556776 7778888


Q ss_pred             CCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCc
Q 027116          181 LEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE  215 (228)
Q Consensus       181 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~  215 (228)
                      |+.|++++|.....+|. .+ ++++|++|++++|.
T Consensus       683 L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        683 LEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCC
Confidence            88888887644444666 33 67788888888764

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.83  E-value=2.2e-10  Score=98.15  Aligned_cols=116  Identities=24%  Similarity=0.353  Sum_probs=100.6

Q ss_pred             cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhh
Q 027116           95 ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKE  174 (228)
Q Consensus        95 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  174 (228)
                      +..+.++..|++++++.|+++..+..     ++.++ |+.|-+++|+++ .+|+.++.+++|..||.+.|.+. .+|. .
T Consensus       114 p~~i~~L~~lt~l~ls~NqlS~lp~~-----lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slps-q  184 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSNQLSHLPDG-----LCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPS-Q  184 (722)
T ss_pred             chhhhhhhHHHHhhhccchhhcCChh-----hhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchH-H
Confidence            44567888999999999999887665     45454 899999999998 78888999999999999999998 7888 8


Q ss_pred             hcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          175 LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       175 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      ++.+.+|+.|++..|++.. +|. .+..+ .|..||++.|+|+.||..
T Consensus       185 l~~l~slr~l~vrRn~l~~-lp~-El~~L-pLi~lDfScNkis~iPv~  229 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNHLED-LPE-ELCSL-PLIRLDFSCNKISYLPVD  229 (722)
T ss_pred             hhhHHHHHHHHHhhhhhhh-CCH-HHhCC-ceeeeecccCceeecchh
Confidence            9999999999999999998 888 77754 588999999999999865

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.78  E-value=8.7e-11  Score=103.21  Aligned_cols=128  Identities=26%  Similarity=0.334  Sum_probs=95.0

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccc-ccCC
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGG  152 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~  152 (228)
                      .+...+.+.|.+...      .+.+.-++.++.|+|++|+++....      +..+++|++|||++|.+. .+|. ...+
T Consensus       165 ~L~~a~fsyN~L~~m------D~SLqll~ale~LnLshNk~~~v~~------Lr~l~~LkhLDlsyN~L~-~vp~l~~~g  231 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLM------DESLQLLPALESLNLSHNKFTKVDN------LRRLPKLKHLDLSYNCLR-HVPQLSMVG  231 (1096)
T ss_pred             hHhhhhcchhhHHhH------HHHHHHHHHhhhhccchhhhhhhHH------HHhcccccccccccchhc-cccccchhh
Confidence            345566777776321      2346668889999999999987652      788999999999999997 3443 2333


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      + +|+.|.+++|.++ ++-  .+.++.+|+.||+++|-+.+.-.-..+..+..|+.|+|.+|++--
T Consensus       232 c-~L~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  232 C-KLQLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             h-hheeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            3 4999999999998 555  788899999999999988873222245667788999999998754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=2.5e-09  Score=89.15  Aligned_cols=144  Identities=22%  Similarity=0.193  Sum_probs=80.4

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccccc----------------------ccCCCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLD----------------------RLSRLN  130 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~----------------------~l~~l~  130 (228)
                      .+|+.|||++|-+.....   .......+++|+.|+++.|.+.-........                      .+..+|
T Consensus       146 ~~v~~LdLS~NL~~nw~~---v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFP---VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             CcceeecchhhhHHhHHH---HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            467788888877644222   2234456777777777777665432221100                      022344


Q ss_pred             CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCC-CChh----hhcCCC
Q 027116          131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNP-VIPK----DYRGLR  204 (228)
Q Consensus       131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~-~p~~----~~~~l~  204 (228)
                      +|+.|+|..|.....-.....-+..|++|||++|++. ..+. ...+.++.|+.|+++.+.+.+. +|+.    -...++
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            5555555555321111122334566777777777776 2331 1566777788888887777652 1220    124567


Q ss_pred             CCcEEECCCCcCCccc
Q 027116          205 KLNTLHLGGTEIAMID  220 (228)
Q Consensus       205 ~L~~L~L~~N~i~~i~  220 (228)
                      +|++|++..|+|.+.+
T Consensus       302 kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  302 KLEYLNISENNIRDWR  317 (505)
T ss_pred             cceeeecccCcccccc
Confidence            8888888888875543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.70  E-value=2.4e-08  Score=57.40  Aligned_cols=39  Identities=38%  Similarity=0.750  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhhCCC-CC-CCCCCCCCCC-CCCCceeeeEEEC
Q 027116           29 EQERSALLQIKHFFNG-DQ-HLQNWVDDEN-YSDCCQWERVECN   69 (228)
Q Consensus        29 ~~~~~~l~~~~~~~~~-~~-~~~~W~~~~~-~~~~c~~~gv~c~   69 (228)
                      ++|++||++||+.+.+ +. .+.+|.  .. ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence            6899999999999985 53 899996  33 3799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.69  E-value=1.2e-08  Score=87.09  Aligned_cols=125  Identities=37%  Similarity=0.416  Sum_probs=99.5

Q ss_pred             EEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCC-CCcEEECCCCccCcccccccCCCCC
Q 027116           77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN-NLKFLHLDFNWFNNSIFSSLGGLSS  155 (228)
Q Consensus        77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~  155 (228)
                      .++++.+.+..      .......++.++.|++.+|.++...+.     ..... +|+.|++++|.+. .+|..+..+++
T Consensus        97 ~l~~~~~~~~~------~~~~~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~  164 (394)
T COG4886          97 SLDLNLNRLRS------NISELLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIE-SLPSPLRNLPN  164 (394)
T ss_pred             eeecccccccc------CchhhhcccceeEEecCCcccccCccc-----cccchhhcccccccccchh-hhhhhhhcccc
Confidence            47777776521      122345568899999999999987774     45553 9999999999998 56667899999


Q ss_pred             CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      |+.|++++|+++ .+|. ..+..+.|+.|++++|++.. +|. .......|+.|.+++|++.
T Consensus       165 L~~L~l~~N~l~-~l~~-~~~~~~~L~~L~ls~N~i~~-l~~-~~~~~~~L~~l~~~~N~~~  222 (394)
T COG4886         165 LKNLDLSFNDLS-DLPK-LLSNLSNLNNLDLSGNKISD-LPP-EIELLSALEELDLSNNSII  222 (394)
T ss_pred             ccccccCCchhh-hhhh-hhhhhhhhhheeccCCcccc-Cch-hhhhhhhhhhhhhcCCcce
Confidence            999999999998 7885 55588999999999999998 887 5556667999999999533

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2.6e-09  Score=89.00  Aligned_cols=112  Identities=23%  Similarity=0.163  Sum_probs=70.8

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccc-c
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS-L  150 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~  150 (228)
                      ...++++.|.+......|.    .+....+++++.|||+.|-+....+-.  .-...+++|+.|+++.|++....... -
T Consensus       120 ~kkL~~IsLdn~~V~~~~~----~~~~k~~~~v~~LdLS~NL~~nw~~v~--~i~eqLp~Le~LNls~Nrl~~~~~s~~~  193 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGI----EEYSKILPNVRDLDLSRNLFHNWFPVL--KIAEQLPSLENLNLSSNRLSNFISSNTT  193 (505)
T ss_pred             HHhhhheeecCccccccch----hhhhhhCCcceeecchhhhHHhHHHHH--HHHHhcccchhcccccccccCCccccch
Confidence            3567778888887754443    145678999999999999877644321  11567999999999999986433322 1


Q ss_pred             CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccC
Q 027116          151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN  189 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N  189 (228)
                      ..+++|+.|.++.|+++..--......+|+|+.|+|..|
T Consensus       194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            245677777777777762211112334445555555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.65  E-value=1.1e-09  Score=78.02  Aligned_cols=87  Identities=22%  Similarity=0.226  Sum_probs=43.1

Q ss_pred             CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCC
Q 027116          100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLS  179 (228)
Q Consensus       100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~  179 (228)
                      ...+|+..++++|.+...++..    -..++.++.|++++|.++ .+|+.+..++.|+.|++++|.+. ..|. .+..+.
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kf----t~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~L~  123 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKF----TIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAPLI  123 (177)
T ss_pred             CCceEEEEecccchhhhCCHHH----hhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHHHH
Confidence            3344555555555555443331    223345555555555555 34444555555555555555554 3443 344455


Q ss_pred             CCCEEEcccCCCCC
Q 027116          180 NLEELDMSDNAINN  193 (228)
Q Consensus       180 ~L~~L~L~~N~l~~  193 (228)
                      ++..|+..+|.+..
T Consensus       124 ~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  124 KLDMLDSPENARAE  137 (177)
T ss_pred             hHHHhcCCCCcccc
Confidence            55555555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.65  E-value=5.3e-08  Score=73.69  Aligned_cols=126  Identities=25%  Similarity=0.186  Sum_probs=81.5

Q ss_pred             EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116           76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS  155 (228)
Q Consensus        76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  155 (228)
                      ++++|.+..+..++..      -.-+.....+||++|.+.....      |..++.|.+|.+++|.|+.+.|.--.-+++
T Consensus        22 ~e~~LR~lkip~ienl------g~~~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~   89 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENL------GATLDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPN   89 (233)
T ss_pred             cccccccccccchhhc------cccccccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccc
Confidence            4566777666433221      0113455677888888765443      777888888888888888665554445677


Q ss_pred             CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh--hhhcCCCCCcEEECCC
Q 027116          156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP--KDYRGLRKLNTLHLGG  213 (228)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~l~~L~~L~L~~  213 (228)
                      |..|.|.+|++...-....+..+|.|++|.+-+|.++..--.  ..+..+++|+.||..+
T Consensus        90 l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   90 LKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            888888888876211112567778888888888887762111  1456778888888755

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.64  E-value=3.3e-08  Score=56.99  Aligned_cols=39  Identities=44%  Similarity=0.674  Sum_probs=22.4

Q ss_pred             CCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          180 NLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       180 ~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      +|++|++++|+|++ +|. .+.++++|++|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~-l~~-~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPP-ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SS-HGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcc-cCc-hHhCCCCCCEEEecCCCCCCCc
Confidence            45666666666665 554 5666666666666666666554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.61  E-value=1.2e-08  Score=87.72  Aligned_cols=110  Identities=37%  Similarity=0.476  Sum_probs=49.5

Q ss_pred             cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116           99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL  178 (228)
Q Consensus        99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  178 (228)
                      ..+.+|+.|++.+|.|......     +..+++|++|++++|.|+..  ..+..++.|+.|++++|.++ .+.  .+..+
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~--~~~~l  161 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DIS--GLESL  161 (414)
T ss_pred             ccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hcc--CCccc
Confidence            3444555555555555443321     23345555555555555432  12334444555555555554 233  33334


Q ss_pred             CCCCEEEcccCCCCCCCChhh-hcCCCCCcEEECCCCcCCccc
Q 027116          179 SNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p~~~-~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      +.|+.+++++|.+.. +.. . ...+.+++.+++.+|.+..+.
T Consensus       162 ~~L~~l~l~~n~i~~-ie~-~~~~~~~~l~~l~l~~n~i~~i~  202 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIVD-IEN-DELSELISLEELDLGGNSIREIE  202 (414)
T ss_pred             hhhhcccCCcchhhh-hhh-hhhhhccchHHHhccCCchhccc
Confidence            455555555555544 222 1 234444444555555444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.55  E-value=1.5e-08  Score=82.31  Aligned_cols=146  Identities=20%  Similarity=0.165  Sum_probs=109.4

Q ss_pred             CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc----c
Q 027116           71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS----I  146 (228)
Q Consensus        71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~  146 (228)
                      ....++.+...+|++...|... ....|...+.|+.+.++.|.|...........+..+++|++|||.+|.|+..    +
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~-~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATA-LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCcceEEEEeeccccccccHHH-HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            3567899999999997666543 3456778899999999999987544434445588899999999999999743    3


Q ss_pred             ccccCCCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCCCCC---hhhhcCCCCCcEEECCCCcCC
Q 027116          147 FSSLGGLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINNPVI---PKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       147 ~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      ...+..+++|++|++++|.+...    +-...-...|+|++|.+.+|.|+..-.   ...+...+.|+.|+|++|.+.
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            34677889999999999999733    111123447899999999999985211   113456789999999999994

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.48  E-value=3.4e-08  Score=84.89  Aligned_cols=111  Identities=30%  Similarity=0.409  Sum_probs=92.3

Q ss_pred             cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116           99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL  178 (228)
Q Consensus        99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  178 (228)
                      ..+..++.+++..|.+......     +..+++|+.|++.+|.+... ...+..+++|++|++++|.|+ .+.  .+..+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~-----l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~--~l~~l  139 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNH-----LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLE--GLSTL  139 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcc-----cccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-ccc--chhhc
Confidence            4567777888999988763332     78899999999999999843 333788999999999999998 565  67888


Q ss_pred             CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +.|+.|++++|.|.. +.  .+..++.|+.+++++|+++.++.
T Consensus       140 ~~L~~L~l~~N~i~~-~~--~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  140 TLLKELNLSGNLISD-IS--GLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             cchhhheeccCcchh-cc--CCccchhhhcccCCcchhhhhhh
Confidence            889999999999997 43  46669999999999999999887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.46  E-value=3.1e-08  Score=80.50  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=65.7

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcc---------cccccCCCCCCcEEECCCCccC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENK---------GLDRLSRLNNLKFLHLDFNWFN  143 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~---------~~~~l~~l~~L~~L~Ls~n~l~  143 (228)
                      ++++.||||+|-+...|...+ ...++.+..|+.|.+.+|.+.......         .......-++|+++..++|++.
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l-~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGL-EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CceeEeeccccccCccchHHH-HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            389999999998865443211 234566778888888888775322211         0111345567777777777764


Q ss_pred             cc----cccccCCCCCCCEEeccCccccCc---cChhhhcCCCCCCEEEcccCCCC
Q 027116          144 NS----IFSSLGGLSSLKHLSLFHNRLNGS---VDIKELDSLSNLEELDMSDNAIN  192 (228)
Q Consensus       144 ~~----~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~~l~~L~~L~L~~N~l~  192 (228)
                      ..    +...|...+.|+.+.++.|.+...   +-...+..+++|++|||.+|-++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            32    112344445555555555555311   11124455555555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.44  E-value=1.6e-07  Score=87.10  Aligned_cols=108  Identities=23%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             CCCCCEEeCCCCC--cccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116          101 FQQLESLDLTWNS--IAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL  178 (228)
Q Consensus       101 l~~L~~L~ls~n~--l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  178 (228)
                      .+.|++|-+..|.  +.......    |..++.|++|||++|.--+.+|..++.+-+|++|++++..++ .+|. .+.++
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~f----f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~L  617 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEF----FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNL  617 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHH----HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHH
Confidence            3467777777775  33333322    667888888888887766688888888888888888888887 7887 88888


Q ss_pred             CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCc
Q 027116          179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE  215 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~  215 (228)
                      ..|.+||+..+.....++. ....+++|++|.+..-.
T Consensus       618 k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             Hhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence            8888888888776554444 66668888888775543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.39  E-value=3.2e-07  Score=52.87  Aligned_cols=37  Identities=38%  Similarity=0.634  Sum_probs=16.9

Q ss_pred             CCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116          155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       155 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      +|++|++++|+++ .+|+ .++++++|+.|++++|+|++
T Consensus         2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCCC
Confidence            3445555555554 3443 34555555555555555443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=1.6e-07  Score=75.28  Aligned_cols=139  Identities=21%  Similarity=0.253  Sum_probs=80.9

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccc-ccC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLG  151 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~  151 (228)
                      .+|.++||.+|.|+....   ....+..+|+|++|+++.|++...+...    -....+|++|-|.+..+...... .+.
T Consensus        71 ~~v~elDL~~N~iSdWse---I~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSE---IGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             hhhhhhhcccchhccHHH---HHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence            467788888887754332   2345677888888888888876654431    12345566666655555432222 234


Q ss_pred             CCCCCCEEeccCccc-----------------------------------------------------cCccChhhhcCC
Q 027116          152 GLSSLKHLSLFHNRL-----------------------------------------------------NGSVDIKELDSL  178 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l-----------------------------------------------------~~~~p~~~~~~l  178 (228)
                      .+|.+++|+++.|.+                                                     ...-.......+
T Consensus       144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            455555555555522                                                     111111123345


Q ss_pred             CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116          179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      |.+..|+|+.|+|.+....+.+.++++|..|.+++|++.+
T Consensus       224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            5566677777777764444467788888888888888754

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.29  E-value=4.6e-08  Score=69.77  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=88.0

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.+++++|.+.+...     .....++.++.|++++|.+...+.+     +..++.|+.|+++.|.+. ..|..+.
T Consensus        52 ~~el~~i~ls~N~fk~fp~-----kft~kf~t~t~lNl~~neisdvPeE-----~Aam~aLr~lNl~~N~l~-~~p~vi~  120 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPK-----KFTIKFPTATTLNLANNEISDVPEE-----LAAMPALRSLNLRFNPLN-AEPRVIA  120 (177)
T ss_pred             CceEEEEecccchhhhCCH-----HHhhccchhhhhhcchhhhhhchHH-----HhhhHHhhhcccccCccc-cchHHHH
Confidence            5689999999999976433     3445677899999999999886654     888999999999999998 7778888


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP  197 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~  197 (228)
                      .+.+|..|+..+|.+. ++|- .+-.-..+-..++.++.+.+.-+.
T Consensus       121 ~L~~l~~Lds~~na~~-eid~-dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  121 PLIKLDMLDSPENARA-EIDV-DLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             HHHhHHHhcCCCCccc-cCcH-HHhccccHHHHHhcCCcccccCcc
Confidence            8999999999999997 7887 343333444456677777764443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=2.3e-08  Score=88.39  Aligned_cols=106  Identities=26%  Similarity=0.334  Sum_probs=84.3

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE  182 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  182 (228)
                      .|...++++|.+......     +.-++.++.|+|++|+++..  ..+..+++|++|||++|.+. .+|...-..+ +|.
T Consensus       165 ~L~~a~fsyN~L~~mD~S-----Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDES-----LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQ  235 (1096)
T ss_pred             hHhhhhcchhhHHhHHHH-----HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hhe
Confidence            466677888887654433     67789999999999999854  37889999999999999998 7775333333 499


Q ss_pred             EEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          183 ELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       183 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      .|.+.+|.++. + . .+.++.+|+.||++.|-|.+..
T Consensus       236 ~L~lrnN~l~t-L-~-gie~LksL~~LDlsyNll~~hs  270 (1096)
T KOG1859|consen  236 LLNLRNNALTT-L-R-GIENLKSLYGLDLSYNLLSEHS  270 (1096)
T ss_pred             eeeecccHHHh-h-h-hHHhhhhhhccchhHhhhhcch
Confidence            99999999986 2 2 5778999999999999887644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.07  E-value=8.1e-06  Score=62.04  Aligned_cols=109  Identities=24%  Similarity=0.198  Sum_probs=79.8

Q ss_pred             CCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCE
Q 027116          104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEE  183 (228)
Q Consensus       104 L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~  183 (228)
                      =+.+++.+.++.....-     -....+...+||++|.+-.  -..|..++.|.+|.+.+|+|+ .+.+..-..+++|..
T Consensus        21 e~e~~LR~lkip~ienl-----g~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~   92 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENL-----GATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKT   92 (233)
T ss_pred             ccccccccccccchhhc-----cccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccce
Confidence            34567777666442221     1235577889999999852  246888999999999999999 566634455688999


Q ss_pred             EEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          184 LDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       184 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      |.|.+|.|.....-.-+..+++|++|.+-+|+++.-.
T Consensus        93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~  129 (233)
T KOG1644|consen   93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK  129 (233)
T ss_pred             EEecCcchhhhhhcchhccCCccceeeecCCchhccc
Confidence            9999999886322224678899999999999987643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.98  E-value=4.2e-06  Score=65.86  Aligned_cols=105  Identities=25%  Similarity=0.277  Sum_probs=67.1

Q ss_pred             cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC--ccCcccccccCCCCCCCEEeccCccccC--ccChhh
Q 027116           99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN--WFNNSIFSSLGGLSSLKHLSLFHNRLNG--SVDIKE  174 (228)
Q Consensus        99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~  174 (228)
                      ..+..|+.+.+.+..++....      +..+++|+.|.++.|  .+.+-.+.....+++|+++++++|++..  +++  .
T Consensus        40 d~~~~le~ls~~n~gltt~~~------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--p  111 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTN------FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--P  111 (260)
T ss_pred             ccccchhhhhhhccceeeccc------CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--h
Confidence            444556666666666554333      666778888888888  5544444444455888888888888761  233  4


Q ss_pred             hcCCCCCCEEEcccCCCCCCCCh---hhhcCCCCCcEEECC
Q 027116          175 LDSLSNLEELDMSDNAINNPVIP---KDYRGLRKLNTLHLG  212 (228)
Q Consensus       175 ~~~l~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~L~  212 (228)
                      +..+.+|..|++.+|..+. ...   ..|.-+++|++|+-.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence            5566777888888887766 322   146667777777643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.93  E-value=3.4e-05  Score=54.93  Aligned_cols=118  Identities=19%  Similarity=0.310  Sum_probs=55.3

Q ss_pred             cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhh
Q 027116           95 ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKE  174 (228)
Q Consensus        95 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  174 (228)
                      ...|....+|+.+.+.. .++......    |..+++|+.+.+..+ +.......|..+++++.+.+.. .+. .++...
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~----F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~   76 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENA----FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNA   76 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTT----TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTT
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhh----ccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccc
Confidence            34566666777777664 455444443    666667777777664 5434444566666677777754 333 344445


Q ss_pred             hcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          175 LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       175 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      +..+++|+.+++..+ +.. ++...|.+. .|+.+.+.. .++.|+...|
T Consensus        77 F~~~~~l~~i~~~~~-~~~-i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F  122 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN-ITE-IGSSSFSNC-NLKEINIPS-NITKIEENAF  122 (129)
T ss_dssp             TTT-TTECEEEETTT--BE-EHTTTTTT--T--EEE-TT-B-SS----GG
T ss_pred             ccccccccccccCcc-ccE-EchhhhcCC-CceEEEECC-CccEECCccc
Confidence            666777777777654 443 444356665 677777664 5666665554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.92  E-value=7.1e-06  Score=76.33  Aligned_cols=109  Identities=24%  Similarity=0.219  Sum_probs=89.0

Q ss_pred             cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCc--cCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116           99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW--FNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD  176 (228)
Q Consensus        99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  176 (228)
                      .+....+...+-+|.+......      ...+.|++|-+.+|.  +.....+.|..++.|+.|||++|.-.+.+|. .++
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~~~------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~  592 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIAGS------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIG  592 (889)
T ss_pred             cchhheeEEEEeccchhhccCC------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHh
Confidence            3345667777777877654442      345689999999996  5544555688999999999999877678998 999


Q ss_pred             CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116          177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i  216 (228)
                      .+-+|++|++++..+.. +|. .+.++..|.+|++..+..
T Consensus       593 ~Li~LryL~L~~t~I~~-LP~-~l~~Lk~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  593 ELVHLRYLDLSDTGISH-LPS-GLGNLKKLIYLNLEVTGR  630 (889)
T ss_pred             hhhhhhcccccCCCccc-cch-HHHHHHhhheeccccccc
Confidence            99999999999999997 999 999999999999998764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.86  E-value=1.7e-05  Score=63.14  Aligned_cols=120  Identities=20%  Similarity=0.174  Sum_probs=70.3

Q ss_pred             ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccc-------------cCCCCCCCEEeccCc
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS-------------LGGLSSLKHLSLFHN  164 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~~L~Ls~n  164 (228)
                      +.++++|+..+||.|.+....++..-+.++.-..|++|.+++|.+....-.-             ...-|.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            4567788888888888776666554444667777888888887764221111             123466777777777


Q ss_pred             cccCccCh----hhhcCCCCCCEEEcccCCCCCCCCh----hhhcCCCCCcEEECCCCcCCc
Q 027116          165 RLNGSVDI----KELDSLSNLEELDMSDNAINNPVIP----KDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       165 ~l~~~~p~----~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      ++. ..+.    ..+..-..|..+.+..|.|.-.-..    ..+..+.+|+.||+..|-++.
T Consensus       168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            765 2221    1223334566666666666532111    122345677777777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=2.5e-05  Score=70.98  Aligned_cols=136  Identities=22%  Similarity=0.227  Sum_probs=77.8

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.||++|...-..+ | . ...-.-+|.|+.|.+++-.+....   ......++++|..||+|+.+++..  .+++.
T Consensus       122 ~nL~~LdI~G~~~~s~~-W-~-~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNG-W-P-KKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISR  193 (699)
T ss_pred             HhhhhcCccccchhhcc-H-H-HHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhc
Confidence            35666666665442111 1 0 011233677777777775553321   011145677788888888777643  56777


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh------hhhcCCCCCcEEECCCCcCC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP------KDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~------~~~~~l~~L~~L~L~~N~i~  217 (228)
                      +++|+.|.+.+=.+...-.-..+.++++|++||+|..+... .+.      +.-..+|+|+.||.|++.++
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence            77777777766666521111256677888888887766554 221      01234678888888876554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=7.5e-07  Score=70.82  Aligned_cols=101  Identities=21%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCC
Q 027116          101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLS  179 (228)
Q Consensus       101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~  179 (228)
                      +.+.+.|++-++.+.++.-      ...++.|++|.||-|+|+..  +.+..+++|++|+|..|.|.+ +.+ ..+.++|
T Consensus        18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHHHH------HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCc
Confidence            3444555555555544321      34456666666666666533  234555666666666666652 221 1455666


Q ss_pred             CCCEEEcccCCCCCCCChh----hhcCCCCCcEEE
Q 027116          180 NLEELDMSDNAINNPVIPK----DYRGLRKLNTLH  210 (228)
Q Consensus       180 ~L~~L~L~~N~l~~~~p~~----~~~~l~~L~~L~  210 (228)
                      +|+.|+|..|.-.+.-+..    .+.-+|+|+.||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666666666655533321    234456665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.64  E-value=4.3e-05  Score=60.25  Aligned_cols=91  Identities=23%  Similarity=0.353  Sum_probs=66.3

Q ss_pred             CCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCc--cccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCC
Q 027116          127 SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHN--RLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLR  204 (228)
Q Consensus       127 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~  204 (228)
                      ..+..|+.|.+.+..++..  ..+..+++|+.|.++.|  ++.+.++. ....+|+|+++++++|+++..-.-..+..+.
T Consensus        40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhc
Confidence            3455666667777666532  45788899999999999  66656665 5566699999999999998521112356677


Q ss_pred             CCcEEECCCCcCCccc
Q 027116          205 KLNTLHLGGTEIAMID  220 (228)
Q Consensus       205 ~L~~L~L~~N~i~~i~  220 (228)
                      +|..|++.+|..+...
T Consensus       117 nL~~Ldl~n~~~~~l~  132 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLD  132 (260)
T ss_pred             chhhhhcccCCccccc
Confidence            8999999999877643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=1.5e-05  Score=64.19  Aligned_cols=112  Identities=28%  Similarity=0.231  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCC
Q 027116           75 VIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS  154 (228)
Q Consensus        75 v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  154 (228)
                      ..-+-+.+..|...|.....   -...++++.+||.+|.|+....-.  ..+.++|.|++|+++.|.+...+-..-..+.
T Consensus        47 ~ellvln~~~id~~gd~~~~---~~~~~~v~elDL~~N~iSdWseI~--~ile~lP~l~~LNls~N~L~s~I~~lp~p~~  121 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLF---GSSVTDVKELDLTGNLISDWSEIG--AILEQLPALTTLNLSCNSLSSDIKSLPLPLK  121 (418)
T ss_pred             hhhheecCCCCCcchhHHHH---HHHhhhhhhhhcccchhccHHHHH--HHHhcCccceEeeccCCcCCCccccCccccc
Confidence            33456667777666653221   134678999999999998653211  1167899999999999999854433224677


Q ss_pred             CCCEEeccCccccCccChhhhcCCCCCCEEEcccCCC
Q 027116          155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI  191 (228)
Q Consensus       155 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l  191 (228)
                      +|++|-|.+..+...-....+..+|.++.|+++.|.+
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            9999999999887443333677788888888888843

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.52  E-value=0.0004  Score=49.33  Aligned_cols=117  Identities=14%  Similarity=0.274  Sum_probs=65.6

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCC
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL  153 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  153 (228)
                      +++.+.+.. .+..     +....|..++.|+.+.+..+ +.......    |..++.++.+.+.+ .+.......|..+
T Consensus        13 ~l~~i~~~~-~~~~-----I~~~~F~~~~~l~~i~~~~~-~~~i~~~~----F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen   13 NLESITFPN-TIKK-----IGENAFSNCTSLKSINFPNN-LTSIGDNA----FSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             T--EEEETS-T--E-----E-TTTTTT-TT-SEEEESST-TSCE-TTT----TTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CCCEEEECC-CeeE-----eChhhccccccccccccccc-ccccceee----eecccccccccccc-ccccccccccccc
Confidence            567777764 3432     44567889989999999885 66655554    88898999999976 4443444567889


Q ss_pred             CCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc
Q 027116          154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN  207 (228)
Q Consensus       154 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~  207 (228)
                      ++|+.+++..+ +. .++...+.+. +++.+.+.. .+.. ++...|.++++|+
T Consensus        81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~-i~~~~F~~~~~l~  129 (129)
T PF13306_consen   81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITK-IEENAFKNCTKLK  129 (129)
T ss_dssp             TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS-----GGG------
T ss_pred             ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccE-ECCccccccccCC
Confidence            99999999776 55 5666578887 999999876 4554 5665788877764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=2.6e-06  Score=68.44  Aligned_cols=134  Identities=22%  Similarity=0.240  Sum_probs=71.6

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC-ccCccccc-cc
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-WFNNSIFS-SL  150 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~-~~  150 (228)
                      .+++.+||+...++...-    -..++.+..|+.|.+.++++.+.+...    +.+-.+|+.|+++.. .++..... -+
T Consensus       185 sRlq~lDLS~s~it~stl----~~iLs~C~kLk~lSlEg~~LdD~I~~~----iAkN~~L~~lnlsm~sG~t~n~~~ll~  256 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTL----HGILSQCSKLKNLSLEGLRLDDPIVNT----IAKNSNLVRLNLSMCSGFTENALQLLL  256 (419)
T ss_pred             hhhHHhhcchhheeHHHH----HHHHHHHHhhhhccccccccCcHHHHH----HhccccceeeccccccccchhHHHHHH
Confidence            457777887776642211    123456667777777777776655443    555666666666653 23211111 23


Q ss_pred             CCCCCCCEEeccCccccCccC----------------------------hhhhcCCCCCCEEEcccCC-CCCCCChhhhc
Q 027116          151 GGLSSLKHLSLFHNRLNGSVD----------------------------IKELDSLSNLEELDMSDNA-INNPVIPKDYR  201 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p----------------------------~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~  201 (228)
                      ..++.|++|+++++.++.+..                            ......+|+|.+|||++|. ++..... .|.
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~  335 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFF  335 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHH
Confidence            455566666666665431110                            0123446677777777663 3332222 455


Q ss_pred             CCCCCcEEECCCCc
Q 027116          202 GLRKLNTLHLGGTE  215 (228)
Q Consensus       202 ~l~~L~~L~L~~N~  215 (228)
                      .++.|++|.++.+.
T Consensus       336 kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCY  349 (419)
T ss_pred             hcchheeeehhhhc
Confidence            66666666666553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=4.1e-05  Score=69.59  Aligned_cols=128  Identities=22%  Similarity=0.228  Sum_probs=90.3

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-cccccc
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSL  150 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~  150 (228)
                      -+.+++|.+++-.+.....    .....++++|..||+|+.+++....      ++.+++|++|.+.+=.+.. ..-..+
T Consensus       147 LPsL~sL~i~~~~~~~~dF----~~lc~sFpNL~sLDIS~TnI~nl~G------IS~LknLq~L~mrnLe~e~~~~l~~L  216 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDF----SQLCASFPNLRSLDISGTNISNLSG------ISRLKNLQVLSMRNLEFESYQDLIDL  216 (699)
T ss_pred             CcccceEEecCceecchhH----HHHhhccCccceeecCCCCccCcHH------HhccccHHHHhccCCCCCchhhHHHH
Confidence            4578889888877632111    2346789999999999999987633      7889999999998877753 222367


Q ss_pred             CCCCCCCEEeccCccccCccCh------hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEE
Q 027116          151 GGLSSLKHLSLFHNRLNGSVDI------KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH  210 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~  210 (228)
                      ..+++|+.||+|..... ..+.      +--..+|+|+.||.+++.+.+.+-+..+...++|+.+.
T Consensus       217 F~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  217 FNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             hcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            78999999999998765 2221      12235899999999999888754443344445554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=3.9e-06  Score=66.83  Aligned_cols=100  Identities=31%  Similarity=0.255  Sum_probs=76.0

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc-cccC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF-SSLG  151 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~  151 (228)
                      ..|..|++=|+++.++.       ...+++.|++|.||-|.|+...+      +..+++|++|+|..|.|..... ..+.
T Consensus        19 ~~vkKLNcwg~~L~DIs-------ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLk   85 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS-------ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLK   85 (388)
T ss_pred             HHhhhhcccCCCccHHH-------HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHh
Confidence            35666777777664433       35778999999999999988776      7889999999999999975432 2568


Q ss_pred             CCCCCCEEeccCccccCccCh----hhhcCCCCCCEEE
Q 027116          152 GLSSLKHLSLFHNRLNGSVDI----KELDSLSNLEELD  185 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~----~~~~~l~~L~~L~  185 (228)
                      ++++|+.|.|..|...|+-+.    ..+..+|+|+.||
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            899999999999988766443    2466788888775

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.43  E-value=0.00047  Score=58.67  Aligned_cols=115  Identities=12%  Similarity=0.046  Sum_probs=65.4

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC-ccCcccccccC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-WFNNSIFSSLG  151 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~  151 (228)
                      ...+.|+++++.+...+.         --.+|+.|.++++.--...|..    +  .++|+.|++++| .+. .+|.   
T Consensus        52 ~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~-sLP~---  112 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---------LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEIS-GLPE---  112 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCccccc-cccc---
Confidence            346788999887744221         1235899999875432333332    2  358899999987 444 3443   


Q ss_pred             CCCCCCEEeccCcccc--CccChhhhcCC------------------CCCCEEEcccCCCCCCCChhhhcCCCCCcEEEC
Q 027116          152 GLSSLKHLSLFHNRLN--GSVDIKELDSL------------------SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL  211 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~--~~~p~~~~~~l------------------~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L  211 (228)
                         +|+.|+++.+...  +.+|. .+..+                  ++|++|++++|.... .|.   .--.+|++|++
T Consensus       113 ---sLe~L~L~~n~~~~L~~LPs-sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~---~LP~SLk~L~l  184 (426)
T PRK15386        113 ---SVRSLEIKGSATDSIKNVPN-GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE---KLPESLQSITL  184 (426)
T ss_pred             ---ccceEEeCCCCCcccccCcc-hHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc---cccccCcEEEe
Confidence               4666666665532  23443 22211                  356677777666443 333   12247777777


Q ss_pred             CCC
Q 027116          212 GGT  214 (228)
Q Consensus       212 ~~N  214 (228)
                      +.|
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            766

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.97  E-value=0.0046  Score=52.75  Aligned_cols=97  Identities=15%  Similarity=0.171  Sum_probs=54.8

Q ss_pred             CCCcEEEEEcCCCC-cccccccccCcccccCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCccC--ccc
Q 027116           71 TIGRVIKLDLAQIR-KWESAEWYMNASLFTPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNWFN--NSI  146 (228)
Q Consensus        71 ~~~~v~~L~l~~n~-l~~~~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~  146 (228)
                      .+..++.|+++++. +..     + +..+  .++|++|++++| .+... |          ..|+.|+++.+...  +.+
T Consensus        70 LP~sLtsL~Lsnc~nLts-----L-P~~L--P~nLe~L~Ls~Cs~L~sL-P----------~sLe~L~L~~n~~~~L~~L  130 (426)
T PRK15386         70 LPNELTEITIENCNNLTT-----L-PGSI--PEGLEKLTVCHCPEISGL-P----------ESVRSLEIKGSATDSIKNV  130 (426)
T ss_pred             CCCCCcEEEccCCCCccc-----C-Cchh--hhhhhheEccCccccccc-c----------cccceEEeCCCCCcccccC
Confidence            35578999988743 221     1 1112  257899999988 55432 2          23445555444321  123


Q ss_pred             ccccCC-----------------C-CCCCEEeccCccccCccChhhhcCCCCCCEEEcccCC
Q 027116          147 FSSLGG-----------------L-SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA  190 (228)
Q Consensus       147 ~~~~~~-----------------l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~  190 (228)
                      |..+..                 + ++|++|++++|... .+|. .+.  .+|+.|+++.+.
T Consensus       131 PssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~-~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        131 PNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPE-KLP--ESLQSITLHIEQ  188 (426)
T ss_pred             cchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcc-ccc--ccCcEEEecccc
Confidence            322211                 1 47889999888875 4453 222  578999988763

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.59  E-value=0.0015  Score=32.78  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=18.3

Q ss_pred             CCCCcEEECCCCcCCcccCCccc
Q 027116          203 LRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       203 l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      +++|++|+|++|+|+.||.+.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888888887764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.59  E-value=0.0015  Score=32.78  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=18.3

Q ss_pred             CCCCcEEECCCCcCCcccCCccc
Q 027116          203 LRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       203 l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      +++|++|+|++|+|+.||.+.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888888887764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.54  E-value=0.0016  Score=29.17  Aligned_cols=17  Identities=24%  Similarity=0.411  Sum_probs=8.5

Q ss_pred             CCCcEEECCCCcCCccc
Q 027116          204 RKLNTLHLGGTEIAMID  220 (228)
Q Consensus       204 ~~L~~L~L~~N~i~~i~  220 (228)
                      ++|+.|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35667777777776654

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=5.5e-05  Score=61.02  Aligned_cols=89  Identities=26%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCc-cccCccChhhhcCCCC
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHN-RLNGSVDIKELDSLSN  180 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~~l~~  180 (228)
                      ..|++|||++..|+...-...   ++.+.+|+.|.+.++++.+.+...+..-.+|+.|+++.+ .++..--...+.+++.
T Consensus       185 sRlq~lDLS~s~it~stl~~i---Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGI---LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHH---HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            358999999998875432221   677899999999999999888888999999999999886 3442111125677888


Q ss_pred             CCEEEcccCCCCC
Q 027116          181 LEELDMSDNAINN  193 (228)
Q Consensus       181 L~~L~L~~N~l~~  193 (228)
                      |..|+++.+.+..
T Consensus       262 L~~LNlsWc~l~~  274 (419)
T KOG2120|consen  262 LDELNLSWCFLFT  274 (419)
T ss_pred             HhhcCchHhhccc
Confidence            8888888887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.44  E-value=0.0014  Score=31.54  Aligned_cols=18  Identities=33%  Similarity=0.529  Sum_probs=14.9

Q ss_pred             CCcEEECCCCcCCcccCC
Q 027116          205 KLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       205 ~L~~L~L~~N~i~~i~~~  222 (228)
                      +|++|++++|+|+.||.+
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            478888888888888876

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.39  E-value=0.0035  Score=50.29  Aligned_cols=143  Identities=16%  Similarity=0.155  Sum_probs=98.2

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcc-------cccccCCCCCCcEEECCCCccCc
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENK-------GLDRLSRLNNLKFLHLDFNWFNN  144 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-------~~~~l~~l~~L~~L~Ls~n~l~~  144 (228)
                      ...++.+|||||.+.....-.+ ...+++-.+|+..+++.-.. +...+.       ....+-+|++|+..+||+|.|..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            4578999999999853222111 23456678888888887543 222211       12336789999999999999987


Q ss_pred             ccccc----cCCCCCCCEEeccCccccCccChh-------------hhcCCCCCCEEEcccCCCCCCCChhhhc---CC-
Q 027116          145 SIFSS----LGGLSSLKHLSLFHNRLNGSVDIK-------------ELDSLSNLEELDMSDNAINNPVIPKDYR---GL-  203 (228)
Q Consensus       145 ~~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~-------------~~~~l~~L~~L~L~~N~l~~~~p~~~~~---~l-  203 (228)
                      ..|+.    +..-..|.+|.+++|.+. .+...             ...+-|.|+++....|++.. .+...+.   .. 
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh  184 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH  184 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence            76654    456678999999999985 33221             23456889999999999887 5652332   12 


Q ss_pred             CCCcEEECCCCcCCc
Q 027116          204 RKLNTLHLGGTEIAM  218 (228)
Q Consensus       204 ~~L~~L~L~~N~i~~  218 (228)
                      ..|+.+.+..|.|..
T Consensus       185 ~~lk~vki~qNgIrp  199 (388)
T COG5238         185 ENLKEVKIQQNGIRP  199 (388)
T ss_pred             cCceeEEeeecCcCc
Confidence            478899998888753

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.31  E-value=0.002  Score=30.93  Aligned_cols=12  Identities=33%  Similarity=0.465  Sum_probs=5.2

Q ss_pred             CcEEECCCCccC
Q 027116          132 LKFLHLDFNWFN  143 (228)
Q Consensus       132 L~~L~Ls~n~l~  143 (228)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.98  E-value=0.0003  Score=54.99  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=63.6

Q ss_pred             ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116           96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL  175 (228)
Q Consensus        96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  175 (228)
                      ..+..+...+.||++.|++-.....     |+.++.+..|+++.|.+. ..|+.++....+..+++..|..+ ..|. .+
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~  107 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQ  107 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cc
Confidence            3456667777788888877655444     666777777788877776 66676777777777777777776 6676 77


Q ss_pred             cCCCCCCEEEcccCCCCC
Q 027116          176 DSLSNLEELDMSDNAINN  193 (228)
Q Consensus       176 ~~l~~L~~L~L~~N~l~~  193 (228)
                      +..+.++++++.+|.+..
T Consensus       108 ~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             cccCCcchhhhccCcchH
Confidence            777777777777777543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.84  E-value=0.00021  Score=62.36  Aligned_cols=94  Identities=22%  Similarity=0.171  Sum_probs=41.1

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc----ccccc
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN----SIFSS  149 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~  149 (228)
                      .+..|++++|.+...|...+.......-+.+++|++..|.++......+...+.....++.++++.|.+..    .++..
T Consensus       116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~  195 (478)
T KOG4308|consen  116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA  195 (478)
T ss_pred             cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence            34445555555543332222111111113344444444544443333333334455666666666666521    11122


Q ss_pred             cC----CCCCCCEEeccCcccc
Q 027116          150 LG----GLSSLKHLSLFHNRLN  167 (228)
Q Consensus       150 ~~----~l~~L~~L~Ls~n~l~  167 (228)
                      +.    ...++++|.+++|.++
T Consensus       196 l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  196 LESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             hhhhhcccccHHHHhhhhcCcC
Confidence            22    3455666666666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.77  E-value=0.00038  Score=54.43  Aligned_cols=85  Identities=19%  Similarity=0.053  Sum_probs=69.6

Q ss_pred             CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116           71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL  150 (228)
Q Consensus        71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  150 (228)
                      ...+++.||++.|++...|.      .|+-++.+..|+++.|++.-.+.+     +.....++.+++.+|..+ ..|.++
T Consensus        40 ~~kr~tvld~~s~r~vn~~~------n~s~~t~~~rl~~sknq~~~~~~d-----~~q~~e~~~~~~~~n~~~-~~p~s~  107 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGK------NFSILTRLVRLDLSKNQIKFLPKD-----AKQQRETVNAASHKNNHS-QQPKSQ  107 (326)
T ss_pred             ccceeeeehhhhhHHHhhcc------chHHHHHHHHHhccHhhHhhChhh-----HHHHHHHHHHHhhccchh-hCCccc
Confidence            35689999999998855443      356678888999999998775554     777888888899999987 778889


Q ss_pred             CCCCCCCEEeccCcccc
Q 027116          151 GGLSSLKHLSLFHNRLN  167 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~  167 (228)
                      +..++++++++..|.+.
T Consensus       108 ~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccCCcchhhhccCcch
Confidence            99999999999999876

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.72  E-value=0.037  Score=27.50  Aligned_cols=17  Identities=35%  Similarity=0.507  Sum_probs=7.6

Q ss_pred             CCCEEeccCccccCccCh
Q 027116          155 SLKHLSLFHNRLNGSVDI  172 (228)
Q Consensus       155 ~L~~L~Ls~n~l~~~~p~  172 (228)
                      +|++|+|++|+++ .+|.
T Consensus         3 ~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCEEECCCCcCC-cCCH
Confidence            3444444444444 3443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.72  E-value=0.037  Score=27.50  Aligned_cols=17  Identities=35%  Similarity=0.507  Sum_probs=7.6

Q ss_pred             CCCEEeccCccccCccCh
Q 027116          155 SLKHLSLFHNRLNGSVDI  172 (228)
Q Consensus       155 ~L~~L~Ls~n~l~~~~p~  172 (228)
                      +|++|+|++|+++ .+|.
T Consensus         3 ~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCEEECCCCcCC-cCCH
Confidence            3444444444444 3443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=93.99  E-value=0.055  Score=27.08  Aligned_cols=18  Identities=28%  Similarity=0.449  Sum_probs=13.2

Q ss_pred             CCCcEEECCCCcCCcccC
Q 027116          204 RKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       204 ~~L~~L~L~~N~i~~i~~  221 (228)
                      .+|+.|+++.|+|+.|+.
T Consensus         2 ~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        2 TNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CccCEEECCCCccceecC
Confidence            567778888888777755

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.54  E-value=0.011  Score=45.34  Aligned_cols=79  Identities=25%  Similarity=0.228  Sum_probs=33.2

Q ss_pred             CCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc-cccccC-CCCCCCEEeccCcc-ccCccChhhhcCCCC
Q 027116          104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS-IFSSLG-GLSSLKHLSLFHNR-LNGSVDIKELDSLSN  180 (228)
Q Consensus       104 L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~  180 (228)
                      ++.+|-++..|....-..    +..++.++.|.+.++.--+. .-+.++ ..++|+.|++++|. |+ +--...+..+++
T Consensus       103 IeaVDAsds~I~~eGle~----L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lkn  177 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEH----LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKN  177 (221)
T ss_pred             EEEEecCCchHHHHHHHH----HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhh
Confidence            445555555554433222    45555555555555432111 001111 23455555555443 32 211113444455


Q ss_pred             CCEEEcc
Q 027116          181 LEELDMS  187 (228)
Q Consensus       181 L~~L~L~  187 (228)
                      |+.|.+.
T Consensus       178 Lr~L~l~  184 (221)
T KOG3864|consen  178 LRRLHLY  184 (221)
T ss_pred             hHHHHhc
Confidence            5555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.65  E-value=0.052  Score=47.16  Aligned_cols=114  Identities=20%  Similarity=0.053  Sum_probs=59.6

Q ss_pred             CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC-ccCccc----ccccCCCCCCCEEeccCcc-ccCccChh
Q 027116          100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-WFNNSI----FSSLGGLSSLKHLSLFHNR-LNGSVDIK  173 (228)
Q Consensus       100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~p~~  173 (228)
                      ..+.|+.+.+..+.-.....  .......+++|+.|+++.+ ......    ......+++|+.|+++++. +++..-. 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-  262 (482)
T ss_pred             hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-
Confidence            35667777666653221100  0011456777777777752 111111    1123445677777777777 4422211 


Q ss_pred             hhc-CCCCCCEEEcccCC-CCCCCChhhhcCCCCCcEEECCCCcC
Q 027116          174 ELD-SLSNLEELDMSDNA-INNPVIPKDYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       174 ~~~-~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~L~~L~L~~N~i  216 (228)
                      .+. .+++|+.|.+.++. +++..-......++.|++|+++++..
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            222 36777777766665 45432222344567777777776553

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.81  E-value=0.11  Score=25.85  Aligned_cols=18  Identities=11%  Similarity=0.320  Sum_probs=14.1

Q ss_pred             CCCcEEECCCCcCCcccC
Q 027116          204 RKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       204 ~~L~~L~L~~N~i~~i~~  221 (228)
                      ++|+.|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            367788888888888875

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.83  E-value=0.05  Score=26.43  Aligned_cols=12  Identities=42%  Similarity=0.409  Sum_probs=4.2

Q ss_pred             CCcEEECCCCcc
Q 027116          131 NLKFLHLDFNWF  142 (228)
Q Consensus       131 ~L~~L~Ls~n~l  142 (228)
                      +|++|+|++|++
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            344444444444

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.70  E-value=0.0036  Score=54.79  Aligned_cols=144  Identities=23%  Similarity=0.191  Sum_probs=82.3

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccc----cCCCCCCcEEECCCCccCcccc-
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDR----LSRLNNLKFLHLDFNWFNNSIF-  147 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~-  147 (228)
                      ..++.+++..+.+...|...+.. .+.....++.++++.|.+...........    +....++++|.++++.++.... 
T Consensus       144 ~~l~~L~l~~c~l~~~g~~~l~~-~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~  222 (478)
T KOG4308|consen  144 CLLQTLELVSCSLTSEGAAPLAA-VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA  222 (478)
T ss_pred             HHHHHHHhhcccccccchHHHHH-HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH
Confidence            34555677777776555543332 33447777788888887642111111111    2346677788888877753211 


Q ss_pred             ---cccCCCCC-CCEEeccCccccCc----cChhhhcCC-CCCCEEEcccCCCCCCCCh---hhhcCCCCCcEEECCCCc
Q 027116          148 ---SSLGGLSS-LKHLSLFHNRLNGS----VDIKELDSL-SNLEELDMSDNAINNPVIP---KDYRGLRKLNTLHLGGTE  215 (228)
Q Consensus       148 ---~~~~~l~~-L~~L~Ls~n~l~~~----~p~~~~~~l-~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~L~~N~  215 (228)
                         ..+...++ +..+++..|.+.+.    +.+ .+..+ ..+++++++.|.|++.-..   ..+...+.++++.+++|+
T Consensus       223 ~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  223 LLDEVLASGESLLRELDLASNKLGDVGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             HHHHHHhccchhhHHHHHHhcCcchHHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence               23344444 66677888877532    111 33334 5667888888887763222   134456677888888887


Q ss_pred             CCc
Q 027116          216 IAM  218 (228)
Q Consensus       216 i~~  218 (228)
                      +..
T Consensus       302 l~~  304 (478)
T KOG4308|consen  302 LTD  304 (478)
T ss_pred             ccc
Confidence            764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.51  E-value=0.22  Score=43.29  Aligned_cols=93  Identities=26%  Similarity=0.130  Sum_probs=42.7

Q ss_pred             cCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCc-cCcccccccCC-CCCCCEEeccCcc-ccCccChhh
Q 027116           99 TPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNW-FNNSIFSSLGG-LSSLKHLSLFHNR-LNGSVDIKE  174 (228)
Q Consensus        99 ~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~Ls~n~-l~~~~p~~~  174 (228)
                      ...++|+.|+++++ ......+.........+++|+.|+++... ++...-..+.. +++|++|.+.++. +++.--...
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i  290 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI  290 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence            44566666666652 11111110000013345666666666655 44333233222 5566666655555 332211113


Q ss_pred             hcCCCCCCEEEcccCCC
Q 027116          175 LDSLSNLEELDMSDNAI  191 (228)
Q Consensus       175 ~~~l~~L~~L~L~~N~l  191 (228)
                      ...++.|+.|+++.+..
T Consensus       291 ~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHhcCcccEEeeecCcc
Confidence            34456666666665543

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=87.07  E-value=0.32  Score=42.84  Aligned_cols=65  Identities=23%  Similarity=0.137  Sum_probs=28.7

Q ss_pred             CCCCCcEEECCCCccCcccc--cccCCCCCCCEEeccCc--cccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116          128 RLNNLKFLHLDFNWFNNSIF--SSLGGLSSLKHLSLFHN--RLNGSVDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       128 ~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      +.+.+..+.|++|++.....  .--...|+|..|+|++|  .+.. .++..--....|+.|.+.+|++..
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCcccc
Confidence            34455555566665542210  01123355666666666  3321 111011122335666666666654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.04  E-value=0.64  Score=23.51  Aligned_cols=15  Identities=20%  Similarity=0.326  Sum_probs=10.5

Q ss_pred             CCCcEEECCCCcCCc
Q 027116          204 RKLNTLHLGGTEIAM  218 (228)
Q Consensus       204 ~~L~~L~L~~N~i~~  218 (228)
                      ++|++|+|++|.|..
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            467777777777754

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.28  E-value=0.67  Score=40.94  Aligned_cols=89  Identities=22%  Similarity=0.157  Sum_probs=53.5

Q ss_pred             cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC--ccCcccccccC--CCCCCCEEeccCccccCccCh--
Q 027116           99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN--WFNNSIFSSLG--GLSSLKHLSLFHNRLNGSVDI--  172 (228)
Q Consensus        99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~--  172 (228)
                      .+.+.+..+.|++|++.....-..  .-...|+|..|+|++|  .+...  .++.  +...|++|-+.+|.+...+..  
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~ss--lsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s  290 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSS--LSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRS  290 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhH--HHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhH
Confidence            556788888999998876433111  0245788999999998  44321  2222  234588999999988643221  


Q ss_pred             h----hhcCCCCCCEEEcccCCCCC
Q 027116          173 K----ELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       173 ~----~~~~l~~L~~L~L~~N~l~~  193 (228)
                      .    ....+|+|..||  +..+..
T Consensus       291 ~yv~~i~~~FPKL~~LD--G~ev~~  313 (585)
T KOG3763|consen  291 EYVSAIRELFPKLLRLD--GVEVQP  313 (585)
T ss_pred             HHHHHHHHhcchheeec--CcccCc
Confidence            1    222567776554  444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.16  E-value=0.23  Score=38.26  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=15.3

Q ss_pred             CCCCcEEECCCC-ccCcccccccCCCCCCCEEecc
Q 027116          129 LNNLKFLHLDFN-WFNNSIFSSLGGLSSLKHLSLF  162 (228)
Q Consensus       129 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls  162 (228)
                      .++|+.|++++| +|+...-..+..+++|+.|.+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            345555555533 3443333344444555544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  122 bits (308), Expect = 4e-32
 Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 16/195 (8%)

Query: 26  GCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRK 85
             L +E   L+  K        L +W  +    + C ++ V C +   +V  +DL+    
Sbjct: 8   QSLYREIHQLISFKDVLPDKNLLPDWSSN---KNPCTFDGVTCRD--DKVTSIDLSSKP- 61

Query: 86  WESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS 145
                  +++SL      LESL L+ + I G      +       +L  L L  N  +  
Sbjct: 62  LNVGFSAVSSSLL-SLTGLESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSGP 115

Query: 146 I--FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP--KDYR 201
           +   +SLG  S LK L++  N L+    +     L++LE LD+S N+I+   +       
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175

Query: 202 GLRKLNTLHLGGTEI 216
           G  +L  L + G +I
Sbjct: 176 GCGELKHLAISGNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
              LE LD++ N+ +      G+  L   + L+ L +  N  +     ++   + LK L+
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRG-LRKLNTLHLGG 213
           +  N+  G +       L +L+ L +++N      IP    G    L  L L G
Sbjct: 254 ISSNQFVGPIP---PLPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSG 303

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.2 bits (170), Expect = 7e-14
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHL 159
           P + L+ L L  N   G + +         + L  L L  N F  ++    G  S L+ L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPD---FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 160 SLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           +L  N  +G + +  L  +  L+ LD+S N  +  +          L TL L  
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
            SL      L +LDL+ N+ +G +    L +    N L+ L+L  N F   I  +L   S
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILP-NLCQNP-KNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
            L  L L  N L+G++    L SLS L +L +  N +    IP++   ++ L TL L  
Sbjct: 419 ELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDF 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             +L  L L  N + G +       L  +  L+ L LDFN     I S L   ++L  +S
Sbjct: 441 LSKLRDLKLWLNMLEGEI----PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           L +NRL G +  K +  L NL  L +S+N+ +   IP +    R L  L L  
Sbjct: 497 LSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 8e-13
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
           +L SL L++N ++G + +     L  L+ L+ L L  N     I   L  + +L+ L L 
Sbjct: 419 ELVSLHLSFNYLSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
            N L G +    L + +NL  + +S+N +    IPK    L  L  L L  
Sbjct: 475 FNDLTGEIP-SGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSN 523

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG-LSSLKHLSL 161
           +L+ L+++ N   G +          L +L++L L  N F   I   L G   +L  L L
Sbjct: 248 ELKLLNISSNQFVGPIPP------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
             N   G+V      S S LE L +S N  +  +       +R L  L L   E 
Sbjct: 302 SGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 9e-11
 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI-FSSLGGL 153
             L      L  LDL+ N   G V           + L+ L L  N F+  +   +L  +
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPP----FFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLS-NLEELDMSDNAINNPVIPKD--YRGLRKLNTLH 210
             LK L L  N  +G +  + L +LS +L  LD+S N  + P I  +        L  L+
Sbjct: 343 RGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGP-ILPNLCQNPKNTLQELY 400

Query: 211 LGG 213
           L  
Sbjct: 401 LQN 403

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
                  ++T     G              ++ FL + +N  +  I   +G +  L  L+
Sbjct: 607 LSTRNPCNITSRVYGGHT----SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 161 LFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209
           L HN ++GS  I  E+  L  L  LD+S N ++   IP+    L  L  +
Sbjct: 663 LGHNDISGS--IPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTMLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
             L  + L+ N + G +       + RL NL  L L  N F+ +I + LG   SL  L L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             N  NG++      ++       ++ N I         +        H  G
Sbjct: 546 NTNLFNGTIP----AAMFKQ-SGKIAANFIAGK-RYVYIKNDGMKKECHGAG 591

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 20/129 (15%)

Query: 101 FQQLESLDLTWNSIAG----------------CVENKGLDRLSRLNNLKFLHLDFNWFNN 144
            + L  LDL  N   G                 +  K    +      K  H   N    
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 145 S--IFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRG 202
                  L  LS+    ++      G       D+  ++  LDMS N ++   IPK+   
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHT-SPTFDNNGSMMFLDMSYNMLSGY-IPKEIGS 654

Query: 203 LRKLNTLHL 211
           +  L  L+L
Sbjct: 655 MPYLFILNL 663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 124 DRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLE 182
           ++L+RL+     ++    +      +     S+  L + +N L+G   I KE+ S+  L 
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY--IPKEIGSMPYLF 659

Query: 183 ELDMSDNAINNPVIPKDYRGLRKLNTL 209
            L++  N I+   IP +   LR LN L
Sbjct: 660 ILNLGHNDISGS-IPDEVGDLRGLNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
              +  LD+++N ++G +       +  +  L  L+L  N  + SI   +G L  L  L 
Sbjct: 631 NGSMMFLDMSYNMLSGYI----PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDN 189
           L  N+L+G +  + + +L+ L E+D+S+N
Sbjct: 687 LSSNKLDGRIP-QAMSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
             L  L+L  N I+G +     D +  L  L  L L  N  +  I  ++  L+ L  + L
Sbjct: 656 PYLFILNLGHNDISGSI----PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

Query: 162 FHNRLNGSV 170
            +N L+G +
Sbjct: 712 SNNNLSGPI 720

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.9 bits (224), Expect = 1e-21
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 15/188 (7%)

Query: 25  EGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNET--IGRVIKLDLAQ 82
           E C  Q++ ALLQIK        L +W+   +  +   W  V C+      RV  LDL+ 
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNR-TWLGVLCDTDTQTYRVNNLDLSG 59

Query: 83  IRKWESAEWYMNASLFTPFQQLESLDLT-WNSIAGCVENKGLDRLSRLNNLKFLHLDFNW 141
           +       + + +SL      L  L +   N++ G +       +++L  L +L++    
Sbjct: 60  LN--LPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTN 112

Query: 142 FNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPKDY 200
            + +I   L  + +L  L   +N L+G+  +   + SL NL  +    N I+   IP  Y
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGNRISGA-IPDSY 169

Query: 201 RGLRKLNT 208
               KL T
Sbjct: 170 GSFSKLFT 177

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 7e-11
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFH 163
             S+ ++ N + G +        + LN L F+ L  N          G   + + + L  
Sbjct: 176 FTSMTISRNRLTGKI----PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 164 NRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           N L     + ++    NL  LD+ +N I    +P+    L+ L++L++
Sbjct: 231 NSLAFD--LGKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 9e-09
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
           +  + + L  NS+A       L ++    NL  L L  N    ++   L  L  L  L++
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDN 189
             N L G   I +  +L   +    ++N
Sbjct: 276 SFNNLCGE--IPQGGNLQRFDVSAYANN 301

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 1/129 (0%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
            +++FT    L+ L L+ +  +              + L  L+L  N  +     +   L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             L+ L L  N +   +  +E   L N+ E+ +S N     +    +  +  L  L L  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRR 463

Query: 214 TEIAMIDGS 222
             +  +D S
Sbjct: 464 VALKNVDSS 472

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           A+ FT + QL SLD+ +N+I+  +E    +   +L  LK L+L  N  +     +    +
Sbjct: 42  AANFTRYSQLTSLDVGFNTISK-LEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           +L  L L  N +   +         NL  LD+S N +++         L  L  L L   
Sbjct: 98  NLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNN 155

Query: 215 EIAMI 219
           +I  +
Sbjct: 156 KIQAL 160

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 8e-15
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 93  MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152
           ++   F     L  L L  NSI   ++N   +   +  NL  L L  N  +++   +   
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQK-IKN---NPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 153 LSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           L +L+ L L +N++     +  ++ + S+L++L++S N I     P  +  + +L  L L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFL 202

Query: 212 GGTEI 216
              ++
Sbjct: 203 NNVQL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
           + F     L+ L L   ++     +        L NL  L L  N   N     L GL  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 156 LKHLSLFHNRL-------NGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNT 208
           L+ L L HN L       N    I  L  LS+L  L++  N  +  +  + ++ L +L  
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKI 564

Query: 209 LHLGGTEIAMIDGS 222
           + LG   +  +  S
Sbjct: 565 IDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKH 158
              +  L+LT N +      + L     +R + L  L + FN  +         L  LK 
Sbjct: 24  PTNITVLNLTHNQL------RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 77

Query: 159 LSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218
           L+L HN L+  +  K     +NL EL +  N+I   +    +   + L TL L    ++ 
Sbjct: 78  LNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSS 135

Query: 219 I 219
            
Sbjct: 136 T 136

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVEN--KGLDRLSRLN---NLKFLHLDFNWFNNSIFS 148
               F    QLE   L +N+I     +   GL  +  LN   +     +           
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 149 SLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD---YRGLRK 205
           S   L  L+HL++  N + G +       L NL+ L +S++  +   +  +         
Sbjct: 324 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 206 LNTLHLGGTEIAMI 219
           L+ L+L   +I+ I
Sbjct: 383 LHILNLTKNKISKI 396

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 14/137 (10%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN--------WFNNS 145
           + S F P + L  LDL+ N+IA   ++     L  L  L+ L L  N             
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDD----MLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 146 IFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRK 205
               L GLS L  L+L  N  +  + ++    L  L+ +D+  N +N  +    +     
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVS 585

Query: 206 LNTLHLGGTEIAMIDGS 222
           L +L+L    I  ++  
Sbjct: 586 LKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 95  ASLFTPFQQLESLDLTWNSI----AGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL 150
             +    ++LE LDL  N++            +  L  L++L  L+L+ N F+       
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH 210
             L  LK + L  N LN  +     ++  +L+ L++  N I +          R L  L 
Sbjct: 557 KDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

Query: 211 LGG 213
           +  
Sbjct: 616 MRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSR--LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             E  D +            L ++      N+  L+L  N       ++    S L  L 
Sbjct: 5   SHEVADCSHL---------KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           +  N ++  ++ +    L  L+ L++  N ++  +  K +     L  LHL    I  I 
Sbjct: 56  VGFNTISK-LEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIK 113

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 93  MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN--NSIFSSL 150
           +    +   + +  + L++N       N      + + +L+ L L        +S  S  
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNS----FALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI-------NNPVIPKDYRGL 203
             L +L  L L +N +   ++   L+ L  LE LD+  N +       N        +GL
Sbjct: 477 QPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 204 RKLNTLHLGGTEIAMIDGS 222
             L+ L+L       I   
Sbjct: 536 SHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHL 159
            +  L  LDL++N++         D  + L  L++  L++N   +    SL GL ++++L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 160 SLFHNRLNGSVDIKELDS--------LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           +L  +    S+ +  L          L  LE L+M DN I   +    + GL  L  L L
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSL 360

Query: 212 GG 213
             
Sbjct: 361 SN 362

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRL-----SRLNNLKFLHLDFNWFNNSIFSSLGG 152
                 +  L+L  +     +    L ++       L  L+ L+++ N       +   G
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 153 LSSLKHLSLFHNRLNGSVDIKEL---DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209
           L +LK+LSL ++  +      E     + S L  L+++ N I+  +    +  L  L  L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVL 410

Query: 210 HLGGTEI 216
            LG  EI
Sbjct: 411 DLGLNEI 417

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 26/104 (25%), Positives = 33/104 (31%), Gaps = 4/104 (3%)

Query: 86  WESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS 145
           W+ A              L  L+L  N           +    L  LK + L  N  N  
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV----EVFKDLFELKIIDLGLNNLNTL 575

Query: 146 IFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
             S      SLK L+L  N +          +  NL ELDM  N
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
                 + L+ L L+ N I           +   ++LK L L  N            +  
Sbjct: 139 GTQVQLENLQELLLSNNKIQA--LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 156 LKHLSLFHNRLNGSV--DIKELDSLSNLEELDMSDNAINNPVIPKDYRGLR--KLNTLHL 211
           L  L L + +L  S+   +    + +++  L +S++ ++       + GL+   L  L L
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDL 255

Query: 212 GGTEIAMID 220
               + ++ 
Sbjct: 256 SYNNLNVVG 264

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG-GL 153
             +F    +L+ +DL  N++            +   +LK L+L  N   +      G   
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPA----SVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 154 SSLKHLSLFHNRLNGS 169
            +L  L +  N  + +
Sbjct: 609 RNLTELDMRFNPFDCT 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
           F  F +L+ LDL+   I   +E+     LS   +L  L L  N   +    +  GLSSL+
Sbjct: 48  FFSFPELQVLDLSRCEIQT-IEDGAYQSLS---HLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
            L      L    +   +  L  L+EL+++ N I +  +P+ +  L  L  L L   +I
Sbjct: 104 KLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
           F   +QLE LD   +++    E         L NL +L +       +      GLSSL+
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            L +  N    +        L NL  LD+S   +   + P  +  L  L  L++      
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFF 507

Query: 218 MIDGS 222
            +D  
Sbjct: 508 SLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
             +     L +L LT N I       G    S L++L+ L        +     +G L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQS--LALGA--FSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL----NTLHL 211
           LK L++ HN +      +   +L+NLE LD+S N I + +   D R L ++     +L L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL 184

Query: 212 GGTEIAMID 220
               +  I 
Sbjct: 185 SLNPMNFIQ 193

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 7e-14
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFH 163
            ++LDL++N +                 L+ L L           +   LS L  L L  
Sbjct: 30  TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 164 NRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           N +   + +     LS+L++L   +  + + +       L+ L  L++  
Sbjct: 86  NPIQS-LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAH 133

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 4/120 (3%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
           NA        LE LDL+ N ++   +           +LK+L L FN    ++ S+  GL
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             L+HL   H+ L    +     SL NL  LD+S            + GL  L  L + G
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAG 454

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 92  YMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151
                +F     LE L +  NS          D  + L NL FL L          ++  
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGL-RKLNTLH 210
            LSSL+ L++ HN     +D      L++L+ LD S N I      ++ +     L  L+
Sbjct: 492 SLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLN 549

Query: 211 LGG 213
           L  
Sbjct: 550 LTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 130 NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
            + K L L FN   +    S      L+ L L    +    D     SLS+L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGN 86

Query: 190 AINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222
            I + +    + GL  L  L    T +A ++  
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 28/152 (18%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLH------------------- 136
            LF     + S  L   +I      + +   S     + L                    
Sbjct: 276 DLFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 137 LDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS-LSNLEELDMSDNAINNPV 195
           L F         S   L SL+ L L  N L+      + D   ++L+ LD+S N +    
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-- 387

Query: 196 IPKDYRGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           +  ++ GL +L  L    + +  +    V ++
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 93  MNASLFTPFQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFN---NSIF 147
           +  +       LE   L           +  D+  L  L NL        + +   + I 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 148 SSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207
                L+++   SL    +     +K+       + L++ +            + L++L 
Sbjct: 276 DLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLT 331

Query: 208 TLHLGGTEI 216
                G   
Sbjct: 332 FTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 28/129 (21%), Positives = 41/129 (31%), Gaps = 10/129 (7%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN--NSIFSSLG 151
                   + L+ L  T N                L +L+FL L  N  +       S  
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKG------GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           G +SLK+L L  N +           L  LE LD   + +        +  LR L  L +
Sbjct: 371 GTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 212 GGTEIAMID 220
             T   +  
Sbjct: 429 SHTHTRVAF 437

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
              +FT  + L  LDL+   +            + L++L+ L++  N F +        L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
           +SL+ L    N +  S   +     S+L  L+++ N
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 12/125 (9%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSLGG 152
               F+    L+ L     ++A          +  L  LK L++  N   +  +      
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLE----ELDMSDNAINNPVIPKDYRGLRKLNT 208
           L++L+HL L  N++       +L  L  +      LD+S N +N   I        +L+ 
Sbjct: 148 LTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLHK 204

Query: 209 LHLGG 213
           L L  
Sbjct: 205 LTLRN 209

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 8/125 (6%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
           +L  L L  N  +  V    +  L+ L   + +  +F    N        L  L +L++ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 163 HNRLN-----GSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
             RL          I   + L+N+    +    I       D+        L L   +  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFG 317

Query: 218 MIDGS 222
                
Sbjct: 318 QFPTL 322

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 5/136 (3%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKF-LHLDFNWFNNSIFSSLGGLS 154
             F+    LE LDL+ N I   +    L  L ++  L   L L  N  N     +   + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAIN--NPVIPKDYRGLRKLNTLHLG 212
            L  L+L +N  + +V    +  L+ LE   +          +   D   L  L  L + 
Sbjct: 202 -LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 213 GTEIAMIDGSKVLINS 228
              +A +D     I  
Sbjct: 261 EFRLAYLDYYLDDIID 276

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 92  YMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151
            ++ + F     L+ L+++ N+               LN+L+ L    N    S    L 
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 152 GL-SSLKHLSLFHNRLNGSVDIKEL-DSLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207
              SSL  L+L  N    + + +     + +  +L +    +     P D +G+  L+
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM-ECATPSDKQGMPVLS 596

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 5e-16
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
           +++ F  F  L+ LDLT   +     ++    L  L+ LK L L  N F N    S    
Sbjct: 270 SSNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN-PVIPKDYRGLRKLNTLHLG 212
            SL HLS+  N     +    L++L NL ELD+S + I          R L  L +L+L 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 213 GTEIAMI 219
             E   +
Sbjct: 385 YNEPLSL 391

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
                   + L  LDL+ + I           L  L++L+ L+L +N   +    +    
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             L+ L L   RL          +L  L+ L++S + ++     + + GL  L  L+L G
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQG 458

Query: 214 TEIAMIDGS 222
                 +  
Sbjct: 459 NHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
             + F+    L  LDLT   I   +             L  L L  N       ++L G 
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQH---RLDTLVLTANPLIFMAETALSGP 104

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
            +LKHL      ++ S+D   L +   LE L +  N I++ +         KL  L    
Sbjct: 105 KALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQN 162

Query: 214 TEIAMI 219
             I  +
Sbjct: 163 NAIHYL 168

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
            +ES++L  +       N         + L+ L L     +  + S L GLS+LK L L 
Sbjct: 255 SVESINLQKHYFFNISSN----TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309

Query: 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
            N+    +      +  +L  L +  N     +       L  L  L L   +I   D
Sbjct: 310 ANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 92  YMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151
             +  LF     L+ L+L  N        +  + L  L  L+ L L F   ++    +  
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPK-GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
            L  + H+ L HNRL  S  I+ L  L  +  L+++ N I+  ++P     L +  T++L
Sbjct: 498 SLKMMNHVDLSHNRLT-SSSIEALSHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINL 554

Query: 212 GG 213
             
Sbjct: 555 RQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 104 LESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
            E L+ ++N +        +     SRL NL FL L           +      L  L L
Sbjct: 35  TECLEFSFNVL------PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
             N L   +    L     L+ L      I++ +        + L +L+LG   I+ I 
Sbjct: 89  TANPLI-FMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIK 145

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 101 FQQLESLDLTWNSIAG-CVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHL 159
               +SL+           +      +  L    F  +D    + ++F  L  +S ++ +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESI 259

Query: 160 SLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219
           +L  +    ++        S L+ELD++   ++   +P    GL  L  L L   +   +
Sbjct: 260 NLQKHYFF-NISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENL 316

Query: 220 DGS 222
              
Sbjct: 317 CQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 93  MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152
           M  +  +  + L+ L      I+  ++   L        L+ L+L  N  ++        
Sbjct: 96  MAETALSGPKALKHLFFIQTGISS-IDFIPLHNQK---TLESLYLGSNHISSIKLPKGFP 151

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLE--ELDMSDNAINNPVIPKDYRGLRKLNTLH 210
              LK L   +N ++  +  +++ SL       L+++ N I    I           +L+
Sbjct: 152 TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAG--IEPGAFDSAVFQSLN 208

Query: 211 LGGTEI 216
            GGT+ 
Sbjct: 209 FGGTQN 214

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD 188
            N+ + L   FN       ++   L +L  L L   ++   +      S   L+ L ++ 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 189 NAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222
           N +   +      G + L  L    T I+ ID  
Sbjct: 91  NPLIF-MAETALSGPKALKHLFFIQTGISSIDFI 123

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 88  SAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF 147
                   +      +LE L L++  ++   +       + L  +  + L  N   +S  
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 148 SSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAIN 192
            +L  L  + +L+L  N ++  +    L  LS    +++  N ++
Sbjct: 518 EALSHLKGI-YLNLASNHIS-IILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
                  + LESL L  N I+    +  L +      LK L    N  +      +  L 
Sbjct: 122 FIPLHNQKTLESLYLGSNHIS----SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPK-DYRGLRKLNTLHLGG 213
              +LSL  N  + +         +  + L+         +        ++ L       
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 214 TEIAMIDGS 222
            +   I  +
Sbjct: 238 MDDEDISPA 246

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
           +   FT  + +  +DL+ N +      + L  L  +    +L+L  N  +  + S L  L
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI----YLNLASNHISIILPSLLPIL 546

Query: 154 SSLKHLSLFHNRLNGSVDIKEL 175
           S  + ++L  N L+ +      
Sbjct: 547 SQQRTINLRQNPLDCTCSNIYF 568

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
            LE L +    +     +  +  LS L +L  L +  +  ++SI + +  L  +  + L 
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
           +N      DI  L +L  L+ L++  + +++    +      KLN L+     I 
Sbjct: 145 YN--GAITDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
              ++ L +              + +S L+NL+ L +      +    +L GL+SL  L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           + H+  + S  + ++++L  +  +D+S N           + L +L +L++    +    
Sbjct: 119 ISHSAHDDS-ILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGVHDYR 175

Query: 221 GSKVLIN 227
           G +    
Sbjct: 176 GIEDFPK 182

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
            L  + L   ++        L  +   +N+K L ++     N  ++ + GLS+L+ L + 
Sbjct: 45  SLTYITLANINV------TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
              +  S  I  L  L++L  LD+S +A ++ ++ K    L K+N++ L  
Sbjct: 97  GKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSY 145

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
            +    L  LD++ ++     ++  L +++ L  +  + L +N     I   L  L  LK
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN 193
            L++  + ++   D + ++    L +L      I  
Sbjct: 163 SLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 12/68 (17%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 149 SLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNT 208
           +   ++SL +++L +  +    D+  ++   N+++L +++    N        GL  L  
Sbjct: 39  TEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHATN---YNPISGLSNLER 92

Query: 209 LHLGGTEI 216
           L + G ++
Sbjct: 93  LRIMGKDV 100

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
            AS F   +QL+ L+L        ++    +    L NL+ L L  +        +  GL
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96

Query: 154 SSLKHLSLFHNRL-NGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLG 212
             L  L L+   L +  +      +L  L  LD+S N I +  +   +  L  L ++   
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 213 GTEIAMID 220
             +I ++ 
Sbjct: 157 SNQIFLVC 164

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSI-FSSLGG 152
            +       E L L++N I      + +       L  L+ L L   +   +I   +   
Sbjct: 18  QVPQVLNTTERLLLSFNYI------RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN 71

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY-RGLRKLNTLHL 211
           L +L+ L L  +++   +       L +L EL +    +++ V+   Y R L+ L  L L
Sbjct: 72  LPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

Query: 212 GGTEIAMIDGSKVLIN 227
              +I  +        
Sbjct: 131 SKNQIRSLYLHPSFGK 146

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
           N+ +F   + L+ L+L +N I   + +   +    L+NL+ L+L +N       S+  GL
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINK-IAD---EAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             + ++ L  N +   +  +    L  L+ LD+ DNA+           +  +  + L G
Sbjct: 338 PKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSG 390

Query: 214 TEIAMID 220
            ++  + 
Sbjct: 391 NKLVTLP 397

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 112 NSIAGCVENKGLDRL-SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSV 170
             IA       L ++   LN  + L L FN+      SS   L  L+ L L       ++
Sbjct: 6   GRIAFY-RFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 171 DIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
           D +   +L NL  LD+  + I   + P  ++GL  L  L L    +
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGL 109

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 12/130 (9%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL----- 150
                   L+ L L  N  + C  +      S   +L+ L L  N    +  + L     
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGD---QTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH 210
            GLS L+ L L HN LN S+       L+ L  L ++ N +    +  +      L  L 
Sbjct: 477 EGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTV--LSHNDL-PANLEILD 532

Query: 211 LGGTEIAMID 220
           +   ++   +
Sbjct: 533 ISRNQLLAPN 542

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
            +      +++I    +      L+R + ++ L L   +  +        L  LK L+L 
Sbjct: 241 HIMGAGFGFHNIKD-PDQNTFAGLARSS-VRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           +N++N  +  +    L NL+ L++S N +   +   ++ GL K+  + L    IA+I 
Sbjct: 299 YNKIN-KIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQ 354

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 19/148 (12%)

Query: 92  YMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN----------- 140
            + +S F    ++  +DL  N I              L  L+ L L  N           
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHI----AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383

Query: 141 ----WFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVI 196
                  N + +      +   + L  NRL     +  L  + +L+ L ++ N  ++   
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 197 PKDYRGLRKLNTLHLGGTEIAMIDGSKV 224
            +       L  L LG   + +   +++
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETEL 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 12/124 (9%)

Query: 93  MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152
           +    F     L+ L+L++N +              L  + ++ L  N        +   
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLL----GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLG 212
           L  L+ L L  N L        +  + ++ ++ +S N +    +PK       ++     
Sbjct: 361 LEKLQTLDLRDNALT------TIHFIPSIPDIFLSGNKLVT--LPKINLTANLIHLSENR 412

Query: 213 GTEI 216
              +
Sbjct: 413 LENL 416

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 91  WYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSS 149
           ++++   F     L  L L +  ++  V   G      L  L  L L  N   +  +  S
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY--FRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLS--NLEELDMSDNAINNPVIPKDYRGLRKLN 207
            G L+SLK +    N++   V   EL+ L    L    ++ N++ + V     + +    
Sbjct: 144 FGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 208 TLHL 211
            + L
Sbjct: 203 NMVL 206

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 10/126 (7%)

Query: 93  MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152
           +    F   + L  LDL+ N I     +       +LN+LK +    N         L  
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPS---FGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 153 LS--SLKHLSLFHNRLNGSVDIKELDSLS-----NLEELDMSDNAINNPVIPKDYRGLRK 205
           L   +L   SL  N L   V +     ++      LE LD+S N     +       + K
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 206 LNTLHL 211
                L
Sbjct: 231 SQAFSL 236

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 143 NNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRG 202
             ++      L++ + L L  N +  +V       L  L+ L++        +  + +R 
Sbjct: 13  FCNLTQVPQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN 71

Query: 203 LRKLNTLHLGGTEIAMID 220
           L  L  L LG ++I  + 
Sbjct: 72  LPNLRILDLGSSKIYFLH 89

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 92  YMNASLFTPFQQ--LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLD----------- 138
            +      P Q   L    L  NS+   V       ++   N+    LD           
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 139 ---FNWFNNSIFSSLGGLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNP 194
               N  + S   SL     +       + +     +     + S++  LD+S   + + 
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS- 280

Query: 195 VIPKDYRGLRKLNTLHLGGTEIAMIDGS 222
           +  + +  L+ L  L+L   +I  I   
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADE 308

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 10/137 (7%)

Query: 77  KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLH 136
           +L L +     + E  +   +F     L+ L L  N +     +      S L  L+ L 
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL----NSLPPGVFSHLTALRGLS 510

Query: 137 LDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVI 196
           L+ N       S     ++L+ L +  N+L         D   +L  LD++ N       
Sbjct: 511 LNSNRLTV--LSHNDLPANLEILDISRNQLL----APNPDVFVSLSVLDITHNKFICECE 564

Query: 197 PKDYRGLRKLNTLHLGG 213
              +        + + G
Sbjct: 565 LSTFINWLNHTNVTIAG 581

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
           + F   ++L+ LD   +++    E         L  L +L + +            GL+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTE---FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215
           L  L +  N    +       + +NL  LD+S   +   +    +  L +L  L++    
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNN 508

Query: 216 IAMIDGS 222
           +  +D S
Sbjct: 509 LLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           +  F+ F +L+ LDL+   I   +E+K    L    +L  L L  N   +    S  GL+
Sbjct: 49  SYSFSNFSELQWLDLSRCEIET-IEDKAWHGLH---HLSNLILTGNPIQSFSPGSFSGLT 104

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           SL++L     +L  S++   +  L  L++L+++ N I++  +P  +  L  L  + L   
Sbjct: 105 SLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 215 EIAMID 220
            I  I 
Sbjct: 164 YIQTIT 169

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 13/131 (9%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
           +     L +L LT N I      +       S L +L+ L        +     +G L +
Sbjct: 76  WHGLHHLSNLILTGNPI------QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN----TLHL 211
           LK L++ HN ++         +L+NL  +D+S N I   +   D + LR+      +L +
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDM 188

Query: 212 GGTEIAMIDGS 222
               I  I   
Sbjct: 189 SLNPIDFIQDQ 199

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS-LGG 152
             S F   ++L  LD+++ +     +         L +L  L +  N F ++  S+    
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLG 212
            ++L  L L   +L   +     D+L  L+ L+MS N +   +    Y  L  L+TL   
Sbjct: 472 TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCS 529

Query: 213 GTEIAMIDGS 222
              I    G 
Sbjct: 530 FNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 5/120 (4%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
              +F     L +L +  NS      +   +  +   NL FL L         +     L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             L+ L++ HN L   +D    + L +L  LD S N I            + L   +L  
Sbjct: 497 HRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 10/129 (7%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKH 158
               +++DL++N +      K L     S  + L++L L           +  GL  L +
Sbjct: 31  PSSTKNIDLSFNPL------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84

Query: 159 LSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218
           L L  N +  S        L++LE L   +  + + +       L  L  L++    I  
Sbjct: 85  LILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHS 142

Query: 219 IDGSKVLIN 227
                   N
Sbjct: 143 CKLPAYFSN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 20/150 (13%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN---------------NLKFLHLD 138
           +   F     + ++ L   SI    +     +   L+                LK L L 
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLT 336

Query: 139 FNWFNNSIFSSLGGLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIP 197
            N    SI      L SL +L L  N L+            ++L  LD+S N     ++ 
Sbjct: 337 MN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMS 392

Query: 198 KDYRGLRKLNTLHLGGTEIAMIDGSKVLIN 227
            ++ GL +L  L    + +  +      ++
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL--GGLSS 155
                 L+SL LT N            +   L +L +L L  N  + S   S    G +S
Sbjct: 324 TLDLPFLKSLTLTMNKG------SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215
           L+HL L  N     +       L  L+ LD   + +        +  L KL  L +  T 
Sbjct: 378 LRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 216 IAMI 219
             + 
Sbjct: 436 TKID 439

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
            +++F     L  LDL+   +              L+ L+ L++  N       S    L
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISW----GVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
            SL  L    NR+  +          +L   ++++N
Sbjct: 521 YSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 9/137 (6%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
                   L+ L++  N I  C         S L NL  + L +N+      + L  L  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLP---AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 156 LK----HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
                  L +  N ++      +      L EL +  N  ++ ++    + L  L+   L
Sbjct: 179 NPQVNLSLDMSLNPIDFI--QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 212 GGTEIAMIDGSKVLINS 228
              E       ++   S
Sbjct: 237 ILGEFKDERNLEIFEPS 253

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
           +L  L L  N  +  +    L  L+ L+  + +  +F    N        +  L  +++ 
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 163 HNRLNG----SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
             RL      S DI +   L+N+  + ++  +I        +   + L+ +     + 
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 16/147 (10%), Positives = 38/147 (25%), Gaps = 25/147 (17%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNS--IFSSLG 151
           +       L    L           +  +   +  L ++        + N+         
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSL------------------SNLEELDMSDNAINN 193
            L+++  +SL    +    D+ +                        L+ L ++ N  + 
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS- 341

Query: 194 PVIPKDYRGLRKLNTLHLGGTEIAMID 220
             I      L  L+ L L    ++   
Sbjct: 342 --ISFKKVALPSLSYLDLSRNALSFSG 366

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 8/122 (6%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRL-NNLKFLHLDFNWFNNSIFSSLGGLS 154
           + F+    L  +DL++N I   +    L  L         L +  N  +     +  G+ 
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNP-----VIPKDYRGLRKLNTL 209
            L  L+L  N  + ++    L +L+ L    +      +        P    GL  +   
Sbjct: 206 -LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 210 HL 211
             
Sbjct: 265 EF 266

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 92  YMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151
            ++  +F    +L+ L+++ N++     +      ++L +L  L   FN    S      
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSH----YNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 152 GLSSLKHLSLFHNRLN 167
              SL   +L +N + 
Sbjct: 543 FPKSLAFFNLTNNSVA 558

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
           F   +QLE LD   +++    E         L NL +L +       +      GLSSL+
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGGTEI 216
            L +  N    +        L NL  LD+S   +    +    +  L  L  L++     
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNF 211

Query: 217 AMID 220
             +D
Sbjct: 212 FSLD 215

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
             +F    QL  L L+ N ++   +           +LK+L L FN    ++ S+  GL 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 101

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
            L+HL   H+ L    +     SL NL  LD+S             + GL  L  L + G
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAG 159

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGGLS 154
           S+F   + L  LD++                + L++L+ L +  N F  +        L 
Sbjct: 120 SVFLSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           +L  L L   +L   +     +SLS+L+ L+MS N   + +    Y+ L  L  L     
Sbjct: 176 NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLN 233

Query: 215 EIAMIDGS 222
            I      
Sbjct: 234 HIMTSKKQ 241

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLN-GSVDIKELDSLSNLEELDMSDN 189
           +   L L+ N   +        L+ L  LSL  N L+      +     ++L+ LD+S N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 190 AINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219
            +    +  ++ GL +L  L    + +  +
Sbjct: 89  GVIT--MSSNFLGLEQLEHLDFQHSNLKQM 116

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSIFSS--LGGLSSL 156
                 L+L  N +      + L      +L  L  L L  N  +     S    G +SL
Sbjct: 27  PSSATRLELESNKL------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
           K+L L  N +           L  LE LD   + +        +  LR L  L +  T  
Sbjct: 81  KYLDLSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 217 AMI 219
            + 
Sbjct: 139 RVA 141

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
              +F     LE L +  NS          D  + L NL FL L          ++   L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD--YRGLRKLNTLHL 211
           SSL+ L++ HN    S+D      L++L+ LD S N I      K         L  L+L
Sbjct: 199 SSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMT--SKKQELQHFPSSLAFLNL 255

Query: 212 GG 213
             
Sbjct: 256 TQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
              +FT  + L  LDL+   +   +     + LS   +L+ L++  N F +        L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLS---SLQVLNMSHNNFFSLDTFPYKCL 222

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSL-SNLEELDMSDNAIN 192
           +SL+ L    N +  +   +EL    S+L  L+++ N   
Sbjct: 223 NSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN-PVIPKDYRGLRKLNTLHLG 212
           SS   L L  N+L  S+     D L+ L +L +S N ++      +   G   L  L L 
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 213 GTEIAMIDG 221
              +  +  
Sbjct: 87  FNGVITMSS 95

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SL 150
              F    +L+ L L  N I   + +   +R+    +L+ L L        +      + 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIP---SLRRLDLGEL---KRLSYISEGAF 181

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH 210
            GLS+L++L+L    L    +I  L  L  L+ELD+S N ++  + P  ++GL  L  L 
Sbjct: 182 EGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLW 237

Query: 211 LGGTEIAMID 220
           +  ++I +I+
Sbjct: 238 MIQSQIQVIE 247

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 9e-13
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
           F     L  L+L   ++      + +  L+ L  L  L L  N  +     S  GL  L+
Sbjct: 181 FEGLSNLRYLNLAMCNL------REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
            L +  +++   ++    D+L +L E++++ N +    +P D +  L  L  +HL  
Sbjct: 235 KLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL--LPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 95  ASLFTPFQQLESLDLT-WNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
           +  F     L  LDL     ++  +     + LS   NL++L+L           +L  L
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLS---NLRYLNLAMCNLRE--IPNLTPL 206

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             L  L L  N L+ ++       L +L++L M  + I   +    +  L+ L  ++L  
Sbjct: 207 IKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAH 264

Query: 214 TEIAMI 219
             + ++
Sbjct: 265 NNLTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 8e-12
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 17/132 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SL 150
            + F   + LE L L+ N I   +E    + L+   NL  L L     +N + +    + 
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLA---NLNTLELF----DNRLTTIPNGAF 132

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD-NAINNPVIPKD-YRGLRKLNT 208
             LS LK L L +N +  S+     + + +L  LD+ +   ++   I +  + GL  L  
Sbjct: 133 VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSY--ISEGAFEGLSNLRY 189

Query: 209 LHLGGTEIAMID 220
           L+L    +  I 
Sbjct: 190 LNLAMCNLREIP 201

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
           F     L +L+L  N +   + N     LS    LK L L  N   +    +   + SL+
Sbjct: 108 FNGLANLNTLELFDNRLTT-IPNGAFVYLS---KLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            L L   +    +     + LSNL  L+++   +    IP +   L KL+ L L G  ++
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLS 220

Query: 218 MID 220
            I 
Sbjct: 221 AIR 223

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA 190
           N + L+L  N       +S   L  L+ L L  N +  +++I   + L+NL  L++ DN 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 191 INNPVIPKD-YRGLRKLNTLHLGGTEIAMID 220
           +    IP   +  L KL  L L    I  I 
Sbjct: 124 LTT--IPNGAFVYLSKLKELWLRNNPIESIP 152

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
            TP  +L+ LDL+ N ++             L +L+ L +  +       ++   L SL 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAIN 192
            ++L HN L   +       L +LE + +  N  N
Sbjct: 259 EINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 15/130 (11%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SL 150
           +  F    +L  L L  N I   + +   +R+    +L  L L        +      + 
Sbjct: 140 SGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVP---SLMRLDLGEL---KKLEYISEGAF 192

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH 210
            GL +LK+L+L    +    D+  L  L  LEEL+MS N     + P  + GL  L  L 
Sbjct: 193 EGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLW 248

Query: 211 LGGTEIAMID 220
           +  +++++I+
Sbjct: 249 VMNSQVSLIE 258

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 9e-13
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 10/120 (8%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
              F     L+ L+L   +I      K +  L+ L  L+ L +  N F      S  GLS
Sbjct: 189 EGAFEGLFNLKYLNLGMCNI------KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
           SLK L + +++++  ++    D L++L EL+++ N +++  +P D +  LR L  LHL  
Sbjct: 243 SLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSS--LPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 95  ASLFTPFQQLESLDLT-WNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
           +  F     L  LDL     +    E         L NLK+L+L      +    +L  L
Sbjct: 164 SYAFNRVPSLMRLDLGELKKL----EYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPL 217

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             L+ L +  N     +       LS+L++L + ++ ++  +    + GL  L  L+L  
Sbjct: 218 VGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAH 275

Query: 214 TEIAMIDGS 222
             ++ +   
Sbjct: 276 NNLSSLPHD 284

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 17/132 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SL 150
           A  F     LE L L  NSI   +E    + L+   +L  L L     +N +      + 
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLA---SLNTLELF----DNWLTVIPSGAF 143

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD-NAINNPVIPKD-YRGLRKLNT 208
             LS L+ L L +N +  S+     + + +L  LD+ +   +    I +  + GL  L  
Sbjct: 144 EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY--ISEGAFEGLFNLKY 200

Query: 209 LHLGGTEIAMID 220
           L+LG   I  + 
Sbjct: 201 LNLGMCNIKDMP 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 11/124 (8%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
           F     L +L+L  N +        +       L+ L+ L L  N   +    +   + S
Sbjct: 119 FNGLASLNTLELFDNWL------TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215
           L  L L   +    +     + L NL+ L++    I +  +P +   L  L  L + G  
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNH 229

Query: 216 IAMI 219
              I
Sbjct: 230 FPEI 233

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
                 L+L  N+I     +        L++L+ L L  N        +  GL+SL  L 
Sbjct: 74  PSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
           LF N L   +     + LS L EL + +N I +  IP   +  +  L  L LG 
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIES--IPSYAFNRVPSLMRLDLGE 180

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA 190
           N ++L+L  N        +   L  L+ L L  N +   +++   + L++L  L++ DN 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 191 INNPVIPKD-YRGLRKLNTLHLGGTEIAMI 219
           +    IP   +  L KL  L L    I  I
Sbjct: 135 LTV--IPSGAFEYLSKLRELWLRNNPIESI 162

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
            TP   LE L+++ N                L++LK L +  +  +    ++  GL+SL 
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAIN 192
            L+L HN L+ S+       L  L EL +  N  N
Sbjct: 270 ELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           S+ ++L+L  N +   +       L +LE L +  N+I   +    + GL  LNTL L  
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFD 132

Query: 214 TEIAMID 220
             + +I 
Sbjct: 133 NWLTVIP 139

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 13/127 (10%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
              LE L+L  N I        +  LS L  L  L++  N    +  S+L  L++L+ L 
Sbjct: 65  LTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTN--KITDISALQNLTNLRELY 116

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           L  + ++   DI  L +L+ +  L++  N   +         +  LN L +  +++  + 
Sbjct: 117 LNEDNIS---DISPLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 221 GSKVLIN 227
               L +
Sbjct: 172 PIANLTD 178

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 7e-14
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 L SL L +N I      + +  L+ L +L +     N    +  + +  ++ L 
Sbjct: 173 IANLTDLYSLSLNYNQI------EDISPLASLTSLHYFTAYVN--QITDITPVANMTRLN 224

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            L + +N++    D+  L +LS L  L++  N I++       + L KL  L++G  +I+
Sbjct: 225 SLKIGNNKIT---DLSPLANLSQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQIS 278

Query: 218 MIDG 221
            I  
Sbjct: 279 DISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 8e-14
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
            +L SL +  N I        L  L+ L+ L +L +  N    S  +++  L+ LK L++
Sbjct: 221 TRLNSLKIGNNKI------TDLSPLANLSQLTWLEIGTN--QISDINAVKDLTKLKMLNV 272

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221
             N+++   DI  L++LS L  L +++N + N    +   GL  L TL L    I  I  
Sbjct: 273 GSNQIS---DISVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP 328

Query: 222 SKVLIN 227
              L  
Sbjct: 329 LASLSK 334

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 L  L L  ++I        +  L+ L  +  L+L  N   + + S L  ++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLN 158

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
           +L++  +++    D+  + +L++L  L ++ N I +         L  L+       +I 
Sbjct: 159 YLTVTESKVK---DVTPIANLTDLYSLSLNYNQIED---ISPLASLTSLHYFTAYVNQIT 212

Query: 218 MIDGSKVLIN 227
            I     +  
Sbjct: 213 DITPVANMTR 222

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 8e-13
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                ++ SL+L  N     +       LS +  L +L +  +       + +  L+ L 
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTES--KVKDVTPIANLTDLY 180

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            LSL +N++    DI  L SL++L       N I +         + +LN+L +G  +I 
Sbjct: 181 SLSLNYNQIE---DISPLASLTSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKIT 234

Query: 218 MIDGSKVLIN 227
            +     L  
Sbjct: 235 DLSPLANLSQ 244

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 8e-12
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 14/127 (11%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             +     L   S+        +     L ++  L +      +     +  L++L++L+
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           L  N++    DI  L +L  L  L +  N I +       + L  L  L+L    I+ I 
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISDIS 126

Query: 221 GSKVLIN 227
               L  
Sbjct: 127 PLANLTK 133

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 9e-12
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 14/116 (12%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
               + +  L +    +        +  +  L NL++L+L+ N   +   S L  L  L 
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           +L +  N++    DI  L +L+NL EL ++++ I++         L K+ +L+LG 
Sbjct: 92  NLYIGTNKIT---DISALQNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLGA 141

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                +L+ L++  N I        +  L+ L+ L  L L+ N   N     +GGL++L 
Sbjct: 261 VKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI 191
            L L  N +    DI+ L SLS ++  D ++  I
Sbjct: 315 TLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 14/124 (11%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFH 163
             +L      I        +   + L       L      + +  +   L S+  L +  
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 164 NRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK 223
            ++     I+ ++ L+NLE L+++ N I +         L KL  L++G  +I  I   +
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITDISALQ 107

Query: 224 VLIN 227
            L N
Sbjct: 108 NLTN 111

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.5 bits (168), Expect = 6e-14
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 11/125 (8%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           A+       L  L L++NSI+  V+N  L       +L+ LHL+ N     +   L    
Sbjct: 209 AASLKGLNNLAKLGLSFNSIS-AVDNGSLANTP---HLRELHLNNNKLV-KVPGGLADHK 263

Query: 155 SLKHLSLFHNRL-----NGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNT 208
            ++ + L +N +     N           ++   + +  N +    I    +R +     
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 209 LHLGG 213
           + LG 
Sbjct: 324 VQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 30/151 (19%)

Query: 95  ASLFTPFQQLESLDLTWNSI-AGCVEN---KGLDRLSRLN---------------NLKFL 135
            S+F    Q+  ++L  N + +  +EN   +G+ +LS +                +L  L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 197

Query: 136 HLDFNWFNNSI----FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI 191
           HLD     N I     +SL GL++L  L L  N ++ +VD   L +  +L EL +++N +
Sbjct: 198 HLD----GNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL 252

Query: 192 NNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222
               +P      + +  ++L    I+ I  +
Sbjct: 253 VK--VPGGLADHKYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGG 152
               F   + L +L L  N I+  +       L     L+ L+L      N +       
Sbjct: 68  KDGDFKNLKNLHTLILINNKISK-ISPGAFAPLV---KLERLYLS----KNQLKELPEKM 119

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY-RGLRKLNTLHL 211
             +L+ L +  N +   V     + L+ +  +++  N + +  I     +G++KL+ + +
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 212 GGTEIAMID 220
             T I  I 
Sbjct: 179 ADTNITTIP 187

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
                L L +N++   +   +  +L NL  L + +N I+  + P  +  L KL  L+L  
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 109

Query: 214 TEIAMI 219
            ++  +
Sbjct: 110 NQLKEL 115

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 8e-14
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
            +  F  F +L+ LDL+   I   +E+     LS   +L  L L  N   +    +  GL
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLS---HLSTLILTGNPIQSLALGAFSGL 99

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           SSL+ L      L  S++   +  L  L+EL+++ N I +  +P+ +  L  L  L L  
Sbjct: 100 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 214 TEIAMID 220
            +I  I 
Sbjct: 159 NKIQSIY 165

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 9e-14
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
           S F   +QLE LD   +++    E      L    NL +L +       +      GLSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215
           L+ L +  N    +        L NL  LD+S   +   + P  +  L  L  L++   +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQ 505

Query: 216 IAMIDGS 222
           +  +   
Sbjct: 506 LKSVPDG 512

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 LE LDL+ N ++   +           +LK+L L FN    ++ S+  GL  L+
Sbjct: 343 EVDLPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
           HL   H+ L    +     SL NL  LD+S            + GL  L  L + G    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQ 458

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGG 152
             S+F   + L  LD++                + L++L+ L +  N F  +        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLG 212
           L +L  L L   +L   +     +SLS+L+ L+M+ N + + V    +  L  L  + L 
Sbjct: 469 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLH 526

Query: 213 G 213
            
Sbjct: 527 T 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
               ++LDL++N +   + +           L+ L L           +   LS L  L 
Sbjct: 27  PFSTKNLDLSFNPLRH-LGSYSFFSFP---ELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           L  N +  S+ +     LS+L++L   +  + + +       L+ L  L++    I    
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 221 GSKVLIN 227
             +   N
Sbjct: 141 LPEYFSN 147

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
              +F     LE L +  NS            L    NL FL L          ++   L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---NLTFLDLSQCQLEQLSPTAFNSL 493

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
           SSL+ L++  N+L  SV     D L++L+++ +  N
Sbjct: 494 SSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 20/148 (13%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN---------------NLKFLHLDFN 140
            LF     + S  L   +I    +         L                +LK L    N
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 141 WFNNSIFSSLGGLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKD 199
              N+   S   L SL+ L L  N L+      +     ++L+ LD+S N +    +  +
Sbjct: 336 KGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSN 391

Query: 200 YRGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           + GL +L  L    + +  +    V ++
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
                  + L+ L++  N I      +    L+   NL+ L L  N   +   + L  L 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT---NLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 155 SLK----HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH 210
            +      L L  N +N  +       +  L +L + +N  +  V+    +GL  L    
Sbjct: 174 QMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 211 L 211
           L
Sbjct: 232 L 232

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 12/126 (9%)

Query: 93  MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSLG 151
           +    F+    L+ L     ++A  +EN  +  L     LK L++  N   +  +     
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK---TLKELNVAHNLIQSFKLPEYFS 146

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLE----ELDMSDNAINNPVIPKDYRGLRKLN 207
            L++L+HL L  N++  S+   +L  L  +      LD+S N +N   I        +L+
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLH 203

Query: 208 TLHLGG 213
            L L  
Sbjct: 204 KLTLRN 209

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 5/119 (4%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
           +L  L L  N  +  V    +  L+ L   + +  +F    N        L  L +L++ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 163 HNRLN-----GSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
             RL          I   + L+N+    +    I          G + L  ++    + 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSIFSSLGG 152
             +FT  + L  LDL+   +      + L     + L++L+ L++  N   +        
Sbjct: 463 PDIFTELRNLTFLDLSQCQL------EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 153 LSSLKHLSLFHNRLNGS 169
           L+SL+ + L  N  + S
Sbjct: 517 LTSLQKIWLHTNPWDCS 533

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 1e-13
 Identities = 40/130 (30%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 +  L L  N +        +  L+ L NL +L LD N       SSL  L  LK
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDEN--KIKDLSSLKDLKKLK 112

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            LSL HN ++   DI  L  L  LE L + +N I +         L KL+TL L   +I+
Sbjct: 113 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIS 166

Query: 218 MIDGSKVLIN 227
            I     L  
Sbjct: 167 DIVPLAGLTK 176

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.2 bits (166), Expect = 1e-13
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 26/144 (18%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLN----------------NLKFLHLDFNWFNN 144
           F +    +L   S+   V    L+ + ++                 N+  L L+ N    
Sbjct: 20  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN--KL 77

Query: 145 SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN-PVIPKDYRGL 203
           +    L  L +L  L L  N++    D+  L  L  L+ L +  N I++   +      L
Sbjct: 78  TDIKPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISDINGLVH----L 130

Query: 204 RKLNTLHLGGTEIAMIDGSKVLIN 227
            +L +L+LG  +I  I     L  
Sbjct: 131 PQLESLYLGNNKITDITVLSRLTK 154

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 4e-12
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
            T  + L  L L  N I      K L  L  L  LK L L+ N  ++   + L  L  L+
Sbjct: 83  LTNLKNLGWLFLDENKI------KDLSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLE 134

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            L L +N++    DI  L  L+ L+ L + DN I++  I     GL KL  L+L    I+
Sbjct: 135 SLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISD--IV-PLAGLTKLQNLYLSKNHIS 188

Query: 218 MIDGSKVLIN 227
            +     L N
Sbjct: 189 DLRALAGLKN 198

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 4e-11
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI--FSSLGGLSSLKH 158
             QLESL L  N I        +  LSRL  L  L L+    +N I     L GL+ L++
Sbjct: 130 LPQLESLYLGNNKI------TDITVLSRLTKLDTLSLE----DNQISDIVPLAGLTKLQN 179

Query: 159 LSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           L L  N ++   D++ L  L NL+ L++      N  I      L   NT+  
Sbjct: 180 LYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSN-LVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 1e-09
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELD 185
                     +L     + +   +   L+S+  +   ++ +     ++ +  L N+ +L 
Sbjct: 17  DDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 71

Query: 186 MSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           ++ N + +  I K    L+ L  L L   +I  +   K L  
Sbjct: 72  LNGNKLTD--I-KPLTNLKNLGWLFLDENKIKDLSSLKDLKK 110

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 143 NNSI--FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY 200
           +  I         +     +L    +    D    + L++++++  +++ I +  + +  
Sbjct: 8   STPIKQIFPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS--V-QGI 61

Query: 201 RGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           + L  +  L L G ++  I     L N
Sbjct: 62  QYLPNVTKLFLNGNKLTDIKPLTNLKN 88

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
            T   Q+ +L      I      K +D +  LNNL  ++   N    +  + L  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNN--QLTDITPLKNLTKLV 93

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            + + +N++    DI  L +L+NL  L + +N I +       + L  LN L L    I+
Sbjct: 94  DILMNNNQIA---DITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTIS 147

Query: 218 MIDGSKVLIN 227
            I     L +
Sbjct: 148 DISALSGLTS 157

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 14/127 (11%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
              L+ L L  N +      K +  L+ L NL  L L  N    S  + L GL+ L  L 
Sbjct: 220 LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANN--QISNLAPLSGLTKLTELK 271

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           L  N+++   +I  L  L+ L  L++++N + +         L+ L  L L    I+ I 
Sbjct: 272 LGANQIS---NISPLAGLTALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISDIS 325

Query: 221 GSKVLIN 227
               L  
Sbjct: 326 PVSSLTK 332

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
              L  ++ + N +        +  L  L  L  + ++ N    +  + L  L++L  L+
Sbjct: 67  LNNLTQINFSNNQL------TDITPLKNLTKLVDILMNNN--QIADITPLANLTNLTGLT 118

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLG 212
           LF+N++    DI  L +L+NL  L++S N I++        GL  L  L  G
Sbjct: 119 LFNNQIT---DIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFG 164

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
            +   +L  L L  N I        +  L+ L  L  L L+ N   +   S +  L +L 
Sbjct: 261 LSGLTKLTELKLGANQI------SNISPLAGLTALTNLELNENQLED--ISPISNLKNLT 312

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
           +L+L+ N ++   DI  + SL+ L+ L   +N +++         L  +N L  G  +I+
Sbjct: 313 YLTLYFNNIS---DISPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQIS 366

Query: 218 MIDGSKVLIN 227
            +     L  
Sbjct: 367 DLTPLANLTR 376

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 5e-12
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 14/127 (11%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             +     L   ++            + L+ +  L  D           +  L++L  ++
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQIN 74

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
             +N+L    DI  L +L+ L ++ M++N I +         L  L  L L   +I  ID
Sbjct: 75  FSNNQLT---DITPLKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITDID 128

Query: 221 GSKVLIN 227
             K L N
Sbjct: 129 PLKNLTN 135

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 15/124 (12%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                +L  + +  N I        +  L+ L NL  L L  N   +     L  L++L 
Sbjct: 86  LKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLN 137

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            L L  N ++   DI  L  L++L++L   +   +   +      L  L  L +   +++
Sbjct: 138 RLELSSNTIS---DISALSGLTSLQQLSFGNQVTDLKPL----ANLTTLERLDISSNKVS 190

Query: 218 MIDG 221
            I  
Sbjct: 191 DISV 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 23/145 (15%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN---------------NLKFLHLDFNWF 142
                 L  L+L+ N+I+      GL  L +L+                L+ L +  N  
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-- 187

Query: 143 NNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRG 202
             S  S L  L++L+ L   +N+++   DI  L  L+NL+EL ++ N + +         
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGT---LAS 241

Query: 203 LRKLNTLHLGGTEIAMIDGSKVLIN 227
           L  L  L L   +I+ +     L  
Sbjct: 242 LTNLTDLDLANNQISNLAPLSGLTK 266

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
            +  + L  L L +N+I        +  +S L  L+ L    N  ++   SSL  L+++ 
Sbjct: 305 ISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209
            LS  HN+++   D+  L +L+ + +L ++D A  N   P +Y+    +   
Sbjct: 357 WLSAGHNQIS---DLTPLANLTRITQLGLNDQAWTN--APVNYKANVSIPNT 403

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 +  L    N I        L  L+ L  +  L L+   + N+  +     +++ 
Sbjct: 349 LANLTNINWLSAGHNQI------SDLTPLANLTRITQLGLNDQAWTNAPVNY---KANVS 399

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNP 194
             +   N     +    +    +  E D++ N  +  
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 8/87 (9%)

Query: 143 NNSI--FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY 200
           +  I    +   L+      L    +    D      L  +  L      I +       
Sbjct: 11  DTPINQIFTDTALAEKMKTVLGKTNVT---DTVSQTDLDQVTTLQADRLGIKS---IDGV 64

Query: 201 RGLRKLNTLHLGGTEIAMIDGSKVLIN 227
             L  L  ++    ++  I   K L  
Sbjct: 65  EYLNNLTQINFSNNQLTDITPLKNLTK 91

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             +   LDL  N I    +    D  +   +L+ L L+ N  +     +   L +L+ L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           L  NRL   + +     LSNL +LD+S+N I   ++   ++ L  L +L +G  ++  I 
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYIS 144

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
                +    L  L L   +I   + +    RL     LK L +    + +++  +    
Sbjct: 168 PTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLY---RLKVLEISHWPYLDTMTPNCLYG 223

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLG 212
            +L  LS+ H  L  +V    +  L  L  L++S N I+   I       L +L  + L 
Sbjct: 224 LNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLV 280

Query: 213 GTEIAMID 220
           G ++A+++
Sbjct: 281 GGQLAVVE 288

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 7e-13
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
           N   F  F  LE L+L  N ++  VE    + L    NL+ L L  N           GL
Sbjct: 48  NQDEFASFPHLEELELNENIVSA-VEPGAFNNLF---NLRTLGLRSNRLKLIPLGVFTGL 103

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           S+L  L +  N++   +       L NL+ L++ DN +   +  + + GL  L  L L  
Sbjct: 104 SNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEK 161

Query: 214 TEIAMID 220
             +  I 
Sbjct: 162 CNLTSIP 168

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 26/148 (17%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVEN---KGLDRLSRLN------------------NLK 133
             +F     L+SL++  N +   + +    GL+ L +L                    L 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 134 FLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN 193
            L L     N     S   L  LK L + H     ++    L  L NL  L ++   +  
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTA 238

Query: 194 PVIPKD-YRGLRKLNTLHLGGTEIAMID 220
             +P    R L  L  L+L    I+ I+
Sbjct: 239 --VPYLAVRHLVYLRFLNLSYNPISTIE 264

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 14/114 (12%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN---WFNNSIFSSLGGLSSLKHLS 160
           L SL +T  ++   V    +  L     L+FL+L +N       S+      L  L+ + 
Sbjct: 226 LTSLSITHCNLTA-VPYLAVRHLV---YLRFLNLSYNPISTIEGSMLH---ELLRLQEIQ 278

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
           L   +L   V+      L+ L  L++S N +    + +  +  +  L TL L  
Sbjct: 279 LVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTT--LEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 24/133 (18%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI----FSSL 150
              F    +L+ L+++       +    L  L    NL  L +     + ++    + ++
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL----NLTSLSIT----HCNLTAVPYLAV 244

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTL 209
             L  L+ L+L +N ++ +++   L  L  L+E+ +    +    +    +RGL  L  L
Sbjct: 245 RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAV--VEPYAFRGLNYLRVL 301

Query: 210 HLGGTEIAMIDGS 222
           ++ G ++  ++ S
Sbjct: 302 NVSGNQLTTLEES 314

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SL 150
           A+ FT    LE LDL+ N+    V+      L     L  LHLD       +        
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG---RLHTLHLD----RCGLQELGPGLF 125

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTL 209
            GL++L++L L  N L  ++       L NL  L +  N I++  +P+  +RGL  L+ L
Sbjct: 126 RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRL 182

Query: 210 HLGGTEIAMID 220
            L    +A + 
Sbjct: 183 LLHQNRVAHVH 193

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 17/131 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL---- 150
           A+ F   + L  L L  N +A  ++      L+    L+ L L     +N+   S+    
Sbjct: 49  AASFRACRNLTILWLHSNVLA-RIDAAAFTGLA---LLEQLDLS----DNAQLRSVDPAT 100

Query: 151 -GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNT 208
             GL  L  L L    L   +       L+ L+ L + DNA+    +P D +R L  L  
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTH 157

Query: 209 LHLGGTEIAMI 219
           L L G  I+ +
Sbjct: 158 LFLHGNRISSV 168

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 8/120 (6%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
             LF     L+ L L  N++   + +     L    NL  L L  N  ++    +  GL 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQA-LPDDTFRDLG---NLTHLFLHGNRISSVPERAFRGLH 177

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
           SL  L L  NR+   V       L  L  L +  N ++   +P +    LR L  L L  
Sbjct: 178 SLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SL 150
            + F    +L +L L    +   +          L  L++L+L     +N++ +    + 
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQ-ELGP---GLFRGLAALQYLYLQ----DNALQALPDDTF 149

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTL 209
             L +L HL L  NR++ SV  +    L +L+ L +  N + +  +    +R L +L TL
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH--VHPHAFRDLGRLMTL 206

Query: 210 HLGGTEIAMI 219
           +L    ++ +
Sbjct: 207 YLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFH 163
            + + L  N I+    +          NL  L L  N       ++  GL+ L+ L L  
Sbjct: 34  SQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 164 NRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGGTEIAMI 219
           N    SVD      L  L  L +    +    +    +RGL  L  L+L    +  +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDNALQAL 144

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA 190
             + + L  N  ++   +S     +L  L L  N L   +D      L+ LE+LD+SDNA
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNA 91

Query: 191 INNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
               V P  + GL +L+TLHL    +  + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
              F     L  L L  N I+   E         L++L  L L  N   +    +   L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
            L  L LF N L+ ++  + L  L  L+ L ++DN
Sbjct: 202 RLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
           ++L  L+  +N + G +             L  L+L +N       +  G    +++LS 
Sbjct: 330 KKLGMLECLYNQLEGKLPA-----FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAINN------PVIPKDYRGLRKLNTLHLGGTE 215
            HN+L    +I +  S+S +  +D S N I +        +         +++++L   +
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 216 I 216
           I
Sbjct: 445 I 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 27/174 (15%), Positives = 45/174 (25%), Gaps = 13/174 (7%)

Query: 43  NGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLA--QIRKWESAEWYMNASLFTP 100
            G Q   NW  ++          V  N   GRV  L L                      
Sbjct: 52  FGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDA-------IGQ 103

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             +LE L L  +         G   +S   + +        +  +             + 
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 161 LFHNRLNGSVDIKELDSLS-NLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
              N       IK+   ++    ++    N I    + K    L KL   ++G 
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGN 215

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 13/123 (10%)

Query: 102 QQLESLDLTWNSIAGCVENKGL---DRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKH 158
             + ++D ++N I                +  N+  ++L  N  +          S L  
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 159 LSLFHNRLNG------SVDIKELDSLSNLEELDMSDNAINNPVIPKD--YRGLRKLNTLH 210
           ++L  N L          + +   +   L  +D+  N +    +  D     L  L  + 
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGID 519

Query: 211 LGG 213
           L  
Sbjct: 520 LSY 522

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 13/132 (9%), Positives = 47/132 (35%), Gaps = 17/132 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN-------NSIF 147
           A+     +Q+E+L    N +              ++ +  +   +N          + + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFD---AKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 148 SSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI------NNPVIPKDYR 201
            +     ++  ++L +N+++     +   + S L  +++  N +      +     ++++
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 202 GLRKLNTLHLGG 213
               L ++ L  
Sbjct: 486 NTYLLTSIDLRF 497

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-------WFNNSIFSSLGGL 153
              + S++L+ N I+   +       S  + L  ++L  N               +    
Sbjct: 432 GINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
             L  + L  N+L    D     +L  L  +D+S N+ +    P        L    +
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGI 543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 14/124 (11%), Positives = 38/124 (30%), Gaps = 14/124 (11%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWF--------NNSIFSS 149
           +   + L  +++        +       L  L  ++ +++  N          +    + 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209
                 ++ + + +N L        L  +  L  L+   N +        +    KL +L
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG--KLPAFGSEIKLASL 358

Query: 210 HLGG 213
           +L  
Sbjct: 359 NLAY 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 9/119 (7%), Positives = 36/119 (30%), Gaps = 17/119 (14%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
            +L    +  +              +     +  + ++     +       L  L  + +
Sbjct: 206 TKLRQFYMGNSPFVA---------ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAI-------NNPVIPKDYRGLRKLNTLHLGG 213
           ++      +    L +L  ++ ++++ N         ++     D     K+  +++G 
Sbjct: 257 YNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 14/137 (10%), Positives = 47/137 (34%), Gaps = 21/137 (15%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN-NLKFLHLDFNWFNNSIFSSLGGLS 154
           +      + +  DL  + I    + K + + SR+      +    N     +  ++  L+
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLT 206

Query: 155 SLKHLSLFHNRLNGSVDIK------------------ELDSLSNLEELDMSDNAINNPVI 196
            L+   + ++        +                  + D+L +L ++++ +       +
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-L 265

Query: 197 PKDYRGLRKLNTLHLGG 213
           P   + L ++  +++  
Sbjct: 266 PTFLKALPEMQLINVAC 282

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 21/127 (16%), Positives = 34/127 (26%), Gaps = 10/127 (7%)

Query: 98  FTPFQQLESLDLTWNSIAG---CVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
            T    L  +DL++NS +       N     L             N         +    
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLN--SSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           SL  L +  N +    +        N+  LD+ DN   +           +     L   
Sbjct: 567 SLTQLQIGSNDIRKVNE----KITPNISVLDIKDNPNISI-DLSYVCPYIEAGMYMLFYD 621

Query: 215 EIAMIDG 221
           +   I G
Sbjct: 622 KTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 1/103 (0%)

Query: 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELD 185
           L+    +  L L+    +  +  ++G L+ L+ L+L  +    +  +     +S     +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 186 MSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLINS 228
                  +           + +   L    I      K +  S
Sbjct: 137 QKQKMRMH-YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.1 bits (164), Expect = 3e-13
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 91  WYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF--- 147
           +Y  +++++  ++++ + +  + +   V          L +L+FL L  N          
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKV-FLVPC---SFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 148 SSLGGLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL 206
           +  G   SL+ L L  N L       + L +L NL  LD+S N  +   +P   +   K+
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSCQWPEKM 412

Query: 207 NTLHLGGTEIAMID 220
             L+L  T I ++ 
Sbjct: 413 RFLNLSSTGIRVVK 426

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 6e-11
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
              ++SLDL++N I       G   L    NL+ L L  +  N     +   L SL+HL 
Sbjct: 25  TAAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           L  N L+ S+       LS+L+ L++  N      +   +  L  L TL +G 
Sbjct: 81  LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 28/137 (20%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN---WFNNSIFSSL- 150
             +    + L SLD++ N+          D       ++FL+L           I  +L 
Sbjct: 380 GEILLTLKNLTSLDISRNTFHPM-----PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 434

Query: 151 -------------GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP 197
                          L  L+ L +  N+L     + +      L  + +S N + +  +P
Sbjct: 435 VLDVSNNNLDSFSLFLPRLQELYISRNKLK---TLPDASLFPVLLVMKISRNQLKS--VP 489

Query: 198 KD-YRGLRKLNTLHLGG 213
              +  L  L  + L  
Sbjct: 490 DGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 93  MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF-SSLG 151
           +++S F P   L+ L+L  N     +    L     L NL+ L +      + I      
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL--FPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           GL+SL  L +    L  +   + L S+ ++  L +  +     ++      L  +  L L
Sbjct: 146 GLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLEL 203

Query: 212 GGTEIAMIDGS 222
             T +A    S
Sbjct: 204 RDTNLARFQFS 214

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 8/125 (6%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
                 L+ L L  + I        ++      L +L+ L L  N  ++   S  G LSS
Sbjct: 46  LRACANLQVLILKSSRI------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215
           LK+L+L  N            +L+NL+ L + +    + +   D+ GL  LN L +    
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 216 IAMID 220
           +    
Sbjct: 160 LRNYQ 164

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD 188
              +K L L FN         L   ++L+ L L  +R+N +++     SL +LE LD+SD
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 189 NAINNPVIPKDY-RGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           N +++  +   +   L  L  L+L G     +  + +  N
Sbjct: 84  NHLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWF-NNSIFS----SLGGLSSL 156
            ++E  D T N + G       D +S L  ++ + +         +F         L  +
Sbjct: 254 SEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVI--PKDYRGLRKLNTLHLGGT 214
           K +++ ++++   V       L +LE LD+S+N +    +           L TL L   
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 215 EIAMID 220
            +  + 
Sbjct: 372 HLRSMQ 377

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
            Q LE LD++ N++              L  L+ L++  N               L  + 
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF--------LPRLQELYISRNKL--KTLPDASLFPVLLVMK 479

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDN 189
           +  N+L  SV     D L++L+++ +  N
Sbjct: 480 ISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
           S      +L+ L ++ N +      K L   S    L  + +  N   +        L+S
Sbjct: 445 SFSLFLPRLQELYISRNKL------KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 156 LKHLSLFHNRLN 167
           L+ + L  N  +
Sbjct: 499 LQKIWLHTNPWD 510

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 14/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 + +L      +        ++ +  LNNL  L L  N   +   + L  L+ + 
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            L L  N L    ++  +  L +++ LD++   I +        GL  L  L+L   +I 
Sbjct: 89  ELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQIT 142

Query: 218 MIDGSKVLIN 227
            I     L N
Sbjct: 143 NISPLAGLTN 152

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 7e-12
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                ++  L+L+ N +      K +  ++ L ++K L L       +  + L GLS+L+
Sbjct: 81  LKNLTKITELELSGNPL------KNVSAIAGLQSIKTLDLTST--QITDVTPLAGLSNLQ 132

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            L L  N++    +I  L  L+NL+ L + +  +++  +      L KL TL     +I+
Sbjct: 133 VLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSD--LT-PLANLSKLTTLKADDNKIS 186

Query: 218 MIDGSKVLIN 227
            I     L N
Sbjct: 187 DISPLASLPN 196

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 L+ L +    +        L  L+ L+ L  L  D N    S  S L  L +L 
Sbjct: 147 LAGLTNLQYLSIGNAQV------SDLTPLANLSKLTTLKADDN--KISDISPLASLPNLI 198

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            + L +N+++   D+  L + SNL  + +++  I N  +  +   +         G  IA
Sbjct: 199 EVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELD 185
              L N   +    +  N +   +   L  +  LS F   +     I+ +  L+NL  L+
Sbjct: 15  DPALANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 186 MSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           + DN I +       + L K+  L L G  +  +     L +
Sbjct: 70  LKDNQITD---LAPLKNLTKITELELSGNPLKNVSAIAGLQS 108

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 1e-12
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 13/163 (7%)

Query: 67  ECNETIGRVIKLDLAQIRKWESAEWYMNAS---LFTPFQQLESLDLTWNSIAGCVENKGL 123
           E  +    +  +D  +    +            L   +  +  L L    +        L
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL------TVL 456

Query: 124 DRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEE 183
             L +L  +  L L  N    ++  +L  L  L+ L    N L    ++  + +L  L+E
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQE 512

Query: 184 LDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLI 226
           L + +N +      +      +L  L+L G  +   +G +  +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 119 ENKGLDRLSRLNNLKFLHLDFNWFNNSIF-----SSLGGLSSLKHLSLFHNRLNGSVDIK 173
           E + L   S L  +  +   +     S F           + ++ L L H  L     + 
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL---TVLC 457

Query: 174 ELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLIN 227
            L+ L  +  LD+S N +    +P     LR L  L      +  +DG   L  
Sbjct: 458 HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPR 509

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 16/131 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           A+   PF +LE L+L+ N +           L  L+ L+ L L+    NN +   L    
Sbjct: 51  AADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLN----NNYV-QELLVGP 99

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           S++ L   +N ++    +         + + +++N I   +   D     ++  L L   
Sbjct: 100 SIETLHAANNNIS---RV-SCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN 154

Query: 215 EIAMIDGSKVL 225
           EI  ++ +++ 
Sbjct: 155 EIDTVNFAELA 165

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 10/123 (8%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSLGGLSSLKHL 159
            Q  +++ L  N I    +          + +++L L  N  +  +         +L+HL
Sbjct: 119 GQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 160 SLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219
           +L +N +    D+K     + L+ LD+S N +    +  +++    +  + L   ++ +I
Sbjct: 175 NLQYNFI---YDVKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLI 229

Query: 220 DGS 222
           + +
Sbjct: 230 EKA 232

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
            + +   +T +S+   + +          N+K L L  N  +    + L   + L+ L+L
Sbjct: 10  NRYKIEKVTDSSLKQALASL----RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221
             N L    +  +L+SLS L  LD+++N +    +         + TLH     I+ +  
Sbjct: 66  SSNVLY---ETLDLESLSTLRTLDLNNNYVQE--LLV----GPSIETLHAANNNISRVSC 116

Query: 222 S 222
           S
Sbjct: 117 S 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 13/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 L +LDL  N +           L    +++ LH   N  +     S       K
Sbjct: 76  LESLSTLRTLDLNNNYVQ---------ELLVGPSIETLHAANNNISRV---SCSRGQGKK 123

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
           ++ L +N++   +   +    S ++ LD+  N I+     +       L  L+L    I 
Sbjct: 124 NIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 218 MIDGSKVLIN 227
            + G  V   
Sbjct: 183 DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
            A L      LE L+L +N I        +        LK L L  N     +       
Sbjct: 161 FAELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           + +  +SL +N+L   ++ K L    NLE  D+  N  +   +   +   +++ T+  
Sbjct: 214 AGVTWISLRNNKLV-LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           ASL      ++ LDL+ N ++          L+    L+ L+L  N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           +L+ L L +N       ++EL    ++E L  ++N I+   +       +    ++L   
Sbjct: 81  TLRTLDLNNNY------VQELLVGPSIETLHAANNNISR--VSCSR--GQGKKNIYLANN 130

Query: 215 EIAMID 220
           +I M+ 
Sbjct: 131 KITMLR 136

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                +++ LDL  N I   V    L   +  + L+ L+L +N+            + LK
Sbjct: 140 EGCRSRVQYLDLKLNEIDT-VNFAEL--AASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
            L L  N+L   +   E  S + +  + + +N +    I K  R  + L    L G
Sbjct: 195 TLDLSSNKLA-FMG-PEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD 188
            N  K   +  +    ++ S      ++K L L  N L+  +   +L   + LE L++S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 189 NAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225
           N +       D   L  L TL L    +  +     +
Sbjct: 68  NVLYE---TLDLESLSTLRTLDLNNNYVQELLVGPSI 101

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 29/150 (19%)

Query: 95  ASLFTPFQQLESLDLTWNSIA-GCVENKGLD--RLSRLN---------------NLKFLH 136
             +F+  + +  +++  N +     E    D  +L+ L                 L  LH
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199

Query: 137 LDFNWFNNSI----FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAIN 192
           LD    +N I       L   S L  L L HN++   ++   L  L  L EL + +N ++
Sbjct: 200 LD----HNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS 254

Query: 193 NPVIPKDYRGLRKLNTLHLGGTEIAMIDGS 222
              +P     L+ L  ++L    I  +  +
Sbjct: 255 R--VPAGLPDLKLLQVVYLHTNNITKVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 11/124 (8%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
                 + +L  L L  N I   +EN  L  L     L+ LHLD N  +  + + L  L 
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLP---TLRELHLDNNKLS-RVPAGLPDLK 264

Query: 155 SLKHLSLFHNRL-----NGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNT 208
            L+ + L  N +     N    +      +    + + +N +    +    +R +     
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 209 LHLG 212
           +  G
Sbjct: 325 IQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 10/126 (7%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGGL 153
              F   Q L +L L  N I+  +  K    L     L+ L++      N +        
Sbjct: 71  KDDFKGLQHLYALVLVNNKISK-IHEKAFSPLR---KLQKLYIS----KNHLVEIPPNLP 122

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           SSL  L +  NR+   V       L N+  ++M  N + N           KLN L +  
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 214 TEIAMI 219
            ++  I
Sbjct: 182 AKLTGI 187

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 15/127 (11%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
            + L  L L  N I    +   L+ L R + L  L L  N        SL  L +L+ L 
Sbjct: 192 PETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-------YRGLRKLNTLHLGG 213
           L +N+L+  V    L  L  L+ + +  N I    +  +              N + L  
Sbjct: 248 LDNNKLS-RVP-AGLPDLKLLQVVYLHTNNITK--VGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 214 TEIAMID 220
             +   +
Sbjct: 304 NPVPYWE 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
                L L +N ++  +   +   L +L  L + +N I+  +  K +  LRKL  L++  
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISK 111

Query: 214 TEIAMI 219
             +  I
Sbjct: 112 NHLVEI 117

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           A+L   F+Q+E L+L    I            +  + ++ L++ FN            + 
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
            L  L L  N L+ S+      +   L  L MS+N +    I  D ++    L  L L  
Sbjct: 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSS 174

Query: 214 TEIAMID 220
             +  +D
Sbjct: 175 NRLTHVD 181

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             +L  L L  N++           L     L  + L +N     ++     +  L+ L 
Sbjct: 225 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           + +NRL  +++      +  L+ LD+S N + +  + ++     +L  L+L    I  + 
Sbjct: 279 ISNNRLV-ALN-LYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK 334

Query: 221 GS 222
            S
Sbjct: 335 LS 336

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 14/124 (11%), Positives = 42/124 (33%), Gaps = 8/124 (6%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                  + +    +++           L     ++ L+L+          +     +++
Sbjct: 41  DITLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGGTEI 216
            L +  N +   +      ++  L  L +  N +++  +P+  +    KL TL +    +
Sbjct: 97  KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNL 153

Query: 217 AMID 220
             I+
Sbjct: 154 ERIE 157

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 18/132 (13%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
           +   F     ++ L + +N+I   +          +  L  L L+ N  ++         
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRY-LPP---HVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             L  LS+ +N L   ++     + ++L+ L +S N + +  +      +  L   ++  
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH--VDLS--LIPSLFHANVSY 195

Query: 214 TEIAMIDGSKVL 225
             ++ +     +
Sbjct: 196 NLLSTLAIPIAV 207

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 19/126 (15%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
              F     L++L L+ N +        +D LS + +L   ++ +N       S+L    
Sbjct: 158 DDTFQATTSLQNLQLSSNRL------THVD-LSLIPSLFHANVSYNLL-----STLAIPI 205

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           +++ L   HN +N    +        L  L +  N + +            L  + L   
Sbjct: 206 AVEELDASHNSIN----VVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYN 258

Query: 215 EIAMID 220
           E+  I 
Sbjct: 259 ELEKIM 264

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGGL 153
             +F    +L +L ++ N++    E    D      +L+ L L     +N +    L  +
Sbjct: 134 RGIFHNTPKLTTLSMSNNNL----ERIEDDTFQATTSLQNLQLS----SNRLTHVDLSLI 185

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
            SL H ++ +N       +  L     +EELD S N+IN   +        +L  L L  
Sbjct: 186 PSLFHANVSYNL------LSTLAIPIAVEELDASHNSINV--VRGP--VNVELTILKLQH 235

Query: 214 TEIAMID 220
             +    
Sbjct: 236 NNLTDTA 242

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 124 DRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEE 183
             L        +H+D    +         L++ K ++  ++ +   +    LDS   +E 
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 73

Query: 184 LDMSDNAINNPVIPKD-YRGLRKLNTLHLGGTEIAMID 220
           L+++D  I    I    +     +  L++G   I  + 
Sbjct: 74  LNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLP 109

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 12/118 (10%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDR-LSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
              F   Q+LE L ++ N +        L+     +  LK L L  N     +  +    
Sbjct: 265 YHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
             L++L L HN +   V +K L +   L+ L +S N  +   +   +R + +      
Sbjct: 318 DRLENLYLDHNSI---VTLK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGGLSSLKHLSLF 162
           +  +DL+ NSIA  +      RL    +L+FL ++       I + +  GLSSL  L L 
Sbjct: 32  VNYVDLSLNSIAE-LNETSFSRLQ---DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY-RGLRKLNTLHLGGTEIAMID 220
           +N+    ++    + L+NLE L ++   ++  V+  ++ + L  L  L L    I  I 
Sbjct: 88  YNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 8/129 (6%)

Query: 94  NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
           N + F+  Q L+ L +   +    + N     LS   +L  L LD+N F      +  GL
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS---SLIILKLDYNQFLQLETGAFNGL 102

Query: 154 SSLKHLSLFHNRLNGSVDIKE--LDSLSNLEELDMSDNAINNPVIPKDY-RGLRKLNTLH 210
           ++L+ L+L    L+    +       L++LE L + DN I   + P  +   +R+ + L 
Sbjct: 103 ANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLD 160

Query: 211 LGGTEIAMI 219
           L   ++  I
Sbjct: 161 LTFNKVKSI 169

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.1 bits (138), Expect = 8e-10
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 14/123 (11%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN---WFNNSIFSSLG 151
            S+F+ F  LE L L  N I   +++     L+   +L  L+L  N     ++ +F    
Sbjct: 292 KSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLT---HLLKLNLSQNFLGSIDSRMFE--- 344

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLH 210
            L  L+ L L +N +  ++  +    L NL+EL +  N + +  +P   +  L  L  + 
Sbjct: 345 NLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKS--VPDGIFDRLTSLQKIW 401

Query: 211 LGG 213
           L  
Sbjct: 402 LHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 20/134 (14%)

Query: 99  TPFQQLESLDLTWNSIAGCV----ENKGLDRLS----RLNNLKFLHLDFNWFNNSIFS-- 148
               +++SL L+ +   G        K  D  +      + +K   L      + IF+  
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS----KSKIFALL 291

Query: 149 --SLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRK 205
                  + L+ L+L  N +N  +D      L++L +L++S N + +  I    +  L K
Sbjct: 292 KSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGS--IDSRMFENLDK 348

Query: 206 LNTLHLGGTEIAMI 219
           L  L L    I  +
Sbjct: 349 LEVLDLSYNHIRAL 362

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLH----------LDFNWFNNSIF 147
                 + +LDL+ N        K          ++ L                F +   
Sbjct: 208 PFKNTSITTLDLSGNGFK-ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 148 SSLGGL--SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLR 204
            +  GL  S +K   L  +++  ++        ++LE+L ++ N IN   I  + + GL 
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLT 323

Query: 205 KLNTLHLGGTEIAMID 220
            L  L+L    +  ID
Sbjct: 324 HLLKLNLSQNFLGSID 339

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN---WFNNSIFSSLGGLS 154
           F     L  L+L+ N + G ++++  + L     L+ L L +N      +  F    GL 
Sbjct: 319 FWGLTHLLKLNLSQNFL-GSIDSRMFENLD---KLEVLDLSYNHIRALGDQSFL---GLP 371

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
           +LK L+L  N+L  SV     D L++L+++ +  N
Sbjct: 372 NLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA 190
           ++ ++ L  N       +S   L  L+ L +        +       LS+L  L +  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 191 INNPVIPKD-YRGLRKLNTLHLGGTEI 216
                +    + GL  L  L L    +
Sbjct: 91  FLQ--LETGAFNGLANLEVLTLTQCNL 115

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLS-------RLNNLKFLHLDFNWFNNSIF 147
           AS F   ++   LDLT+N +   +  + L           RL+++    ++  W      
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 148 SSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207
            +    +S+  L L  N    S+  +  D+++  +   +  +   N      +   +  +
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 208 TLHLGG 213
                G
Sbjct: 266 NFTFKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
           + + ++ L  N +   ++      L +L+ L +        +    +RGL  L  L L  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 214 TEIAMID 220
            +   ++
Sbjct: 89  NQFLQLE 95

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.4 bits (154), Expect = 6e-12
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           A+L   F+Q+E L+L    I            +  + ++ L++ FN            + 
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
            L  L L  N L+ S+      +   L  L MS+N +    I  D ++    L  L L  
Sbjct: 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSS 180

Query: 214 TEIAMID 220
             +  +D
Sbjct: 181 NRLTHVD 187

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             +L  L L  N++           L     L  + L +N     ++     +  L+ L 
Sbjct: 231 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           + +NRL  +++      +  L+ LD+S N + +  + ++     +L  L+L    I  + 
Sbjct: 285 ISNNRLV-ALN-LYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK 340

Query: 221 GS 222
            S
Sbjct: 341 LS 342

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 14/126 (11%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                  + +    +++           L     ++ L+L+          +     +++
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGGTEI 216
            L +  N +   +      ++  L  L +  N +++  +P+  +    KL TL +    +
Sbjct: 103 KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNL 159

Query: 217 AMIDGS 222
             I+  
Sbjct: 160 ERIEDD 165

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 19/126 (15%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
              F     L++L L+ N +        +D LS + +L   ++ +N       S+L    
Sbjct: 164 DDTFQATTSLQNLQLSSNRL------THVD-LSLIPSLFHANVSYNLL-----STLAIPI 211

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           +++ L   HN +N    +        L  L +  N + +            L  + L   
Sbjct: 212 AVEELDASHNSIN----VVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYN 264

Query: 215 EIAMID 220
           E+  I 
Sbjct: 265 ELEKIM 270

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 124 DRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEE 183
             L        +H+D    +         L++ K ++  ++ +   +    LDS   +E 
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 79

Query: 184 LDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           L+++D  I   +    +     +  L++G   I  + 
Sbjct: 80  LNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLP 115

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 12/118 (10%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDR-LSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
              F   Q+LE L ++ N +        L+     +  LK L L  N     +  +    
Sbjct: 271 YHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
             L++L L HN +   V + +L +   L+ L +S N  +   +   +R + +      
Sbjct: 324 DRLENLYLDHNSI---VTL-KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 377

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.4 bits (152), Expect = 7e-12
 Identities = 40/130 (30%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 +  L L  N +        +  L+ L NL +L LD N       SSL  L  LK
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDEN--KVKDLSSLKDLKKLK 115

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            LSL HN ++   DI  L  L  LE L + +N I +         L KL+TL L   +I+
Sbjct: 116 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIS 169

Query: 218 MIDGSKVLIN 227
            I     L  
Sbjct: 170 DIVPLAGLTK 179

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
              ++ +    + I      K +  +  L N+  L L+ N    +    L  L +L  L 
Sbjct: 45  LNSIDQIIANNSDI------KSVQGIQYLPNVTKLFLNGN--KLTDIKPLANLKNLGWLF 96

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           L  N++    D+  L  L  L+ L +  N I++         L +L +L+LG  +I  I 
Sbjct: 97  LDENKVK---DLSSLKDLKKLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITDIT 150

Query: 221 GSKVLIN 227
               L  
Sbjct: 151 VLSRLTK 157

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 23/133 (17%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI--FSSLGGLSS 155
                QLESL L  N I        +  LSRL  L  L L+    +N I     L GL+ 
Sbjct: 130 LVHLPQLESLYLGNNKI------TDITVLSRLTKLDTLSLE----DNQISDIVPLAGLTK 179

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215
           L++L L  N ++   D++ L  L NL+ L++      N  I      L   NT+      
Sbjct: 180 LQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQ-SNLVVPNTVKN---- 231

Query: 216 IAMIDGSKVLINS 228
               DGS V    
Sbjct: 232 ---TDGSLVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELD 185
                     +L      +    +   L+S+  +   ++ +     ++ +  L N+ +L 
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 74

Query: 186 MSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           ++ N + +  I K    L+ L  L L   ++  +   K L  
Sbjct: 75  LNGNKLTD--I-KPLANLKNLGWLFLDENKVKDLSSLKDLKK 113

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 143 NNSI--FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY 200
              I    S    +     +L    +    D    + L++++++  +++ I +    +  
Sbjct: 11  PTPIKQIFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS---VQGI 64

Query: 201 RGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           + L  +  L L G ++  I     L N
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKN 91

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 7e-12
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           A+   PF +LE L+L+ N +           L  L+ L+ L L+    NN +   L    
Sbjct: 51  AADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLN----NNYV-QELLVGP 99

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           S++ L   +N ++              + + +++N I   +   D     ++  L L   
Sbjct: 100 SIETLHAANNNISRV----SCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLN 154

Query: 215 EIAMID 220
           EI  ++
Sbjct: 155 EIDTVN 160

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 5e-11
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 13/130 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 L +LDL  N +           L    +++ LH   N  +     S       K
Sbjct: 76  LESLSTLRTLDLNNNYVQ---------ELLVGPSIETLHAANNNISRV---SCSRGQGKK 123

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
           ++ L +N++   +   +    S ++ LD+  N I+     +       L  L+L    I 
Sbjct: 124 NIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 218 MIDGSKVLIN 227
            + G  V   
Sbjct: 183 DVKGQVVFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 5e-11
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
            + +   +T +S+   + +          N+K L L  N  +    + L   + L+ L+L
Sbjct: 10  NRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221
             N L    +  +L+SLS L  LD+++N +    +         + TLH     I+ +  
Sbjct: 66  SSNVLY---ETLDLESLSTLRTLDLNNNYVQE--LL----VGPSIETLHAANNNISRVSC 116

Query: 222 S 222
           S
Sbjct: 117 S 117

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           ASL      ++ LDL+ N ++          L+    L+ L+L  N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           +L+ L L +N       ++EL    ++E L  ++N I+   +       +    ++L   
Sbjct: 81  TLRTLDLNNNY------VQELLVGPSIETLHAANNNISR--VSCSR--GQGKKNIYLANN 130

Query: 215 EIAMID 220
           +I M+ 
Sbjct: 131 KITMLR 136

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD 188
            N  K   +  +    ++ S      ++K L L  N L+  +   +L   + LE L++S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 189 NAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225
           N +       D   L  L TL L    +  +     +
Sbjct: 68  NVLYE---TLDLESLSTLRTLDLNNNYVQELLVGPSI 101

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           A L      LE L+L +N I        +        LK L L  N     +       +
Sbjct: 162 AELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAA 214

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
            +  +SL +N+L   ++ K L    NLE  D+  N  +   +   +   +++ T+  
Sbjct: 215 GVTWISLRNNKLV-LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 20/144 (13%), Positives = 33/144 (22%), Gaps = 23/144 (15%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNL-------------------KFLHLD 138
               Q LE  DL  N            +  R+  +                      H  
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 139 FNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIK---ELDSLSNLEELDMSDNAINNPV 195
                +        L +LK          GS   +   E ++ +   E+D         V
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT-V 351

Query: 196 IPKDYRGLRKLNTLHLGGTEIAMI 219
           I +     +   TL      +   
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQ 375

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
                  +++   + +N++     +     L ++  L  L    N        + G    
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASAS---LQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215
           L  L L +N++   +          +E L  S N +       + + +  + ++     +
Sbjct: 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 216 I 216
           I
Sbjct: 656 I 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 33/203 (16%), Positives = 62/203 (30%), Gaps = 27/203 (13%)

Query: 30  QERSALLQIKHFFNGD------------QHLQNWVDDENYSDCCQWERVECNETIGRVIK 77
           ++  AL  I    +G              H  NW  ++          V+ +   GRV  
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTG 327

Query: 78  LDLA--QIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFL 135
           L LA    +                  +L+ L    +S        G + L+   + +  
Sbjct: 328 LSLAGFGAKGRVPDA-------IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 136 HLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPV 195
           H     +       L     L    L  + +N + ++K +   S +   D     + N +
Sbjct: 381 HRIRMHYKKMF---LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 196 --IPKDYRGLRKLNTLHLGGTEI 216
             I K  + L KL  ++   +  
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPF 460

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 17/146 (11%), Positives = 40/146 (27%), Gaps = 23/146 (15%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGL---------------DRLSRLNNLKFLHLDFNWF 142
                +L+ +    +                             S L +L  + L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 143 NNSIFSSLGGLSSLKHLSLFHNRLNGSVDI--------KELDSLSNLEELDMSDNAINNP 194
              +   L  L  L+ L++  NR   +  +         + D+   ++   M  N +   
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 195 VIPKDYRGLRKLNTLHLGGTEIAMID 220
                 + + KL  L     ++  ++
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLE 589

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 26/122 (21%), Positives = 40/122 (32%), Gaps = 10/122 (8%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
            +L  LD   N +      + L+       L  L LD+N               ++ L  
Sbjct: 573 VKLGLLDCVHNKV------RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAI----NNPVIPKDYRGLRKLNTLHLGGTEIA 217
            HN+L    +I    S+  +  +D S N I     N     D       +T+ L   EI 
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 218 MI 219
             
Sbjct: 687 KF 688

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 18/132 (13%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN---------NSIFS 148
           ++  + L  ++L        +     D L  L  L+ L++  N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLP----DFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 149 SLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN-PVIPKDYRGLRKLN 207
                  ++   + +N L        L  +  L  LD   N + +            KL 
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFG----TNVKLT 598

Query: 208 TLHLGGTEIAMI 219
            L L   +I  I
Sbjct: 599 DLKLDYNQIEEI 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 11/127 (8%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDR-LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             + S+D ++N I     N        +  N   + L +N             S +  + 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 161 LFHNRL------NGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYR--GLRKLNTLHLG 212
           L +N +      +         +   L  +D+  N + +  +  D+R   L  L+ + + 
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVS 761

Query: 213 GTEIAMI 219
               +  
Sbjct: 762 YNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 13/118 (11%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWF-------NNSIFSSLGGL 153
                ++ L++N I            +  + +  + L  N               +    
Sbjct: 672 GINASTVTLSYNEIQKFPTEL----FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
             L  + L  N+L    D     +L  L  +D+S N  ++   P       +L    +
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGI 783

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 5e-10
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 15/136 (11%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN---WFNNSIFSSLG 151
                   Q+E L  + N +              +  +  +   +N       +I  S+ 
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFN---AKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 152 G--LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN------PVIPKDYRGL 203
                +   ++L +N +      +   + S +  + +S+N + +           +Y+  
Sbjct: 669 DYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 204 RKLNTLHLGGTEIAMI 219
             L T+ L   ++  +
Sbjct: 728 YLLTTIDLRFNKLTSL 743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 15/144 (10%)

Query: 77  KLDLA--QIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKF 134
            + L+   +              +     L ++DL +N +    ++     L     L  
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP---YLSN 757

Query: 135 LHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-----KELDSLSNLEELDMSDN 189
           + + +N F +S  +     S LK   + H R      I       + +  +L +L +  N
Sbjct: 758 MDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 190 AINNPVIPKDYRGLRKLNTLHLGG 213
            I    + +      +L  L +  
Sbjct: 817 DIRK--VDEK--LTPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 10/131 (7%)

Query: 98  FTPFQQLESLDLTWN---SIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
            T    L ++D+++N   S      N    +L           + N       + +    
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLN--SSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT 214
           SL  L +  N +     + E      L  LD++DN   +  +        +     L   
Sbjct: 807 SLIQLQIGSNDIRK---VDE-KLTPQLYILDIADNPNISIDVT-SVCPYIEAGMYVLLYD 861

Query: 215 EIAMIDGSKVL 225
           +   I G   L
Sbjct: 862 KTQDIRGCDAL 872

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 19/123 (15%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
                  +L   S+        L     L+ ++  + D +  N    + +   ++LK L 
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNS--NIQSLAGMQFFTNLKELH 69

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN--TLHLGGTEIAM 218
           L HN+++   D+  L  L+ LEEL ++ N +      K+  G+       L L   E+  
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRNRL------KNLNGIPSACLSRLFLDNNELRD 120

Query: 219 IDG 221
            D 
Sbjct: 121 TDS 123

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 31/135 (22%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-----------------WFN 143
           F  L+ L L+ N I        L  L  L  L+ L ++ N                   N
Sbjct: 62  FTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 144 NSI--FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYR 201
           N +    SL  L +L+ LS+ +N+L     I  L  LS LE LD+  N I N        
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEITN---TGGLT 169

Query: 202 GLRKLNTLHLGGTEI 216
            L+K+N + L G + 
Sbjct: 170 RLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
            L  L L  N +      +  D L  L NL+ L +  N   +     LG LS L+ L L 
Sbjct: 107 CLSRLFLDNNEL------RDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLH 158

Query: 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH 210
            N +    +   L  L  +  +D++     N  +      L   NT+ 
Sbjct: 159 GNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPE-LYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELD 185
              L N    +L     + +   S   LS +++ +  ++ +     +  +   +NL+EL 
Sbjct: 15  DPGLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELH 69

Query: 186 MSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225
           +S N I++       + L KL  L +    +  ++G    
Sbjct: 70  LSHNQISDL---SPLKDLTKLEELSVNRNRLKNLNGIPSA 106

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 143 NNSI--FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY 200
              I       GL++    +L    +    D+     LS ++  +  ++ I +       
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS---LAGM 59

Query: 201 RGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           +    L  LHL   +I+ +   K L  
Sbjct: 60  QFFTNLKELHLSHNQISDLSPLKDLTK 86

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 17/129 (13%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW---FNNSIFSSLGGLS 154
            T    L SL L+ N +   + ++    +    NL++L L  N     +  +FS    L 
Sbjct: 60  PTRLTNLHSLLLSHNHLNF-ISSEAFVPVP---NLRYLDLSSNHLHTLDEFLFS---DLQ 112

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD----YRGLRKLNTLH 210
           +L+ L L++N +   VD    + ++ L++L +S N I+    P +       L KL  L 
Sbjct: 113 ALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLD 169

Query: 211 LGGTEIAMI 219
           L   ++  +
Sbjct: 170 LSSNKLKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 9e-10
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 15/121 (12%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SLGGLSSLKHL 159
              LDL+ N+++         RL+   NL  L L     +N +      +   + +L++L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLT---NLHSLLLS----HNHLNFISSEAFVPVPNLRYL 93

Query: 160 SLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGGTEIAM 218
            L  N L+ ++D      L  LE L + +N I    + ++ +  + +L  L+L   +I+ 
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKLYLSQNQISR 150

Query: 219 I 219
            
Sbjct: 151 F 151

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 131 NLKFLHLDFNWFNN-SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
               L L  N  +      +   L++L  L L HN LN  +  +    + NL  LD+S N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 190 AINNPVIPKDY-RGLRKLNTLHLGGTEIAMID 220
            ++   + +     L+ L  L L    I ++D
Sbjct: 99  HLH--TLDEFLFSDLQALEVLLLYNNHIVVVD 128

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN---WFNNSIFSSLG 151
             LF+  Q LE L L  N I   V+    + ++    L+ L+L  N    F   +     
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMA---QLQKLYLSQNQISRFPVELIKDGN 160

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNL--EELDMSDNAIN 192
            L  L  L L  N+L   + + +L  L       L + +N + 
Sbjct: 161 KLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 8e-10
 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 93  MNASLFTPFQQLESLDLTWNSIAG---CVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS 149
            +      F  L +LDL+ N   G    +      +   L  L   +      +    + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209
                 L+ L L HN L  +      D  S L  L++S   +    +PK      KL+ L
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGL--PAKLSVL 279

Query: 210 HL 211
            L
Sbjct: 280 DL 281

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
           +L     QL+ LDL+ NS+         D  S    L  L+L F      +   L   + 
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS---QLNSLNLSFTGLK-QVPKGL--PAK 275

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNP 194
           L  L L +NRL+        D L  +  L +  N   + 
Sbjct: 276 LSVLDLSYNRLDR---NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 7/134 (5%)

Query: 96  SLFTPFQQLESLDLTWNSIAGC-VENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS----L 150
           +     QQ     L   SIA     N   +++     L  L L  N              
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKE--LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNT 208
               +L+ L+L +  +     +      +   L+ LD+S N++ +           +LN+
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 209 LHLGGTEIAMIDGS 222
           L+L  T +  +   
Sbjct: 258 LNLSFTGLKQVPKG 271

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 21/120 (17%), Positives = 33/120 (27%), Gaps = 5/120 (4%)

Query: 97  LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL 156
           L      L  L+L   S A         +      LK L +      N     +    +L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 157 KHLSLFHNRLNGSVDIKE---LDSLSNLEELDMSDNAIN--NPVIPKDYRGLRKLNTLHL 211
             L L  N   G   +           L+ L + +  +   + V         +L  L L
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
            LE L    ++ A   +   + +   L  L                 + G+S L+ L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 163 HNRLNGSVDIKELD-SLSNLEELDMSDNAINNP 194
           +  + G+     L+ +  +L  L++ + +    
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 8e-10
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 97  LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL 156
           L   F  LE L L    +        +  L +L  LK L L  N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYR 201
            HL+L  N+L     ++ L  L  L+ LD+ +  + N     DYR
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN---LNDYR 139

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSLGGLSSLKHL 159
              +  L L         + K     +   NL+FL L           S+L  L  LK L
Sbjct: 23  PAAVRELVLDNC---KSNDGKIEGLTAEFVNLEFLSL---INVGLISVSNLPKLPKLKKL 76

Query: 160 SLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219
            L  NR+         + L NL  L++S N + +    +  + L  L +L L   E+  +
Sbjct: 77  ELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 220 DG 221
           + 
Sbjct: 136 ND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 128 RLNNLKFLHLDFNWFNN-SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDM 186
               ++ L LD    N+  I        +L+ LSL +  L   + +  L  L  L++L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKLEL 78

Query: 187 SDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL 225
           S+N I    +      L  L  L+L G ++  I   + L
Sbjct: 79  SENRIFG-GLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 9e-10
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 13/127 (10%)

Query: 95  ASLFTPFQQLESLDLTWNSI----AGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL 150
           + ++  F  +   + T +        C         S+++    L    N   +++F + 
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLC--------PSKISPFLHLDFSNNLLTDTVFENC 344

Query: 151 GGLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209
           G L+ L+ L L  N+L   S   +    + +L++LD+S N+++      D    + L +L
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 210 HLGGTEI 216
           ++    +
Sbjct: 405 NMSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 6e-09
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 12/119 (10%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFH 163
              L+++ N I+  +    +  LS    L+ L +  N       S       L++L L H
Sbjct: 23  TTILNISQNYISE-LWTSDILSLS---KLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 164 NRLNGSVDIKEL--DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID 220
           N+L       ++      NL+ LD+S NA +   I K++  + +L  L L  T +    
Sbjct: 79  NKL------VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           A + T  + L+ LD++ NS++   +           +L  L++  N   ++IF  L    
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK---SLLSLNMSSNILTDTIFRCL--PP 421

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
            +K L L  N++  S+  K++  L  L+EL+++ N + +  +P   +  L  L  + L  
Sbjct: 422 RIKVLDLHSNKIK-SIP-KQVVKLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 13/115 (11%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGGLSSL 156
                +L  L ++ N I   ++            L++L L     +N +   S     +L
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQ---ELEYLDLS----HNKLVKISCHPTVNL 92

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           KHL L  N  +     KE  ++S L+ L +S   +           +  LN   +
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKV 143

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN--SIFSSLGGLSS 155
            +       LD + N +      +    L+    L+ L L  N       I      + S
Sbjct: 320 PSKISPFLHLDFSNNLLTD-TVFENCGHLT---ELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           L+ L +  N ++      +     +L  L+MS N + + +         ++  L L
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC---LPPRIKVLDL 428

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA 190
               L++  N+ +    S +  LS L+ L + HNR+   +DI        LE LD+S N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 191 INNPVIPKDYRGLRKLNTLHLGG 213
           +    I         L  L L  
Sbjct: 81  LVK--ISCH--PTVNLKHLDLSF 99

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 6/100 (6%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
             P   L+ LDL++N+       K    +S    LKFL L       S       ++ L 
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSVLP---IAHLN 139

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP 197
              +         + ++ + L +     +      N    
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 11/125 (8%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS-----IFSS 149
                  Q +  L L        +    +D  S +  L+    D + F+ S       +S
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNT 208
           L    + +++ +    L     +K L+ +S L EL+ S N + +  +P   +  L  L  
Sbjct: 250 LIKKFTFRNVKITDESL--FQVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQK 305

Query: 209 LHLGG 213
           + L  
Sbjct: 306 IWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW---FNNSIFSSLG 151
            S       L++L LT N I   +E      L    +L+ L L +N+    ++S F    
Sbjct: 69  NSDLQRCVNLQALVLTSNGINT-IEEDSFSSLG---SLEHLDLSYNYLSNLSSSWFK--- 121

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
            LSSL  L+L  N      +      L+ L+ L + +      +  KD+ GL  L  L +
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 212 GGTEIAMI 219
             +++   
Sbjct: 182 DASDLQSY 189

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGC----VENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL 150
                    +E L+L    +       +     + L +    + + +        +   L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
             +S L  L    N+L  SV     D L++L+++ +  N
Sbjct: 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 97  LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL 156
           L     Q +++D + N I      + LD    L  LK L ++ N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYR 201
             L L +N L    D+  L SL +L  L +  N + N    K YR
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN---KKHYR 132

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 74  RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLK 133
           + + LD ++  + +         L   F++LE L      +        +  L +LN LK
Sbjct: 20  KELVLDNSRSNEGKLEG------LTDEFEELEFLSTINVGL------TSIANLPKLNKLK 67

Query: 134 FLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN 193
            L L  N  +  +        +L HL+L  N++     I+ L  L NL+ LD+ +  + N
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127

Query: 194 PVIPKDYR 201
                DYR
Sbjct: 128 ---LNDYR 132

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 12/124 (9%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS---LK 157
              ++ L L  +      E K          L+FL       N  + +S+  L     LK
Sbjct: 16  PSDVKELVLDNS---RSNEGKLEGLTDEFEELEFLSTI----NVGL-TSIANLPKLNKLK 67

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            L L  NR++        +   NL  L++S N I +    +  + L  L +L L   E+ 
Sbjct: 68  KLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 218 MIDG 221
            ++ 
Sbjct: 127 NLND 130

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 11/126 (8%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
            +   P+ +L  L+L    +        L     L  L  L L  N    S+      L 
Sbjct: 48  LATLMPYTRLTQLNLDRAEL------TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLP 100

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
           +L  L +  NRL  S+ +  L  L  L+EL +  N +    +P        KL  L L  
Sbjct: 101 ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT--LPPGLLTPTPKLEKLSLAN 157

Query: 214 TEIAMI 219
             +  +
Sbjct: 158 NNLTEL 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN---SIFSSLGG 152
            L      L  LD+++N +   +    L  L     L+ L+L  N        + +    
Sbjct: 94  LLGQTLPALTVLDVSFNRLTS-LPLGALRGLG---ELQELYLKGNELKTLPPGLLT---P 146

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLG 212
              L+ LSL +N L   +    L+ L NL+ L + +N++    IPK + G   L    L 
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLH 203

Query: 213 G 213
           G
Sbjct: 204 G 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA 190
           +   LHL  N       ++L   + L  L+L    L     ++   +L  L  LD+S N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHNQ 88

Query: 191 INNPVIPKDYRGLRKLNTLHLGGTEIAMI 219
           + +  +P   + L  L  L +    +  +
Sbjct: 89  LQS--LPLLGQTLPALTVLDVSFNRLTSL 115

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 15/121 (12%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
            L      LE +    N +      + L  L  L  L  ++ D    NNS+        S
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYAD----NNSLKKLPDLPLS 216

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215
           L+ +   +N L    ++ EL +L  L  +   +N +    +P     L  LN      T+
Sbjct: 217 LESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKT--LPDLPPSLEALNVRDNYLTD 271

Query: 216 I 216
           +
Sbjct: 272 L 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
             LE L ++ N +      + L  L   + LK + +D    NNS+        SL+ ++ 
Sbjct: 131 PLLEYLGVSNNQL------EKLPELQNSSFLKIIDVD----NNSLKKLPDLPPSLEFIAA 180

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221
            +N+L    ++ EL +L  L  +   +N++    +P        L ++  G   +  +  
Sbjct: 181 GNNQLE---ELPELQNLPFLTAIYADNNSLKK--LPD---LPLSLESIVAGNNILEELPE 232

Query: 222 SKVLIN 227
            + L  
Sbjct: 233 LQNLPF 238

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS 155
            L      LES+    N +      + L  L  L  L  ++ D    NN + +      S
Sbjct: 209 KLPDLPLSLESIVAGNNIL------EELPELQNLPFLTTIYAD----NNLLKTLPDLPPS 258

Query: 156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE 215
           L+ L++  N L    D+ EL    +L  LD+S+N  +   + +    L  LN        
Sbjct: 259 LEALNVRDNYLT---DLPEL--PQSLTFLDVSENIFSG--LSELPPNLYYLNASSNEIRS 311

Query: 216 I 216
           +
Sbjct: 312 L 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 20/115 (17%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSL 161
             LESL  + NS+        L  L    +LK L +D N       S L     L++L +
Sbjct: 91  PHLESLVASCNSL------TELPEL--PQSLKSLLVDNNNLKA--LSDL--PPLLEYLGV 138

Query: 162 FHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
            +N+L     + EL + S L+ +D+ +N++    +P        L  +  G  ++
Sbjct: 139 SNNQLE---KLPELQNSSFLKIIDVDNNSLKK--LPD---LPPSLEFIAAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 21/108 (19%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
            Q L  LD++ N  +G  E           NL +L+      +N I S      SL+ L+
Sbjct: 276 PQSLTFLDVSENIFSGLSE--------LPPNLYYLNAS----SNEIRSLCDLPPSLEELN 323

Query: 161 LFHNRLNGSVDIKEL-DSLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207
           + +N+L       EL      LE L  S N +    +P+  + L++L+
Sbjct: 324 VSNNKL------IELPALPPRLERLIASFNHLAE--VPELPQNLKQLH 363

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 11/99 (11%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSV-------DIKEL-DS 177
              + +    +  ++ +  +     G    +    L       +         +  L + 
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89

Query: 178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
             +LE L  S N++    +P+  + L+ L   +     +
Sbjct: 90  PPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLKAL 126

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW---FNNSIFSSLG 151
           +  F  F +L+ LDL+   I   +E+     LS   +L  L L  N         FS   
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS---HLSTLILTGNPIQSLALGAFS--- 97

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL 211
           GLSSL+ L      L  S++   +  L  L+EL+++ N I +  +P+ +  L  L  L L
Sbjct: 98  GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 212 GGTEIAMI 219
              +I  I
Sbjct: 157 SSNKIQSI 164

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKF-LHLDFN---WFNNSIFSSL 150
              F+    LE LDL+ N I   +    L  L ++  L   L L  N   +     F  +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
                LK L+L  N+L  SV     D L++L+++ +  N
Sbjct: 201 ----RLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 14/120 (11%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW---FNNSIFSSLGGLS 154
           F+P+++L  +DL+ N I+  +       L    +L  L L  N       S+F    GL 
Sbjct: 52  FSPYKKLRRIDLSNNQISE-LAPDAFQGLR---SLNSLVLYGNKITELPKSLFE---GLF 104

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
           SL+ L L  N++N  + +     L NL  L + DN +    I K  +  LR + T+HL  
Sbjct: 105 SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 18/113 (15%)

Query: 105 ESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-----GGLSSLKHL 159
             + L  N+I   +             L+ + L     NN I S L      GL SL  L
Sbjct: 35  TEIRLEQNTIKV-IPPGAFSPYK---KLRRIDLS----NNQI-SELAPDAFQGLRSLNSL 85

Query: 160 SLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHL 211
            L+ N++   +     + L +L+ L ++ N IN   +  D ++ L  LN L L
Sbjct: 86  VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHNLNLLSL 135

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFN---NSIFSS 149
              F   + L SL L  N I        L +     L +L+ L L+ N  N      F  
Sbjct: 73  PDAFQGLRSLNSLVLYGNKI------TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ- 125

Query: 150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
              L +L  LSL+ N+L  ++       L  ++ + ++ N
Sbjct: 126 --DLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 14/122 (11%)

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW---FNNSIFSSLGG 152
            +F    QL  ++ + N I   +E    +  S    +  + L  N      + +F    G
Sbjct: 51  GIFKKLPQLRKINFSNNKITD-IEEGAFEGAS---GVNEILLTSNRLENVQHKMFK---G 103

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHL 211
           L SLK L L  NR+   V       LS++  L + DN I    +    +  L  L+TL+L
Sbjct: 104 LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTLNL 160

Query: 212 GG 213
             
Sbjct: 161 LA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 105 ESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SLGGLSSLKHLS 160
             L L  N               +L  L+ ++      NN I      +  G S +  + 
Sbjct: 35  AELRLNNNEFTVLEAT---GIFKKLPQLRKINFS----NNKITDIEEGAFEGASGVNEIL 87

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHL 211
           L  NRL  +V  K    L +L+ L +  N I    +  D + GL  +  L L
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSNRITC--VGNDSFIGLSSVRLLSL 136

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SLGGL 153
           F     +  + LT N +   V++K    L    +LK L L     +N I      S  GL
Sbjct: 77  FEGASGVNEILLTSNRLEN-VQHKMFKGLE---SLKTLMLR----SNRITCVGNDSFIGL 128

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAIN 192
           SS++ LSL+ N++  +V     D+L +L  L++  N  N
Sbjct: 129 SSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 131 NLKFLHLDFNWFNN-SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
               L L+ N F           L  L+ ++  +N++   ++    +  S + E+ ++ N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 190 AINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219
            + N V  K ++GL  L TL L    I  +
Sbjct: 92  RLEN-VQHKMFKGLESLKTLMLRSNRITCV 120

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 20/123 (16%)

Query: 104 LESLDLTWNSIAGCVENKGL-DRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
             +L+L    +          D+  RL++L+ + +D       +  ++   + L+ L+L 
Sbjct: 83  RVALELRSVPL------PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA 135

Query: 163 HNRLNGSVDI-KELDSLSNLEELDMSDN--------AINNPVIPKDYRGLRKLNTLHLGG 213
            N L     +   + SL+ L EL +            + +     +++GL  L +L L  
Sbjct: 136 RNPL---RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 214 TEI 216
           T I
Sbjct: 193 TGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 102 QQLESLDLTWNSIAGCVENKGL-DRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
             L+ + +    +        L D + +   L+ L L  N    ++ +S+  L+ L+ LS
Sbjct: 104 SHLQHMTIDAAGL------MELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELS 156

Query: 161 LFHNR--------LNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLG 212
           +            L  +    E   L NL+ L +    I +  +P     L+ L +L + 
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIR 214

Query: 213 GTEIAMI 219
            + ++ +
Sbjct: 215 NSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 11/118 (9%)

Query: 102 QQLESLDLTWNSIAGCV-----ENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL 156
            +L  L +        +               L NL+ L L++     S+ +S+  L +L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSD-NAINNPVIPKDYRGLRKLNTLHLGG 213
           K L + ++ L+       +  L  LEELD+    A+ N   P  + G   L  L L  
Sbjct: 209 KSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKD 262

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 22/124 (17%)

Query: 101 FQQLESLDLTWNSIAGCVENKGL-DRLSRLNNLKFLHLDFNW---------FNNSIFSSL 150
           F  LE+L L  N +      + L   ++ LN L+ L +              +       
Sbjct: 126 FAGLETLTLARNPL------RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 151 GGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL 209
            GL +L+ L L    +     +   + +L NL+ L + ++ ++   +      L KL  L
Sbjct: 180 QGLVNLQSLRLEWTGI---RSLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEEL 234

Query: 210 HLGG 213
            L G
Sbjct: 235 DLRG 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 11/121 (9%)

Query: 102 QQLESLDLTWNSIAGCVENKGL-DRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
           Q L+SL +  + +        L   +  L  L+ L L       +     GG + LK L 
Sbjct: 206 QNLKSLKIRNSPL------SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 161 LFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI 219
           L     +  + +  ++  L+ LE+LD+     N   +P     L     + +     A +
Sbjct: 260 LKDC--SNLLTLPLDIHRLTQLEKLDLRGCV-NLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 220 D 220
           D
Sbjct: 317 D 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 13/114 (11%), Positives = 30/114 (26%), Gaps = 12/114 (10%)

Query: 104 LESLDLTWNSIAGCVENKGL-DRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF 162
            E+L        G    +   D LS+         +               ++ +  +  
Sbjct: 14  RENLYF-----QGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRT 64

Query: 163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
              L  + D+ E  +      L++    +     P     L  L  + +    +
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGL 116

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 18/122 (14%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN---WFNNSIFSSLGGLSSLKHLS 160
            ++L L+ NSI+  +    +  LS    L+ L L  N     +  +F        L++L 
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLS---ELRVLRLSHNRIRSLDFHVFLFNQ---DLEYLD 106

Query: 161 LFHNRLNGSVDIKEL--DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM 218
           + HNRL      + +    +++L  LD+S N  +   + K++  L KL  L L   +   
Sbjct: 107 VSHNRL------QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160

Query: 219 ID 220
           +D
Sbjct: 161 LD 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 10/120 (8%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
           A +      LE+LD++ NS+     +      +   ++  L+L  N    S+F  L    
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYD---RTCAWAESILVLNLSSNMLTGSVFRCL--PP 450

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGG 213
            +K L L +NR+  S+  K++  L  L+EL+++ N + +  +P   +  L  L  + L  
Sbjct: 451 KVKVLDLHNNRIM-SIP-KDVTHLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDR--LSRLNNLKFLHLDFNWFNNSIFS-SLGGLS 154
            +   +L  L L+ N I      + LD        +L++L +     +N + + S   ++
Sbjct: 72  ISFLSELRVLRLSHNRI------RSLDFHVFLFNQDLEYLDVS----HNRLQNISCCPMA 121

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI 191
           SL+HL L  N  +     KE  +L+ L  L +S    
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 13/126 (10%)

Query: 96  SLFTPFQQLESLDLTWNSI----AGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG 151
           +L++ F ++    L+ +        C            ++  FL+   N F +S+F    
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVC--------PPSPSSFTFLNFTQNVFTDSVFQGCS 374

Query: 152 GLSSLKHLSLFHNRL-NGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH 210
            L  L+ L L  N L N         ++S+LE LD+S N++N+    +       +  L+
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 211 LGGTEI 216
           L    +
Sbjct: 435 LSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 97  LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL 156
                + +  L+L+ N + G V       L     +K L L  N    SI   +  L +L
Sbjct: 423 TCAWAESILVLNLSSNMLTGSV----FRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQAL 475

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
           + L++  N+L  SV     D L++L+ + + DN
Sbjct: 476 QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRL---SRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
                 L+  ++  N          L  L     L N+   H++  W  +          
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSN-LEELDMSDNAINNPVIPKD--YRGLRKLNTLHL 211
            +++L++++  +   +D +E       L+ L +        +  K+  Y    ++N   L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 212 GGTEIAMI 219
             ++   I
Sbjct: 337 SISDTPFI 344

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 13/129 (10%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-----GG 152
           F+    +  + ++ +     +E+     LS    +  + +     N    + +       
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESHSFYNLS---KVTHIEI----RNTRNLTYIDPDALKE 103

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRK-LNTLHL 211
           L  LK L +F+  L    D+ ++ S      L+++DN     +    ++GL     TL L
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 212 GGTEIAMID 220
                  + 
Sbjct: 164 YNNGFTSVQ 172

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGGLSSL 156
                 L SLD   +SI        +  + +L  L  L       +N+I +  L   ++L
Sbjct: 38  EEQLATLTSLDCHNSSI------TDMTGIEKLTGLTKLICT----SNNITTLDLSQNTNL 87

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
            +L+   N+L  ++D+     L+ L  L+   N +       D      L  L+     +
Sbjct: 88  TYLACDSNKLT-NLDV---TPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTL 139

Query: 217 AMIDGSK 223
             ID S 
Sbjct: 140 TEIDVSH 146

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 20/127 (15%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGGLSSL 156
            TP  QL +LD ++N I        LD +S+   L  L+ D     N+I    L     L
Sbjct: 166 VTPQTQLTTLDCSFNKI------TELD-VSQNKLLNRLNCD----TNNITKLDLNQNIQL 214

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI 216
             L    N+L   +D+     L+ L   D S N +       D   L KL TLH   T++
Sbjct: 215 TFLDCSSNKLT-EIDV---TPLTQLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDL 266

Query: 217 AMIDGSK 223
             ID + 
Sbjct: 267 LEIDLTH 273

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 32/144 (22%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
                 L  L  T N+I        LD LS+  NL +L  D N   N     +  L+ L 
Sbjct: 60  IEKLTGLTKLICTSNNI------TTLD-LSQNTNLTYLACDSNKLTN---LDVTPLTKLT 109

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI------------------NNPVIPKD 199
           +L+   N+L   +D+        L  L+ + N +                  N  +   D
Sbjct: 110 YLNCDTNKLT-KLDVS---QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD 165

Query: 200 YRGLRKLNTLHLGGTEIAMIDGSK 223
                +L TL     +I  +D S+
Sbjct: 166 VTPQTQLTTLDCSFNKITELDVSQ 189

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 17/126 (13%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLK 157
            +    L  L+   N++        +D +S    L  L    N         +   + L 
Sbjct: 123 VSQNPLLTYLNCARNTL------TEID-VSHNTQLTELDCHLN--KKITKLDVTPQTQLT 173

Query: 158 HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
            L    N++       ++     L  L+   N I       D     +L  L     ++ 
Sbjct: 174 TLDCSFNKITEL----DVSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLT 225

Query: 218 MIDGSK 223
            ID + 
Sbjct: 226 EIDVTP 231

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 22/143 (15%)

Query: 98  FTPFQQLESLDLTWNSIAG-------------CVENKGLDRLSRLNNLKFLHLDFNWFNN 144
            TP  QL   D + N +               C++   L  +   +N + ++        
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYFQAEGCRK 287

Query: 145 SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLR 204
                +   + L  L      +   +D+        L  L +++  +    +  D     
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT-ELDLS---QNPKLVYLYLNNTELTE--L--DVSHNT 339

Query: 205 KLNTLHLGGTEIAMIDGSKVLIN 227
           KL +L      I        +  
Sbjct: 340 KLKSLSCVNAHIQDFSSVGKIPA 362

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 130 NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
           +N             +   S   L++L  L   ++ +    D+  ++ L+ L +L  + N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN 74

Query: 190 AINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK 223
            I       D      L  L     ++  +D + 
Sbjct: 75  NITTL----DLSQNTNLTYLACDSNKLTNLDVTP 104

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 15/95 (15%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-SLGGLSSL 156
            T   QL  LD     I        LD LS+   L +L+L+    N  +    +   + L
Sbjct: 293 VTHNTQLYLLDCQAAGI------TELD-LSQNPKLVYLYLN----NTELTELDVSHNTKL 341

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI 191
           K LS  +  +    D   +  +  L     ++   
Sbjct: 342 KSLSCVNAHIQ---DFSSVGKIPALNNNFEAEGQT 373

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SLGGL 153
           F+ F  LE ++++ N +   +E      L +L+ ++          N++      +   L
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK------ANNLLYINPEAFQNL 103

Query: 154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLR-KLNTLHLG 212
            +L++L + +  +   +             LD+ DN   + +    + GL  +   L L 
Sbjct: 104 PNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 213 GTEIAMI 219
              I  I
Sbjct: 163 KNGIQEI 169

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 6/118 (5%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS 154
                   Q   LD+  N     +E      LS       L L+ N       S+  G  
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAFNGTQ 178

Query: 155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHL 211
             +     +N L   +        S    LD+S   I++  +P      L+KL     
Sbjct: 179 LDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS--LPSYGLENLKKLRARST 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD-N 189
           N   L             +  G   L+ + +  N +   ++     +L  L E+ +   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 190 AINNPVIPKDY-RGLRKLNTLHLGGTEIAMI 219
            +    I  +  + L  L  L +  T I  +
Sbjct: 91  NLLY--INPEAFQNLPNLQYLLISNTGIKHL 119

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 18/132 (13%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLS--RLNNLKFLHLDFNWFNNSI----FS 148
              F     L+ L ++   I      K L  +          L +  N   ++I    F 
Sbjct: 97  PEAFQNLPNLQYLLISNTGI------KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 149 SLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLN 207
            L        L L  N +   +     +     E     +N +    +P D + G     
Sbjct: 151 GLSFE--SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPV 205

Query: 208 TLHLGGTEIAMI 219
            L +  T I  +
Sbjct: 206 ILDISRTRIHSL 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN---NSIFSSLG 151
           +  F    +L  L L  N +   +       L    NL+ L +  N        +F    
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELK---NLETLWVTDNKLQALPIGVFD--- 106

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLH 210
            L +L  L L  N+L  S+  +  DSL+ L  L +  N + +  +PK  +  L  L  L 
Sbjct: 107 QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELR 163

Query: 211 L 211
           L
Sbjct: 164 L 164

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN---NSIFSSLG 151
           A +F   + LE+L +T N +   +     D+L    NL  L LD N        +F    
Sbjct: 78  AGIFKELKNLETLWVTDNKLQA-LPIGVFDQLV---NLAELRLDRNQLKSLPPRVFD--- 130

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLH 210
            L+ L +LSL +N L  S+     D L++L+EL + +N +    +P+  +  L +L TL 
Sbjct: 131 SLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK--RVPEGAFDKLTELKTLK 187

Query: 211 LGGTEIAMI 219
           L   ++  +
Sbjct: 188 LDNNQLKRV 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 14/120 (11%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN---SIFSSLGGLSSLKHLS 160
            + LDL  N ++  + +K   RL+    L+ L+L+ N        IF     L +L+ L 
Sbjct: 39  TKKLDLQSNKLSS-LPSKAFHRLT---KLRLLYLNDNKLQTLPAGIFK---ELKNLETLW 91

Query: 161 LFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLHLGGTEIAMI 219
           +  N+L  ++ I   D L NL EL +  N + +  +P   +  L KL  L LG  E+  +
Sbjct: 92  VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS--LPPRVFDSLTKLTYLSLGYNELQSL 148

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 14/121 (11%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN---SIFSSLG 151
             +F     L  L L  N +   +  +  D L+    L +L L +N   +    +F    
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLT---KLTYLSLGYNELQSLPKGVFD--- 154

Query: 152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGLRKLNTLH 210
            L+SLK L L++N+L   V     D L+ L+ L + +N +    +P+  +  L KL  L 
Sbjct: 155 KLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR--VPEGAFDSLEKLKMLQ 211

Query: 211 L 211
           L
Sbjct: 212 L 212

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 31/126 (24%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW------------------- 141
            +  + L L+ N+I   + +     LS + NL+ L L  N                    
Sbjct: 47  LKACKHLALSTNNIE-KISS-----LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100

Query: 142 FNNSI--FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAI----NNPV 195
             N I   S +  L +L+ L + +N++    +I +L +L  LE+L ++ N +        
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160

Query: 196 IPKDYR 201
              +YR
Sbjct: 161 ATSEYR 166

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 118 VENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS 177
            E +     +    ++ LH         + ++L  L + KHL+L  N +     I  L  
Sbjct: 14  FEERKSVVATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNI---EKISSLSG 68

Query: 178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVLIN 227
           + NL  L +  N I    I         L  L +   +IA + G + L+N
Sbjct: 69  MENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSGIEKLVN 116

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 22/130 (16%)

Query: 97  LFTPFQQLESLDLTWNSIAGCVEN-KGLD----RLSRL----NNLKFLHLDFNWFNNSIF 147
           L     +L         +         L     +L+ L      L+ L +     +N + 
Sbjct: 99  LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVS----DNQLA 154

Query: 148 SSLGGLSSLKHLSLFHNRLNGSVDIKEL-DSLSNLEELDMSDNAINNPVIPKDYRGLRKL 206
           S     S L  L  ++N+L        L    S L+EL +SDN + +  +P     L KL
Sbjct: 155 SLPALPSELCKLWAYNNQLT------SLPMLPSGLQELSVSDNQLAS--LPTLPSELYKL 206

Query: 207 NTLHLGGTEI 216
              +   T +
Sbjct: 207 WAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 25/123 (20%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRL-SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHL 159
              + +L +  N+         L  L +    L+ L +  N    S+     GL  L   
Sbjct: 60  PAHITTLVIPDNN---------LTSLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIF 109

Query: 160 SLFHNRLNGSVD-IKELD-----------SLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207
           S     L      + +L                L+EL +SDN + +  +P     L KL 
Sbjct: 110 SNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS--LPALPSELCKLW 167

Query: 208 TLH 210
             +
Sbjct: 168 AYN 170

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 25/120 (20%)

Query: 101 FQQLESLDLTWNSIAGC-VENKGLDRLSRLNN-----------LKFLHLDFNWFNNSIFS 148
              L+ L ++ N +A        L +L   NN           L+ L +  N    S+ +
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPT 198

Query: 149 SLGGLSSLKHLSLFHNRLNGSVDIKEL-DSLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207
                  L  L  ++NRL        L    S L+EL +S N + +  +P     L++L 
Sbjct: 199 LPS---ELYKLWAYNNRLT------SLPALPSGLKELIVSGNRLTS--LPVLPSELKELM 247

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 123 LDRLSRLNNLKFLHLDFNWFNNSIFS----SLGGLSSLKHLSLFHNRLNGSVDIKELDSL 178
           L  L    NL  L+++       +       L GL  L++L++  + L   V        
Sbjct: 24  LHHLPGAENLTELYIE---NQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFT 79

Query: 179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG 213
             L  L++S NA+    +         L  L L G
Sbjct: 80  PRLSRLNLSFNALE--SLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 145 SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKD-YRGL 203
                L G  +L  L + + +    +++++L  L  L  L +  + +    +  D +   
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFT 79

Query: 204 RKLNTLHLGGTEIAMI 219
            +L+ L+L    +  +
Sbjct: 80  PRLSRLNLSFNALESL 95

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 23/144 (15%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRL-----NNLKFLHLDFNWFNNS----IFSSLGG 152
             + SLDL+ N +      K    L+ +     N++  L+L  N  +      +      
Sbjct: 196 ASVTSLDLSANLL----GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 153 LSSLKHLSLFHNRLN-----GSVDIKE-LDSLSNLEELDMSDNAINNPVIPKDYRGLR-- 204
           L  L+ + L ++ +          +     ++  +  +D +   I+          +R  
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311

Query: 205 --KLNTLHLGGTEIAMIDGSKVLI 226
             K +   L    +      +  I
Sbjct: 312 SGKADVPSLLNQCLIFAQKHQTNI 335

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 18/137 (13%)

Query: 95  ASLFTPFQQLESLDLTWNSI--AGCVENKGLDR-LSRLNNLKFLHLDFNWFNNSIFSSLG 151
           A L    QQ + + L    +  A C   K +   L     L  L+L  N   +     + 
Sbjct: 21  AELLPLLQQCQVVRLDDCGLTEARC---KDISSALRVNPALAELNLRSNELGDVGVHCVL 77

Query: 152 -GLSS----LKHLSLFHNRLN--GSVDIKE-LDSLSNLEELDMSDNAINNPVIPKDYRGL 203
            GL +    ++ LSL +  L   G   +   L +L  L+EL +SDN + +  +     GL
Sbjct: 78  QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137

Query: 204 R----KLNTLHLGGTEI 216
                +L  L L    +
Sbjct: 138 LDPQCRLEKLQLEYCSL 154

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 19/111 (17%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRL-----NNLKFLHLDFNWFNN----S 145
           +S       L+ L L+ N +     + GL  L          L+ L L++   +      
Sbjct: 106 SSTLRTLPTLQELHLSDNLL----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 146 IFSSLGGLSSLKHLSLFHNRLNGSVDIKEL-----DSLSNLEELDMSDNAI 191
           + S L      K L++ +N +     ++ L     DS   LE L +    +
Sbjct: 162 LASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLESCGV 211

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 18/137 (13%)

Query: 95  ASLFTPFQQLESLDLTWNSI--AGCVENKGLDR-LSRLNNLKFLHLDFNWFNNSIFSSLG 151
             L  P  +LE L L + S+  A C   + L   L    + K L +  N  N +    L 
Sbjct: 135 EGLLDPQCRLEKLQLEYCSLSAASC---EPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191

Query: 152 GL-----SSLKHLSLFHNRLN--GSVDIKE-LDSLSNLEELDMSDNAINNPVIPKDYRGL 203
                    L+ L L    +      D+   + S ++L EL +  N + +  + +   GL
Sbjct: 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251

Query: 204 RKLN----TLHLGGTEI 216
              +    TL +    I
Sbjct: 252 LHPSSRLRTLWIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 18/137 (13%)

Query: 95  ASLFTPFQQLESLDLTWNSI--AGCVENKGLDR-LSRLNNLKFLHLDFNWFNNSIFSSLG 151
            +L  P  QLESL +   S   A C         L++   L  L +  N   ++    L 
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACC---SHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 152 -----GLSSLKHLSLFHNRL--NGSVDIKE-LDSLSNLEELDMSDNAINNPVIPKDYRGL 203
                  S L+ L L    +  +    +   L +  +L ELD+S+N + +  I +    +
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422

Query: 204 R----KLNTLHLGGTEI 216
           R     L  L L     
Sbjct: 423 RQPGCLLEQLVLYDIYW 439

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 95  ASLFTPFQQLESLDLTWNSI--AGCVENKGLDRLSRLNNLKFLHLDFNWFNN----SIFS 148
           A  F   + L ++ +  N I   G       + L+    LK L L  N F +    ++  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 149 SLGGLSSLKHLSLFHNRL--NGSVDI-KELDSLSN--LEELDMSDNAINN 193
           +L    +L+ L L    L   G+  +      L N  L+ L +  N I  
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 16/102 (15%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRL----NNLKFLHLDFNWFNNS-----IFSSLGG 152
             L S+    N +    EN  +   ++       L  + +  N          +   L  
Sbjct: 159 PPLRSIICGRNRL----ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 153 LSSLKHLSLFHNRL--NGSVDIKE-LDSLSNLEELDMSDNAI 191
              LK L L  N     GS  +   L S  NL EL ++D  +
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 18/143 (12%), Positives = 44/143 (30%), Gaps = 31/143 (21%)

Query: 102 QQLESLDLTWNSI--AGCVENKGL-DRLSRLNNLKFLHLDFNWFNN----------SIFS 148
             ++ + L+ N+I        + L + ++   +L+       +              +  
Sbjct: 32  DSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 149 SLGGLSSLKHLSLFHNRL--NGSVDIKE-LDSLSNLEELDMSDN------------AINN 193
           +L     L  + L  N         + + L   + LE L + +N            A+  
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 194 PVIPKDYRGLRKLNTLHLGGTEI 216
             + K  +    L ++  G   +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRL 171

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 15/102 (14%)

Query: 104 LESLDLTWNSIAGCVENKGL-DRLSRLNNLKFLHLDFNWFNN----SIFSSLGGLSSLKH 158
           +E   L  ++I    + K +   L   +++K + L  N         +  ++     L+ 
Sbjct: 6   IEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 159 LSLFHNRLNGSVDI---------KELDSLSNLEELDMSDNAI 191
                       D          + L     L  + +SDNA 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 24/112 (21%)

Query: 102 QQLESLDLTWNSIAGCVENKGLDRLSRL----NNLKFLHLDFNWF-------------NN 144
            +L ++ L+ N+          + L         L+ L+L  N                 
Sbjct: 94  PKLHTVRLSDNAF----GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 145 SIFSSLGGLSSLKHLSLFHNRL--NGSVDI-KELDSLSNLEELDMSDNAINN 193
           ++         L+ +    NRL      +  K   S   L  + M  N I  
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 19/116 (16%)

Query: 95  ASLFTPFQQLESLDLTWNSIAGCVENKGLDRL--SRLNNLKFLHLDFNWFNNSIFSSLGG 152
           A  F+ + + E   L   +      N+ +  L    +N    L L+    + S+  +L  
Sbjct: 27  ADYFSAWDKWEKQALPGENR-----NEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP- 79

Query: 153 LSSLKHLSLFHNRLNGSVDIKEL-DSLSNLEELDMSDNAINNPVIPKDYRGLRKLN 207
              +  L +  N L        L +  ++LE LD  DN ++   +P+    L+ L+
Sbjct: 80  -PQITVLEITQNAL------ISLPELPASLEYLDACDNRLST--LPELPASLKHLD 126

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 28/122 (22%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRL-SRLNNLKFLHLDFNWFNNSIFSSL-GGLSSLKH 158
              LE LD   N          L  L     +LK L +D N       + L    + L++
Sbjct: 99  PASLEYLDACDNR---------LSTLPELPASLKHLDVDNNQL-----TMLPELPALLEY 144

Query: 159 LSLFHNRLNGSVDIKEL-DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA 217
           ++  +N+L        L +  ++LE L + +N +    +P+       L  L +    + 
Sbjct: 145 INADNNQL------TMLPELPTSLEVLSVRNNQLT--FLPE---LPESLEALDVSTNLLE 193

Query: 218 MI 219
            +
Sbjct: 194 SL 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 44/139 (31%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLS 160
              L+ LD+  N +        L  L     L++++ D    NN +       +SL+ LS
Sbjct: 119 PASLKHLDVDNNQL------TMLPEL--PALLEYINAD----NNQLTMLPELPTSLEVLS 166

Query: 161 LFHNRLNGSVDIKEL-DSLSNLEELDMSDNAI-----------------------NN--P 194
           + +N+L        L +   +LE LD+S N +                        N   
Sbjct: 167 VRNNQLT------FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 195 VIPKDYRGLRKLNTLHLGG 213
            IP++   L    T+ L  
Sbjct: 221 HIPENILSLDPTCTIILED 239

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 101 FQQLESLDLTWNSIAGCVENKGLDRLS------RLNNLKFLHLDFNWFNNSIFSSLGG-- 152
              LE L L +  +     +  ++         R  NLK+L +      N +        
Sbjct: 218 LPNLEKLVL-YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276

Query: 153 -LSSLKHLSLFHNRL--NGSVDIKE-LDSLSNLEELDMSDNAI 191
            L  L+ + +    L   G+  + + +D + +L+ ++M  N +
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 95  ASLFTPFQQLESLDLT--WNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG 152
           A+L     QLE L        +   V +     LS    L+ L   ++     + +    
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLG 212
            S L  L+L +  +     +K L     L+ L + D  I +  +       + L  L + 
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346

Query: 213 GTEIAMIDG 221
            +E  +++ 
Sbjct: 347 PSEPFVMEP 355

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 23/118 (19%)

Query: 105 ESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-----GGLSSLKHL 159
             L L  N +   + + GL    RL +L  L L      N + + +      G S ++ L
Sbjct: 32  TELLLNDNELGR-ISSDGL--FGRLPHLVKLELK----RNQL-TGIEPNAFEGASHIQEL 83

Query: 160 SLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRG----LRKLNTLHLGG 213
            L  N++   +  K    L  L+ L++ DN I+   +     G    L  L +L+L  
Sbjct: 84  QLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC--VM---PGSFEHLNSLTSLNLAS 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.74
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.71
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.7
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.69
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.69
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.69
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.69
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.68
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.68
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.67
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.67
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.66
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.57
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.51
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.5
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.5
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.49
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.43
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.88
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.3
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.23
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.92
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.84
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.75
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.53
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.49

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.2e-29  Score=208.33  Aligned_cols=185  Identities=23%  Similarity=0.396  Sum_probs=153.8

Q ss_pred             CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCce--eeeEEECCCC--CcEEEEEcCCCCcccccccccCcccccCC
Q 027116           26 GCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQ--WERVECNETI--GRVIKLDLAQIRKWESAEWYMNASLFTPF  101 (228)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~~~~W~~~~~~~~~c~--~~gv~c~~~~--~~v~~L~l~~n~l~~~~~~~~~~~~~~~l  101 (228)
                      .|.++|+.||++||+.+.++..+.+|.   .+.+||.  |.||.|+...  ++|+.|+++++.+.  +...+ +..+..+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~--~~~~~-~~~l~~l   75 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP--KPYPI-PSSLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS--SCEEC-CGGGGGC
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCcc--CCccc-ChhHhCC
Confidence            699999999999999998776788994   4568898  9999998644  79999999999984  31112 3467889


Q ss_pred             CCCCEEeCCC-CCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116          102 QQLESLDLTW-NSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN  180 (228)
Q Consensus       102 ~~L~~L~ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~  180 (228)
                      ++|++|++++ |.+.+..|..    +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~  150 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPN  150 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTT
T ss_pred             CCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCC
Confidence            9999999995 8888877766    88889999999999999888888888899999999999999877777 7888999


Q ss_pred             CCEEEcccCCCCCCCChhhhcCCC-CCcEEECCCCcCCcccCC
Q 027116          181 LEELDMSDNAINNPVIPKDYRGLR-KLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       181 L~~L~L~~N~l~~~~p~~~~~~l~-~L~~L~L~~N~i~~i~~~  222 (228)
                      |++|++++|.+++.+|. .+..++ +|++|++++|+++...+.
T Consensus       151 L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~  192 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             CCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCG
T ss_pred             CCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccCCh
Confidence            99999999999876787 787787 888888888888744333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=7.5e-26  Score=206.01  Aligned_cols=186  Identities=25%  Similarity=0.271  Sum_probs=137.0

Q ss_pred             cCCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCceeeeEEECCCCCcEEEEEcCCCCcccccc-cc---------
Q 027116           23 WSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAE-WY---------   92 (228)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~W~~~~~~~~~c~~~gv~c~~~~~~v~~L~l~~n~l~~~~~-~~---------   92 (228)
                      ++.++.++|++||++||+.+.+|..+++|.   .+.+||.|.||+|+  .++|+.|+|+++.+...-. ..         
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKNLLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTTSSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcccccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            345668899999999999998776888994   56789999999998  6899999999998843100 00         


Q ss_pred             -----------cCcccccCCCCCCEEeCCCCCcccccCc--ccccccCCCCCCcEEECCCCccCccccccc-CCCCCCCE
Q 027116           93 -----------MNASLFTPFQQLESLDLTWNSIAGCVEN--KGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-GGLSSLKH  158 (228)
Q Consensus        93 -----------~~~~~~~~l~~L~~L~ls~n~l~~~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~  158 (228)
                                 ..+..++.+++|++|++++|.+++.++.  .    ++.+++|++|++++|.+++..|..+ ..+++|++
T Consensus        80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  155 (768)
T 3rgz_A           80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS----LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV  155 (768)
T ss_dssp             CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG----GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred             cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH----HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence                       0113567777888888888887766554  3    6777888888888888777666654 67788888


Q ss_pred             EeccCccccCccChhh---hcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          159 LSLFHNRLNGSVDIKE---LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       159 L~Ls~n~l~~~~p~~~---~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      |++++|.+++..|. .   +.++++|++|++++|.+.+..+   +..+++|++|++++|+++...+
T Consensus       156 L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~  217 (768)
T 3rgz_A          156 LDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIP  217 (768)
T ss_dssp             EECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCC
T ss_pred             EECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCc
Confidence            88888888754443 4   6777888888888888777333   3678888888888888876443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=3.2e-25  Score=198.06  Aligned_cols=181  Identities=20%  Similarity=0.261  Sum_probs=139.4

Q ss_pred             CCCcHHHHHHHHHHHhhCCCCC-C--------CCCCCCCCCCCCCcee---eeEEECCCCCcEEEEEcCCCCcccccccc
Q 027116           25 EGCLEQERSALLQIKHFFNGDQ-H--------LQNWVDDENYSDCCQW---ERVECNETIGRVIKLDLAQIRKWESAEWY   92 (228)
Q Consensus        25 ~~~~~~~~~~l~~~~~~~~~~~-~--------~~~W~~~~~~~~~c~~---~gv~c~~~~~~v~~L~l~~n~l~~~~~~~   92 (228)
                      .+...+|+.||.+++.++.+++ .        ..+|.   .+.++|.|   .||.|+. .++|+.|+|+++++  .|.  
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l--~g~--   96 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGA--SGR--   96 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCC--EEE--
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecCccc--CCc--
Confidence            3445689999999999987765 1        23794   56889999   9999986 48999999999998  444  


Q ss_pred             cCcccccCCCCCCEEeCCCCCc----------------------------------------------------------
Q 027116           93 MNASLFTPFQQLESLDLTWNSI----------------------------------------------------------  114 (228)
Q Consensus        93 ~~~~~~~~l~~L~~L~ls~n~l----------------------------------------------------------  114 (228)
                      + +..++.+++|++|++++|.+                                                          
T Consensus        97 l-p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~  175 (636)
T 4eco_A           97 V-PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI  175 (636)
T ss_dssp             E-CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred             C-ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence            2 35678889999999988854                                                          


Q ss_pred             --------------------ccccCcccccccCCCCCCcEEECCCCccCcc-----------------cccccC--CCCC
Q 027116          115 --------------------AGCVENKGLDRLSRLNNLKFLHLDFNWFNNS-----------------IFSSLG--GLSS  155 (228)
Q Consensus       115 --------------------~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~--~l~~  155 (228)
                                          ++ +|.    .++++++|++|+|++|.+++.                 +|..++  .+++
T Consensus       176 ~~~~~~~l~~l~l~~~~n~l~~-ip~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~  250 (636)
T 4eco_A          176 KKSSRITLKDTQIGQLSNNITF-VSK----AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD  250 (636)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEE-ECG----GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred             ccccccchhhhhhccccCCCcc-CCH----HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC
Confidence                                22 222    277788888888888888875                 788877  8888


Q ss_pred             CCEEeccCccccCccChhhhcCCCCCCEEEcccCC-CCC-CCChhhhcCC------CCCcEEECCCCcCCcccC
Q 027116          156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA-INN-PVIPKDYRGL------RKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~~l------~~L~~L~L~~N~i~~i~~  221 (228)
                      |++|++++|.+.+.+|. .++++++|++|++++|+ +++ .+|. .+..+      ++|++|++++|+++.+|.
T Consensus       251 L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~  322 (636)
T 4eco_A          251 LTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPV  322 (636)
T ss_dssp             CCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred             CCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCccCc
Confidence            88888888888877886 78888888888888887 776 5666 55554      777777777777776665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=1.7e-24  Score=198.41  Aligned_cols=186  Identities=19%  Similarity=0.243  Sum_probs=136.2

Q ss_pred             CCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCC--CCCCC--cee------------eeEEECCCCCcEEEEEcCCCCccc
Q 027116           24 SEGCLEQERSALLQIKHFFNGDQHLQNWVDDE--NYSDC--CQW------------ERVECNETIGRVIKLDLAQIRKWE   87 (228)
Q Consensus        24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~W~~~~--~~~~~--c~~------------~gv~c~~~~~~v~~L~l~~n~l~~   87 (228)
                      .+++..+|+.||++||+++.+|    +|..+.  ...+|  |.|            .||.|+. .++|+.|+|+++++  
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L--  335 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA--  335 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC--
T ss_pred             ccccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC--
Confidence            4556788999999999999876    685211  01244  999            9999986 68999999999999  


Q ss_pred             ccccccCcccccCCCCCCEEeC-CCCCcccccCcc---------------------------------------------
Q 027116           88 SAEWYMNASLFTPFQQLESLDL-TWNSIAGCVENK---------------------------------------------  121 (228)
Q Consensus        88 ~~~~~~~~~~~~~l~~L~~L~l-s~n~l~~~~~~~---------------------------------------------  121 (228)
                      .|.  + +..++++++|++|++ ++|.+.+..+..                                             
T Consensus       336 ~G~--i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~  412 (876)
T 4ecn_A          336 KGR--V-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP  412 (876)
T ss_dssp             EEE--E-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred             CCc--C-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence            444  2 356788889999999 777654431100                                             


Q ss_pred             ---------------------------cccccCCCCCCcEEECCCCccCc-----------------ccccccC--CCCC
Q 027116          122 ---------------------------GLDRLSRLNNLKFLHLDFNWFNN-----------------SIFSSLG--GLSS  155 (228)
Q Consensus       122 ---------------------------~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~  155 (228)
                                                 ++..+.++++|++|+|++|.+++                 .+|..++  .+++
T Consensus       413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~  492 (876)
T 4ecn_A          413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD  492 (876)
T ss_dssp             TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred             cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence                                       11237778888888888888887                 3777776  8888


Q ss_pred             CCEEeccCccccCccChhhhcCCCCCCEEEcccCC-CCC-CCChhhhcCC-------CCCcEEECCCCcCCcccC
Q 027116          156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA-INN-PVIPKDYRGL-------RKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~~l-------~~L~~L~L~~N~i~~i~~  221 (228)
                      |++|++++|.+.+.+|. .++++++|+.|++++|+ +++ .+|. .+..+       ++|++|++++|+++.||.
T Consensus       493 L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~  565 (876)
T 4ecn_A          493 LTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPA  565 (876)
T ss_dssp             CCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred             CCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence            88888888888777886 78888888888888887 776 5665 44333       377777777777776664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.89  E-value=3.6e-22  Score=156.72  Aligned_cols=151  Identities=19%  Similarity=0.243  Sum_probs=133.0

Q ss_pred             CCCCCceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccccccc
Q 027116           56 NYSDCCQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRL  126 (228)
Q Consensus        56 ~~~~~c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l  126 (228)
                      .....|.|.++.|..         ....++.|++++|.+..     +.+..|..+++|++|++++|.++..++..    |
T Consensus        14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~----~   84 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK-----LEPGVFDSLINLKELYLGSNQLGALPVGV----F   84 (229)
T ss_dssp             CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTTT----T
T ss_pred             CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc-----cCHHHhhCccCCcEEECCCCCCCCcChhh----c
Confidence            367789999999975         24578999999999954     34566889999999999999998877665    7


Q ss_pred             CCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC
Q 027116          127 SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL  206 (228)
Q Consensus       127 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L  206 (228)
                      ..+++|++|+|++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|++++ ++...+..+++|
T Consensus        85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  161 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKS-IPHGAFDRLSSL  161 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCc-cCHHHHhCCCCC
Confidence            89999999999999999777777899999999999999998 7887 88999999999999999998 665589999999


Q ss_pred             cEEECCCCcCCc
Q 027116          207 NTLHLGGTEIAM  218 (228)
Q Consensus       207 ~~L~L~~N~i~~  218 (228)
                      +.|++++|+++.
T Consensus       162 ~~L~l~~N~~~c  173 (229)
T 3e6j_A          162 THAYLFGNPWDC  173 (229)
T ss_dssp             CEEECTTSCBCT
T ss_pred             CEEEeeCCCccC
Confidence            999999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=3.1e-24  Score=177.23  Aligned_cols=181  Identities=15%  Similarity=0.209  Sum_probs=109.7

Q ss_pred             CCCcHHHHHHHHHHHhhCC-CCC-CCCCCC-CCCCCCCCceeeeEEECC--------CCCcEEEEEcCCCCccccccccc
Q 027116           25 EGCLEQERSALLQIKHFFN-GDQ-HLQNWV-DDENYSDCCQWERVECNE--------TIGRVIKLDLAQIRKWESAEWYM   93 (228)
Q Consensus        25 ~~~~~~~~~~l~~~~~~~~-~~~-~~~~W~-~~~~~~~~c~~~gv~c~~--------~~~~v~~L~l~~n~l~~~~~~~~   93 (228)
                      .++..+|+.||++||..+. ++. ....|. ......++|.|.|+.|..        ...+|+.|++++|++....    
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp----   97 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP----   97 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCC----
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcC----
Confidence            3456689999999999873 443 556773 113467889999999942        3478999999999985322    


Q ss_pred             CcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChh
Q 027116           94 NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIK  173 (228)
Q Consensus        94 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  173 (228)
                        ..+..+++|++|++++|.++. .|..    +..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|. 
T Consensus        98 --~~l~~l~~L~~L~L~~n~l~~-lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~-  168 (328)
T 4fcg_A           98 --DQAFRLSHLQHMTIDAAGLME-LPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE-  168 (328)
T ss_dssp             --SCGGGGTTCSEEEEESSCCCC-CCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-
T ss_pred             --hhhhhCCCCCEEECCCCCccc-hhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-
Confidence              234557777777777777763 3333    566666666666666666 4555566666666666666555444443 


Q ss_pred             hhc---------CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          174 ELD---------SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       174 ~~~---------~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      .+.         .+++|++|++++|.++. +|. .+..+++|++|++++|+++.++
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~-~l~~l~~L~~L~L~~N~l~~l~  222 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWTGIRS-LPA-SIANLQNLKSLKIRNSPLSALG  222 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEECCCC-CCG-GGGGCTTCCEEEEESSCCCCCC
T ss_pred             hHhhccchhhhccCCCCCEEECcCCCcCc-chH-hhcCCCCCCEEEccCCCCCcCc
Confidence            222         24455555555555543 444 4444445555555555444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=8.7e-22  Score=156.46  Aligned_cols=141  Identities=23%  Similarity=0.308  Sum_probs=115.6

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+..
T Consensus        35 ~~l~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  105 (251)
T 3m19_A           35 ADTEKLDLQSTGLAT-----LSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDH  105 (251)
T ss_dssp             TTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCCEEEccCCCcCc-----cCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhcc
Confidence            467888888888854     33456788899999999999998877765    788899999999999998777777888


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      +++|++|++++|.++ .++...+..+++|+.|++++|.+++ ++...|..+++|++|++++|+++.++...+
T Consensus       106 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A          106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence            899999999999998 5666467888999999999999988 555478888899999999999988887554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.9e-21  Score=156.11  Aligned_cols=139  Identities=24%  Similarity=0.280  Sum_probs=73.1

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccC----------
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN----------  143 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~----------  143 (228)
                      .++.|++++|.+..     +.+..|..+++|++|++++|.++...+..    |..+++|++|++++|.++          
T Consensus        38 ~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l  108 (270)
T 2o6q_A           38 DTKKLDLQSNKLSS-----LPSKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLWVTDNKLQALPIGVFDQL  108 (270)
T ss_dssp             TCSEEECCSSCCSC-----CCTTSSSSCTTCCEEECCSSCCSCCCTTT----TSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEECcCCCCCe-----eCHHHhcCCCCCCEEECCCCccCeeChhh----hcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence            46677777776643     22334556666666666666665544432    344455555555555444          


Q ss_pred             --------------cccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116          144 --------------NSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL  209 (228)
Q Consensus       144 --------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L  209 (228)
                                    +..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+++ ++...|..+++|++|
T Consensus       109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  186 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTL  186 (270)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEE
Confidence                          443344444555555555555554 3333234555555555555555555 333245555556666


Q ss_pred             ECCCCcCCcccCCc
Q 027116          210 HLGGTEIAMIDGSK  223 (228)
Q Consensus       210 ~L~~N~i~~i~~~~  223 (228)
                      ++++|+++.++...
T Consensus       187 ~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          187 KLDNNQLKRVPEGA  200 (270)
T ss_dssp             ECCSSCCSCCCTTT
T ss_pred             ECCCCcCCcCCHHH
Confidence            66666655555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=4.5e-21  Score=148.03  Aligned_cols=148  Identities=23%  Similarity=0.313  Sum_probs=127.7

Q ss_pred             CceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCC
Q 027116           60 CCQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN  130 (228)
Q Consensus        60 ~c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~  130 (228)
                      .|.|.++.|..         ...+++.|++++|.+..     +.+..|..+++|++|++++|++++.++..    +..++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~   76 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-----LPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKLT   76 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-----CChhhhcccccCcEEECCCCccCccChhh----cCCCC
Confidence            37899999965         23468999999999854     34556889999999999999999877665    78899


Q ss_pred             CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEE
Q 027116          131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLH  210 (228)
Q Consensus       131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~  210 (228)
                      +|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+++ ++...+..+++|++|+
T Consensus        77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEE
T ss_pred             CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEE
Confidence            9999999999999777777899999999999999998 5666468999999999999999998 6664789999999999


Q ss_pred             CCCCcCCc
Q 027116          211 LGGTEIAM  218 (228)
Q Consensus       211 L~~N~i~~  218 (228)
                      +++|++..
T Consensus       155 l~~N~~~~  162 (208)
T 2o6s_A          155 LHDNPWDC  162 (208)
T ss_dssp             CCSCCBCC
T ss_pred             ecCCCeec
Confidence            99998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=3.8e-21  Score=150.04  Aligned_cols=147  Identities=25%  Similarity=0.371  Sum_probs=126.8

Q ss_pred             ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116           61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN  131 (228)
Q Consensus        61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~  131 (228)
                      |.|..+.|.+         ....++.|++++|++..     +.+..|..+++|++|++++|.+++..+..    |.++++
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l~~   81 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV-----IPPGAFSPYKKLRRIDLSNNQISELAPDA----FQGLRS   81 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECCSSCCCEECTTT----TTTCSS
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC-----cCHhHhhCCCCCCEEECCCCcCCCcCHHH----hhCCcC
Confidence            7888888864         23478999999999854     44567889999999999999999887766    899999


Q ss_pred             CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEEC
Q 027116          132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL  211 (228)
Q Consensus       132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L  211 (228)
                      |++|+|++|.++...+..|..+++|++|+|++|.+++ ++...+..+++|+.|+|++|.+++ ++...|..+++|++|++
T Consensus        82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEe
Confidence            9999999999997666678999999999999999985 544489999999999999999999 55547999999999999


Q ss_pred             CCCcCCc
Q 027116          212 GGTEIAM  218 (228)
Q Consensus       212 ~~N~i~~  218 (228)
                      ++|++..
T Consensus       160 ~~N~~~c  166 (220)
T 2v9t_B          160 AQNPFIC  166 (220)
T ss_dssp             CSSCEEC
T ss_pred             CCCCcCC
Confidence            9998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=5.2e-21  Score=149.27  Aligned_cols=148  Identities=23%  Similarity=0.281  Sum_probs=126.9

Q ss_pred             ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116           61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN  131 (228)
Q Consensus        61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~  131 (228)
                      |.|..+.|.+         ....++.|++++|.+....    +...|..+++|++|++++|.+++..+..    |..+++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~   82 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLE----ATGIFKKLPQLRKINFSNNKITDIEEGA----FEGASG   82 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC----CCCCGGGCTTCCEEECCSSCCCEECTTT----TTTCTT
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccC----chhhhccCCCCCEEECCCCcCCEECHHH----hCCCCC
Confidence            6788888854         1345789999999985432    2345789999999999999999987765    899999


Q ss_pred             CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEEC
Q 027116          132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL  211 (228)
Q Consensus       132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L  211 (228)
                      |++|+|++|.+++..+..+..+++|++|++++|.+++..|. .+..+++|+.|++++|.+++..|. .|..+++|++|++
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L  160 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNL  160 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEe
Confidence            99999999999988888899999999999999999954444 899999999999999999995465 8999999999999


Q ss_pred             CCCcCCc
Q 027116          212 GGTEIAM  218 (228)
Q Consensus       212 ~~N~i~~  218 (228)
                      ++|+++.
T Consensus       161 ~~N~l~c  167 (220)
T 2v70_A          161 LANPFNC  167 (220)
T ss_dssp             CSCCEEC
T ss_pred             cCcCCcC
Confidence            9999863

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=3.3e-20  Score=164.33  Aligned_cols=142  Identities=25%  Similarity=0.294  Sum_probs=126.0

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      +..++.|||++|.|+.     +++..|..+++|++|++++|+|++.++..    |.++++|++|+|++|++++..+..|.
T Consensus        51 p~~~~~LdLs~N~i~~-----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             CcCCCEEEeeCCCCCC-----CCHHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            3578999999999965     45677999999999999999999988776    89999999999999999977777899


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCC-CChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNP-VIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      ++++|++|++++|+++ .++...++.+++|++|++++|.+++. .|. .+..+++|++|++++|+|+.++...+
T Consensus       122 ~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             TCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccccccccccc
Confidence            9999999999999998 57765799999999999999999873 455 88899999999999999998876654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=4.2e-20  Score=154.26  Aligned_cols=151  Identities=22%  Similarity=0.282  Sum_probs=127.9

Q ss_pred             ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCccccc-CCCCCCEEeCCCCCcccccCcccccccCCCC
Q 027116           61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFT-PFQQLESLDLTWNSIAGCVENKGLDRLSRLN  130 (228)
Q Consensus        61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~  130 (228)
                      |.+..+.|..         ....++.|+|++|.+..     +....+. .+++|++|++++|++++..+..    |..++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~   88 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-----LRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVP   88 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-----ECTTSSSSCCTTCCEEECCSSCCCEECTTT----TTTCT
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-----cChhhhhhcccccCEEECCCCcCCccChhh----ccCCC
Confidence            6777788854         23457899999999865     3345566 8999999999999999988766    89999


Q ss_pred             CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhh---cCCCCCc
Q 027116          131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY---RGLRKLN  207 (228)
Q Consensus       131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~~l~~L~  207 (228)
                      +|++|+|++|+++...+..|..+++|++|+|++|.++ .++...+..+++|+.|+|++|.+++ +|...|   ..+++|+
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLM  166 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCC
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCC
Confidence            9999999999999777778999999999999999998 4554489999999999999999998 787455   5789999


Q ss_pred             EEECCCCcCCcccCC
Q 027116          208 TLHLGGTEIAMIDGS  222 (228)
Q Consensus       208 ~L~L~~N~i~~i~~~  222 (228)
                      +|+|++|+|+.++..
T Consensus       167 ~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          167 LLDLSSNKLKKLPLT  181 (361)
T ss_dssp             EEECCSSCCCCCCHH
T ss_pred             EEECCCCCCCccCHH
Confidence            999999999998854

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.4e-19  Score=145.22  Aligned_cols=136  Identities=23%  Similarity=0.339  Sum_probs=111.0

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.|++++|.+..     ++...|..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+..
T Consensus        85 ~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~  155 (270)
T 2o6q_A           85 KNLETLWVTDNKLQA-----LPIGVFDQLVNLAELRLDRNQLKSLPPRV----FDSLTKLTYLSLGYNELQSLPKGVFDK  155 (270)
T ss_dssp             TTCCEEECCSSCCCC-----CCTTTTTTCSSCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCEEECCCCcCCc-----CCHhHcccccCCCEEECCCCccCeeCHHH----hCcCcCCCEEECCCCcCCccCHhHccC
Confidence            345566666665532     33345677788888888888887776655    788999999999999999777667899


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i  219 (228)
                      +++|++|++++|.++ .++...+..+++|++|++++|.+++ ++...+..+++|++|++++|++..-
T Consensus       156 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          156 LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeCC
Confidence            999999999999998 5666578999999999999999998 6665789999999999999998653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=2e-19  Score=142.73  Aligned_cols=137  Identities=26%  Similarity=0.331  Sum_probs=121.0

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+..     +.+..|..+++|++|++++|.+++.++..    +..+++|++|++++|.+++..+..+.
T Consensus        58 l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~  128 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQT-----LSAGVFDDLTELGTLGLANNQLASLPLGV----FDHLTQLDKLYLGGNQLKSLPSGVFD  128 (251)
T ss_dssp             CTTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccCCEEECCCCcCCc-----cCHhHhccCCcCCEEECCCCcccccChhH----hcccCCCCEEEcCCCcCCCcChhHhc
Confidence            4689999999999854     34566889999999999999999877765    88999999999999999977777789


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i  219 (228)
                      .+++|++|++++|.++ .++...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++..
T Consensus       129 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          129 RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999999999999998 5666579999999999999999998 5554899999999999999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=2.8e-19  Score=143.61  Aligned_cols=138  Identities=27%  Similarity=0.282  Sum_probs=85.3

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.|++++|.+...       ..+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+..
T Consensus        63 ~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  131 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI-------SALKELTNLTYLILTGNQLQSLPNGV----FDKLTNLKELVLVENQLQSLPDGVFDK  131 (272)
T ss_dssp             TTCCEEECTTSCCCCC-------GGGTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCCc-------hhhcCCCCCCEEECCCCccCccChhH----hcCCcCCCEEECCCCcCCccCHHHhcc
Confidence            4566777777766431       23556666677777776666655544    566666666666666666555555666


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK  223 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~  223 (228)
                      +++|++|++++|.++ .++...+..+++|+.|++++|++++ ++...+..+++|++|++++|+++.++...
T Consensus       132 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGV  200 (272)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             CCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence            666666666666666 3444345666666666666666666 33325566666666666666666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=3.8e-19  Score=142.90  Aligned_cols=142  Identities=24%  Similarity=0.278  Sum_probs=112.8

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ...++.|++++|++...     .+..|..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+.
T Consensus        27 ~~~l~~L~ls~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHL-----GSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             CTTCCEEECTTCCCCEE-----CTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCCccEEECCCCccccc-----CHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhc
Confidence            34688999999988543     3346788889999999999888776655    78888999999999998877777888


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCC-CChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNP-VIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      .+++|++|++++|.+++ ++...+..+++|++|++++|.+++. +|. .+..+++|++|++++|+++.++...+
T Consensus        98 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           98 GLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             TCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcCCHHHh
Confidence            88889999999888874 5544678888888999988888762 466 78888888888888888888765433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=2.1e-19  Score=153.84  Aligned_cols=157  Identities=24%  Similarity=0.317  Sum_probs=129.5

Q ss_pred             CCceeee--EEECCC--------CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccccc-CcccccccC
Q 027116           59 DCCQWER--VECNET--------IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCV-ENKGLDRLS  127 (228)
Q Consensus        59 ~~c~~~g--v~c~~~--------~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~l~  127 (228)
                      ..|.|.+  +.|...        ..+++.|++++|.+..     +.+..|..+++|++|++++|.+.+.. +..    |.
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~----~~   76 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE-----LNETSFSRLQDLQFLKVEQQTPGLVIRNNT----FR   76 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCE-----ECTTTTSSCTTCCEEECCCCSTTCEECTTT----TT
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCc-----CChhHhccCccccEEECcCCcccceECccc----cc
Confidence            4566555  777642        2579999999999854     34567899999999999999997554 333    88


Q ss_pred             CCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC
Q 027116          128 RLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL  206 (228)
Q Consensus       128 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L  206 (228)
                      ++++|++|++++|.+++..|..+..+++|++|++++|.+++.++. ..+..+++|++|++++|.+++..|...+.++++|
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence            999999999999999988899999999999999999999865443 1388999999999999999996566348899999


Q ss_pred             cEEECCCCcCCcccCCcc
Q 027116          207 NTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       207 ~~L~L~~N~i~~i~~~~~  224 (228)
                      ++|++++|+++.+....+
T Consensus       157 ~~L~L~~n~l~~~~~~~l  174 (455)
T 3v47_A          157 HVLDLTFNKVKSICEEDL  174 (455)
T ss_dssp             CEEECTTCCBSCCCTTTS
T ss_pred             cEEeCCCCcccccChhhh
Confidence            999999999998876654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=2.7e-19  Score=144.43  Aligned_cols=138  Identities=24%  Similarity=0.242  Sum_probs=69.9

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCc-cCcccccccC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW-FNNSIFSSLG  151 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~  151 (228)
                      ..++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    +..+++|++|++++|. ++...|..+.
T Consensus        32 ~~l~~L~l~~n~i~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~  102 (285)
T 1ozn_A           32 AASQRIFLHGNRISH-----VPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFH  102 (285)
T ss_dssp             TTCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCceEEEeeCCcCCc-----cCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhc
Confidence            456666666666643     22334555555666666665555544433    4555555555555554 4444344455


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+++|++|++++|.+++ ++...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++.++.
T Consensus       103 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A          103 GLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCcccccCH
Confidence            55555555555555542 222244455555555555555554 332234445555555555555554444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=5.4e-19  Score=137.77  Aligned_cols=136  Identities=21%  Similarity=0.243  Sum_probs=118.5

Q ss_pred             EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116           76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS  155 (228)
Q Consensus        76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  155 (228)
                      +.+++++++++..+.     ..   .+++++|++++|.+++..+..    |..+++|++|+|++|.+++..|..|..+++
T Consensus        14 ~~v~c~~~~l~~iP~-----~l---~~~l~~L~l~~n~i~~i~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~   81 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-----NL---PETITEIRLEQNTIKVIPPGA----FSPYKKLRRIDLSNNQISELAPDAFQGLRS   81 (220)
T ss_dssp             TEEECTTSCCSSCCS-----SC---CTTCCEEECCSSCCCEECTTS----STTCTTCCEEECCSSCCCEECTTTTTTCSS
T ss_pred             CEEEcCCCCcCcCCC-----cc---CcCCCEEECCCCcCCCcCHhH----hhCCCCCCEEECCCCcCCCcCHHHhhCCcC
Confidence            368999998865332     21   268999999999999887765    899999999999999999888999999999


Q ss_pred             CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116          156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      |++|+|++|.++ .+|...+..+++|+.|+|++|.+++..+. .|..+++|++|+|++|+|+.++...|.
T Consensus        82 L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~  149 (220)
T 2v9t_B           82 LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFS  149 (220)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEECHHHHh
Confidence            999999999998 68876789999999999999999994455 899999999999999999999987553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=4.6e-19  Score=143.80  Aligned_cols=120  Identities=25%  Similarity=0.307  Sum_probs=89.7

Q ss_pred             cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116           99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL  178 (228)
Q Consensus        99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  178 (228)
                      ..+++|++|++++|.++..+. .    +..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|...+..+
T Consensus        74 ~~l~~L~~L~Ls~N~l~~l~~-~----~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l  147 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQSLPL-L----GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT  147 (290)
T ss_dssp             SCCTTCCEEECCSSCCSSCCC-C----TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred             CCCCcCCEEECCCCcCCcCch-h----hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccc
Confidence            455666666666666654332 2    667888888888888888766677888888888888888887 5665567788


Q ss_pred             CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116          179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      ++|+.|++++|++++ +|...|..+++|++|++++|+|+.+|...+.
T Consensus       148 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~  193 (290)
T 1p9a_G          148 PKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFG  193 (290)
T ss_dssp             TTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCCccChhhcc
Confidence            888888888888887 6664677888888888888888888776543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=4.3e-19  Score=157.18  Aligned_cols=142  Identities=23%  Similarity=0.253  Sum_probs=125.8

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    |.++++|++|++++|.+++..|..++
T Consensus        31 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~  101 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKI-----LKSYSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFS  101 (606)
T ss_dssp             CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred             CCCcCEEECCCCCcCE-----eChhhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcC
Confidence            4679999999999854     44567899999999999999999987766    89999999999999999988899999


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC-CCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN-PVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      .+++|++|++++|.++ .++...++.+++|++|++++|.+++ .+|. .+.++++|++|++++|+++.++...+
T Consensus       102 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~  173 (606)
T 3vq2_A          102 GLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDL  173 (606)
T ss_dssp             TCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceecChhhh
Confidence            9999999999999998 4554479999999999999999986 4677 89999999999999999999877654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=3.4e-19  Score=152.36  Aligned_cols=147  Identities=23%  Similarity=0.261  Sum_probs=89.3

Q ss_pred             eeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCc
Q 027116           63 WERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLK  133 (228)
Q Consensus        63 ~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~  133 (228)
                      +..+.|..         ....++.|++++|++..     +.+..|..+++|++|++++|.+++..+..    |.++++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQI-----IKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE-----ECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe-----eCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCC
Confidence            45667753         23467888888888754     33455777777888888888777765554    67777777


Q ss_pred             EEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCC
Q 027116          134 FLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG  213 (228)
Q Consensus       134 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~  213 (228)
                      +|+|++|+++...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|+..+.++...|.++++|++|++++
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            7777777777555556777777777777777776 444434555555555555553222223333344444444444444


Q ss_pred             CcCCcc
Q 027116          214 TEIAMI  219 (228)
Q Consensus       214 N~i~~i  219 (228)
                      |+++.+
T Consensus       195 n~l~~~  200 (440)
T 3zyj_A          195 CNLREI  200 (440)
T ss_dssp             SCCSSC
T ss_pred             CcCccc
Confidence            444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=9.1e-20  Score=151.57  Aligned_cols=155  Identities=26%  Similarity=0.365  Sum_probs=121.7

Q ss_pred             CCCceeeeEEECC-----------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccccccc
Q 027116           58 SDCCQWERVECNE-----------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRL  126 (228)
Q Consensus        58 ~~~c~~~gv~c~~-----------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l  126 (228)
                      ...|.|.++ |+.           ....++.|++++|.+..     +....+..+++|++|++++|.+++..+..    +
T Consensus        27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~   96 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----ISNSDLQRCVNLQALVLTSNGINTIEEDS----F   96 (353)
T ss_dssp             CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTTT----T
T ss_pred             CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----cCHHHhccCCCCCEEECCCCccCccCHhh----c
Confidence            456777766 432           23478999999999854     34456888999999999999999877765    8


Q ss_pred             CCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCC-CCCCCChhhhcCCC
Q 027116          127 SRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNA-INNPVIPKDYRGLR  204 (228)
Q Consensus       127 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~  204 (228)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. ..+..+++|++|++++|. +.+ ++...+.+++
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~  174 (353)
T 2z80_A           97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLT  174 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCC
T ss_pred             CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCC
Confidence            88999999999999998666556888999999999999998 5664 467888999999999884 665 5443788888


Q ss_pred             CCcEEECCCCcCCcccCCcc
Q 027116          205 KLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       205 ~L~~L~L~~N~i~~i~~~~~  224 (228)
                      +|++|++++|+++.+....+
T Consensus       175 ~L~~L~l~~n~l~~~~~~~l  194 (353)
T 2z80_A          175 FLEELEIDASDLQSYEPKSL  194 (353)
T ss_dssp             EEEEEEEEETTCCEECTTTT
T ss_pred             CCCEEECCCCCcCccCHHHH
Confidence            88888888888887755543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=5.2e-19  Score=151.76  Aligned_cols=148  Identities=24%  Similarity=0.300  Sum_probs=104.7

Q ss_pred             eeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCc
Q 027116           63 WERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLK  133 (228)
Q Consensus        63 ~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~  133 (228)
                      |..+.|..         ....++.|++++|++..     +.+..|..+++|++|++++|.+++..+..    |.++++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-----IQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCce-----ECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCC
Confidence            46677754         23578999999999854     34566888999999999999998877665    88888999


Q ss_pred             EEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCC
Q 027116          134 FLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG  213 (228)
Q Consensus       134 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~  213 (228)
                      +|+|++|.++...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|...+.++...|.++++|++|++++
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  205 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM  205 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence            9999999888766667888888888888888887 565545666666666666653322224443455555555555555


Q ss_pred             CcCCccc
Q 027116          214 TEIAMID  220 (228)
Q Consensus       214 N~i~~i~  220 (228)
                      |+++.++
T Consensus       206 n~l~~~~  212 (452)
T 3zyi_A          206 CNIKDMP  212 (452)
T ss_dssp             SCCSSCC
T ss_pred             Ccccccc
Confidence            5555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=7.2e-19  Score=142.65  Aligned_cols=140  Identities=21%  Similarity=0.254  Sum_probs=122.6

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ...++.|++++|.+..     +.+..|..+++|++|++++|.+++..+      ...+++|++|++++|.++ .+|..+.
T Consensus        30 ~~~l~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~-~l~~~~~   97 (290)
T 1p9a_G           30 PKDTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ-SLPLLGQ   97 (290)
T ss_dssp             CTTCCEEECTTSCCSE-----EEGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-SCCCCTT
T ss_pred             CCCCCEEEcCCCcCCc-----cCHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-cCchhhc
Confidence            3578999999999854     334568899999999999999998655      467999999999999998 6778889


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      .+++|++|++++|+++ .+|...+..+++|+.|++++|++++ +|...|..+++|+.|++++|+|+.++...|.
T Consensus        98 ~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  169 (290)
T 1p9a_G           98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (290)
T ss_dssp             TCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             cCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence            9999999999999998 5665589999999999999999998 6665789999999999999999999987653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=1.1e-18  Score=140.88  Aligned_cols=119  Identities=24%  Similarity=0.297  Sum_probs=64.4

Q ss_pred             cccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116           97 LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD  176 (228)
Q Consensus        97 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  176 (228)
                      .+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+.
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~  174 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGL----FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFR  174 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTT
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhH----hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhc
Confidence            3444455555555555554443333    455555555555555555444444555555555565555555 34433455


Q ss_pred             CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+++|+.|++++|.+++..|. .+..+++|++|++++|+++.++.
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          175 GLHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCH
T ss_pred             CccccCEEECCCCcccccCHh-HccCcccccEeeCCCCcCCcCCH
Confidence            556666666666666553344 55566666666666666665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2.1e-18  Score=135.25  Aligned_cols=142  Identities=23%  Similarity=0.191  Sum_probs=120.7

Q ss_pred             eeeEEECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCcc
Q 027116           63 WERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWF  142 (228)
Q Consensus        63 ~~gv~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l  142 (228)
                      +..-.|.     .+.++.+++++.....     .   -.++|++|++++|.+++..+..    +..+++|++|+|++|.+
T Consensus        14 ~~~~~Cs-----~~~v~c~~~~l~~ip~-----~---~~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~N~l   76 (229)
T 3e6j_A           14 PSQCSCS-----GTTVDCRSKRHASVPA-----G---IPTNAQILYLHDNQITKLEPGV----FDSLINLKELYLGSNQL   76 (229)
T ss_dssp             CTTCEEE-----TTEEECTTSCCSSCCS-----C---CCTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCC
T ss_pred             CCCCEEe-----CCEeEccCCCcCccCC-----C---CCCCCCEEEcCCCccCccCHHH----hhCccCCcEEECCCCCC
Confidence            4455674     2468999998854332     2   2388999999999999987766    89999999999999999


Q ss_pred             CcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          143 NNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       143 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      +...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|+++. +|. .+..+++|++|++++|+|+.++..
T Consensus        77 ~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           77 GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             CCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCcCCccCHH
Confidence            8766677899999999999999998 5776578999999999999999996 888 889999999999999999999876


Q ss_pred             cc
Q 027116          223 KV  224 (228)
Q Consensus       223 ~~  224 (228)
                      .|
T Consensus       154 ~~  155 (229)
T 3e6j_A          154 AF  155 (229)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=2e-18  Score=134.55  Aligned_cols=136  Identities=19%  Similarity=0.193  Sum_probs=115.6

Q ss_pred             EEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCC
Q 027116           77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL  156 (228)
Q Consensus        77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  156 (228)
                      .+++++|.++.++     .. +  ...+++|++++|.+++..+...   |..+++|++|++++|.+++..+..|..+++|
T Consensus        15 ~l~~s~n~l~~iP-----~~-~--~~~~~~L~L~~N~l~~~~~~~~---~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A           15 TVDCSNQKLNKIP-----EH-I--PQYTAELRLNNNEFTVLEATGI---FKKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             EEECCSSCCSSCC-----SC-C--CTTCSEEECCSSCCCEECCCCC---GGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             EeEeCCCCcccCc-----cC-C--CCCCCEEEcCCCcCCccCchhh---hccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            7999999986532     22 1  3457899999999998855322   7889999999999999998877789999999


Q ss_pred             CEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116          157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       157 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      ++|++++|.++ .++...+..+++|++|++++|++++..|. .|..+++|++|+|++|+|+.+++..|.
T Consensus        84 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           84 NEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             CEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             CEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhc
Confidence            99999999998 56665799999999999999999995455 899999999999999999999776553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=1.5e-18  Score=139.34  Aligned_cols=137  Identities=21%  Similarity=0.285  Sum_probs=120.0

Q ss_pred             CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116           71 TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL  150 (228)
Q Consensus        71 ~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  150 (228)
                      ...+++.|++++|.+..     +.+..+..+++|++|++++|.+++.++..    +..+++|++|++++|.+++..+..+
T Consensus        83 ~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~  153 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQS-----LPNGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLPKGVF  153 (272)
T ss_dssp             TCTTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCEEECCCCccCc-----cChhHhcCCcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccCHHHh
Confidence            35689999999999854     44556889999999999999999887765    7899999999999999998777778


Q ss_pred             CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116          151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      ..+++|++|++++|.++ .++...+..+++|+.|++++|.+++ ++...+..+++|++|++++|++..
T Consensus       154 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          154 DKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccc
Confidence            99999999999999998 4665478999999999999999999 555478999999999999999864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=4.2e-19  Score=155.41  Aligned_cols=154  Identities=23%  Similarity=0.284  Sum_probs=128.0

Q ss_pred             CceeeeEEECC-----------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCC
Q 027116           60 CCQWERVECNE-----------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSR  128 (228)
Q Consensus        60 ~c~~~gv~c~~-----------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~  128 (228)
                      .|.|.++ |+.           ....++.|++++|.+..     +.+..|..+++|++|++++|++++..+..    |..
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~   72 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----IGHGDLRACANLQVLILKSSRINTIEGDA----FYS   72 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----ECSSTTSSCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc-----cChhhhhcCCcccEEECCCCCcCccChhh----ccc
Confidence            4777777 642           23479999999999854     33456899999999999999999988766    899


Q ss_pred             CCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccC-ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc
Q 027116          129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN  207 (228)
Q Consensus       129 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~  207 (228)
                      +++|++|++++|.+++..|..++.+++|++|++++|.+++ .+|. .++.+++|++|++++|.+.+.++...+.++++|+
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  151 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN  151 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence            9999999999999998888789999999999999999984 2444 7899999999999999855547755889999999


Q ss_pred             EEECCCCcCCcccCCcc
Q 027116          208 TLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       208 ~L~L~~N~i~~i~~~~~  224 (228)
                      +|++++|+++.+.+..+
T Consensus       152 ~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          152 ELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             EEEEEETTCCEECTTTT
T ss_pred             eeeccCCcccccChhhh
Confidence            99999999987655443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=6.7e-19  Score=148.18  Aligned_cols=139  Identities=19%  Similarity=0.234  Sum_probs=118.1

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.++++++.+..     ++...+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..|..+..
T Consensus        45 ~~l~~l~l~~~~l~~-----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             CCCSEEEEESCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCceEEEecCCchhh-----CChhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence            567788888887754     44556788999999999999998877755    889999999999999999888888999


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      +++|++|++++|.++ .+|...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++.++..
T Consensus       116 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~  183 (390)
T 3o6n_A          116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLS  183 (390)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCCGG
T ss_pred             CCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccccc
Confidence            999999999999998 6887567899999999999999998 4443789999999999999999887543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=2.6e-19  Score=140.97  Aligned_cols=140  Identities=15%  Similarity=0.243  Sum_probs=113.1

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCC-cccccCcccccccCCCCCCcEEECCC-CccCcccccc
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNS-IAGCVENKGLDRLSRLNNLKFLHLDF-NWFNNSIFSS  149 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~  149 (228)
                      ...++.|++++|++..     +++..|..+++|++|++++|. ++...+..    |.++++|++|++++ |.++...+..
T Consensus        30 ~~~l~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRT-----IPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CTTCCEEEEESCCCSE-----ECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTS
T ss_pred             CCcccEEEEeCCcceE-----ECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHH
Confidence            4578999999999854     344568889999999999997 88776655    78899999999998 8998766677


Q ss_pred             cCCCCCCCEEeccCccccCccChhhhcCCCCCC---EEEcccC-CCCCCCChhhhcCCCCCc-EEECCCCcCCcccCCcc
Q 027116          150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE---ELDMSDN-AINNPVIPKDYRGLRKLN-TLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       150 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~~l~~L~-~L~L~~N~i~~i~~~~~  224 (228)
                      |..+++|++|++++|.++ .+|  .+..+++|+   .|++++| .+++ ++...|.++++|+ +|++++|+++.++...|
T Consensus       101 f~~l~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLK-MFP--DLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             EECCTTCCEEEEEEECCC-SCC--CCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred             hCCCCCCCEEeCCCCCCc-ccc--ccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence            888999999999999887 477  377777787   8888888 8877 5554688888888 88888888888877655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.78  E-value=3.9e-19  Score=132.63  Aligned_cols=140  Identities=24%  Similarity=0.256  Sum_probs=119.0

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+.. +.  + +..+..+++|++|++++|.+++. . .    +..+++|++|++++|.+++.+|..+.
T Consensus        23 ~~~L~~L~l~~n~l~~-~~--i-~~~~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           23 PAAVRELVLDNCKSND-GK--I-EGLTAEFVNLEFLSLINVGLISV-S-N----LPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             TTSCSEEECCSCBCBT-TB--C-SSCCGGGGGCCEEEEESSCCCCC-S-S----CCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             cccCCEEECCCCCCCh-hh--H-HHHHHhCCCCCEEeCcCCCCCCh-h-h----hccCCCCCEEECcCCcCchHHHHHHh
Confidence            4679999999999851 22  2 33478899999999999999886 3 2    89999999999999999987888787


Q ss_pred             CCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCCh---hhhcCCCCCcEEECCCCcCCcccCCc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIP---KDYRGLRKLNTLHLGGTEIAMIDGSK  223 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~L~~N~i~~i~~~~  223 (228)
                      .+++|++|++++|.+++ ++. ..+..+++|+.|++++|.+++ ++.   ..+..+++|++|++++|.+.++|...
T Consensus        93 ~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  166 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAPDSD  166 (168)
T ss_dssp             HCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred             hCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence            89999999999999984 542 388999999999999999998 554   47899999999999999999988653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=2.5e-18  Score=131.23  Aligned_cols=129  Identities=21%  Similarity=0.220  Sum_probs=95.0

Q ss_pred             EEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCC
Q 027116           77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL  156 (228)
Q Consensus        77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  156 (228)
                      .+++++++++...     ...   ..++++|++++|.+++..+...   +..+++|++|+|++|.+++..|..+..+++|
T Consensus        12 ~l~~s~~~l~~ip-----~~~---~~~l~~L~l~~n~i~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A           12 TVDCTGRGLKEIP-----RDI---PLHTTELLLNDNELGRISSDGL---FGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             EEECTTSCCSSCC-----SCC---CTTCSEEECCSCCCCSBCCSCS---GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             EEEcCCCCcCcCc-----cCC---CCCCCEEECCCCcCCccCCccc---cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence            4666677664322     211   2278888888888877665321   6678888888888888887777888888888


Q ss_pred             CEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116          157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       157 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      ++|++++|++++ ++...+..+++|++|++++|++++..|. .+..+++|++|++++|+++.
T Consensus        81 ~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           81 QELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred             CEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC
Confidence            888888888874 4443677888888888888888885555 78888888888888888763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=1.4e-18  Score=154.03  Aligned_cols=139  Identities=19%  Similarity=0.212  Sum_probs=118.3

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.++++++.+..     +++..+..+++|++|++++|.+++.++..    |..+++|++|+|++|.+++..|..|+.
T Consensus        51 ~~l~~l~l~~~~l~~-----lp~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  121 (597)
T 3oja_B           51 NNQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN  121 (597)
T ss_dssp             CCCSEEEESSCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCceEEEeeCCCCCC-----cCHHHHccCCCCcEEECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence            346778888887643     45566788999999999999999887765    899999999999999999888888899


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      +++|++|++++|.++ .+|...+..+++|++|++++|.+++..|. .|..+++|++|++++|.++.++..
T Consensus       122 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~  189 (597)
T 3oja_B          122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLS  189 (597)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCCGG
T ss_pred             CCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcChh
Confidence            999999999999998 67775678999999999999999984444 899999999999999999887643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.77  E-value=1.2e-18  Score=158.61  Aligned_cols=91  Identities=24%  Similarity=0.412  Sum_probs=78.6

Q ss_pred             cCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCC
Q 027116          126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRK  205 (228)
Q Consensus       126 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~  205 (228)
                      +..+++|+.|++++|++++.+|..++.+++|++|+|++|.++|.+|. .++.+++|+.|||++|++++.+|. .+..+++
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~  705 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQ-AMSALTM  705 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECCCG-GGGGCCC
T ss_pred             hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcCCh-HHhCCCC
Confidence            34467788889999998888888888899999999999999888887 888899999999999999988888 8888899


Q ss_pred             CcEEECCCCcCCc
Q 027116          206 LNTLHLGGTEIAM  218 (228)
Q Consensus       206 L~~L~L~~N~i~~  218 (228)
                      |++|++++|+++.
T Consensus       706 L~~L~ls~N~l~g  718 (768)
T 3rgz_A          706 LTEIDLSNNNLSG  718 (768)
T ss_dssp             CSEEECCSSEEEE
T ss_pred             CCEEECcCCcccc
Confidence            9999999998864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.1e-17  Score=128.98  Aligned_cols=135  Identities=21%  Similarity=0.214  Sum_probs=114.7

Q ss_pred             EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116           76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS  155 (228)
Q Consensus        76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  155 (228)
                      +.++.+++++.....        .-.++|++|++++|.+++..+..    +..+++|++|++++|++++..+..+..+++
T Consensus        10 ~~v~c~~~~l~~~p~--------~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT--------GIPAQTTYLDLETNSLKSLPNGV----FDELTSLTQLYLGGNKLQSLPNGVFNKLTS   77 (208)
T ss_dssp             TEEECCSSCCSSCCS--------CCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEecCCCccCCCC--------CCCCCCcEEEcCCCccCcCChhh----hcccccCcEEECCCCccCccChhhcCCCCC
Confidence            467888887754221        22468999999999999877665    789999999999999999776667899999


Q ss_pred             CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      |++|++++|.++ .++...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++.++...+
T Consensus        78 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  144 (208)
T 2o6s_A           78 LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVF  144 (208)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence            999999999998 5666568999999999999999998 665478999999999999999999887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=3.7e-18  Score=139.02  Aligned_cols=140  Identities=22%  Similarity=0.266  Sum_probs=92.2

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-ccccccCC
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSLGG  152 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~  152 (228)
                      .++.|++++|.+...+.    ...+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++ ..|..+..
T Consensus       102 ~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~  173 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSE----FSVFLSLRNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAGNSFQENFLPDIFTE  173 (306)
T ss_dssp             TCCEEECTTSEEESSTT----TTTTTTCTTCCEEECTTSCCEECSTTT----TTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             CCCEEECCCCccccccc----chhhhhccCCCEEECCCCcCCccchhh----cccCcCCCEEECCCCccccccchhHHhh
Confidence            44455555554432111    134566677777777777776655554    6677777777777777765 46667777


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK  223 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~  223 (228)
                      +++|++|++++|.+++..|. .+..+++|+.|++++|.+++ ++...+..+++|++|++++|+++.++...
T Consensus       174 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             CcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence            77777788877777743333 67777778888888887777 44336777777888888888777665543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=2e-18  Score=148.86  Aligned_cols=136  Identities=27%  Similarity=0.345  Sum_probs=72.3

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.|++++|.+...     .+..|..+++|++|++++|.+++..+..    |.++++|++|+|++|.++...+..|..
T Consensus        32 ~~l~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  102 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL-----NQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRTLGLRSNRLKLIPLGVFTG  102 (477)
T ss_dssp             TTCSEEECCSSCCCEE-----CTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred             CCCcEEECCCCccceE-----CHhHccCCCCCCEEECCCCccCEeChhh----hhCCccCCEEECCCCcCCccCcccccC
Confidence            4677778887777542     2344566666666666666666655544    555666666666666655444444555


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i  219 (228)
                      +++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..+. .|..+++|++|++++|+++.+
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCccc
Confidence            55555555555555532222 444455555555555544442222 444444444444444444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=5.7e-18  Score=144.96  Aligned_cols=137  Identities=25%  Similarity=0.284  Sum_probs=114.2

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.|++++|.+..     +.+..+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..|..+..
T Consensus       275 ~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~  345 (455)
T 3v47_A          275 SGVKTCDLSKSKIFA-----LLKSVFSHFTDLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSIDSRMFEN  345 (455)
T ss_dssp             SCCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred             cCceEEEecCccccc-----cchhhcccCCCCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcChhHhcC
Confidence            467788888887743     33456788999999999999998877765    888999999999999998887888999


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      +++|++|++++|.+++..|. .+..+++|++|++++|++++ +|...+..+++|++|++++|+++.-.
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cccCCEEECCCCcccccChh-hccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccCC
Confidence            99999999999999854454 88899999999999999998 66647788999999999999987643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.77  E-value=1.6e-17  Score=124.87  Aligned_cols=112  Identities=22%  Similarity=0.253  Sum_probs=93.5

Q ss_pred             CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116          101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN  180 (228)
Q Consensus       101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~  180 (228)
                      .++|++|++++|++++.++..    +..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~  101 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQ  101 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             CCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcc
Confidence            368899999999998776654    788899999999999998766667788999999999999998 466546788899


Q ss_pred             CCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116          181 LEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       181 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      |+.|++++|.+++ +|...+..+++|++|++++|+++.
T Consensus       102 L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          102 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeec
Confidence            9999999999987 666467888999999999998865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.7e-18  Score=131.40  Aligned_cols=110  Identities=20%  Similarity=0.314  Sum_probs=58.1

Q ss_pred             ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCcc-ccCccChhhhc
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNR-LNGSVDIKELD  176 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~  176 (228)
                      +..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+|  .+.
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~  156 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLK  156 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGG
T ss_pred             hhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhc
Confidence            445555555555555555433333    5555555555555555555455555555555555555555 43 343  455


Q ss_pred             CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      .+++|+.|++++|.+++ ++  .+..+++|++|++++|+|.
T Consensus       157 ~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          157 TLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC---
T ss_pred             CCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCcccC
Confidence            55555555555555555 32  3445555555555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.76  E-value=5.5e-18  Score=148.77  Aligned_cols=141  Identities=25%  Similarity=0.299  Sum_probs=117.7

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ...++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    |.++++|++|++++|.+++..|..|.
T Consensus        27 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS   97 (570)
T ss_dssp             CSSCCEEECCSCCCCE-----ECTTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             cccccEEEccCCccCc-----cChhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhc
Confidence            4578899999999854     33456888999999999999998877765    88899999999999999877778899


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC-CCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN-PVIPKDYRGLRKLNTLHLGGTEIAMIDGSK  223 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~  223 (228)
                      .+++|++|++++|.++ .++...++.+++|++|++++|.+++ .+|. .+.++++|++|++++|+++.++...
T Consensus        98 ~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~  168 (570)
T 2z63_A           98 GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTD  168 (570)
T ss_dssp             TCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEECGGG
T ss_pred             Cccccccccccccccc-cCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceecHHH
Confidence            9999999999999998 5665468889999999999999887 3577 8888999999999999988876543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=4.7e-18  Score=136.53  Aligned_cols=112  Identities=26%  Similarity=0.307  Sum_probs=84.8

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+.
T Consensus        51 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~  121 (276)
T 2z62_A           51 FPELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIG  121 (276)
T ss_dssp             CTTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred             ccCCcEEECCCCcCCc-----cCHHHccCCcCCCEEECCCCccCccChhh----hcCCccccEEECCCCCccccCchhcc
Confidence            4578888888888753     33456778888888888888888776655    77788888888888888766665677


Q ss_pred             CCCCCCEEeccCccccC-ccChhhhcCCCCCCEEEcccCCCCC
Q 027116          152 GLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      .+++|++|++++|.+++ .+|. .+..+++|+.|++++|++++
T Consensus       122 ~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          122 HLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCE
T ss_pred             cCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCc
Confidence            88888888888888864 2455 77778888888888888776

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=3.4e-18  Score=130.88  Aligned_cols=131  Identities=19%  Similarity=0.261  Sum_probs=114.4

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      .+++.|++++|.+...     +  .+..+++|++|++++|.++....      +..+++|++|++++|.+++..+..+..
T Consensus        44 ~~L~~L~l~~n~i~~l-----~--~l~~l~~L~~L~l~~n~~~~~~~------l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           44 NSLTYITLANINVTDL-----T--GIEYAHNIKDLTINNIHATNYNP------ISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HTCCEEEEESSCCSCC-----T--TGGGCTTCSEEEEESCCCSCCGG------GTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             CCccEEeccCCCccCh-----H--HHhcCCCCCEEEccCCCCCcchh------hhcCCCCCEEEeECCccCcccChhhcC
Confidence            4688999999998532     2  37889999999999998766432      889999999999999999888889999


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCC-CCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA-INNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      +++|++|++++|.+++..+. .+..+++|++|++++|. +++ ++  .+..+++|++|++++|+|+.++
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~-~~--~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD-IM--PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCC-CG--GGGGCSSCCEEECTTBCCCCCT
T ss_pred             CCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccc-cH--hhcCCCCCCEEECCCCCCcChH
Confidence            99999999999999865665 89999999999999998 776 54  6889999999999999999876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=1e-17  Score=127.92  Aligned_cols=126  Identities=21%  Similarity=0.244  Sum_probs=101.5

Q ss_pred             EEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCC
Q 027116           77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL  156 (228)
Q Consensus        77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  156 (228)
                      .++++++++...+     ...   .++|++|++++|.++..+ ..    +..+++|++|+|++|.+++..+..|..+++|
T Consensus        14 ~l~~~~~~l~~ip-----~~~---~~~l~~L~L~~n~i~~ip-~~----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           14 VVRCSNKGLKVLP-----KGI---PRDVTELYLDGNQFTLVP-KE----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             EEECTTSCCSSCC-----SCC---CTTCCEEECCSSCCCSCC-GG----GGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             EEEcCCCCCCcCC-----CCC---CCCCCEEECCCCcCchhH-HH----hhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            4677777775432     221   257899999999998644 33    8889999999999999998777789999999


Q ss_pred             CEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       157 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      ++|+|++|.++ .++...+..+++|+.|+|++|.++. ++...|..+++|++|++++|++.
T Consensus        81 ~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           81 LTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence            99999999998 4665578899999999999999997 66657888999999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=4.5e-19  Score=145.29  Aligned_cols=133  Identities=19%  Similarity=0.293  Sum_probs=75.0

Q ss_pred             CcEEEEEcCC-CCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           73 GRVIKLDLAQ-IRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        73 ~~v~~L~l~~-n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..++.|++++ |.+..  .   .+..+..+++|++|++++|.+++..|..    +..+++|++|++++|.+++.+|..+.
T Consensus        76 ~~L~~L~L~~~n~l~~--~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVG--P---IPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             TTCSEEEEEEETTEES--C---CCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CCCCeeeCCCCCcccc--c---CChhHhcCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHh
Confidence            4677788874 66632  1   1334566666666666666666555544    55566666666666666655565666


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCC-CCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLS-NLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      .+++|++|++++|.+++.+|. .+..++ +|+.|++++|.+++.+|. .+..++ |++|++++|+++
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEE
T ss_pred             cCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCccc
Confidence            666666666666666555555 555554 555555555555543443 343333 444444444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=1.4e-17  Score=147.48  Aligned_cols=116  Identities=19%  Similarity=0.203  Sum_probs=105.4

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL  181 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  181 (228)
                      +++++|+|++|+|++.++..    |.++++|++|+|++|+|++..+..|.++++|++|+|++|+++ .+|...|.++++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCC
Confidence            47999999999999988766    999999999999999999877788999999999999999998 6887689999999


Q ss_pred             CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116          182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK  223 (228)
Q Consensus       182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~  223 (228)
                      ++|++++|++++ ++...|+++++|++|++++|+++.++...
T Consensus       127 ~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  167 (635)
T 4g8a_A          127 QKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE  167 (635)
T ss_dssp             CEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCch
Confidence            999999999998 66657999999999999999998876543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=4.9e-17  Score=133.80  Aligned_cols=149  Identities=20%  Similarity=0.322  Sum_probs=115.7

Q ss_pred             CceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCC
Q 027116           60 CCQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN  130 (228)
Q Consensus        60 ~c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~  130 (228)
                      .|.|..+.|..         ....++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    +..++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~  100 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----IKDGDFKNLKNLHTLILINNKISKISPGA----FAPLV  100 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----eChhhhccCCCCCEEECCCCcCCeeCHHH----hcCCC
Confidence            47888888864         23578999999999854     33456889999999999999999887765    88999


Q ss_pred             CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC--CCChhhhcCCCCCcE
Q 027116          131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN--PVIPKDYRGLRKLNT  208 (228)
Q Consensus       131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~L~~  208 (228)
                      +|++|++++|.++ .+|..+.  ++|++|++++|.++ .++...+..+++|+.|++++|.+..  ..+. .+..+++|++
T Consensus       101 ~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~  175 (330)
T 1xku_A          101 KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSY  175 (330)
T ss_dssp             TCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCE
T ss_pred             CCCEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCE
Confidence            9999999999998 4555443  68888888888887 5665578888888888888888763  3344 6777777777


Q ss_pred             EECCCCcCCcccCC
Q 027116          209 LHLGGTEIAMIDGS  222 (228)
Q Consensus       209 L~L~~N~i~~i~~~  222 (228)
                      |++++|+++.++..
T Consensus       176 L~l~~n~l~~l~~~  189 (330)
T 1xku_A          176 IRIADTNITTIPQG  189 (330)
T ss_dssp             EECCSSCCCSCCSS
T ss_pred             EECCCCccccCCcc
Confidence            77777777776653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=3.7e-19  Score=160.99  Aligned_cols=183  Identities=21%  Similarity=0.166  Sum_probs=115.3

Q ss_pred             CcHHHHHHHHHHHhhCCCCC--CCCCCCCCCCCCCCceeeeEEECCCCCcEEEEEcCCCCccccc---------------
Q 027116           27 CLEQERSALLQIKHFFNGDQ--HLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESA---------------   89 (228)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~--~~~~W~~~~~~~~~c~~~gv~c~~~~~~v~~L~l~~n~l~~~~---------------   89 (228)
                      ....+++++.+++..+.+..  .-..|.  ......+.|.++.+..  .+++.|++.++.+....               
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~  204 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSID  204 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCccccc
Confidence            34557788888887764332  334564  3445556787766643  45555555555443211               


Q ss_pred             -------ccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEecc
Q 027116           90 -------EWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLF  162 (228)
Q Consensus        90 -------~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  162 (228)
                             ...+.+..+..++.|+.|+|++|.+...++.     +..+++|++|+|++|.++ .+|..+..+++|++|+|+
T Consensus       205 ~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls  278 (727)
T 4b8c_D          205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-----IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS  278 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCSCCCGG-----GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred             CccccccceecChhhhccCCCCcEEECCCCCCCCCChh-----hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence                   0113355678899999999999999865444     568999999999999999 788899999999999999


Q ss_pred             CccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116          163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK  223 (228)
Q Consensus       163 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~  223 (228)
                      +|.++ .+|. .++.+++|++|+|++|.|+. +|. .|..+++|++|+|++|+|+..++..
T Consensus       279 ~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          279 HNRLT-SLPA-ELGSCFQLKYFYFFDNMVTT-LPW-EFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             TSCCS-SCCS-SGGGGTTCSEEECCSSCCCC-CCS-STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCcCC-ccCh-hhcCCCCCCEEECCCCCCCc-cCh-hhhcCCCccEEeCCCCccCCCChHH
Confidence            99998 7888 89999999999999999986 898 7999999999999999999765443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.75  E-value=9.5e-18  Score=148.51  Aligned_cols=139  Identities=22%  Similarity=0.208  Sum_probs=104.7

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ...++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    |.++++|++|++++|.+++..|..+.
T Consensus        32 ~~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~  102 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPT-----IQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETALS  102 (606)
T ss_dssp             CTTCCEEECTTCCCSE-----ECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred             CCcCcEEEccCCccCc-----CChhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhhc
Confidence            4578999999999854     34566788888999999998888877765    78888888888888888877777888


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+++|++|++++|.++ .++...+..+++|++|++++|.+++ ++...+..+++|++|++++|+++.++.
T Consensus       103 ~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A          103 GPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             SCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             ccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccCh
Confidence            8888888888888887 3433367777888888888888776 321134447777777777777776544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=6.1e-18  Score=155.42  Aligned_cols=153  Identities=22%  Similarity=0.268  Sum_probs=124.8

Q ss_pred             ceeeeEEECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccccc-CcccccccCCCCCCcEEECCC
Q 027116           61 CQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCV-ENKGLDRLSRLNNLKFLHLDF  139 (228)
Q Consensus        61 c~~~gv~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~l~~l~~L~~L~Ls~  139 (228)
                      |.|..|.+  ...+++.||+++|.+..     +.+..|..+++|++|++++|...+.+ +..    |.++++|++|+|++
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~-----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~----f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRT-----VTASSFPFLEQLQLLELGSQYTPLTIDKEA----FRNLPNLRILDLGS   82 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCE-----ECSSSCSSCCSCSEEEECTTCCCCEECTTT----TSSCTTCCEEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCc-----cChhHCcccccCeEEeCCCCCCccccCHHH----hcCCCCCCEEECCC
Confidence            45666665  46789999999999854     34567899999999999999655444 444    88999999999999


Q ss_pred             CccCcccccccCCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116          140 NWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       140 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      |.+++..|..|.++++|++|++++|.+++.+|. ..+..+++|++|++++|.+++..+...|+++++|++|++++|+++.
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            999988899999999999999999999865654 1388999999999999999885443378999999999999999987


Q ss_pred             ccCCcc
Q 027116          219 IDGSKV  224 (228)
Q Consensus       219 i~~~~~  224 (228)
                      +....+
T Consensus       163 ~~~~~l  168 (844)
T 3j0a_A          163 VCEHEL  168 (844)
T ss_dssp             CCSGGG
T ss_pred             eCHHHc
Confidence            655443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.74  E-value=1.4e-17  Score=143.51  Aligned_cols=142  Identities=20%  Similarity=0.194  Sum_probs=118.7

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+..     +.+..|..+++|++|++++|.++..++..    |.++++|++|++++|.+++..+..+.
T Consensus        55 l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~  125 (477)
T 2id5_A           55 FPHLEELELNENIVSA-----VEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQ  125 (477)
T ss_dssp             CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CCCCCEEECCCCccCE-----eChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcc
Confidence            4678999999998854     33566888999999999999998877655    78899999999999999888888889


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      .+++|++|++++|.+++ ++...+..+++|+.|++++|.+++ ++...+..+++|+.|++++|.++.++...|
T Consensus       126 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~  196 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSF  196 (477)
T ss_dssp             TCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTTCS
T ss_pred             ccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChhhc
Confidence            99999999999999984 444478889999999999999988 666578888999999999998888776544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.74  E-value=1.9e-17  Score=141.50  Aligned_cols=140  Identities=24%  Similarity=0.314  Sum_probs=87.3

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccc--
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS--  149 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--  149 (228)
                      ..+++.|++++|.+..     +.+..|..+++|++|++++|+++...+..    |..+++|++|++++|.++...+..  
T Consensus        87 l~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~  157 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRT-----IEIGAFNGLANLNTLELFDNRLTTIPNGA----FVYLSKLKELWLRNNPIESIPSYAFN  157 (440)
T ss_dssp             CSSCCEEECCSSCCCE-----ECGGGGTTCSSCCEEECCSSCCSSCCTTT----SCSCSSCCEEECCSCCCCEECTTTTT
T ss_pred             CCCCCEEECCCCcCCc-----cChhhccCCccCCEEECCCCcCCeeCHhH----hhccccCceeeCCCCcccccCHHHhh
Confidence            3567888888887753     23345666777777777777776655544    566666666666666665443333  


Q ss_pred             -----------------------cCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC
Q 027116          150 -----------------------LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL  206 (228)
Q Consensus       150 -----------------------~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L  206 (228)
                                             +..+++|++|++++|.++ .+|  .+..+++|+.|++++|.+++..+. .|.++++|
T Consensus       158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L  233 (440)
T 3zyj_A          158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHLSAIRPG-SFQGLMHL  233 (440)
T ss_dssp             TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCCCEECTT-TTTTCTTC
T ss_pred             hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc--ccCCCcccCEEECCCCccCccChh-hhccCccC
Confidence                                   444555555555555555 444  355566666666666666663333 66777777


Q ss_pred             cEEECCCCcCCcccCCcc
Q 027116          207 NTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       207 ~~L~L~~N~i~~i~~~~~  224 (228)
                      ++|++++|+|+.++...|
T Consensus       234 ~~L~L~~n~l~~~~~~~~  251 (440)
T 3zyj_A          234 QKLWMIQSQIQVIERNAF  251 (440)
T ss_dssp             CEEECTTCCCCEECTTSS
T ss_pred             CEEECCCCceeEEChhhh
Confidence            777777777777666544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=6.8e-18  Score=151.41  Aligned_cols=139  Identities=24%  Similarity=0.311  Sum_probs=83.6

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    +.++++|++|++++|.++...+..|.
T Consensus        24 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~   94 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRR-----LPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFA   94 (680)
T ss_dssp             CTTCSEEECCSSCCCC-----CCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCcEEECCCCCCCC-----cCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhhc
Confidence            3567888888887754     23344666677777777777766655544    55566666666666666644434566


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+++|++|++++|.++ .+++..++.+++|++|++++|.+++..+. .+..+++|++|++++|+++.++.
T Consensus        95 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             TCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCH
T ss_pred             cCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCH
Confidence            6666666666666665 34433556666666666666666653333 55555666666666665555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.74  E-value=2.2e-17  Score=134.43  Aligned_cols=136  Identities=25%  Similarity=0.325  Sum_probs=118.1

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccc-ccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAG-CVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL  150 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  150 (228)
                      ..+++.|++++|.+..     ..+..+..+++|++|++++|.+++ ..+..    +..+++|++|++++|.+++..|..+
T Consensus       125 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~  195 (306)
T 2z66_A          125 LRNLIYLDISHTHTRV-----AFNGIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAF  195 (306)
T ss_dssp             CTTCCEEECTTSCCEE-----CSTTTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ccCCCEEECCCCcCCc-----cchhhcccCcCCCEEECCCCccccccchhH----HhhCcCCCEEECCCCCcCCcCHHHh
Confidence            4578999999999843     334568889999999999999987 44544    8899999999999999998888899


Q ss_pred             CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCC-CCcEEECCCCcCCc
Q 027116          151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLR-KLNTLHLGGTEIAM  218 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~-~L~~L~L~~N~i~~  218 (228)
                      ..+++|++|++++|.+++ ++...+..+++|+.|++++|.+++..+. .+..++ +|++|++++|+++.
T Consensus       196 ~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          196 NSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSS-SCCCCCTTCCEEECTTCCEEC
T ss_pred             cCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHH-HHHhhhccCCEEEccCCCeec
Confidence            999999999999999984 5554789999999999999999996666 888884 99999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=4.2e-17  Score=134.19  Aligned_cols=119  Identities=24%  Similarity=0.313  Sum_probs=94.0

Q ss_pred             ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116           96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL  175 (228)
Q Consensus        96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  175 (228)
                      ..+..+++|++|++++|.++..+..     +  .++|++|++++|.+++..|..+..+++|++|++++|.+++ ++...+
T Consensus       165 ~~~~~l~~L~~L~l~~n~l~~l~~~-----~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~  236 (330)
T 1xku_A          165 GAFQGMKKLSYIRIADTNITTIPQG-----L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSL  236 (330)
T ss_dssp             TGGGGCTTCCEEECCSSCCCSCCSS-----C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTG
T ss_pred             hhccCCCCcCEEECCCCccccCCcc-----c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhc
Confidence            3455666666666666666653332     2  2678888888888887777888899999999999999984 444478


Q ss_pred             cCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          176 DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       176 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      ..+++|+.|++++|.++. +|. .+..+++|++|++++|+|+.++...|
T Consensus       237 ~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLVK-VPG-GLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             GGSTTCCEEECCSSCCSS-CCT-TTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cCCCCCCEEECCCCcCcc-CCh-hhccCCCcCEEECCCCcCCccChhhc
Confidence            888999999999999986 888 78889999999999999999887766

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=2.3e-17  Score=125.79  Aligned_cols=127  Identities=22%  Similarity=0.309  Sum_probs=108.6

Q ss_pred             ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116           61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN  131 (228)
Q Consensus        61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~  131 (228)
                      |.|..+.|..         ....++.|++++|.+.....    ...|..+++|++|++++|++++..+..    |..+++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~   79 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS----DGLFGRLPHLVKLELKRNQLTGIEPNA----FEGASH   79 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTTT----TTTCTT
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCC----ccccccCCCCCEEECCCCCCCCcCHhH----cCCccc
Confidence            7788888864         23478999999999854221    235789999999999999999987766    899999


Q ss_pred             CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCC
Q 027116          132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVI  196 (228)
Q Consensus       132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p  196 (228)
                      |++|+|++|++++..+..+..+++|++|++++|++++..|. .+..+++|++|++++|.+++..+
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999999988888899999999999999999965565 89999999999999999987443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=2.9e-17  Score=137.09  Aligned_cols=141  Identities=23%  Similarity=0.209  Sum_probs=119.1

Q ss_pred             eEEECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccC-CCCCCcEEECCCCccC
Q 027116           65 RVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLS-RLNNLKFLHLDFNWFN  143 (228)
Q Consensus        65 gv~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~  143 (228)
                      ...|..     ..++++++++....     ...   ...++.|++++|++++..+..    +. .+++|++|+|++|.++
T Consensus        15 ~C~C~~-----~~l~c~~~~l~~iP-----~~~---~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~   77 (361)
T 2xot_A           15 NCLCAS-----NILSCSKQQLPNVP-----QSL---PSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLN   77 (361)
T ss_dssp             TCEEET-----TEEECCSSCCSSCC-----SSC---CTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCC
T ss_pred             CCEECC-----CEEEeCCCCcCccC-----ccC---CCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCC
Confidence            456642     36899999986532     221   246899999999999987765    66 8999999999999999


Q ss_pred             cccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116          144 NSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK  223 (228)
Q Consensus       144 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~  223 (228)
                      +..+..|..+++|++|+|++|.++ .++...+..+++|+.|+|++|.|++..+. .|.++++|++|+|++|+|+.++...
T Consensus        78 ~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           78 FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             ccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCCeeCHHH
Confidence            887788999999999999999998 57665799999999999999999984445 8999999999999999999998765


Q ss_pred             c
Q 027116          224 V  224 (228)
Q Consensus       224 ~  224 (228)
                      |
T Consensus       156 ~  156 (361)
T 2xot_A          156 I  156 (361)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=1.8e-17  Score=146.80  Aligned_cols=121  Identities=23%  Similarity=0.254  Sum_probs=97.9

Q ss_pred             ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-ccccccCCCCCCCEEeccCccccCccChhh
Q 027116           96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-SIFSSLGGLSSLKHLSLFHNRLNGSVDIKE  174 (228)
Q Consensus        96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  174 (228)
                      ..+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|. .
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~  492 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTKIDFDGI----FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG-V  492 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECCTTT----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-T
T ss_pred             hhhhccccCCEEECcCCCCCccchhh----hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-h
Confidence            35667777777777777777766655    7788888888888888886 4677888889999999999988854444 7


Q ss_pred             hcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          175 LDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       175 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      +..+++|+.|++++|++++..|. .+..+++|++|++++|+|+.+|..
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCCCCEESC
T ss_pred             hcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcCcccCHh
Confidence            88889999999999999885566 888899999999999999988876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.73  E-value=1.3e-17  Score=137.53  Aligned_cols=134  Identities=20%  Similarity=0.214  Sum_probs=72.6

Q ss_pred             CcEEEEEcCCCCcccccccccC------cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccc
Q 027116           73 GRVIKLDLAQIRKWESAEWYMN------ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI  146 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  146 (228)
                      .+++.|++++|++.  +.....      ...+..+++|++|++++|.++. .|..    +..+++|++|++++|.+++ +
T Consensus       150 ~~L~~L~L~~n~~~--~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~----l~~l~~L~~L~L~~N~l~~-l  221 (328)
T 4fcg_A          150 NRLRELSIRACPEL--TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPAS----IANLQNLKSLKIRNSPLSA-L  221 (328)
T ss_dssp             TTCCEEEEEEETTC--CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGG----GGGCTTCCEEEEESSCCCC-C
T ss_pred             cCCCEEECCCCCCc--cccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHh----hcCCCCCCEEEccCCCCCc-C
Confidence            46777777776542  211000      0112345666666666666653 2222    5555666666666666653 3


Q ss_pred             ccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116          147 FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       147 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i  216 (228)
                      |..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|++
T Consensus       222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTT
T ss_pred             chhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCc
Confidence            34455566666666666555555554 555566666666666555555555 555566666666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=4.3e-17  Score=139.78  Aligned_cols=73  Identities=19%  Similarity=0.258  Sum_probs=41.5

Q ss_pred             cCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       150 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      +..+++|++|++++|.+++ +++..+..+++|+.|++++|.+++..+. .|..+++|++|+|++|+|+.++...|
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             ccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCCcCCccChHHh
Confidence            3444455555555555542 3233556666666666666666653333 56666677777777777766665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=8.4e-18  Score=122.87  Aligned_cols=129  Identities=26%  Similarity=0.320  Sum_probs=102.9

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      .+++.|++++|.+.. +.  + +..+..+++|++|++++|.+++. + .    +..+++|++|++++|.+++.+|..+..
T Consensus        17 ~~l~~L~l~~n~l~~-~~--~-~~~~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNE-GK--L-EGLTDEFEELEFLSTINVGLTSI-A-N----LPKLNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             GGCSEEECTTCBCBT-TB--C-CSCCTTCTTCCEEECTTSCCCCC-T-T----CCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             ccCeEEEccCCcCCh-hH--H-HHHHhhcCCCcEEECcCCCCCCc-h-h----hhcCCCCCEEECCCCcccchHHHHhhh
Confidence            568889999998841 11  2 33568889999999999999876 2 2    888999999999999998777877778


Q ss_pred             CCCCCEEeccCccccCccC-hhhhcCCCCCCEEEcccCCCCCCCCh---hhhcCCCCCcEEECCC
Q 027116          153 LSSLKHLSLFHNRLNGSVD-IKELDSLSNLEELDMSDNAINNPVIP---KDYRGLRKLNTLHLGG  213 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p-~~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~L~~  213 (228)
                      +++|++|++++|.+++ ++ ...+..+++|++|++++|.+++ ++.   ..+..+++|++|++++
T Consensus        87 l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence            8999999999999984 43 1378889999999999999988 443   3688889999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=5.5e-17  Score=121.92  Aligned_cols=127  Identities=24%  Similarity=0.328  Sum_probs=108.9

Q ss_pred             CceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCC
Q 027116           60 CCQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN  130 (228)
Q Consensus        60 ~c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~  130 (228)
                      .|.|.++.|..         ....++.|++++|++..     +++..+..+++|++|++++|.+++.++..    +..++
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~   76 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKLT   76 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE-----eCHHHhcCcccccEEECCCCcceEeChhH----ccCCC
Confidence            37899999864         23578999999999854     44556789999999999999999877765    78999


Q ss_pred             CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCC
Q 027116          131 NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVI  196 (228)
Q Consensus       131 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p  196 (228)
                      +|++|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+.+..+
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999999999877777899999999999999998 6776567889999999999999998443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.72  E-value=9.2e-18  Score=137.33  Aligned_cols=140  Identities=17%  Similarity=0.143  Sum_probs=79.7

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCC-----CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc--
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPF-----QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS--  145 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--  145 (228)
                      ..++.|++++|.+...      +..+..+     ++|++|++++|++++..+..    +..+++|++|++++|++.+.  
T Consensus       121 ~~L~~L~Ls~N~l~~~------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ----VRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             CCCSEEEEESCBCSSS------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT----CCCCSSCCEEECCSCTTCHHHH
T ss_pred             CCccEEEccCCCCcch------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH----hccCCCCCEEECCCCCcCcchH
Confidence            4556666666665332      1222333     56666666666666555444    66666777777777666543  


Q ss_pred             ccccc--CCCCCCCEEeccCccccC--ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          146 IFSSL--GGLSSLKHLSLFHNRLNG--SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       146 ~~~~~--~~l~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+..+  ..+++|++|++++|.+++  .++...+..+++|+.|++++|.+++..|...+..+++|++|++++|+|+++|.
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~  270 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK  270 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh
Confidence            22233  566666667776666652  12222344566677777777776664433245556666777777776666655


Q ss_pred             C
Q 027116          222 S  222 (228)
Q Consensus       222 ~  222 (228)
                      .
T Consensus       271 ~  271 (312)
T 1wwl_A          271 G  271 (312)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.72  E-value=6.1e-17  Score=133.39  Aligned_cols=146  Identities=28%  Similarity=0.358  Sum_probs=113.1

Q ss_pred             ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116           61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN  131 (228)
Q Consensus        61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~  131 (228)
                      |.|..+.|..         ....++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    +..+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~  103 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----LRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRK  103 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTT
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----cCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCC
Confidence            7898888864         23478999999999854     34456889999999999999999877765    889999


Q ss_pred             CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC--CCChhhhcCCCCCcEE
Q 027116          132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN--PVIPKDYRGLRKLNTL  209 (228)
Q Consensus       132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~L~~L  209 (228)
                      |++|++++|.++ .+|..+.  ++|++|++++|.++ .++...+..+++|+.|++++|.++.  ..+. .+..+ +|++|
T Consensus       104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L  177 (332)
T 2ft3_A          104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYL  177 (332)
T ss_dssp             CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCC
T ss_pred             CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCC-ccCEE
Confidence            999999999998 5555544  78999999999998 5666578899999999999998863  2333 55555 66666


Q ss_pred             ECCCCcCCcccC
Q 027116          210 HLGGTEIAMIDG  221 (228)
Q Consensus       210 ~L~~N~i~~i~~  221 (228)
                      ++++|+++.+|.
T Consensus       178 ~l~~n~l~~l~~  189 (332)
T 2ft3_A          178 RISEAKLTGIPK  189 (332)
T ss_dssp             BCCSSBCSSCCS
T ss_pred             ECcCCCCCccCc
Confidence            666666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=1.1e-17  Score=131.65  Aligned_cols=139  Identities=14%  Similarity=0.251  Sum_probs=78.1

Q ss_pred             CcEEEEEcCCCC-cccccccccCcccccCCCCCCEEeCCC-CCcccccCcccccccCCCCCCc-----------------
Q 027116           73 GRVIKLDLAQIR-KWESAEWYMNASLFTPFQQLESLDLTW-NSIAGCVENKGLDRLSRLNNLK-----------------  133 (228)
Q Consensus        73 ~~v~~L~l~~n~-l~~~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~l~~l~~L~-----------------  133 (228)
                      .+++.|++++|. ++.     +.+..|..+++|++|++++ |.+++..+..    |..+++|+                 
T Consensus        55 ~~L~~L~l~~n~~l~~-----i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l~~L~~L~l~~n~l~~lp~~~~  125 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQ-----LESHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKELPLLKFLGIFNTGLKMFPDLTK  125 (239)
T ss_dssp             TTCCEEEEECCSSCCE-----ECTTTEESCTTCCEEEEEEETTCCEECTTS----EECCTTCCEEEEEEECCCSCCCCTT
T ss_pred             CCCcEEeCCCCCCcce-----eCHhHcCCCcCCcEEECCCCCCeeEcCHHH----hCCCCCCCEEeCCCCCCcccccccc
Confidence            456666666665 532     2233455556666666665 5555544333    44444444                 


Q ss_pred             --------EEECCCC-ccCcccccccCCCCCCC-EEeccCccccCccChhhhcCCCCCCEEEcccCC-CCCCCChhhhcC
Q 027116          134 --------FLHLDFN-WFNNSIFSSLGGLSSLK-HLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA-INNPVIPKDYRG  202 (228)
Q Consensus       134 --------~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~  202 (228)
                              +|++++| .+++..+..|..+++|+ +|++++|+++ .+|...+.. ++|+.|++++|+ +++ ++...|..
T Consensus       126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~-i~~~~~~~  202 (239)
T 2xwt_C          126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTV-IDKDAFGG  202 (239)
T ss_dssp             CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCE-ECTTTTTT
T ss_pred             ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCccc-CCHHHhhc
Confidence                    5555555 55544444455666666 6666666665 555533333 566666666663 665 44435666


Q ss_pred             C-CCCcEEECCCCcCCcccCCc
Q 027116          203 L-RKLNTLHLGGTEIAMIDGSK  223 (228)
Q Consensus       203 l-~~L~~L~L~~N~i~~i~~~~  223 (228)
                      + ++|++|++++|+++.+|...
T Consensus       203 l~~~L~~L~l~~N~l~~l~~~~  224 (239)
T 2xwt_C          203 VYSGPSLLDVSQTSVTALPSKG  224 (239)
T ss_dssp             CSBCCSEEECTTCCCCCCCCTT
T ss_pred             cccCCcEEECCCCccccCChhH
Confidence            6 67777777777777666553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.71  E-value=7.4e-17  Score=132.88  Aligned_cols=123  Identities=21%  Similarity=0.306  Sum_probs=91.7

Q ss_pred             cccccCCCCCCEEeCCCCCccc--ccCcccccccCC--------------------CCCCcEEECCCCccCcccccccCC
Q 027116           95 ASLFTPFQQLESLDLTWNSIAG--CVENKGLDRLSR--------------------LNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        95 ~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~l~~--------------------l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      +..+..+++|++|++++|.++.  ..+..    +..                    .++|++|++++|.+++..+..+..
T Consensus       140 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~  215 (332)
T 2ft3_A          140 KGVFSGLRNMNCIEMGGNPLENSGFEPGA----FDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR  215 (332)
T ss_dssp             SGGGSSCSSCCEEECCSCCCBGGGSCTTS----SCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT
T ss_pred             HhHhCCCccCCEEECCCCccccCCCCccc----ccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcC
Confidence            3446777778888888777753  22221    211                    146777777777777666677888


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      +++|++|++++|.+++ ++...+..+++|+.|++++|+++. +|. .+..+++|++|++++|+|+.++...|
T Consensus       216 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          216 YSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSR-VPA-GLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             CTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCCB-CCT-TGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             CCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCee-cCh-hhhcCccCCEEECCCCCCCccChhHc
Confidence            8889999999998884 444478888899999999999886 887 78888999999999999988887654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.71  E-value=1.9e-17  Score=124.46  Aligned_cols=133  Identities=20%  Similarity=0.145  Sum_probs=109.9

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCC-CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPF-QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL  150 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  150 (228)
                      ...++.|++++|.+...      +. +..+ ++|++|++++|.+++. +.     +..+++|++|++++|.+++..+..+
T Consensus        18 ~~~L~~L~l~~n~l~~i------~~-~~~~~~~L~~L~Ls~N~l~~~-~~-----l~~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI------EN-LGATLDQFDAIDFSDNEIRKL-DG-----FPLLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             TTSCEEEECTTSCCCSC------CC-GGGGTTCCSEEECCSSCCCEE-CC-----CCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             cCCceEEEeeCCCCchh------HH-hhhcCCCCCEEECCCCCCCcc-cc-----cccCCCCCEEECCCCcccccCcchh
Confidence            35789999999998642      12 3444 4999999999999986 32     8999999999999999996554555


Q ss_pred             CCCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCChh---hhcCCCCCcEEECCCCcCCcc
Q 027116          151 GGLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIPK---DYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~~l~~L~~L~L~~N~i~~i  219 (228)
                      ..+++|++|++++|.++ .+|. ..+..+++|+.|++++|.++. +|..   .+..+++|++|++++|.+.+.
T Consensus        85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            88999999999999997 5664 368899999999999999987 6762   388999999999999987653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=9.3e-17  Score=139.75  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=93.0

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc--cCcccccccCCCCCCcEEECCCCccCccccc-
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC--VENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-  148 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-  148 (228)
                      ...++.|++++|.+.+     ..+..+..+++|++|++++|++++.  .+..    +..+++|++|++++|.+++.+|. 
T Consensus       323 l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTD-----TVFENCGHLTELETLILQMNQLKELSKIAEM----TTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             CCCCCEEECCSSCCCT-----TTTTTCCCCSSCCEEECCSSCCCBHHHHHHH----HTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             CCcccEEEeECCccCh-----hhhhhhccCCCCCEEEccCCccCccccchHH----HhhCCCCCEEECCCCcCCcccccc
Confidence            4567778888887743     1234466777788888888877752  2232    66777777888887777764554 


Q ss_pred             ccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          149 SLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       149 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      .+..+++|++|++++|.+++.+|. .+.  ++|+.|++++|+++. +|. .+..+++|++|++++|+|+.+|..
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTIFR-CLP--PRIKVLDLHSNKIKS-IPK-QVVKLEALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGGGG-SCC--TTCCEEECCSSCCCC-CCG-GGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             hhccCccCCEEECcCCCCCcchhh-hhc--ccCCEEECCCCcccc-cch-hhhcCCCCCEEECCCCcCCccCHH
Confidence            366677777777777777655443 222  577777777777775 776 555777778888888877777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.9e-16  Score=120.91  Aligned_cols=122  Identities=25%  Similarity=0.310  Sum_probs=106.3

Q ss_pred             ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116           61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN  131 (228)
Q Consensus        61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~  131 (228)
                      |.|..+.|.+         ....++.|++++|.+..     ++ ..|..+++|++|++++|.+++..+..    |..+++
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~-----ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l~~   79 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-----VP-KELSNYKHLTLIDLSNNRISTLSNQS----FSNMTQ   79 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS-----CC-GGGGGCTTCCEEECCSSCCCCCCTTT----TTTCTT
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch-----hH-HHhhcccCCCEEECCCCcCCEeCHhH----ccCCCC
Confidence            5677777754         23578999999999853     22 46889999999999999999987766    899999


Q ss_pred             CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116          132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      |++|+|++|.+++..+..|..+++|++|+|++|.++ .+|...+..+++|+.|++++|.+..
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence            999999999999888888999999999999999998 6777678999999999999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=5.9e-17  Score=118.34  Aligned_cols=113  Identities=24%  Similarity=0.341  Sum_probs=99.5

Q ss_pred             CCCCCCEEeCCCCCcc-cccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116          100 PFQQLESLDLTWNSIA-GCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL  178 (228)
Q Consensus       100 ~l~~L~~L~ls~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  178 (228)
                      ..++++.|++++|.++ +..+..    +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|. .+..+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l   87 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKC   87 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHC
T ss_pred             CCccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhC
Confidence            3478999999999998 555554    78999999999999999866  7789999999999999999965665 77789


Q ss_pred             CCCCEEEcccCCCCCCCC--hhhhcCCCCCcEEECCCCcCCcccC
Q 027116          179 SNLEELDMSDNAINNPVI--PKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p--~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      ++|++|++++|.+++ ++  . .+..+++|++|++++|+++.++.
T Consensus        88 ~~L~~L~ls~N~i~~-~~~~~-~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           88 PNLTHLNLSGNKIKD-LSTIE-PLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             TTCCEEECTTSCCCS-HHHHG-GGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCCEEECCCCcCCC-hHHHH-HHhhCCCCCEEeCcCCcccchHH
Confidence            999999999999998 44  4 78999999999999999998876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=2.9e-16  Score=132.01  Aligned_cols=42  Identities=17%  Similarity=0.376  Sum_probs=20.4

Q ss_pred             CCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       178 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      +++|+.|++++|.+++..|. .+..+++|++|++++|+++.++
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~  288 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVALN  288 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCEEE
T ss_pred             CCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCcccC
Confidence            34444444444444442233 4555555555555555555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.70  E-value=1.6e-16  Score=140.67  Aligned_cols=143  Identities=24%  Similarity=0.289  Sum_probs=124.5

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    +.++++|++|++++|.+++..+..+.
T Consensus        56 l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~  126 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYW-----IHEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLH  126 (606)
T ss_dssp             CTTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred             CccceEEECCCCccce-----eChhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhc
Confidence            4679999999999854     44567899999999999999999887776    89999999999999999987788899


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc--EEECCCCcCCcccCCccc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN--TLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~--~L~L~~N~i~~i~~~~~~  225 (228)
                      .+++|++|++++|.+++ ++...+..+++|++|++++|.+++ ++...+..+++|+  .|++++|+++.+++..+.
T Consensus       127 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~  200 (606)
T 3t6q_A          127 NQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD  200 (606)
T ss_dssp             TCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred             cCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence            99999999999999984 421156669999999999999998 5444899999999  999999999999887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.70  E-value=9.9e-17  Score=140.75  Aligned_cols=143  Identities=24%  Similarity=0.293  Sum_probs=124.0

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+..     +.+..|..+++|++|++++|.+++.++..    |.++++|++|++++|.+++..+..++
T Consensus        51 l~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~  121 (570)
T 2z63_A           51 FPELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIG  121 (570)
T ss_dssp             CSSCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCT
T ss_pred             CCCceEEECCCCcCCc-----cCcccccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCcccc
Confidence            4679999999999854     44567899999999999999999987766    89999999999999999976666799


Q ss_pred             CCCCCCEEeccCccccC-ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC----cEEECCCCcCCcccCCccc
Q 027116          152 GLSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL----NTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L----~~L~L~~N~i~~i~~~~~~  225 (228)
                      .+++|++|++++|.+++ .+|. .++++++|++|++++|.+++ ++...+..+++|    +.|++++|+++.++...+.
T Consensus       122 ~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~  198 (570)
T 2z63_A          122 HLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK  198 (570)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred             ccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence            99999999999999985 3676 89999999999999999998 444377777777    8999999999999887653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.70  E-value=2.5e-17  Score=136.80  Aligned_cols=139  Identities=19%  Similarity=0.232  Sum_probs=108.3

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc-ccc
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF-SSL  150 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~  150 (228)
                      ..+++.|++++|.+..     +.+..|..+++|++|++++|.+++.++..    +..+++|++|++++|.++...+ ..+
T Consensus        75 l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~  145 (353)
T 2z80_A           75 CVNLQALVLTSNGINT-----IEEDSFSSLGSLEHLDLSYNYLSNLSSSW----FKPLSSLTFLNLLGNPYKTLGETSLF  145 (353)
T ss_dssp             CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCSSCCHHH----HTTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred             CCCCCEEECCCCccCc-----cCHhhcCCCCCCCEEECCCCcCCcCCHhH----hCCCccCCEEECCCCCCcccCchhhh
Confidence            4678999999998854     33456788899999999999998766554    7888999999999999885444 368


Q ss_pred             CCCCCCCEEeccCcc-ccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          151 GGLSSLKHLSLFHNR-LNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      ..+++|++|++++|. ++ .++...+..+++|+.|++++|.+++..|. .+..+++|++|++++|+++.++.
T Consensus       146 ~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~  215 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHLILHMKQHILLLE  215 (353)
T ss_dssp             TTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSCSTTHHH
T ss_pred             ccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHH-HHhccccCCeecCCCCccccchh
Confidence            888999999999884 55 56554788888888899988888885455 77777777777777777766553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=2.6e-16  Score=127.61  Aligned_cols=128  Identities=28%  Similarity=0.383  Sum_probs=91.0

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+....     +  +..+++|++|++++|.+++...      +..+++|++|++++|.+++.  ..+.
T Consensus        67 l~~L~~L~L~~n~l~~~~-----~--l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~n~i~~~--~~l~  131 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIK-----P--LANLKNLGWLFLDENKVKDLSS------LKDLKKLKSLSLEHNGISDI--NGLV  131 (291)
T ss_dssp             CTTCCEEECCSSCCCCCG-----G--GTTCTTCCEEECCSSCCCCGGG------GTTCTTCCEEECTTSCCCCC--GGGG
T ss_pred             CCCCCEEEccCCccCCCc-----c--cccCCCCCEEECCCCcCCCChh------hccCCCCCEEECCCCcCCCC--hhhc
Confidence            356788888888874322     1  6777888888888888776432      67777888888888877753  3567


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      .+++|++|++++|.+++ ++  .+..+++|+.|++++|.+++ ++.  +..+++|++|++++|+|+.++
T Consensus       132 ~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          132 HLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             GCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             CCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCCCCh
Confidence            77778888888887763 43  67777777777777777776 333  667777777777777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=2.8e-16  Score=139.23  Aligned_cols=86  Identities=20%  Similarity=0.202  Sum_probs=40.4

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.|++++|.+..     +.+..|..+++|++|++++|.+++.++..    |..+++|++|+|++|.+++..+..|..
T Consensus        75 ~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~  145 (597)
T 3oja_B           75 RQVELLNLNDLQIEE-----IDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHN  145 (597)
T ss_dssp             CCCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCC-----CChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence            456777777777643     22233445555555555555555444433    344444444444444444322222334


Q ss_pred             CCCCCEEeccCcccc
Q 027116          153 LSSLKHLSLFHNRLN  167 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~  167 (228)
                      +++|++|++++|.++
T Consensus       146 l~~L~~L~Ls~N~l~  160 (597)
T 3oja_B          146 TPKLTTLSMSNNNLE  160 (597)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCCCCEEEeeCCcCC
Confidence            444444444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.69  E-value=2e-16  Score=141.84  Aligned_cols=123  Identities=27%  Similarity=0.364  Sum_probs=87.9

Q ss_pred             cccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc--------cccCCCCCCCEEeccCccc
Q 027116           95 ASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF--------SSLGGLSSLKHLSLFHNRL  166 (228)
Q Consensus        95 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l  166 (228)
                      +..+..+++|++|++++|++++.++..    +..+++|++|++++|.+++..+        ..+..+++|++|++++|++
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l  548 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDDM----LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF  548 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChhh----hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence            344666777777777777777766554    6777777788887777764322        1256777788888888877


Q ss_pred             cCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCc
Q 027116          167 NGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSK  223 (228)
Q Consensus       167 ~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~  223 (228)
                      + .+|...+..+++|+.|++++|++++ +|...|..+++|+.|++++|+++.++...
T Consensus       549 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  603 (680)
T 1ziw_A          549 D-EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKV  603 (680)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred             C-CCCHHHcccccCcceeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence            7 6776567778888888888888876 56546777788888888888877776543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.69  E-value=5e-17  Score=132.93  Aligned_cols=138  Identities=21%  Similarity=0.197  Sum_probs=103.5

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccccc--CcccccccCCCCCCcEEECCCCccCcc--cc-
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCV--ENKGLDRLSRLNNLKFLHLDFNWFNNS--IF-  147 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~-  147 (228)
                      ..++.|++++|++..     +.+..++.+++|++|++++|++.+..  +..  ..+..+++|++|++++|.+++.  .+ 
T Consensus       149 ~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLN-----FSCEQVRVFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             TTCCEEEEESCSCCC-----CCTTTCCCCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             CCCcEEEeeCCCCcc-----chHHHhccCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCCCcCcchHHHHH
Confidence            678999999999854     34456888999999999999876642  111  0037788999999999988732  22 


Q ss_pred             cccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          148 SSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       148 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      ..+..+++|++|++++|.+++..|...+..+++|++|++++|.++. +|. .+.  ++|++|++++|+|+.+|.
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~--~~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPK-GLP--AKLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCS-SCC--SEEEEEECCSSCCCSCCC
T ss_pred             HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhh-hcc--CCceEEECCCCCCCCChh
Confidence            3345778899999999998865543356677889999999998885 777 444  788888998888888754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=1.6e-16  Score=137.66  Aligned_cols=129  Identities=19%  Similarity=0.193  Sum_probs=67.2

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccC-CCCCCcEEECCCCccCcccccccCC
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLS-RLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      .++.|++++|.+..     +.+..+..+++|++|++++|.+++.++..    +. .+++|++|+|++|.+++. | ....
T Consensus       121 ~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~N~l~~~-~-~~~~  189 (487)
T 3oja_A          121 GKKNIYLANNKITM-----LRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDV-K-GQVV  189 (487)
T ss_dssp             SCEEEECCSSCCCS-----GGGBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEE-E-CCCC
T ss_pred             CCCEEECCCCCCCC-----CCchhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCCCccccc-c-cccc
Confidence            34555555555432     11223445555555555555555544433    32 455555555555555543 1 1233


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      +++|++|++++|.++ .+|+ .+..+++|+.|++++|.+++ +|. .+..+++|+.|++++|++.
T Consensus       190 l~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~-~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          190 FAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLVL-IEK-ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTCCEEECCSSCCC-EECG-GGGGGTTCSEEECTTSCCCE-ECT-TCCCCTTCCEEECTTCCBC
T ss_pred             CCCCCEEECCCCCCC-CCCH-hHcCCCCccEEEecCCcCcc-cch-hhccCCCCCEEEcCCCCCc
Confidence            555666666666655 3444 35555566666666666655 555 4555556666666666555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=4.1e-16  Score=127.39  Aligned_cols=109  Identities=32%  Similarity=0.479  Sum_probs=56.1

Q ss_pred             ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS  177 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~  177 (228)
                      +..+++|++|++++|.+++..+      +..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++  .+..
T Consensus       103 ~~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~--~l~~  171 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITDVTP------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLT--PLAN  171 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG--GGTT
T ss_pred             hcCCCCCCEEECCCCCCCCchh------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CCh--hhcC
Confidence            3444444444444444444221      4445555555555555543322  445555555555555554 233  2555


Q ss_pred             CCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       178 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      +++|+.|++++|.+++ ++.  +..+++|++|++++|+++.++
T Consensus       172 l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          172 LSKLTTLKADDNKISD-ISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             CTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             CCCCCEEECCCCccCc-Chh--hcCCCCCCEEEccCCccCccc
Confidence            5566666666666555 332  455666666666666666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.69  E-value=2.2e-16  Score=138.91  Aligned_cols=137  Identities=20%  Similarity=0.228  Sum_probs=95.4

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCccccc--CcccccccCCCCCCcEEECCCCccCccccc-
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCV--ENKGLDRLSRLNNLKFLHLDFNWFNNSIFS-  148 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-  148 (228)
                      ...++.|++++|.+.+     ..+..+..+++|++|++++|++++..  +..    +..+++|++|++++|.+++.+|. 
T Consensus       352 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTD-----SVFQGCSTLKRLQTLILQRNGLKNFFKVALM----TKNMSSLETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             CCCCCEEECCSSCCCT-----TTTTTCCSCSSCCEEECCSSCCCBTTHHHHT----TTTCTTCCEEECTTSCCBSCCSSC
T ss_pred             CCCceEEECCCCcccc-----chhhhhcccCCCCEEECCCCCcCCcccchhh----hcCCCCCCEEECCCCcCCCccChh
Confidence            4567888888888743     12345677788888888888887632  222    67778888888888888764444 


Q ss_pred             ccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          149 SLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       149 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      .+..+++|++|++++|.+++.+|. .+.  ++|+.|++++|+++. +|. .+..+++|++|++++|+|+.+|..
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~~-~l~--~~L~~L~L~~N~l~~-ip~-~~~~l~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVFR-CLP--PKVKVLDLHNNRIMS-IPK-DVTHLQALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGGS-SCC--TTCSEEECCSSCCCC-CCT-TTTSSCCCSEEECCSSCCCCCCTT
T ss_pred             hhcCcccCCEEECCCCCCCcchhh-hhc--CcCCEEECCCCcCcc-cCh-hhcCCCCCCEEECCCCCCCCCCHH
Confidence            466777788888888777654443 222  577788888887775 776 455777888888888888777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=3.9e-16  Score=127.48  Aligned_cols=129  Identities=25%  Similarity=0.395  Sum_probs=96.0

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+....     +  +..+++|++|++++|.+++.. .     +..+++|++|++++|.+++. + .+.
T Consensus        62 l~~L~~L~L~~n~i~~~~-----~--~~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n~l~~~-~-~l~  126 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLA-----P--LKNLTKITELELSGNPLKNVS-A-----IAGLQSIKTLDLTSTQITDV-T-PLA  126 (308)
T ss_dssp             CTTCCEEECCSSCCCCCG-----G--GTTCCSCCEEECCSCCCSCCG-G-----GTTCTTCCEEECTTSCCCCC-G-GGT
T ss_pred             cCCCCEEEccCCcCCCCh-----h--HccCCCCCEEEccCCcCCCch-h-----hcCCCCCCEEECCCCCCCCc-h-hhc
Confidence            356788888888774322     1  677888888888888887643 2     77788888888888888753 3 377


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+++|++|++++|.++ .++  .+..+++|+.|++++|.+++ ++.  +..+++|++|++++|+++.++.
T Consensus       127 ~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          127 GLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             TCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCCEEECCCCccC-cCc--cccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccCcChh
Confidence            8888888888888887 454  37778888888888888877 443  6778888888888888877664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.69  E-value=3.4e-16  Score=137.62  Aligned_cols=134  Identities=22%  Similarity=0.220  Sum_probs=105.8

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      .+++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    |.++++|++|++++|.++ .+|..  .
T Consensus        52 ~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~  119 (562)
T 3a79_B           52 PRTKALSLSQNSISE-----LRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--P  119 (562)
T ss_dssp             TTCCEEECCSSCCCC-----CCGGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred             CCcCEEECCCCCccc-----cChhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--c
Confidence            578899999998854     34456888999999999999998887766    888999999999999998 56655  7


Q ss_pred             CCCCCEEeccCccccC-ccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCC--cEEECCCCcC--CcccCCc
Q 027116          153 LSSLKHLSLFHNRLNG-SVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKL--NTLHLGGTEI--AMIDGSK  223 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L--~~L~L~~N~i--~~i~~~~  223 (228)
                      +++|++|++++|.+++ .+|. .++++++|++|++++|.+++.    .+..+++|  ++|++++|++  +.+....
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~  190 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETES  190 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred             cccCCEEECCCCCccccCchH-hhcccCcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCccc
Confidence            8999999999999984 2334 788999999999999998862    33444555  9999999988  5554443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=1.4e-16  Score=118.57  Aligned_cols=114  Identities=27%  Similarity=0.346  Sum_probs=99.8

Q ss_pred             CCCCCCEEeCCCCCcc-cccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116          100 PFQQLESLDLTWNSIA-GCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL  178 (228)
Q Consensus       100 ~l~~L~~L~ls~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  178 (228)
                      ..++|++|++++|.++ +..+..    +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|. .+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l   94 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL   94 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC----CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred             CcccCCEEECCCCCCChhhHHHH----HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence            4578999999999998 455554    68899999999999999866  7789999999999999999965775 77789


Q ss_pred             CCCCEEEcccCCCCCCCCh-hhhcCCCCCcEEECCCCcCCcccC
Q 027116          179 SNLEELDMSDNAINNPVIP-KDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p~-~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      ++|++|++++|.+++ ++. ..+..+++|++|++++|+++.++.
T Consensus        95 ~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           95 PNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             TTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             CCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            999999999999998 552 388999999999999999998876

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=4.7e-16  Score=126.05  Aligned_cols=128  Identities=28%  Similarity=0.318  Sum_probs=112.1

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      .+++.|++++|.+....       .+..+++|++|++++|.+++..+      +..+++|++|++++|.+++ ++ .+..
T Consensus        46 ~~L~~L~l~~~~i~~~~-------~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-~~-~l~~  110 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKD  110 (291)
T ss_dssp             HTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred             CcccEEEccCCCcccCh-------hHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence            46889999999985432       37889999999999999998655      7889999999999999985 33 4899


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +++|++|++++|.++ .++  .+..+++|+.|++++|.+++ + . .+..+++|++|++++|+++.++.
T Consensus       111 l~~L~~L~L~~n~i~-~~~--~l~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          111 LKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITD-I-T-VLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCC-C-G-GGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCEEECCCCcCC-CCh--hhcCCCCCCEEEccCCcCCc-c-h-hhccCCCCCEEEccCCccccchh
Confidence            999999999999998 454  78999999999999999998 4 4 78999999999999999998864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.68  E-value=2.8e-16  Score=128.74  Aligned_cols=112  Identities=20%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             cccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116           97 LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD  176 (228)
Q Consensus        97 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  176 (228)
                      .+..+++|++|++++|.+++..+...   +..+++|++|++++|.+++. + ....+++|++|++++|.++ .+|. .+.
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~-~~~  211 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGP-EFQ  211 (317)
T ss_dssp             CTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECG-GGG
T ss_pred             hhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchh-hhc
Confidence            34445555555555555555443321   12455566666666655533 2 1223556666666666665 3444 455


Q ss_pred             CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      .+++|+.|++++|.+++ +|. .+..+++|++|++++|+++
T Consensus       212 ~l~~L~~L~L~~N~l~~-l~~-~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          212 SAAGVTWISLRNNKLVL-IEK-ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGTTCSEEECTTSCCCE-ECT-TCCCCTTCCEEECTTCCCB
T ss_pred             ccCcccEEECcCCcccc-hhh-HhhcCCCCCEEEccCCCcc
Confidence            55666666666666664 555 5555666666666666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4e-16  Score=124.70  Aligned_cols=127  Identities=28%  Similarity=0.330  Sum_probs=94.3

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|.+....     +  +..+++|++|++++|++++..+      +.. ++|++|++++|.+++.  +.+.
T Consensus        62 l~~L~~L~L~~N~i~~~~-----~--l~~l~~L~~L~L~~N~l~~l~~------~~~-~~L~~L~L~~N~l~~~--~~l~  125 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLS-----P--LKDLTKLEELSVNRNRLKNLNG------IPS-ACLSRLFLDNNELRDT--DSLI  125 (263)
T ss_dssp             CTTCCEEECCSSCCCCCG-----G--GTTCSSCCEEECCSSCCSCCTT------CCC-SSCCEEECCSSCCSBS--GGGT
T ss_pred             CCCCCEEECCCCccCCCh-----h--hccCCCCCEEECCCCccCCcCc------ccc-CcccEEEccCCccCCC--hhhc
Confidence            356778888888774322     1  6777888888888888877543      333 7888888888888753  3577


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      .+++|++|++++|+++ .++  .+..+++|+.|++++|.+++ + . .+..+++|++|++++|+++..+
T Consensus       126 ~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~~-~-~-~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITN-T-G-GLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCCB-C-T-TSTTCCCCCEEEEEEEEEECCC
T ss_pred             CcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCcc-h-H-HhccCCCCCEEeCCCCcccCCc
Confidence            8888888888888887 454  67788888888888888887 3 3 6778888888888888877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=9.2e-17  Score=139.16  Aligned_cols=114  Identities=20%  Similarity=0.282  Sum_probs=98.3

Q ss_pred             CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC-CCCCCCEEeccCccccCccChhhhcCC
Q 027116          100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG-GLSSLKHLSLFHNRLNGSVDIKELDSL  178 (228)
Q Consensus       100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~~l  178 (228)
                      .+++|++|++++|.+++..+..    +..+++|++|++++|.+++..|..+. .+++|++|+|++|.+++ ++  ....+
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~--~~~~l  190 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK--GQVVF  190 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE--CCCCC
T ss_pred             ccCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-cc--ccccC
Confidence            4678888889999888876655    78899999999999999988888776 78999999999999984 54  45568


Q ss_pred             CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      ++|+.|++++|.+++ +|. .+..+++|+.|++++|+|+.+|..
T Consensus       191 ~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~lp~~  232 (487)
T 3oja_A          191 AKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVLIEKA  232 (487)
T ss_dssp             TTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCCEECTT
T ss_pred             CCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCCcCcccchh
Confidence            999999999999998 777 688999999999999999998865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.68  E-value=1.1e-16  Score=131.16  Aligned_cols=114  Identities=20%  Similarity=0.283  Sum_probs=96.5

Q ss_pred             CCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc-CCCCCCCEEeccCccccCccChhhhcCC
Q 027116          100 PFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL-GGLSSLKHLSLFHNRLNGSVDIKELDSL  178 (228)
Q Consensus       100 ~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  178 (228)
                      .+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+ ..+++|++|++++|.++ .++  ....+
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~l  190 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK--GQVVF  190 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBC----TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEE--CCCCC
T ss_pred             ccCCCCEEECCCCCCCCccchh----hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccc--ccccc
Confidence            4677888888888888876654    7788999999999999998777766 47899999999999998 455  44568


Q ss_pred             CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      ++|+.|++++|.+++ +|. .+..+++|++|++++|+|+.+|..
T Consensus       191 ~~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~L~~N~l~~l~~~  232 (317)
T 3o53_A          191 AKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVLIEKA  232 (317)
T ss_dssp             TTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCCEECTT
T ss_pred             ccCCEEECCCCcCCc-chh-hhcccCcccEEECcCCcccchhhH
Confidence            999999999999998 787 688999999999999999998864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.68  E-value=5.7e-16  Score=115.86  Aligned_cols=105  Identities=23%  Similarity=0.202  Sum_probs=80.7

Q ss_pred             EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116           76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS  155 (228)
Q Consensus        76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  155 (228)
                      +.+++++|++.....     ..   .++|++|++++|.+++..+..    |..+++|++|+|++|++++..+..|..+++
T Consensus        12 ~~l~~s~n~l~~ip~-----~~---~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A           12 TTVDCSGKSLASVPT-----GI---PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             TEEECTTSCCSSCCS-----CC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEeCCCCcCccCc-----cC---CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCC
Confidence            468888888754322     21   367888888888888876665    788888888888888888666666788888


Q ss_pred             CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116          156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      |++|+|++|+++ .+|...+..+++|+.|+|++|.++.
T Consensus        80 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           80 LTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            888888888887 4665467888888888888888876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.68  E-value=5e-16  Score=138.63  Aligned_cols=139  Identities=18%  Similarity=0.205  Sum_probs=98.5

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccc----cCCCCCCcEEECCCCccCcccccc
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDR----LSRLNNLKFLHLDFNWFNNSIFSS  149 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~  149 (228)
                      +++.|++++|.+..     ++...+..+++|++|++++|.++..++.. +..    +.++++|++|++++|.++ .+|..
T Consensus       434 ~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  506 (636)
T 4eco_A          434 NVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTEIPKNS-LKDENENFKNTYLLTSIDLRFNKLT-KLSDD  506 (636)
T ss_dssp             CEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSBCCSSS-SEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred             CCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCCcCHHH-hccccccccccCCccEEECcCCcCC-ccChh
Confidence            67777777777743     33445566788888888888887443332 100    112337888888888887 56666


Q ss_pred             cC--CCCCCCEEeccCccccCccChhhhcCCCCCCEEEc------ccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          150 LG--GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDM------SDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       150 ~~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +.  .+++|++|++++|.+++ +|. .+..+++|+.|++      ++|.+.+.+|. .+..+++|++|++++|+++.||.
T Consensus       507 ~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~ip~  583 (636)
T 4eco_A          507 FRATTLPYLVGIDLSYNSFSK-FPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIRKVNE  583 (636)
T ss_dssp             GSTTTCTTCCEEECCSSCCSS-CCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCCCBCCS
T ss_pred             hhhccCCCcCEEECCCCCCCC-cCh-hhhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCEEECCCCcCCccCH
Confidence            65  78888888888888874 776 6777888888888      45667776777 77778888888888888877776


Q ss_pred             C
Q 027116          222 S  222 (228)
Q Consensus       222 ~  222 (228)
                      .
T Consensus       584 ~  584 (636)
T 4eco_A          584 K  584 (636)
T ss_dssp             C
T ss_pred             h
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.67  E-value=3.9e-17  Score=133.39  Aligned_cols=115  Identities=16%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc--cc--cccCCCCCCCEEeccCccccCccChh---
Q 027116          101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS--IF--SSLGGLSSLKHLSLFHNRLNGSVDIK---  173 (228)
Q Consensus       101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~--~~~~~l~~L~~L~Ls~n~l~~~~p~~---  173 (228)
                      +++|++|++++|.+++.++..    +..+++|++|++++|++.+.  .+  ..+..+++|++|++++|+++ .++..   
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~  218 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQ----VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA  218 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTS----CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHH----hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH
Confidence            444444555554444443333    44455555555555544321  11  11234444444444444443 22210   


Q ss_pred             hhcCCCCCCEEEcccCCCCCCCChhhhcCC---CCCcEEECCCCcCCcccC
Q 027116          174 ELDSLSNLEELDMSDNAINNPVIPKDYRGL---RKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       174 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l---~~L~~L~L~~N~i~~i~~  221 (228)
                      .+..+++|++|++++|.+++..|. .+..+   ++|++|++++|+|+++|.
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~lp~  268 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQVPK  268 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred             HHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCCchhh
Confidence            123444555555555555543333 33332   345555555555544443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.67  E-value=8.7e-16  Score=115.32  Aligned_cols=105  Identities=22%  Similarity=0.217  Sum_probs=80.9

Q ss_pred             EEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116           76 IKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS  155 (228)
Q Consensus        76 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  155 (228)
                      +.++++++++....     ...   .++|++|++++|.+++.++..    |..+++|++|+|++|++++..+..|..+++
T Consensus        15 ~~l~~~~n~l~~iP-----~~~---~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQNIRLASVP-----AGI---PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCSSCCSSCC-----SCC---CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cEEEeCCCCCCccC-----CCc---CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            46888888875422     222   267888888888888877665    788888888888888888665556778888


Q ss_pred             CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116          156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      |++|+|++|+++ .+|...+..+++|++|++++|.+..
T Consensus        83 L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           83 LTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             hhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence            888888888887 5666458888888888888888876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.66  E-value=9.3e-17  Score=140.49  Aligned_cols=138  Identities=22%  Similarity=0.269  Sum_probs=111.7

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc-ccccc
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS-IFSSL  150 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~  150 (228)
                      ..+++.|++++|++..     +.+..|..+++|++|++++|.+++.++..    +..+++|++|++++|.+++. .|..+
T Consensus        49 l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~  119 (549)
T 2z81_A           49 CANLQVLILKSSRINT-----IEGDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLF  119 (549)
T ss_dssp             CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred             CCcccEEECCCCCcCc-----cChhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhh
Confidence            4679999999999854     44567889999999999999999877765    88999999999999999863 56678


Q ss_pred             CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcC------------------------CCCC
Q 027116          151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRG------------------------LRKL  206 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~------------------------l~~L  206 (228)
                      ..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|. .+..                        +++|
T Consensus       120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  198 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFADILSSV  198 (549)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTB
T ss_pred             hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh-hhhccccCceEecccCcccccchhhHhhcccc
Confidence            99999999999999855578765889999999999999999885555 5544                        4566


Q ss_pred             cEEECCCCcCCcc
Q 027116          207 NTLHLGGTEIAMI  219 (228)
Q Consensus       207 ~~L~L~~N~i~~i  219 (228)
                      ++|++++|+++.+
T Consensus       199 ~~L~L~~n~l~~~  211 (549)
T 2z81_A          199 RYLELRDTNLARF  211 (549)
T ss_dssp             SEEEEESCBCTTC
T ss_pred             cEEEccCCccccc
Confidence            6666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=4.9e-16  Score=124.17  Aligned_cols=126  Identities=28%  Similarity=0.322  Sum_probs=108.7

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|++....       .+..+++|++|++++|.+++..+      +..+++|++|++++|++++. |. +.
T Consensus        40 l~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~l-~~-~~  104 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-------GMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKNL-NG-IP  104 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSCC-TT-CC
T ss_pred             cCcCcEEECcCCCcccch-------HHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCCc-Cc-cc
Confidence            357889999999985422       47889999999999999998665      78899999999999999863 33 33


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i  219 (228)
                      . ++|++|++++|.++ .++  .+..+++|+.|++++|++++ ++  .+..+++|++|++++|+|+.+
T Consensus       105 ~-~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          105 S-ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             C-SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBC
T ss_pred             c-CcccEEEccCCccC-CCh--hhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcch
Confidence            3 89999999999998 465  68999999999999999998 53  688899999999999999987

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.66  E-value=3.7e-16  Score=135.94  Aligned_cols=137  Identities=18%  Similarity=0.216  Sum_probs=112.5

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc--ccccccC
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN--SIFSSLG  151 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~  151 (228)
                      .++.|++++|++...       ..+..+++|++|++++|.+++..+..    +..+++|++|++++|++++  .+|..+.
T Consensus       303 ~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~  371 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHM-------LCPSKISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKELSKIAEMTT  371 (520)
T ss_dssp             CCSEEEEESSCCCCC-------CCCSSCCCCCEEECCSSCCCTTTTTT----CCCCSSCCEEECCSSCCCBHHHHHHHHT
T ss_pred             ceeEEEcCCCccccc-------cchhhCCcccEEEeECCccChhhhhh----hccCCCCCEEEccCCccCccccchHHHh
Confidence            356666666665221       11267899999999999999876665    8999999999999999997  5567799


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCcc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      .+++|++|++++|.+++.+|...+..+++|+.|++++|.+++.+|. .+.  ++|++|++++|+|+.+|...+
T Consensus       372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~N~l~~ip~~~~  441 (520)
T 2z7x_B          372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLP--PRIKVLDLHSNKIKSIPKQVV  441 (520)
T ss_dssp             TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-SCC--TTCCEEECCSSCCCCCCGGGG
T ss_pred             hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh-hhc--ccCCEEECCCCcccccchhhh
Confidence            9999999999999999668875688899999999999999886655 333  799999999999999987544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.66  E-value=1.2e-16  Score=130.47  Aligned_cols=136  Identities=21%  Similarity=0.171  Sum_probs=92.8

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc---cCcccccccCCCCCCcEEECCCCccCccccc
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC---VENKGLDRLSRLNNLKFLHLDFNWFNNSIFS  148 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  148 (228)
                      ..+++.|++++|.+..     +.+..+..+++|++|++++|++.+.   .+..   .+..+++|++|++++|.++. ++.
T Consensus       144 ~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~l~~L~~L~Ls~N~l~~-l~~  214 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPA-----FSCEQVRAFPALTSLDLSDNPGLGERGLMAAL---CPHKFPAIQNLALRNTGMET-PTG  214 (310)
T ss_dssp             CSCCCEEEEECCSSCC-----CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS---CTTSSCCCCSCBCCSSCCCC-HHH
T ss_pred             ccCCCEEEeeCCCcch-----hhHHHhccCCCCCEEECCCCCCccchhhhHHH---hhhcCCCCCEEECCCCCCCc-hHH
Confidence            3478888888888743     3445678889999999999987652   2221   13567778888888888763 222


Q ss_pred             ----ccCCCCCCCEEeccCccccCccChhhhcCC---CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          149 ----SLGGLSSLKHLSLFHNRLNGSVDIKELDSL---SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       149 ----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                          .+..+++|++|++++|.+++..|. .+..+   ++|++|++++|+++. +|. .+.  ++|++|++++|+|+.+|.
T Consensus       215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~-lp~-~~~--~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          215 VCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQ-VPK-GLP--AKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             HHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCS-CCS-CCC--SCCSCEECCSCCCCSCCC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCCc-hhh-hhc--CCCCEEECCCCcCCCCch
Confidence                245667788888888888755454 45554   578888888888775 666 442  677778888887777643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.64  E-value=6.4e-16  Score=142.03  Aligned_cols=138  Identities=20%  Similarity=0.245  Sum_probs=112.5

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccc--
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSS--  149 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--  149 (228)
                      ..+++.|++++|..  .+.  +.+..|.++++|++|++++|.+++..|..    |.++++|++|+|++|.+++..|..  
T Consensus        47 l~~L~~LdLs~n~~--~~~--i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~  118 (844)
T 3j0a_A           47 LEQLQLLELGSQYT--PLT--IDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGY  118 (844)
T ss_dssp             CCSCSEEEECTTCC--CCE--ECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred             cccCeEEeCCCCCC--ccc--cCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCcc
Confidence            46789999999965  232  55677899999999999999999987776    899999999999999999866665  


Q ss_pred             cCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCC--CCCcEEECCCCcCCc
Q 027116          150 LGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGL--RKLNTLHLGGTEIAM  218 (228)
Q Consensus       150 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l--~~L~~L~L~~N~i~~  218 (228)
                      +..+++|++|++++|.+++..+...++++++|++|++++|.+++..+. .+..+  ++|+.|++++|.++.
T Consensus       119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCC
T ss_pred             ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEECCCCcccc
Confidence            899999999999999998654434789999999999999999885555 55554  566666666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=2.1e-15  Score=138.36  Aligned_cols=139  Identities=18%  Similarity=0.202  Sum_probs=95.8

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccc----cCCCCCCcEEECCCCccCcccccc
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDR----LSRLNNLKFLHLDFNWFNNSIFSS  149 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~  149 (228)
                      +++.|++++|.+..     ++...+..+++|++|++++|.++..+... +..    +.++++|++|+|++|+++ .+|..
T Consensus       674 ~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~-~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~  746 (876)
T 4ecn_A          674 NASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTSIPENS-LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD  746 (876)
T ss_dssp             CEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSCCCTTS-SSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred             CcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCccChHH-hccccccccccCCccEEECCCCCCc-cchHH
Confidence            56666666666642     33344556778888888888887543332 000    112337888888888887 56666


Q ss_pred             cC--CCCCCCEEeccCccccCccChhhhcCCCCCCEEEccc------CCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          150 LG--GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD------NAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       150 ~~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~------N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +.  .+++|++|++++|.+++ +|. .+..+++|+.|+|++      |.+.+.+|. .+..+++|+.|+|++|+|+.||.
T Consensus       747 l~~~~l~~L~~L~Ls~N~L~~-lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L~~Ip~  823 (876)
T 4ecn_A          747 FRATTLPYLSNMDVSYNCFSS-FPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDE  823 (876)
T ss_dssp             GSTTTCTTCCEEECCSSCCSS-CCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCCCBCCS
T ss_pred             hhhccCCCcCEEEeCCCCCCc-cch-hhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCCCCEEECCCCCCCccCH
Confidence            65  78888888888888874 676 677788888888865      666776776 77778888888888888877776


Q ss_pred             C
Q 027116          222 S  222 (228)
Q Consensus       222 ~  222 (228)
                      .
T Consensus       824 ~  824 (876)
T 4ecn_A          824 K  824 (876)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=6.9e-16  Score=115.87  Aligned_cols=115  Identities=20%  Similarity=0.174  Sum_probs=98.6

Q ss_pred             cccCCCCCCEEeCCCCCcccccCcccccccCCCC-CCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116           97 LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLN-NLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL  175 (228)
Q Consensus        97 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  175 (228)
                      .+.+..+|++|++++|.++.. +.     +..+. +|++|++++|.+++.  ..+..+++|++|++++|.++ .+|+..+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-----~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLD   84 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHH
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-----hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchh
Confidence            467788999999999999865 33     44444 999999999999865  67999999999999999998 5776456


Q ss_pred             cCCCCCCEEEcccCCCCCCCCh-hhhcCCCCCcEEECCCCcCCcccC
Q 027116          176 DSLSNLEELDMSDNAINNPVIP-KDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       176 ~~l~~L~~L~L~~N~l~~~~p~-~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      ..+++|++|++++|.++. +|. ..+..+++|++|++++|+++.++.
T Consensus        85 ~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             HHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             hcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence            899999999999999987 664 368899999999999999998775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.64  E-value=1.5e-15  Score=125.44  Aligned_cols=131  Identities=23%  Similarity=0.311  Sum_probs=89.3

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ...++.+++++|.+.....       +..+++|++|++++|.+++..+      +..+++|++|++++|.+++.  +.+.
T Consensus       198 l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~  262 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVK  262 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred             CCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHh
Confidence            3467777777777643221       5667777777777777766543      56677777777777777643  3466


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+++|++|++++|.++ .++  .+..+++|+.|++++|.+++..+. .+..+++|++|++++|+++.+++
T Consensus       263 ~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          263 DLTKLKMLNVGSNQIS-DIS--VLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             TCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCCCGG
T ss_pred             cCCCcCEEEccCCccC-CCh--hhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccccccC
Confidence            7777777777777776 343  566777777777777777763334 67777777777777777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=6.6e-16  Score=128.28  Aligned_cols=154  Identities=19%  Similarity=0.199  Sum_probs=109.8

Q ss_pred             ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116           61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN  131 (228)
Q Consensus        61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~  131 (228)
                      |.+..|.|.+         ....+++|+|++|+|+.     +++..|..+++|++|++++|++.+.++...   |.++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~   80 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPK   80 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCSCTT
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccChhH---hhcchh
Confidence            7888899964         23568999999999964     556779999999999999999876554322   778888


Q ss_pred             CcE-EECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEccc-CCCCCCCChhhhcCCC-CCcE
Q 027116          132 LKF-LHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD-NAINNPVIPKDYRGLR-KLNT  208 (228)
Q Consensus       132 L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l~-~L~~  208 (228)
                      +++ +.++.|+++...|..|..+++|++|++++|+++ .+|...+....++..+++.+ +.+.. ++...|..+. .+++
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~  158 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVI  158 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEE
T ss_pred             hhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhh
Confidence            775 566779998777888999999999999999997 45543444445555666654 34444 4443444443 4566


Q ss_pred             EECCCCcCCcccCCcc
Q 027116          209 LHLGGTEIAMIDGSKV  224 (228)
Q Consensus       209 L~L~~N~i~~i~~~~~  224 (228)
                      |++++|+|++|+...|
T Consensus       159 L~L~~N~i~~i~~~~f  174 (350)
T 4ay9_X          159 LWLNKNGIQEIHNSAF  174 (350)
T ss_dssp             EECCSSCCCEECTTSS
T ss_pred             hccccccccCCChhhc
Confidence            6666666666665544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=2.7e-15  Score=132.97  Aligned_cols=127  Identities=30%  Similarity=0.394  Sum_probs=68.1

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ...++.|+|++|.+.....       +..+++|+.|++++|.+++.. .     +..+++|++|+|++|.+++.  ..+.
T Consensus        64 l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~l~-~-----l~~l~~L~~L~Ls~N~l~~l--~~l~  128 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP-------LTNLKNLGWLFLDENKIKDLS-S-----LKDLKKLKSLSLEHNGISDI--NGLV  128 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCCT-T-----STTCTTCCEEECTTSCCCCC--GGGG
T ss_pred             CCCCCEEEeeCCCCCCChh-------hccCCCCCEEECcCCCCCCCh-h-----hccCCCCCEEEecCCCCCCC--cccc
Confidence            3456777777776643221       455666666666666665532 1     55556666666666665532  2355


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i  219 (228)
                      .+++|+.|+|++|.+++ ++  .+..+++|+.|+|++|.+.+ ++.  +..+++|+.|+|++|+|+.+
T Consensus       129 ~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          129 HLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             GCTTCSEEECCSSCCCC-CG--GGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCccCEEECCCCccCC-ch--hhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCCC
Confidence            55555555555555552 32  45555555555555555554 221  44455555555555555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.63  E-value=2.3e-15  Score=124.38  Aligned_cols=126  Identities=25%  Similarity=0.342  Sum_probs=64.4

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.|++++|.+...+.       +..+++|++|++++|.+++.. .     +..+++|++|++++|.+++.  ..+..
T Consensus       221 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~l~~n~l~~~--~~~~~  285 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDLSP-------LANLSQLTWLEIGTNQISDIN-A-----VKDLTKLKMLNVGSNQISDI--SVLNN  285 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG-G-----GTTCTTCCEEECCSSCCCCC--GGGGG
T ss_pred             CcCCEEEccCCccCCCcc-------hhcCCCCCEEECCCCccCCCh-h-----HhcCCCcCEEEccCCccCCC--hhhcC
Confidence            345555565555532111       445555666666665555431 1     45555566666666555533  23555


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      +++|++|++++|.+++..+ ..+..+++|+.|++++|++++ ++.  +..+++|++|++++|+|+
T Consensus       286 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITD-IRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCC-CGG--GGGCTTCSEESSSCC---
T ss_pred             CCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCcccc-ccC--hhhhhccceeehhhhccc
Confidence            5556666666665553222 255555556666666665555 222  445555566666655554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=3.1e-15  Score=132.58  Aligned_cols=130  Identities=27%  Similarity=0.301  Sum_probs=112.6

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|+|++|.+...       ..+..+++|++|++++|.+++...      +..+++|+.|+|++|.+++.  ..+.
T Consensus        86 l~~L~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~N~l~~l~~------l~~l~~L~~L~Ls~N~l~~l--~~l~  150 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKDL-------SSLKDLKKLKSLSLEHNGISDING------LVHLPQLESLYLGNNKITDI--TVLS  150 (605)
T ss_dssp             CTTCCEEECCSSCCCCC-------TTSTTCTTCCEEECTTSCCCCCGG------GGGCTTCSEEECCSSCCCCC--GGGG
T ss_pred             CCCCCEEECcCCCCCCC-------hhhccCCCCCEEEecCCCCCCCcc------ccCCCccCEEECCCCccCCc--hhhc
Confidence            46799999999998542       247889999999999999987532      88899999999999999865  5789


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      .+++|++|+|++|.+++ ++  .+..+++|+.|+|++|.+++ + . .+..+++|+.|+|++|+++..|..
T Consensus       151 ~l~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~-l-~-~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          151 RLTKLDTLSLEDNQISD-IV--PLAGLTKLQNLYLSKNHISD-L-R-ALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             SCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCB-C-G-GGTTCTTCSEEECCSEEEECCCCC
T ss_pred             ccCCCCEEECcCCcCCC-ch--hhccCCCCCEEECcCCCCCC-C-h-HHccCCCCCEEEccCCcCcCCccc
Confidence            99999999999999985 44  38899999999999999998 5 3 689999999999999999876543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=6.9e-15  Score=109.93  Aligned_cols=109  Identities=19%  Similarity=0.225  Sum_probs=93.8

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE  182 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  182 (228)
                      ..+.+++++|.++..+..     +  .++|++|+|++|.+++..|..|..+++|++|+|++|+++ .+|...+..+++|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~-----~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTG-----I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLT   81 (170)
T ss_dssp             ETTEEECTTSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             CCCEEEeCCCCcCccCcc-----C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCC
Confidence            457899999999885543     3  488999999999999888888999999999999999998 57765788999999


Q ss_pred             EEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          183 ELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       183 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      +|+|++|++++ ++...|..+++|++|+|++|+++...
T Consensus        82 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           82 QLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             EEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999999998 66647899999999999999987543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=6.5e-15  Score=129.71  Aligned_cols=109  Identities=24%  Similarity=0.352  Sum_probs=99.1

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE  182 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  182 (228)
                      .|+.|++++|.+++.+ .     +..+++|+.|+|++|.++ .+|..++.+++|++|+|++|.+++ +|  .++.+++|+
T Consensus       442 ~L~~L~Ls~n~l~~lp-~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLC-H-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSSCC-C-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred             CceEEEecCCCCCCCc-C-----ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence            5889999999999853 3     788999999999999999 788899999999999999999994 77  799999999


Q ss_pred             EEEcccCCCCCCC-ChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          183 ELDMSDNAINNPV-IPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       183 ~L~L~~N~l~~~~-p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      .|+|++|.+++.. |. .+..+++|+.|++++|+|+.+++.
T Consensus       512 ~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             EEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             EEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccH
Confidence            9999999999944 77 899999999999999999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=1.5e-14  Score=108.47  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=95.2

Q ss_pred             CCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCE
Q 027116          104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEE  183 (228)
Q Consensus       104 L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~  183 (228)
                      -+.+++++|.++..+..     +  .++|++|+|++|.+++..|..|..+++|++|+|++|+++ .+|...+..+++|++
T Consensus        14 ~~~l~~~~n~l~~iP~~-----~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAG-----I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCCccCCC-----c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhE
Confidence            47899999999775543     3  389999999999999888889999999999999999998 577756789999999


Q ss_pred             EEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          184 LDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       184 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      |+|++|+|++ +|...|..+++|++|++++|++...+.
T Consensus        86 L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           86 LDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             EECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             EECCCCccce-eCHHHhccccCCCEEEeCCCCcccccc
Confidence            9999999998 676469999999999999999986553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.58  E-value=9e-15  Score=125.80  Aligned_cols=108  Identities=24%  Similarity=0.376  Sum_probs=57.1

Q ss_pred             cCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCC
Q 027116           99 TPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSL  178 (228)
Q Consensus        99 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  178 (228)
                      ..+++|++|++++|.+++..+      +..+++|++|++++|.+++..|  +..+++|++|++++|.+++ ++  .+..+
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l  352 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLANL  352 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTTC
T ss_pred             cCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhccC
Confidence            334444444444444444322      3445555555555555554433  4455555555555555552 32  45556


Q ss_pred             CCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          179 SNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       179 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      ++|+.|++++|++++..|   +..+++|++|++++|+++.+|
T Consensus       353 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          353 TNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             TTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECCC
T ss_pred             CCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCCc
Confidence            666666666666655222   455666666666666665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=5.6e-15  Score=130.09  Aligned_cols=123  Identities=23%  Similarity=0.204  Sum_probs=102.9

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCC
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL  153 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  153 (228)
                      .++.|++++|.+..     ++ . +..+++|++|++++|.++.. |..    ++.+++|++|+|++|.+++ +| .++.+
T Consensus       442 ~L~~L~Ls~n~l~~-----lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-----LC-H-LEQLLLVTHLDLSHNRLRAL-PPA----LAALRCLEVLQASDNALEN-VD-GVANL  507 (567)
T ss_dssp             TCSEEECTTSCCSS-----CC-C-GGGGTTCCEEECCSSCCCCC-CGG----GGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             CceEEEecCCCCCC-----Cc-C-ccccccCcEeecCccccccc-chh----hhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence            47789999999954     22 2 78999999999999999954 444    8999999999999999996 56 79999


Q ss_pred             CCCCEEeccCccccCcc-ChhhhcCCCCCCEEEcccCCCCCCCCh--hhhcCCCCCcEEEC
Q 027116          154 SSLKHLSLFHNRLNGSV-DIKELDSLSNLEELDMSDNAINNPVIP--KDYRGLRKLNTLHL  211 (228)
Q Consensus       154 ~~L~~L~Ls~n~l~~~~-p~~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~l~~L~~L~L  211 (228)
                      ++|++|+|++|.+++.. |. .++.+++|+.|++++|.+++..+.  ..+..+++|+.|++
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999999999544 66 899999999999999999983322  13445899999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=6e-15  Score=129.76  Aligned_cols=130  Identities=17%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             eeeeE-EECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC
Q 027116           62 QWERV-ECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN  140 (228)
Q Consensus        62 ~~~gv-~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n  140 (228)
                      .|.++ .|..  ++++.|++++|++...+     ...   +++|++|++++|.++..+ .       .+++|++|++++|
T Consensus        49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~lp-----~~l---~~~L~~L~Ls~N~l~~ip-~-------~l~~L~~L~Ls~N  110 (571)
T 3cvr_A           49 AVSLLKECLI--NQFSELQLNRLNLSSLP-----DNL---PPQITVLEITQNALISLP-E-------LPASLEYLDACDN  110 (571)
T ss_dssp             HHHHHHHHHH--TTCSEEECCSSCCSCCC-----SCC---CTTCSEEECCSSCCSCCC-C-------CCTTCCEEECCSS
T ss_pred             hhhhcccccc--CCccEEEeCCCCCCccC-----HhH---cCCCCEEECcCCCCcccc-c-------ccCCCCEEEccCC
Confidence            67777 5642  46777888877774322     111   245566666666555322 1       1344444444444


Q ss_pred             ccCcccccccC------------------CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcC
Q 027116          141 WFNNSIFSSLG------------------GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRG  202 (228)
Q Consensus       141 ~l~~~~~~~~~------------------~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  202 (228)
                      .+++ +|. +.                  .+++|++|++++|.++ .+|.    .+++|+.|++++|++++ +|.  +. 
T Consensus       111 ~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~--l~-  179 (571)
T 3cvr_A          111 RLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE--LP-  179 (571)
T ss_dssp             CCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC--CC-
T ss_pred             CCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch--hh-
Confidence            4443 332 22                  3455555555555555 2442    34556666666666655 444  32 


Q ss_pred             CCCCcEEECCCCcCCcccC
Q 027116          203 LRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       203 l~~L~~L~L~~N~i~~i~~  221 (228)
                       ++|++|++++|+|+.+|.
T Consensus       180 -~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          180 -ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             -TTCCEEECCSSCCSSCCC
T ss_pred             -CCCCEEECcCCCCCchhh
Confidence             566666666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.57  E-value=2.6e-14  Score=122.89  Aligned_cols=88  Identities=25%  Similarity=0.394  Sum_probs=48.0

Q ss_pred             cCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCC
Q 027116          126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRK  205 (228)
Q Consensus       126 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~  205 (228)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++  .+..+++|+.|++++|++++ + . .+..+++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~-~-~-~l~~l~~  354 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD-IS--PVSSLTKLQRLFFYNNKVSD-V-S-SLANLTN  354 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC-CG--GGGGCTTCCEEECCSSCCCC-C-G-GGTTCTT
T ss_pred             ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC-ch--hhccCccCCEeECCCCccCC-c-h-hhccCCC
Confidence            3444555555555555543322  4455555555555555553 22  24555666666666666665 2 2 4566667


Q ss_pred             CcEEECCCCcCCcccC
Q 027116          206 LNTLHLGGTEIAMIDG  221 (228)
Q Consensus       206 L~~L~L~~N~i~~i~~  221 (228)
                      |++|++++|+++.+++
T Consensus       355 L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          355 INWLSAGHNQISDLTP  370 (466)
T ss_dssp             CCEEECCSSCCCBCGG
T ss_pred             CCEEeCCCCccCccch
Confidence            7777777776665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.53  E-value=1.5e-13  Score=118.07  Aligned_cols=124  Identities=21%  Similarity=0.166  Sum_probs=76.0

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      .+++.|++++|.+...        .++.+++|++|++++|.+++. +      +..+++|++|++++|.+++. |  +..
T Consensus        64 ~~L~~L~Ls~n~l~~~--------~~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~l-~--~~~  125 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL--------DLSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTKL-D--VSQ  125 (457)
T ss_dssp             TTCSEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSCC-C--CTT
T ss_pred             CCCCEEEccCCcCCeE--------ccccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCee-c--CCC
Confidence            3455566666655321        145566666666666666553 1      55566666666666666642 2  566


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +++|++|++++|.+++ ++   ++.+++|+.|++++|...+.+   .+..+++|++|++++|+++.++.
T Consensus       126 l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~l  187 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELDV  187 (457)
T ss_dssp             CTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCCC
T ss_pred             CCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceecc
Confidence            6666666666666663 32   556666667777666443323   35677888888888888888763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=1.3e-15  Score=137.92  Aligned_cols=112  Identities=25%  Similarity=0.382  Sum_probs=97.3

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ...++.|+|++|.+..     ++.. +..+++|++|+|++|.++. +|..    +..+++|++|+|++|.|+ .+|..+.
T Consensus       223 l~~L~~L~Ls~n~l~~-----l~~~-~~~l~~L~~L~Ls~N~l~~-lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFN-----ISAN-IFKYDFLTRLYLNGNSLTE-LPAE----IKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             CCCCCEEECTTSCCSC-----CCGG-GGGCCSCSCCBCTTSCCSC-CCGG----GGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             CCCCcEEECCCCCCCC-----CChh-hcCCCCCCEEEeeCCcCcc-cChh----hhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            4678999999999853     2233 4489999999999999994 4444    889999999999999999 7799999


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP  197 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~  197 (228)
                      .+++|++|+|++|.++ .+|. .++.+++|+.|+|++|.+++.+|.
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCS-STTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CCCCCCEEECCCCCCC-ccCh-hhhcCCCccEEeCCCCccCCCChH
Confidence            9999999999999997 8998 699999999999999999985554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.51  E-value=1.8e-13  Score=120.41  Aligned_cols=101  Identities=23%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE  182 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  182 (228)
                      +|++|++++|.+++.++        .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.  +.  ++|+
T Consensus       121 ~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~  183 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE--------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLE  183 (571)
T ss_dssp             TCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCC
T ss_pred             CCCEEECCCCcCCCCCC--------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCC
Confidence            66666666666665222        46789999999999986 554   57899999999999984 885  44  8999


Q ss_pred             EEEcccCCCCCCCChhhhcCCCCC-------cEEECCCCcCCcccCCccc
Q 027116          183 ELDMSDNAINNPVIPKDYRGLRKL-------NTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       183 ~L~L~~N~l~~~~p~~~~~~l~~L-------~~L~L~~N~i~~i~~~~~~  225 (228)
                      .|++++|+|+. +|.  +..  +|       +.|++++|+|+.||...+.
T Consensus       184 ~L~Ls~N~L~~-lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~  228 (571)
T 3cvr_A          184 ALDVSTNLLES-LPA--VPV--RNHHSEETEIFFRCRENRITHIPENILS  228 (571)
T ss_dssp             EEECCSSCCSS-CCC--CC----------CCEEEECCSSCCCCCCGGGGG
T ss_pred             EEECcCCCCCc-hhh--HHH--hhhcccccceEEecCCCcceecCHHHhc
Confidence            99999999996 776  333  66       9999999999999875543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.51  E-value=3e-14  Score=118.24  Aligned_cols=142  Identities=20%  Similarity=0.224  Sum_probs=96.7

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCE-EeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc---
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLES-LDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF---  147 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~-L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---  147 (228)
                      ..+++.|++++|.+.+  .  ++...|..++++++ +.++.|+++...+..    |..+++|++|++++|.++...+   
T Consensus        53 l~~L~~L~Ls~N~i~~--~--i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~----f~~l~~L~~L~l~~n~l~~~~~~~~  124 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLE--V--IEADVFSNLPKLHEIRIEKANNLLYINPEA----FQNLPNLQYLLISNTGIKHLPDVHK  124 (350)
T ss_dssp             CTTCCEEEEECCTTCC--E--ECTTSBCSCTTCCEEEEEEETTCCEECTTS----BCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred             CCCCCEEECcCCCCCC--c--cChhHhhcchhhhhhhcccCCcccccCchh----hhhccccccccccccccccCCchhh
Confidence            4678999999998732  1  33445566666554 444556666655554    5666666666666666543222   


Q ss_pred             ----------------------cccCCC-CCCCEEeccCccccCccChhhhcCCCCCCEEEccc-CCCCCCCChhhhcCC
Q 027116          148 ----------------------SSLGGL-SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSD-NAINNPVIPKDYRGL  203 (228)
Q Consensus       148 ----------------------~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~l  203 (228)
                                            ..+..+ ..+++|++++|+++ .++. ......+|+.+++++ |.++. +|.+.|..+
T Consensus       125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~-~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~l  201 (350)
T 4ay9_X          125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNLEE-LPNDVFHGA  201 (350)
T ss_dssp             CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT-TSSTTEEEEEEECTTCTTCCC-CCTTTTTTE
T ss_pred             cccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh-hhccccchhHHhhccCCcccC-CCHHHhccC
Confidence                                  233333 35778888899887 6776 445567788898875 56665 787678999


Q ss_pred             CCCcEEECCCCcCCcccCCcc
Q 027116          204 RKLNTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       204 ~~L~~L~L~~N~i~~i~~~~~  224 (228)
                      ++|++|++++|+|+.+|...+
T Consensus       202 ~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          202 SGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             ECCSEEECTTSCCCCCCSSSC
T ss_pred             cccchhhcCCCCcCccChhhh
Confidence            999999999999999988755

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.50  E-value=3.5e-13  Score=115.77  Aligned_cols=133  Identities=16%  Similarity=0.137  Sum_probs=83.5

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccc---------------ccccCCCCCCcEEE
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKG---------------LDRLSRLNNLKFLH  136 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~---------------~~~l~~l~~L~~L~  136 (228)
                      ...++.|++++|.+...        .+..+++|++|++++|++++..-...               .-.+..+++|++|+
T Consensus       105 l~~L~~L~L~~N~l~~l--------~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  176 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKL--------DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD  176 (457)
T ss_dssp             CTTCCEEECCSSCCSCC--------CCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred             CCcCCEEECCCCcCCee--------cCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence            45678888888877431        15666777777777777665310000               00144556666666


Q ss_pred             CCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116          137 LDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       137 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i  216 (228)
                      +++|++++ +|  +..+++|++|++++|.+++ +   .++.+++|+.|++++|++++ +|   +..+++|++|++++|++
T Consensus       177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             CCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC
T ss_pred             CCCCccce-ec--cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcC
Confidence            66666664 22  5666667777777776663 3   35667777777777777777 55   56677777888888777


Q ss_pred             CcccCCc
Q 027116          217 AMIDGSK  223 (228)
Q Consensus       217 ~~i~~~~  223 (228)
                      +.++...
T Consensus       246 ~~~~~~~  252 (457)
T 3bz5_A          246 TELDVST  252 (457)
T ss_dssp             SCCCCTT
T ss_pred             CCcCHHH
Confidence            7766543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.50  E-value=2.3e-15  Score=123.78  Aligned_cols=131  Identities=21%  Similarity=0.187  Sum_probs=98.8

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc-cCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC-VENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..++.+++++|.+....     + .+..+++|++|++++|.+++. .+..    +..+++|++|++++|.+++..+..+.
T Consensus        70 ~~l~~L~l~~n~l~~~~-----~-~~~~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~  139 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPL-----A-EHFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLA  139 (336)
T ss_dssp             TTCSEEECTTCEECSCC-----C-SCCCCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHT
T ss_pred             ccceEEEcCCccccccc-----h-hhccCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHh
Confidence            45666777777663321     1 245678899999999988754 4433    77888999999999988888888888


Q ss_pred             CCCCCCEEeccCc-cccCc-cChhhhcCCCCCCEEEcccC-CCCCC-CChhhhcCCC-CCcEEECCCCc
Q 027116          152 GLSSLKHLSLFHN-RLNGS-VDIKELDSLSNLEELDMSDN-AINNP-VIPKDYRGLR-KLNTLHLGGTE  215 (228)
Q Consensus       152 ~l~~L~~L~Ls~n-~l~~~-~p~~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~l~-~L~~L~L~~N~  215 (228)
                      .+++|++|++++| .+++. ++. .+..+++|+.|++++| .+++. ++. .+..++ +|++|++++|.
T Consensus       140 ~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          140 KNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCG
T ss_pred             cCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCc
Confidence            8999999999998 67642 444 6788889999999999 88763 344 677888 99999999984

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.50  E-value=4e-15  Score=124.92  Aligned_cols=141  Identities=20%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccc-----cCcccccccCCCCCCcEEECCCCccC----
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGC-----VENKGLDRLSRLNNLKFLHLDFNWFN----  143 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-----~~~~~~~~l~~l~~L~~L~Ls~n~l~----  143 (228)
                      ..++.|++++|++...+.. .....+..+++|++|++++|.++..     .+..    +..+++|++|+|++|.++    
T Consensus       159 ~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~----l~~~~~L~~L~Ls~n~l~~~g~  233 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG----LAYCQELKVLDLQDNTFTHLGS  233 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHH-HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT----GGGCTTCCEEECCSSCCHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHH-HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH----hhcCCCccEEECcCCCCCcHHH
Confidence            3566666666665322210 0012345667777777777777621     2211    667788888888888875    


Q ss_pred             cccccccCCCCCCCEEeccCccccCc----cChhhh--cCCCCCCEEEcccCCCCC----CCChhhh-cCCCCCcEEECC
Q 027116          144 NSIFSSLGGLSSLKHLSLFHNRLNGS----VDIKEL--DSLSNLEELDMSDNAINN----PVIPKDY-RGLRKLNTLHLG  212 (228)
Q Consensus       144 ~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~--~~l~~L~~L~L~~N~l~~----~~p~~~~-~~l~~L~~L~L~  212 (228)
                      ..+|..+..+++|++|++++|.+++.    ++. .+  +.+++|+.|++++|.+++    .+|. .+ .++++|++|+++
T Consensus       234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~  311 (386)
T 2ca6_A          234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELN  311 (386)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECT
T ss_pred             HHHHHHHccCCCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEcc
Confidence            45666777788888888888887643    333 44  337888888888888876    3555 44 567888888888


Q ss_pred             CCcCCccc
Q 027116          213 GTEIAMID  220 (228)
Q Consensus       213 ~N~i~~i~  220 (228)
                      +|+++...
T Consensus       312 ~N~l~~~~  319 (386)
T 2ca6_A          312 GNRFSEED  319 (386)
T ss_dssp             TSBSCTTS
T ss_pred             CCcCCcch
Confidence            88887544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=1.6e-13  Score=113.55  Aligned_cols=104  Identities=20%  Similarity=0.163  Sum_probs=87.2

Q ss_pred             EEEcCCC-CcccccccccCcccccCCCCCCEEeCCC-CCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCC
Q 027116           77 KLDLAQI-RKWESAEWYMNASLFTPFQQLESLDLTW-NSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLS  154 (228)
Q Consensus        77 ~L~l~~n-~l~~~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  154 (228)
                      .++++++ ++..     ++.  +..+++|++|+|++ |.+++.++..    |..+++|++|+|++|+|++..|..|..++
T Consensus        12 ~v~~~~~n~l~~-----ip~--l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           12 GLRCTRDGALDS-----LHH--LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             CEECCSSCCCTT-----TTT--SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             EEEcCCCCCCCc-----cCC--CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCc
Confidence            4588887 7743     333  78888999999996 9999887766    88999999999999999988888899999


Q ss_pred             CCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116          155 SLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       155 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      +|++|+|++|+++ .+|...+..++ |+.|+|.+|.+..
T Consensus        81 ~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           81 RLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999999999998 57764566555 9999999999886

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.49  E-value=2.7e-15  Score=123.33  Aligned_cols=132  Identities=23%  Similarity=0.256  Sum_probs=66.3

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC-ccCcc-ccccc
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-WFNNS-IFSSL  150 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~  150 (228)
                      .+++.|++++|.+...+.    +..+..+++|++|++++|.+++..+..    +..+++|++|++++| .+++. ++..+
T Consensus        93 ~~L~~L~L~~~~l~~~~~----~~~~~~~~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~l~~~~  164 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTL----HGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLL  164 (336)
T ss_dssp             BCCCEEECTTCEECHHHH----HHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             CCCCEEEccCCCcCHHHH----HHHHhhCCCCCEEeCcCcccCHHHHHH----HhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence            457777777776632111    223455666666666666655443333    445555555555555 44432 33334


Q ss_pred             CCCCCCCEEeccCc-cccC-----------------------------ccChhhhcCCCCCCEEEcccCC-CCCCCChhh
Q 027116          151 GGLSSLKHLSLFHN-RLNG-----------------------------SVDIKELDSLSNLEELDMSDNA-INNPVIPKD  199 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n-~l~~-----------------------------~~p~~~~~~l~~L~~L~L~~N~-l~~~~p~~~  199 (228)
                      ..+++|++|++++| .+++                             .++. .+..+++|+.|++++|. +++..+. .
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~-~  242 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQ-E  242 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGG-G
T ss_pred             hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHH-H
Confidence            44455555555555 4432                             2222 33445555555555555 4433333 4


Q ss_pred             hcCCCCCcEEECCCC
Q 027116          200 YRGLRKLNTLHLGGT  214 (228)
Q Consensus       200 ~~~l~~L~~L~L~~N  214 (228)
                      +..+++|++|++++|
T Consensus       243 l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          243 FFQLNYLQHLSLSRC  257 (336)
T ss_dssp             GGGCTTCCEEECTTC
T ss_pred             HhCCCCCCEeeCCCC
Confidence            455555555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.49  E-value=3.6e-13  Score=115.61  Aligned_cols=105  Identities=17%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS  177 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~  177 (228)
                      ++.+++|++|++++|++++.+. .       ..+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|. .   
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~-~-------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~-~---  213 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPD-L-------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD-L---  213 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCC-C-------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC-C---
T ss_pred             cCCCCCCCEEECCCCcCcccCC-C-------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC-C---
Confidence            5556666666666666655221 1       2355555555555553 33 35555555555555555542 332 1   


Q ss_pred             CCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          178 LSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       178 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      .++|+.|++++|.++. +|.  +..+++|++|++++|+++.+|
T Consensus       214 ~~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          214 PLSLESIVAGNNILEE-LPE--LQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSSCC
T ss_pred             cCcccEEECcCCcCCc-ccc--cCCCCCCCEEECCCCcCCccc
Confidence            1344555555554443 442  445555555555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.47  E-value=8.4e-15  Score=122.07  Aligned_cols=143  Identities=17%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             cEEEEEcCCCCcccccccccCcccccC-CCCCCEEeCCCCCcccccCcccccccCCC-CCCcEEECCCCccCccccccc-
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTP-FQQLESLDLTWNSIAGCVENKGLDRLSRL-NNLKFLHLDFNWFNNSIFSSL-  150 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~-  150 (228)
                      +++.|++++|.+...+...+. ..+.. .++|++|++++|.+++..+......+..+ ++|++|++++|.+++..+..+ 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            577777777776543321111 11122 26777777777777665544322223444 677777777777765554432 


Q ss_pred             ---CC-CCCCCEEeccCccccCc----cChhhhcCCC-CCCEEEcccCCCCCCCCh---hhhcCC-CCCcEEECCCCcCC
Q 027116          151 ---GG-LSSLKHLSLFHNRLNGS----VDIKELDSLS-NLEELDMSDNAINNPVIP---KDYRGL-RKLNTLHLGGTEIA  217 (228)
Q Consensus       151 ---~~-l~~L~~L~Ls~n~l~~~----~p~~~~~~l~-~L~~L~L~~N~l~~~~p~---~~~~~l-~~L~~L~L~~N~i~  217 (228)
                         .. .++|++|++++|.+++.    ++. .+...+ +|++|++++|.+++..+.   ..+... ++|++|++++|+|+
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence               33 24778888888877632    222 334454 788888888887763332   123344 47888888888877


Q ss_pred             c
Q 027116          218 M  218 (228)
Q Consensus       218 ~  218 (228)
                      .
T Consensus       210 ~  210 (362)
T 3goz_A          210 L  210 (362)
T ss_dssp             G
T ss_pred             h
Confidence            6

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=3.1e-13  Score=111.74  Aligned_cols=103  Identities=24%  Similarity=0.325  Sum_probs=58.0

Q ss_pred             EEeCCCC-CcccccCcccccccCCCCCCcEEECCC-CccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCE
Q 027116          106 SLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDF-NWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEE  183 (228)
Q Consensus       106 ~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~  183 (228)
                      .++++++ .++..+.      +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++ +++..|..+++|+.
T Consensus        12 ~v~~~~~n~l~~ip~------l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSR   84 (347)
T ss_dssp             CEECCSSCCCTTTTT------SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCE
T ss_pred             EEEcCCCCCCCccCC------CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCE
Confidence            3455555 5554322      45555666666664 66665555556666666666666666653 33335566666666


Q ss_pred             EEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          184 LDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       184 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      |+|++|+|++ +|...+..++ |+.|+|++|++.
T Consensus        85 L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           85 LNLSFNALES-LSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             EECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred             EeCCCCccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence            6666666665 4442444443 666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.46  E-value=6.3e-15  Score=123.71  Aligned_cols=115  Identities=23%  Similarity=0.233  Sum_probs=77.8

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc-----ccccccCCCCCCCEEeccCcccc----CccCh
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN-----SIFSSLGGLSSLKHLSLFHNRLN----GSVDI  172 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~  172 (228)
                      ++|++|++++|.++..........+..+++|++|++++|.++.     ..+..+..+++|++|++++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            6666777777766522111111125567788888888887762     23336777888888888888885    34665


Q ss_pred             hhhcCCCCCCEEEcccCCCCCC----CChhhh--cCCCCCcEEECCCCcCCc
Q 027116          173 KELDSLSNLEELDMSDNAINNP----VIPKDY--RGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       173 ~~~~~l~~L~~L~L~~N~l~~~----~p~~~~--~~l~~L~~L~L~~N~i~~  218 (228)
                       .+..+++|+.|+|++|.+++.    ++. .+  ..+++|++|++++|+|+.
T Consensus       239 -~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          239 -ALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             -HGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBH
T ss_pred             -HHccCCCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCH
Confidence             677888888888888888763    233 45  337888888888888877

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.45  E-value=1.4e-14  Score=120.64  Aligned_cols=147  Identities=18%  Similarity=0.133  Sum_probs=104.1

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCC-CCCCEEeCCCCCcccccCcccccccCC-CCCCcEEECCCCccCcccc---
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPF-QQLESLDLTWNSIAGCVENKGLDRLSR-LNNLKFLHLDFNWFNNSIF---  147 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~---  147 (228)
                      ..++.|++++|.+...+...+ ...+..+ ++|++|++++|.+++..+......+.. .++|++|++++|.+++..+   
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDEL-VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCccEEECcCCcCChHHHHHH-HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            678999999999865443211 1224445 799999999999987665443333455 3699999999999985433   


Q ss_pred             -cccCCCC-CCCEEeccCccccCccCh---hhhcCC-CCCCEEEcccCCCCCC----CChhhhcC-CCCCcEEECCCCcC
Q 027116          148 -SSLGGLS-SLKHLSLFHNRLNGSVDI---KELDSL-SNLEELDMSDNAINNP----VIPKDYRG-LRKLNTLHLGGTEI  216 (228)
Q Consensus       148 -~~~~~l~-~L~~L~Ls~n~l~~~~p~---~~~~~l-~~L~~L~L~~N~l~~~----~p~~~~~~-l~~L~~L~L~~N~i  216 (228)
                       ..+..++ +|++|++++|.+++..+.   ..+..+ ++|+.|++++|.+++.    ++. .+.. .++|++|++++|+|
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCC
Confidence             3445555 899999999999843332   134455 5999999999999873    233 3444 45999999999999


Q ss_pred             CcccC
Q 027116          217 AMIDG  221 (228)
Q Consensus       217 ~~i~~  221 (228)
                      +.++.
T Consensus       238 ~~~~~  242 (362)
T 3goz_A          238 HGPSL  242 (362)
T ss_dssp             CCCCH
T ss_pred             CcHHH
Confidence            88654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.5e-16  Score=121.84  Aligned_cols=109  Identities=28%  Similarity=0.343  Sum_probs=51.0

Q ss_pred             ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS  177 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~  177 (228)
                      +..+++|++|++++|.+++.+  .    +..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|  .+..
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~--~----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~--~~~~  113 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS--S----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS--GIEK  113 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC--C----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH--HHHH
T ss_pred             HhcCCCCCEEECCCCCCcccc--c----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC--cccc
Confidence            344455555555555554422  1    444455555555555554 33333334445555555555554 233  3444


Q ss_pred             CCCCCEEEcccCCCCCCCCh-hhhcCCCCCcEEECCCCcCC
Q 027116          178 LSNLEELDMSDNAINNPVIP-KDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       178 l~~L~~L~L~~N~l~~~~p~-~~~~~l~~L~~L~L~~N~i~  217 (228)
                      +++|+.|++++|.+++ ++. ..+..+++|++|++++|+++
T Consensus       114 l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence            4555555555555544 221 23444555555555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.44  E-value=6.1e-13  Score=118.21  Aligned_cols=80  Identities=25%  Similarity=0.208  Sum_probs=57.7

Q ss_pred             CCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116          130 NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL  209 (228)
Q Consensus       130 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L  209 (228)
                      ++|++|++++|.+++ +|   ..+++|++|++++|.++ .+|.    .+++|+.|++++|.++. +|. .+.++++|+.|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~~-lp~-~l~~l~~L~~L  289 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLTR-LPE-SLIHLSSETTV  289 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCCS-CCG-GGGGSCTTCEE
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCCc-CCH-HHhhccccCEE
Confidence            556666666666664 33   34567777777777776 5663    56778888888888885 777 78888888888


Q ss_pred             ECCCCcCCccc
Q 027116          210 HLGGTEIAMID  220 (228)
Q Consensus       210 ~L~~N~i~~i~  220 (228)
                      ++++|+++...
T Consensus       290 ~L~~N~l~~~~  300 (622)
T 3g06_A          290 NLEGNPLSERT  300 (622)
T ss_dssp             ECCSCCCCHHH
T ss_pred             EecCCCCCCcC
Confidence            88888887654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.43  E-value=1.4e-12  Score=111.85  Aligned_cols=101  Identities=20%  Similarity=0.243  Sum_probs=67.5

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL  181 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  181 (228)
                      ++|++|++++|++++. |.     +..+++|++|++++|++++ +|..   ..+|++|++++|.+++ +|  .++.+++|
T Consensus       131 ~~L~~L~L~~n~l~~l-p~-----~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L  197 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKL-PE-----LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFL  197 (454)
T ss_dssp             TTCCEEECCSSCCSSC-CC-----CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred             CCCCEEECcCCCCCCC-cc-----cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCC
Confidence            4667777777776653 32     6677777777777777764 3432   2467777777777763 55  46777777


Q ss_pred             CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      +.|++++|.+++ +|. .   .++|++|++++|+++.+|
T Consensus       198 ~~L~l~~N~l~~-l~~-~---~~~L~~L~l~~n~l~~lp  231 (454)
T 1jl5_A          198 TAIYADNNSLKK-LPD-L---PLSLESIVAGNNILEELP  231 (454)
T ss_dssp             CEEECCSSCCSS-CCC-C---CTTCCEEECCSSCCSSCC
T ss_pred             CEEECCCCcCCc-CCC-C---cCcccEEECcCCcCCccc
Confidence            777777777776 554 2   247777777777777766

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.43  E-value=1.1e-13  Score=122.96  Aligned_cols=102  Identities=23%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             CCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116          101 FQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN  180 (228)
Q Consensus       101 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~  180 (228)
                      +++|++|++++|+++..+.        .+++|++|++++|.+++ +|.   .+++|++|++++|.++ .+|.    .+++
T Consensus        80 l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~  142 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSLPV--------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPG  142 (622)
T ss_dssp             CTTCCEEEECSCCCSCCCC--------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTT
T ss_pred             CCCCCEEEcCCCcCCcCCC--------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCC
Confidence            4556666666665554222        34566666666666653 222   3456666666666666 4553    2367


Q ss_pred             CCEEEcccCCCCCCCChhhhcC---C--------------CCCcEEECCCCcCCcccC
Q 027116          181 LEELDMSDNAINNPVIPKDYRG---L--------------RKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       181 L~~L~L~~N~l~~~~p~~~~~~---l--------------~~L~~L~L~~N~i~~i~~  221 (228)
                      |++|++++|.+++ +|. .+.+   +              ++|+.|++++|+|+.++.
T Consensus       143 L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~  198 (622)
T 3g06_A          143 LQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT  198 (622)
T ss_dssp             CCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred             CCEEECcCCcCCC-cCC-ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC
Confidence            7777777777776 443 2211   1              555666666666665554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=2.1e-14  Score=122.91  Aligned_cols=120  Identities=20%  Similarity=0.131  Sum_probs=75.1

Q ss_pred             ccCCCCCCEEeCCCCCcccccCccccccc-CCCCCCcEEECCCCccCcc----cccccCCCCCCCEEeccCccccCccCh
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENKGLDRL-SRLNNLKFLHLDFNWFNNS----IFSSLGGLSSLKHLSLFHNRLNGSVDI  172 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~  172 (228)
                      +..+++|++|++++|.+++.........+ ...++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            34455666666666655443222111111 1235677777777777654    344556668888888888887643222


Q ss_pred             hhhc-----CCCCCCEEEcccCCCCC----CCChhhhcCCCCCcEEECCCCcCCcc
Q 027116          173 KELD-----SLSNLEELDMSDNAINN----PVIPKDYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       173 ~~~~-----~l~~L~~L~L~~N~l~~----~~p~~~~~~l~~L~~L~L~~N~i~~i  219 (228)
                       .+.     ..++|+.|++++|.+++    .++. .+..+++|++|++++|+|+..
T Consensus       360 -~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          360 -ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             -HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCHH
T ss_pred             -HHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCCCCCHH
Confidence             222     26788888888888874    4565 677788888888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=1.7e-14  Score=123.46  Aligned_cols=90  Identities=20%  Similarity=0.138  Sum_probs=44.3

Q ss_pred             cCCCCCCcEEECCCCccCcccccccC-----CCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCCCCC
Q 027116          126 LSRLNNLKFLHLDFNWFNNSIFSSLG-----GLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINNPVI  196 (228)
Q Consensus       126 l~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~~~p  196 (228)
                      +..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++. .+..+++|+.|++++|.+++..+
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccH
Confidence            33345555555555555432222221     124555555555555432    222 44455666666666666655222


Q ss_pred             hhhhc-----CCCCCcEEECCCCcCC
Q 027116          197 PKDYR-----GLRKLNTLHLGGTEIA  217 (228)
Q Consensus       197 ~~~~~-----~l~~L~~L~L~~N~i~  217 (228)
                      . .+.     ..++|++|++++|+++
T Consensus       359 ~-~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          359 R-ELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             H-HHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             H-HHHHHHcCCCCceEEEECCCCCCC
Confidence            2 222     1456667777776666

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.36  E-value=3.8e-12  Score=104.62  Aligned_cols=93  Identities=15%  Similarity=0.180  Sum_probs=83.1

Q ss_pred             CCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCC-EEEcccCCCCCCCChhhhcCCCCCc
Q 027116          129 LNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLE-ELDMSDNAINNPVIPKDYRGLRKLN  207 (228)
Q Consensus       129 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~~l~~L~  207 (228)
                      +++|+.+++++|.++...+..|.++.+|+++++..| ++ .++...|.++++|+ .+++.+ .++. ++...|.++++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCC
Confidence            679999999999998666668999999999999998 76 68888999999999 999988 7776 6666999999999


Q ss_pred             EEECCCCcCCcccCCccc
Q 027116          208 TLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       208 ~L~L~~N~i~~i~~~~~~  225 (228)
                      .+++++|+++.|+..+|.
T Consensus       301 ~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFG  318 (329)
T ss_dssp             EEEECSSCCCEECTTTTC
T ss_pred             EEEeCCCccCccchhhhc
Confidence            999999999999998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=7.3e-14  Score=116.96  Aligned_cols=142  Identities=24%  Similarity=0.269  Sum_probs=103.3

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccccccc-CCCCCCcEEECCCCccCcc----cc
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRL-SRLNNLKFLHLDFNWFNNS----IF  147 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~----~~  147 (228)
                      ..++.|+|++|.+...+..    .....+++|++|++++|.++..........+ ...++|++|+|++|.++..    ++
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLR----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHH----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHH----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence            5799999999988654432    1223456889999999998765443322222 3578899999999999753    33


Q ss_pred             cccCCCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCCC----CChhhhcCCCCCcEEECCCCcCCcc
Q 027116          148 SSLGGLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINNP----VIPKDYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       148 ~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~l~~L~~L~L~~N~i~~i  219 (228)
                      ..+...++|++|+|++|.+++.    ++. .+...++|+.|+|++|.|++.    +.. .+...++|++|+|++|+|+..
T Consensus       177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCCHH
Confidence            4457788999999999999732    233 567778999999999999862    222 455678999999999999865


Q ss_pred             c
Q 027116          220 D  220 (228)
Q Consensus       220 ~  220 (228)
                      .
T Consensus       255 g  255 (372)
T 3un9_A          255 G  255 (372)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=3.6e-12  Score=104.73  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=103.6

Q ss_pred             CcEEEEEcCCCCccc--cc-----c--------cccCcccccC--------CCCCCEEeCCCCCcccccCcccccccCCC
Q 027116           73 GRVIKLDLAQIRKWE--SA-----E--------WYMNASLFTP--------FQQLESLDLTWNSIAGCVENKGLDRLSRL  129 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~--~~-----~--------~~~~~~~~~~--------l~~L~~L~ls~n~l~~~~~~~~~~~l~~l  129 (228)
                      .+++.|||++|++..  ..     .        ..++...|..        +++|+.+++.+ .++...+.+    |.++
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a----F~~~  123 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA----FKGC  123 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT----TTTC
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHH----hhcC
Confidence            457778888777751  00     0        0244556777        88888888888 777766655    7888


Q ss_pred             CCCcEEECCCCccCcccccccC----------------------------------------------------------
Q 027116          130 NNLKFLHLDFNWFNNSIFSSLG----------------------------------------------------------  151 (228)
Q Consensus       130 ~~L~~L~Ls~n~l~~~~~~~~~----------------------------------------------------------  151 (228)
                      ++|+.+++++|.+....+..|.                                                          
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD  203 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence            8888888888765322111111                                                          


Q ss_pred             --------------------CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCc-EEE
Q 027116          152 --------------------GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLN-TLH  210 (228)
Q Consensus       152 --------------------~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~-~L~  210 (228)
                                          .+++|+++++++|+++ .+|...|.++++|+.+++.+| ++. ++...|.++++|+ .++
T Consensus       204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~  280 (329)
T 3sb4_A          204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLE  280 (329)
T ss_dssp             CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEE
T ss_pred             cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEE
Confidence                                1678889999988887 788878888999999999888 666 6766888999998 999


Q ss_pred             CCCCcCCcccCCccc
Q 027116          211 LGGTEIAMIDGSKVL  225 (228)
Q Consensus       211 L~~N~i~~i~~~~~~  225 (228)
                      +.+ .++.|+..+|.
T Consensus       281 l~~-~l~~I~~~aF~  294 (329)
T 3sb4_A          281 LPA-SVTAIEFGAFM  294 (329)
T ss_dssp             ECT-TCCEECTTTTT
T ss_pred             Ecc-cceEEchhhhh
Confidence            988 88888887774

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=6.2e-15  Score=112.70  Aligned_cols=117  Identities=25%  Similarity=0.234  Sum_probs=96.1

Q ss_pred             ccCCCCCCEEeCCCCCcccccCcc--cccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENK--GLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL  175 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  175 (228)
                      +.....++.++++.+.+.+..+..  ....+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|. .+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence            445567777777777777765540  01127889999999999999986 56 7889999999999999998 7886 77


Q ss_pred             cCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          176 DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       176 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      ..+++|+.|++++|.+++ +|  .+..+++|++|++++|+|+.++.
T Consensus        90 ~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~  132 (198)
T 1ds9_A           90 AVADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGE  132 (198)
T ss_dssp             HHHHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHH
T ss_pred             hcCCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhH
Confidence            778999999999999998 54  57888999999999999998764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=9.8e-14  Score=116.18  Aligned_cols=143  Identities=15%  Similarity=0.123  Sum_probs=104.6

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccccc--
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL--  150 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--  150 (228)
                      ..++.|++++|.+...+...+........++|++|++++|.++.......   ...+++|++|+|++|.++......+  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            46889999999986544322221111234799999999999976443332   2345689999999999986554444  


Q ss_pred             ---CCCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCCCC----ChhhhcCCCCCcEEECCCCcCCcc
Q 027116          151 ---GGLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINNPV----IPKDYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       151 ---~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~~l~~L~~L~L~~N~i~~i  219 (228)
                         ...++|++|+|++|.+++.    ++. .+..+++|++|+|++|.|++..    .. .+...++|+.|+|++|.|+..
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHH
Confidence               3568999999999999732    332 4578899999999999998621    23 567778999999999999875


Q ss_pred             c
Q 027116          220 D  220 (228)
Q Consensus       220 ~  220 (228)
                      .
T Consensus       227 g  227 (372)
T 3un9_A          227 A  227 (372)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.04  E-value=4.6e-11  Score=90.26  Aligned_cols=121  Identities=19%  Similarity=0.092  Sum_probs=85.5

Q ss_pred             cccCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCccCccc----ccccCCCCCCCEEeccCccccCc--
Q 027116           97 LFTPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI----FSSLGGLSSLKHLSLFHNRLNGS--  169 (228)
Q Consensus        97 ~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~--  169 (228)
                      .+...+.|++|++++| .+...........+...++|++|+|++|.+....    ...+...++|++|+|++|.+++.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4566788888888888 8875433333334677788899999999886532    33445567899999999988732  


Q ss_pred             --cChhhhcCCCCCCEEEc--ccCCCCCCCCh---hhhcCCCCCcEEECCCCcCCc
Q 027116          170 --VDIKELDSLSNLEELDM--SDNAINNPVIP---KDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       170 --~p~~~~~~l~~L~~L~L--~~N~l~~~~p~---~~~~~l~~L~~L~L~~N~i~~  218 (228)
                        +.. .+...++|++|+|  ++|.|.+....   ..+...++|++|++++|.|..
T Consensus       111 ~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          111 LALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence              233 5667788999999  78888763211   145566889999999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.98  E-value=2.3e-11  Score=107.07  Aligned_cols=121  Identities=16%  Similarity=0.133  Sum_probs=78.0

Q ss_pred             CCCCCEEeCC----CCCcccccCccc-ccccCCCCCCcEEECCCC--ccCcccccccC-CCCCCCEEeccCccccCccCh
Q 027116          101 FQQLESLDLT----WNSIAGCVENKG-LDRLSRLNNLKFLHLDFN--WFNNSIFSSLG-GLSSLKHLSLFHNRLNGSVDI  172 (228)
Q Consensus       101 l~~L~~L~ls----~n~l~~~~~~~~-~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~  172 (228)
                      +++|++|+++    .|.+++.+.+.. ...+.++++|++|+++++  .+++..+..+. .+++|++|++++|++++....
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence            5666666664    455554321100 001345777888887643  35554444443 378899999999988753222


Q ss_pred             hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          173 KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       173 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      ..+..+++|+.|++++|.+++.........+++|++|++++|+++....
T Consensus       482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred             HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence            2567889999999999998754333245678899999999999886543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.97  E-value=3e-11  Score=96.26  Aligned_cols=81  Identities=27%  Similarity=0.277  Sum_probs=62.3

Q ss_pred             CCCCCCcEEECCCCccCc--ccccccCCCCCCCEEeccCccccCccChhhhcCCC--CCCEEEcccCCCCCCCCh-----
Q 027116          127 SRLNNLKFLHLDFNWFNN--SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLS--NLEELDMSDNAINNPVIP-----  197 (228)
Q Consensus       127 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~L~~N~l~~~~p~-----  197 (228)
                      .++++|+.|+|++|++++  .+|..+..+++|++|+|++|.+++ +.  .+..+.  +|+.|+|++|.+.+.+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-ch--hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            457899999999999987  344556688999999999999984 32  333333  899999999999876652     


Q ss_pred             -hhhcCCCCCcEEE
Q 027116          198 -KDYRGLRKLNTLH  210 (228)
Q Consensus       198 -~~~~~l~~L~~L~  210 (228)
                       ..+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             2467889998887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.92  E-value=1.7e-10  Score=87.17  Aligned_cols=120  Identities=15%  Similarity=0.089  Sum_probs=91.3

Q ss_pred             CCcEEEEEcCCC-CcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc----c
Q 027116           72 IGRVIKLDLAQI-RKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS----I  146 (228)
Q Consensus        72 ~~~v~~L~l~~n-~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~  146 (228)
                      ...+++|+|++| .+...|...+ ...+...++|++|++++|.+...........+...++|++|+|++|.|+..    +
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            467999999999 8876554332 234566789999999999998654433333366678999999999999864    3


Q ss_pred             ccccCCCCCCCEEec--cCccccCc----cChhhhcCCCCCCEEEcccCCCCC
Q 027116          147 FSSLGGLSSLKHLSL--FHNRLNGS----VDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       147 ~~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      ...+...++|++|++  ++|.++..    +.. .+...++|+.|++++|.+..
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCCh
Confidence            456777889999999  88999743    222 56667899999999998754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.88  E-value=7.5e-10  Score=97.42  Aligned_cols=108  Identities=14%  Similarity=0.038  Sum_probs=51.1

Q ss_pred             EEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc----cccccc
Q 027116           75 VIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN----SIFSSL  150 (228)
Q Consensus        75 v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~  150 (228)
                      ++.|+++++.-  .....+ ......+++|++|++++|.+++.........+..+++|++|++++|.+++    .++..+
T Consensus       140 L~~L~L~~~~~--~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~  216 (592)
T 3ogk_B          140 LETLKLDKCSG--FTTDGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA  216 (592)
T ss_dssp             CCEEEEESCEE--EEHHHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred             CcEEECcCCCC--cCHHHH-HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence            66777766541  110000 11223566666777776665443211100113345666666666666652    223333


Q ss_pred             CCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcc
Q 027116          151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMS  187 (228)
Q Consensus       151 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~  187 (228)
                      ..+++|++|++++|.+.+ ++. .+..+++|+.|+++
T Consensus       217 ~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGG  251 (592)
T ss_dssp             HHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEEC
T ss_pred             hhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhccc
Confidence            455666666666665542 332 34444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.79  E-value=2.8e-08  Score=83.83  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=72.2

Q ss_pred             cCCCCCCcEEECCCCccC-----cccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhh
Q 027116          126 LSRLNNLKFLHLDFNWFN-----NSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY  200 (228)
Q Consensus       126 l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~  200 (228)
                      |.++++|+.+++.+|.+.     ...+..|.++++|+.+++. +.++ .++...|.++++|+.+.+..| ++. +....|
T Consensus       267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~-l~~-I~~~aF  342 (401)
T 4fdw_A          267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN-VTQ-INFSAF  342 (401)
T ss_dssp             TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT-CCE-ECTTSS
T ss_pred             hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc-ccE-EcHHhC
Confidence            778888888888877664     3444578888888888888 4466 677778888888888888555 665 555578


Q ss_pred             cCCCCCcEEECCCCcCCcccCCccc
Q 027116          201 RGLRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       201 ~~l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      .++ +|+.+++++|.+..++..+|.
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~  366 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWY  366 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred             CCC-CCCEEEEcCCCCccccccccc
Confidence            888 899999999888887776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.79  E-value=4.4e-08  Score=82.65  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=13.3

Q ss_pred             cccccCCCCCCEEeCCCCCcccc
Q 027116           95 ASLFTPFQQLESLDLTWNSIAGC  117 (228)
Q Consensus        95 ~~~~~~l~~L~~L~ls~n~l~~~  117 (228)
                      ...|..+++|+.++++.|.++..
T Consensus       173 ~~aF~~c~~L~~l~l~~n~l~~I  195 (401)
T 4fdw_A          173 EDIFYYCYNLKKADLSKTKITKL  195 (401)
T ss_dssp             SSTTTTCTTCCEEECTTSCCSEE
T ss_pred             HHHhhCcccCCeeecCCCcceEe
Confidence            34566666666666666555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.77  E-value=2.2e-10  Score=100.82  Aligned_cols=118  Identities=13%  Similarity=0.170  Sum_probs=75.7

Q ss_pred             CCCCCCEEeCC--C----CCcccccCccc-ccccCCCCCCcEEECCCCccCcccccccCC-CCCCCEEeccCccccCccC
Q 027116          100 PFQQLESLDLT--W----NSIAGCVENKG-LDRLSRLNNLKFLHLDFNWFNNSIFSSLGG-LSSLKHLSLFHNRLNGSVD  171 (228)
Q Consensus       100 ~l~~L~~L~ls--~----n~l~~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p  171 (228)
                      .+++|++|+++  +    +.++..+.... ...+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++...
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence            46777777777  3    44442211110 00134567888888876 666555555544 7888999999888875433


Q ss_pred             hhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116          172 IKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       172 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      ......+++|+.|++++|.+++.........+++|++|++++|+++.
T Consensus       474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            32236688899999999988653333234557889999999988743

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.66  E-value=1.9e-08  Score=80.06  Aligned_cols=82  Identities=26%  Similarity=0.262  Sum_probs=64.4

Q ss_pred             cCCCCCCEEeCCCCCccccc--CcccccccCCCCCCcEEECCCCccCcc-cccccCCCCCCCEEeccCccccCccCh---
Q 027116           99 TPFQQLESLDLTWNSIAGCV--ENKGLDRLSRLNNLKFLHLDFNWFNNS-IFSSLGGLSSLKHLSLFHNRLNGSVDI---  172 (228)
Q Consensus        99 ~~l~~L~~L~ls~n~l~~~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~---  172 (228)
                      ..+++|+.|+|++|.+++..  +..    +..+++|+.|+|++|++++. ....+..+ +|++|+|++|.+.+.+|.   
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchh
Confidence            45789999999999999854  232    55799999999999999865 11234444 999999999999876662   


Q ss_pred             ---hhhcCCCCCCEEE
Q 027116          173 ---KELDSLSNLEELD  185 (228)
Q Consensus       173 ---~~~~~l~~L~~L~  185 (228)
                         ..+..+|+|+.||
T Consensus       242 y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          242 YISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHCTTCCEES
T ss_pred             HHHHHHHHCcccCeEC
Confidence               2477899999886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.58  E-value=2e-08  Score=88.29  Aligned_cols=14  Identities=7%  Similarity=0.015  Sum_probs=8.6

Q ss_pred             CcEEEEEcCCCCcc
Q 027116           73 GRVIKLDLAQIRKW   86 (228)
Q Consensus        73 ~~v~~L~l~~n~l~   86 (228)
                      .+++.|+++++.+.
T Consensus       105 ~~L~~L~L~~~~~~  118 (594)
T 2p1m_B          105 TWLEEIRLKRMVVT  118 (594)
T ss_dssp             TTCCEEEEESCBCC
T ss_pred             CCCCeEEeeCcEEc
Confidence            35666777666653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.49  E-value=2.2e-08  Score=83.25  Aligned_cols=136  Identities=17%  Similarity=0.170  Sum_probs=81.5

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCC--CccCcc----
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDF--NWFNNS----  145 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~--n~l~~~----  145 (228)
                      ..+++.|+++++.-    . .+.+  + .+++|++|++..+.++.......  ....+++|+.|+|+.  |...+.    
T Consensus       171 ~P~L~~L~L~g~~~----l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l--~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          171 MPLLNNLKIKGTNN----L-SIGK--K-PRPNLKSLEIISGGLPDSVVEDI--LGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CTTCCEEEEECCBT----C-BCCS--C-BCTTCSEEEEECSBCCHHHHHHH--HHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             CCCCcEEEEeCCCC----c-eecc--c-cCCCCcEEEEecCCCChHHHHHH--HHccCCCCcEEEEeccccccccchhHH
Confidence            34677777776621    0 1111  2 26778888887777654322210  013678888888753  222111    


Q ss_pred             -ccccc--CCCCCCCEEeccCccccCccChhhh---cCCCCCCEEEcccCCCCCCCChh---hhcCCCCCcEEECCCCcC
Q 027116          146 -IFSSL--GGLSSLKHLSLFHNRLNGSVDIKEL---DSLSNLEELDMSDNAINNPVIPK---DYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       146 -~~~~~--~~l~~L~~L~Ls~n~l~~~~p~~~~---~~l~~L~~L~L~~N~l~~~~p~~---~~~~l~~L~~L~L~~N~i  216 (228)
                       +...+  ..+++|++|++.+|.+.+..+. .+   ..+++|++|+|+.|.+.+.....   .+..+++|+.|++++|.|
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence             11122  2478899999988888643332 22   25678999999998887632221   234568899999999988


Q ss_pred             Cc
Q 027116          217 AM  218 (228)
Q Consensus       217 ~~  218 (228)
                      ++
T Consensus       320 ~d  321 (362)
T 2ra8_A          320 SD  321 (362)
T ss_dssp             CH
T ss_pred             CH
Confidence            75

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.30  E-value=3.5e-06  Score=70.07  Aligned_cols=120  Identities=13%  Similarity=0.226  Sum_probs=87.0

Q ss_pred             ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116           96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL  175 (228)
Q Consensus        96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  175 (228)
                      ..|..+..|+.+.+..+ ++......    |.++..|+.+.+..+ +.......|.++.+|+.+.+..+.++ .++...|
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~a----F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF  306 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFL----LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVF  306 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTT----TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccc----cceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhh
Confidence            44556666777776554 44444433    777888888888654 44344456888899999999888887 6777788


Q ss_pred             cCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116          176 DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       176 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      .++.+|+.+.+..+ ++. +....|.++.+|+.+.+..+ ++.|...+|.
T Consensus       307 ~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~  353 (379)
T 4h09_A          307 MDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPKS-ITLIESGAFE  353 (379)
T ss_dssp             TTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             cCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence            89999999998755 555 66658888999998888654 8888777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.30  E-value=1.7e-07  Score=69.73  Aligned_cols=87  Identities=17%  Similarity=0.211  Sum_probs=56.4

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCc-cCcccccccCCC----CCCCEEeccCcc-ccCccChhhh
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW-FNNSIFSSLGGL----SSLKHLSLFHNR-LNGSVDIKEL  175 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~p~~~~  175 (228)
                      ..|+.||++++.++...-..    +..+++|++|+|+++. +++..-..+..+    ++|++|++++|. +++.--. .+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-AL  135 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HG
T ss_pred             ceEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HH
Confidence            36788888888776543332    6778888888888874 665544455554    368888887774 6532112 55


Q ss_pred             cCCCCCCEEEcccCC-CCC
Q 027116          176 DSLSNLEELDMSDNA-INN  193 (228)
Q Consensus       176 ~~l~~L~~L~L~~N~-l~~  193 (228)
                      ..+++|+.|+++++. +++
T Consensus       136 ~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCEEECCCCCCCCc
Confidence            667788888887774 544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.29  E-value=3.4e-07  Score=76.11  Aligned_cols=138  Identities=17%  Similarity=0.174  Sum_probs=88.2

Q ss_pred             CcEEEEEcCCCCccccccccc----CcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccccc
Q 027116           73 GRVIKLDLAQIRKWESAEWYM----NASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS  148 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  148 (228)
                      .+++.|.+.++.........+    ....+..+++|+.|++++|.-.. .+.     +. +++|++|++..+.++.....
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-----~~-~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-----KP-RPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-----CB-CTTCSEEEEECSBCCHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-----cc-CCCCcEEEEecCCCChHHHH
Confidence            467778776653321100001    11345678999999998873111 111     32 78999999999888755444


Q ss_pred             ccC--CCCCCCEEeccC--ccccCc-----cChhhh--cCCCCCCEEEcccCCCCCCCChhhh---cCCCCCcEEECCCC
Q 027116          149 SLG--GLSSLKHLSLFH--NRLNGS-----VDIKEL--DSLSNLEELDMSDNAINNPVIPKDY---RGLRKLNTLHLGGT  214 (228)
Q Consensus       149 ~~~--~l~~L~~L~Ls~--n~l~~~-----~p~~~~--~~l~~L~~L~L~~N~l~~~~p~~~~---~~l~~L~~L~L~~N  214 (228)
                      .+.  .+++|++|+|+.  |...+.     +.. .+  ..+++|++|++.+|.+.+..+. .+   ..+++|++|+|+.|
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSS
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCC
Confidence            443  789999999864  222111     111 22  3579999999999998763333 22   25789999999999


Q ss_pred             cCCcc
Q 027116          215 EIAMI  219 (228)
Q Consensus       215 ~i~~i  219 (228)
                      .++..
T Consensus       290 ~L~d~  294 (362)
T 2ra8_A          290 VLTDE  294 (362)
T ss_dssp             CCBHH
T ss_pred             CCChH
Confidence            99873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.23  E-value=4e-07  Score=67.68  Aligned_cols=83  Identities=16%  Similarity=0.059  Sum_probs=40.1

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCC-cccccCcccccccCCC----CCCcEEECCCCc-cCcccc
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNS-IAGCVENKGLDRLSRL----NNLKFLHLDFNW-FNNSIF  147 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~  147 (228)
                      ++++||++++.++..|-.     .+..+++|++|+|++|. +++..-..    +..+    ++|++|+|+++. ++...-
T Consensus        62 ~L~~LDLs~~~Itd~GL~-----~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD-----HMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG-----GGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             eEeEEeCcCCCccHHHHH-----HhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            455566665555443331     23455556666665553 43321111    3322    245566665543 554444


Q ss_pred             cccCCCCCCCEEeccCcc
Q 027116          148 SSLGGLSSLKHLSLFHNR  165 (228)
Q Consensus       148 ~~~~~l~~L~~L~Ls~n~  165 (228)
                      ..+..+++|++|+++++.
T Consensus       133 ~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHGGGCTTCCEEEEESCT
T ss_pred             HHHhcCCCCCEEECCCCC
Confidence            445555566666665553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.15  E-value=6.9e-07  Score=67.64  Aligned_cols=116  Identities=9%  Similarity=0.044  Sum_probs=64.2

Q ss_pred             cCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCccCccccc----ccCCCCCCCEEeccCccccCc----
Q 027116           99 TPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFS----SLGGLSSLKHLSLFHNRLNGS----  169 (228)
Q Consensus        99 ~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~----  169 (228)
                      ..-+.|+.|++++| .|.......+.+.+..-+.|+.|+|++|.+......    .+..-+.|++|+|++|.|++.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44456777777764 665433333333455666777777777777543222    233446677777777777522    


Q ss_pred             cChhhhcCCCCCCEEEcccCC---CCCC----CChhhhcCCCCCcEEECCCCcC
Q 027116          170 VDIKELDSLSNLEELDMSDNA---INNP----VIPKDYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       170 ~p~~~~~~l~~L~~L~L~~N~---l~~~----~p~~~~~~l~~L~~L~L~~N~i  216 (228)
                      +-. .+.....|+.|+|++|.   +...    +.. .+..-+.|+.|+++.|.+
T Consensus       118 la~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             HHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence            212 44555667777776543   2221    111 344556777777766643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.14  E-value=5.8e-07  Score=68.06  Aligned_cols=119  Identities=10%  Similarity=0.137  Sum_probs=88.0

Q ss_pred             CCcEEEEEcCCC-CcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc----c
Q 027116           72 IGRVIKLDLAQI-RKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS----I  146 (228)
Q Consensus        72 ~~~v~~L~l~~n-~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~  146 (228)
                      ...+++|+|+++ ++...|...+ ...+..-+.|+.|+|++|.|.......+.+.+..-+.|++|+|++|.|+..    +
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            467999999986 8876565433 334567789999999999998766555555567788999999999999754    3


Q ss_pred             ccccCCCCCCCEEeccCc---cccCc----cChhhhcCCCCCCEEEcccCCCC
Q 027116          147 FSSLGGLSSLKHLSLFHN---RLNGS----VDIKELDSLSNLEELDMSDNAIN  192 (228)
Q Consensus       147 ~~~~~~l~~L~~L~Ls~n---~l~~~----~p~~~~~~l~~L~~L~L~~N~l~  192 (228)
                      .+.+..-..|++|+|++|   .+...    +.. .+...+.|+.|+++.|.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCcc
Confidence            345666778999999875   34321    222 5667789999999877643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.96  E-value=9.6e-05  Score=61.75  Aligned_cols=113  Identities=12%  Similarity=0.207  Sum_probs=84.3

Q ss_pred             cCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh
Q 027116           93 MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI  172 (228)
Q Consensus        93 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  172 (228)
                      +....|..+..|+.+.+..+-. ......    |.+++.|+.+.+.. .++......|.++.+|+.+++..+ ++ .+..
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~a----F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~  327 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVV-SIGTGA----FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILD  327 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCC-EECTTT----TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred             cccceeeecccccEEecccccc-eecCcc----cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence            3345678888899988876533 333333    78889999999864 455455567888999999999764 55 5766


Q ss_pred             hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCc
Q 027116          173 KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTE  215 (228)
Q Consensus       173 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~  215 (228)
                      ..|.++.+|+.+.+..+ ++. +....|.++++|+.+++.+|.
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCH
T ss_pred             hHhhCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCce
Confidence            68889999999999655 665 666689999999999998864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.92  E-value=0.0001  Score=61.08  Aligned_cols=120  Identities=18%  Similarity=0.193  Sum_probs=92.1

Q ss_pred             ccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhh
Q 027116           96 SLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKEL  175 (228)
Q Consensus        96 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  175 (228)
                      ..+.....|+.+.+..+ ++......    +..+..|+.+.+..+ ++......+..+.+|+.+.+..+ ++ .++...|
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~----f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF  282 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGA----FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLC  282 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTT----TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTT
T ss_pred             cccccccccceeeeccc-eeEEcccc----ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccc
Confidence            34555667777777554 33333333    788899999999776 55455567888999999998654 54 5777689


Q ss_pred             cCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116          176 DSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       176 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      ..+++|+.+.+.++.++. ++...|.++.+|+.+.+..+ ++.|+..+|.
T Consensus       283 ~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  330 (379)
T 4h09_A          283 SGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK  330 (379)
T ss_dssp             TTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             ccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence            999999999999998887 66669999999999999754 8889888874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.84  E-value=8.8e-05  Score=61.99  Aligned_cols=112  Identities=12%  Similarity=0.200  Sum_probs=80.5

Q ss_pred             cCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh
Q 027116           93 MNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI  172 (228)
Q Consensus        93 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  172 (228)
                      +....|..+..|+.+.+. +.++......    |.++.+|+.+++..+ ++......|.++.+|+.+.+..+ ++ .+..
T Consensus       279 I~~~aF~~c~~L~~i~l~-~~i~~I~~~a----F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~  350 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEFS-SRITELPESV----FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPE  350 (394)
T ss_dssp             ECTTTTTTCTTCCEEECC-TTCCEECTTT----TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCG
T ss_pred             ecCcccccccccccccCC-CcccccCcee----ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhH
Confidence            445678889999999996 4566655555    999999999999865 55455568999999999999755 66 6887


Q ss_pred             hhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcC
Q 027116          173 KELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       173 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i  216 (228)
                      ..|.++.+|+.+++.++....   . .+....+|+.+.+..|.+
T Consensus       351 ~aF~~C~~L~~i~~~~~~~~~---~-~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          351 SAFSNCTALNNIEYSGSRSQW---N-AISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GGGTTCTTCCEEEESSCHHHH---H-TCBCCCCC----------
T ss_pred             hHhhCCCCCCEEEECCceeeh---h-hhhccCCCCEEEeCCCCE
Confidence            799999999999998875431   2 566778898888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.75  E-value=0.00012  Score=61.14  Aligned_cols=88  Identities=10%  Similarity=0.127  Sum_probs=59.1

Q ss_pred             cCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCC
Q 027116          126 LSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRK  205 (228)
Q Consensus       126 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~  205 (228)
                      |..+.+|+.+.+.++ ++......|.++.+|+.+++..+ ++ .+....|.++.+|+.+++..+ ++. +....|.++++
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~  367 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCIN  367 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTT
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCC
Confidence            566777777777654 44344456777788888887644 55 566667777888888888666 555 55557778888


Q ss_pred             CcEEECCCCcCCcc
Q 027116          206 LNTLHLGGTEIAMI  219 (228)
Q Consensus       206 L~~L~L~~N~i~~i  219 (228)
                      |+.+++..+ ++.+
T Consensus       368 L~~i~lp~~-~~~~  380 (394)
T 4fs7_A          368 LKKVELPKR-LEQY  380 (394)
T ss_dssp             CCEEEEEGG-GGGG
T ss_pred             CCEEEECCC-CEEh
Confidence            888877543 4443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.67  E-value=0.00028  Score=58.94  Aligned_cols=116  Identities=16%  Similarity=0.235  Sum_probs=79.3

Q ss_pred             cccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116           97 LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD  176 (228)
Q Consensus        97 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  176 (228)
                      .|..+..++.+.+..+... .....    |..+..++.+....+.+.   ...+..+.+|+.+.+..+ ++ .++...|.
T Consensus       248 ~f~~~~~l~~~~~~~~~~~-i~~~~----F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~  317 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLR-IGGSL----FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFE  317 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCE-ECSCT----TTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTT
T ss_pred             cccccccceeEEcCCCcce-eeccc----cccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhc
Confidence            3444555555555444221 22222    555666666665554322   235778889999988765 55 57777899


Q ss_pred             CCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCCccc
Q 027116          177 SLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGSKVL  225 (228)
Q Consensus       177 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~~~~  225 (228)
                      ++.+|+.+++.++ ++. +....|.++.+|+.+.+..| ++.|+..+|.
T Consensus       318 ~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          318 SCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             TCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             CCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence            9999999999754 665 66668999999999999877 9999888875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.53  E-value=0.00019  Score=50.50  Aligned_cols=56  Identities=16%  Similarity=-0.004  Sum_probs=38.7

Q ss_pred             CEEeCCCCCcc--cccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCcccc
Q 027116          105 ESLDLTWNSIA--GCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLN  167 (228)
Q Consensus       105 ~~L~ls~n~l~--~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  167 (228)
                      ..++.+++.++  ..+..       -.++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-------lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-------FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-------CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC-------CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777888776  43322       1346788888888887665666777788888888888664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.49  E-value=0.00025  Score=49.88  Aligned_cols=55  Identities=20%  Similarity=0.082  Sum_probs=41.4

Q ss_pred             EEEcCCCCcc--cccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccC
Q 027116           77 KLDLAQIRKW--ESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFN  143 (228)
Q Consensus        77 ~L~l~~n~l~--~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  143 (228)
                      .++.++++++  ....     .   --++|++|+|++|+|+.+.+..    |..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~-----~---lp~~l~~L~Ls~N~l~~l~~~~----f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-----A---FPVDTTELVLTGNNLTALPPGL----LDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS-----C---CCTTCSEEECTTSCCSSCCTTT----GGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC-----C---CCcCCCEEECCCCcCCccChhh----hhhccccCEEEecCCCee
Confidence            6788888874  3221     1   1236889999999998877765    788889999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 7e-09
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 11/100 (11%)

Query: 91  WYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSL 150
              + S  +  + L  L L +N+I        +  +S L  L+ L    N    S  SSL
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV--SDVSSL 347

Query: 151 GGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNA 190
             L+++  LS  HN+++    +  L +L+ + +L ++D A
Sbjct: 348 ANLTNINWLSAGHNQISD---LTPLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 24/132 (18%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLS----------------RLNNLKFLHLDFNW 141
            +   +L  L L  N I+      GL  L+                 L NL +L L FN 
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 142 FNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYR 201
            ++     +  L+ L+ L   +N+++    +  L +L+N+  L    N I++        
Sbjct: 319 ISDIS--PVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLT---PLA 370

Query: 202 GLRKLNTLHLGG 213
            L ++  L L  
Sbjct: 371 NLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 20/133 (15%)

Query: 98  FTPFQQLESLDLTWNSIAGCVENKGLDRLSRL--------------NNLKFLHLDFNWFN 143
                 L  LDL  N I+      GL +L+ L                    +L+ N   
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 144 NSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGL 203
               S +  L +L +L+L+ N ++    I  + SL+ L+ L  ++N +++         L
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFANNKVSDV---SSLANL 350

Query: 204 RKLNTLHLGGTEI 216
             +N L  G  +I
Sbjct: 351 TNINWLSAGHNQI 363

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 27 CLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQ--WERVECNE--TIGRVIKLDL 80
          C  Q++ ALLQIK        L +W+     +DCC   W  V C+      RV  LDL
Sbjct: 3  CNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDL 57

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 136 HLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDN 189
            L  N    ++   L  L  L  L++  N L G   I +  +L   +    ++N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAYANN 301

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 107 LDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRL 166
           L L    +        L  L +L  +  L L     +N + +    L++L+ L +     
Sbjct: 3   LHLAHKDL------TVLCHLEQLLLVTHLDLS----HNRLRALPPALAALRCLEVLQASD 52

Query: 167 NGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG 221
           N   ++  + +L  L+EL + +N +      +      +L  L+L G  +   +G
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 5/152 (3%)

Query: 37  QIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNAS 96
            +K+     +   +    +N S     + ++  +     I               Y++ +
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 97  LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL 156
             T    L  L        G  +   L  L+ L+ L  L  D N  ++   S L  L +L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNL 197

Query: 157 KHLSLFHNRLNGSVDIKELDSLSNLEELDMSD 188
             + L +N+++   D+  L + SNL  + +++
Sbjct: 198 IEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 104 LESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFH 163
              LDL  N I    +         L NL  L L  N  +     +   L  L+ L L  
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 164 NRL 166
           N+L
Sbjct: 89  NQL 91

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 111 WNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSV 170
                    NK  D        K   L       S    L GL+ L++L L  N ++   
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--- 191

Query: 171 DIKELDSLSNLEELDMS 187
           D++ L  L NL+ L++ 
Sbjct: 192 DLRALAGLKNLDVLELF 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 10/184 (5%)

Query: 22  WWSEGCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLA 81
              +  L  E             +     ++      +       +   ++  +   D  
Sbjct: 176 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 235

Query: 82  QIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNW 141
                E  +      +        S             N+         +L+ L++    
Sbjct: 236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS--- 292

Query: 142 FNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN-PVIPKDY 200
            NN +         L+ L    N L    ++ EL    NL++L +  N +   P IP+  
Sbjct: 293 -NNKLIELPALPPRLERLIASFNHLA---EVPEL--PQNLKQLHVEYNPLREFPDIPESV 346

Query: 201 RGLR 204
             LR
Sbjct: 347 EDLR 350

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 19/142 (13%), Positives = 33/142 (23%), Gaps = 3/142 (2%)

Query: 36  LQIKHFFNGDQHLQNWVDDENYSDCCQWERVECNETIGRVIKLDLAQIRKWESAEWYMNA 95
           L +    +   +    +     +             +  +    L  + + +      N 
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

Query: 96  SLFTPFQQLESLDLTWNSIAGCVENKGL--DRLSRLNNLKFLHLDFNWFNNSIFSSLGGL 153
               P   L                  L    L+ L NL  L L  N    +I     G 
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

Query: 154 SSLKHLSLFHNRLNGSVDIKEL 175
             L    L  N    + +I   
Sbjct: 195 HLLPFAFLHGNPWLCNCEILYF 216

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.72
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.55
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.55
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.23
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.99
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.87
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.79
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.45
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.05
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.72

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=8.9e-30  Score=206.90  Aligned_cols=187  Identities=24%  Similarity=0.396  Sum_probs=162.7

Q ss_pred             CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCc--eeeeEEECCC--CCcEEEEEcCCCCcccccccccCcccccCC
Q 027116           26 GCLEQERSALLQIKHFFNGDQHLQNWVDDENYSDCC--QWERVECNET--IGRVIKLDLAQIRKWESAEWYMNASLFTPF  101 (228)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~~~~W~~~~~~~~~c--~~~gv~c~~~--~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l  101 (228)
                      -|+++|++||++||+.+.++..+++|   ..+++||  .|.||+|++.  ..||++|||+++++.  |...+ +..++++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW---~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~--g~~~l-p~~l~~L   75 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP--KPYPI-PSSLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTC---CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS--SCEEC-CGGGGGC
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcCCCC---CCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCC--CCCCC-ChHHhcC
Confidence            49999999999999999988888999   4567999  5999999863  348999999999984  33223 3568999


Q ss_pred             CCCCEEeCCC-CCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCC
Q 027116          102 QQLESLDLTW-NSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSN  180 (228)
Q Consensus       102 ~~L~~L~ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~  180 (228)
                      ++|++|++++ |++++.+|..    +.++++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|. .+..++.
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~----i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~  150 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPN  150 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTT
T ss_pred             ccccccccccccccccccccc----cccccccchhhhccccccccccccccchhhhcccccccccccccCch-hhccCcc
Confidence            9999999996 8999888776    89999999999999999998888899999999999999999988887 8999999


Q ss_pred             CCEEEcccCCCCCCCChhhhcCCCCC-cEEECCCCcCCcccCCcc
Q 027116          181 LEELDMSDNAINNPVIPKDYRGLRKL-NTLHLGGTEIAMIDGSKV  224 (228)
Q Consensus       181 L~~L~L~~N~l~~~~p~~~~~~l~~L-~~L~L~~N~i~~i~~~~~  224 (228)
                      ++.+++++|.+.+.+|. .+..+..+ +.+++++|+++......+
T Consensus       151 L~~l~l~~n~l~~~ip~-~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             CCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             cceeecccccccccccc-ccccccccccccccccccccccccccc
Confidence            99999999999988888 77777765 899999999987665443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=1.1e-18  Score=131.50  Aligned_cols=112  Identities=24%  Similarity=0.315  Sum_probs=76.0

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL  181 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  181 (228)
                      +++++|++++|+|+..++...   |..+++|++|++++|.+....+..+..+++|++|++++|+++ .+|+..|.++++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~---f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGL---FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCS---GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTC
T ss_pred             CCCCEEEeCCCCCcccccccc---cCCCceEeeeeccccccccccccccccccccceeeecccccc-ccCHHHHhCCCcc
Confidence            466777777777765333221   566777777777777777666667777777777777777776 4555467777777


Q ss_pred             CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCc
Q 027116          182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      ++|+|++|+|++ ++.+.|..+++|++|+|++|++..
T Consensus       105 ~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         105 KTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccCCccccc-cCHHHhcCCccccccccccccccc
Confidence            777777777776 554467777777777777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-18  Score=136.01  Aligned_cols=141  Identities=22%  Similarity=0.267  Sum_probs=96.0

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCc--------
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNN--------  144 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--------  144 (228)
                      ..++.|+|++|.++.     +++..|..+++|++|++++|+++....      +..+++|++|++++|+++.        
T Consensus        31 ~~l~~L~Ls~N~i~~-----l~~~~f~~l~~L~~L~L~~N~l~~l~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~l   99 (266)
T d1p9ag_          31 KDTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQSLPLLGQTL   99 (266)
T ss_dssp             TTCCEEECTTSCCSE-----EEGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCSSCCCCTTTC
T ss_pred             cCCCEEECcCCcCCC-----cCHHHhhcccccccccccccccccccc------ccccccccccccccccccccccccccc
Confidence            467788888888754     334556777777777777777765433      4456666666666666653        


Q ss_pred             ---------------ccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116          145 ---------------SIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL  209 (228)
Q Consensus       145 ---------------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L  209 (228)
                                     ..+..+..+.++++|++++|.++ .++...+..+++++.+++++|++++ ++...|..+++|++|
T Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~~~l~~L~~L  177 (266)
T d1p9ag_         100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTL  177 (266)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEE
T ss_pred             cccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccc-cCcccccccccccee
Confidence                           22233334444555555555554 4555466778889999999999988 555478889999999


Q ss_pred             ECCCCcCCcccCCcccc
Q 027116          210 HLGGTEIAMIDGSKVLI  226 (228)
Q Consensus       210 ~L~~N~i~~i~~~~~~~  226 (228)
                      +|++|+|+.||.+.+..
T Consensus       178 ~Ls~N~L~~lp~~~~~~  194 (266)
T d1p9ag_         178 LLQENSLYTIPKGFFGS  194 (266)
T ss_dssp             ECCSSCCCCCCTTTTTT
T ss_pred             ecccCCCcccChhHCCC
Confidence            99999999998876643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=7.3e-19  Score=132.39  Aligned_cols=124  Identities=23%  Similarity=0.329  Sum_probs=108.7

Q ss_pred             ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116           61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN  131 (228)
Q Consensus        61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~  131 (228)
                      |.|..|.|.+         ....++.|+|++|.|+..    +....|..+++|++|++++|.+...++..    +..+++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~----~~~~~f~~l~~L~~L~L~~N~i~~~~~~~----~~~~~~   79 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRI----SSDGLFGRLPHLVKLELKRNQLTGIEPNA----FEGASH   79 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSB----CCSCSGGGCTTCCEEECCSSCCCCBCTTT----TTTCTT
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCccc----ccccccCCCceEeeeeccccccccccccc----cccccc
Confidence            6788888864         235789999999999431    33567899999999999999999888776    899999


Q ss_pred             CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116          132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      |++|+|++|+++...+..|.++++|++|+|++|+++ .+++..|..+++|++|+|++|.+..
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCccccccccccccccc
Confidence            999999999999888888999999999999999998 6777689999999999999999886

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.2e-18  Score=132.47  Aligned_cols=134  Identities=21%  Similarity=0.193  Sum_probs=95.0

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCC
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL  153 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  153 (228)
                      ...++|.++++++..+     .. +  -+++++|+|++|.|++..+..    |.++++|++|+|++|+++. ++ .+..+
T Consensus        11 ~~~~v~C~~~~L~~iP-----~~-l--p~~l~~L~Ls~N~i~~l~~~~----f~~l~~L~~L~L~~N~l~~-l~-~~~~l   76 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALP-----PD-L--PKDTTILHLSENLLYTFSLAT----LMPYTRLTQLNLDRAELTK-LQ-VDGTL   76 (266)
T ss_dssp             TCCEEECTTSCCSSCC-----SC-C--CTTCCEEECTTSCCSEEEGGG----GTTCTTCCEEECTTSCCCE-EE-CCSCC
T ss_pred             CCeEEEccCCCCCeeC-----cC-c--CcCCCEEECcCCcCCCcCHHH----hhccccccccccccccccc-cc-ccccc
Confidence            4455788888886432     22 2  157999999999999877665    8999999999999999984 44 36789


Q ss_pred             CCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCC-----------------------CChhhhcCCCCCcEEE
Q 027116          154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNP-----------------------VIPKDYRGLRKLNTLH  210 (228)
Q Consensus       154 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-----------------------~p~~~~~~l~~L~~L~  210 (228)
                      ++|++|++++|+++ ..+. .+..+++|+.|++++|.+.+.                       ++...+..+++++.++
T Consensus        77 ~~L~~L~Ls~N~l~-~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (266)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccccccccccccc-cccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcc
Confidence            99999999999997 4554 667777777777777766552                       2222344455555556


Q ss_pred             CCCCcCCcccCCc
Q 027116          211 LGGTEIAMIDGSK  223 (228)
Q Consensus       211 L~~N~i~~i~~~~  223 (228)
                      +++|+++.++.+.
T Consensus       155 l~~N~l~~~~~~~  167 (266)
T d1p9ag_         155 LANNNLTELPAGL  167 (266)
T ss_dssp             CTTSCCSCCCTTT
T ss_pred             cccccccccCccc
Confidence            6666555555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=2.1e-17  Score=132.65  Aligned_cols=93  Identities=27%  Similarity=0.332  Sum_probs=71.4

Q ss_pred             CCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEE
Q 027116          130 NNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTL  209 (228)
Q Consensus       130 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L  209 (228)
                      ++|++|++++|..+...+..+..++.+++|++++|.++ .++...+..+++|++|+|++|+++. +|. .+..+++|++|
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~L~L~~N~L~~-lp~-~l~~l~~L~~L  247 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPG-GLADHKYIQVV  247 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCSS-CCT-TTTTCSSCCEE
T ss_pred             CccCEEECCCCcCCCCChhHhhcccccccccccccccc-ccccccccccccceeeecccccccc-ccc-ccccccCCCEE
Confidence            34555555555555555556677777888888888887 4544578888999999999999987 787 88899999999


Q ss_pred             ECCCCcCCcccCCccc
Q 027116          210 HLGGTEIAMIDGSKVL  225 (228)
Q Consensus       210 ~L~~N~i~~i~~~~~~  225 (228)
                      ++++|+|+.|+...|.
T Consensus       248 ~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         248 YLHNNNISAIGSNDFC  263 (305)
T ss_dssp             ECCSSCCCCCCTTSSS
T ss_pred             ECCCCccCccChhhcc
Confidence            9999999999876653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=8.4e-18  Score=117.70  Aligned_cols=104  Identities=23%  Similarity=0.329  Sum_probs=55.6

Q ss_pred             EEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEE
Q 027116          106 SLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELD  185 (228)
Q Consensus       106 ~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~  185 (228)
                      +|++++|+++....      +..+++|++|++++|.++ .+|+.+..+++|++|++++|.++ .+|  .+..+++|+.|+
T Consensus         2 ~L~Ls~n~l~~l~~------l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~   71 (124)
T d1dcea3           2 VLHLAHKDLTVLCH------LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELL   71 (124)
T ss_dssp             EEECTTSCCSSCCC------GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEE
T ss_pred             EEEcCCCCCCCCcc------cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeEE
Confidence            45555555554321      445555555555555555 34444555555666666665555 343  455555566666


Q ss_pred             cccCCCCCCCCh-hhhcCCCCCcEEECCCCcCCccc
Q 027116          186 MSDNAINNPVIP-KDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       186 L~~N~l~~~~p~-~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      +++|++++ ++. ..+..+++|++|++++|+++.++
T Consensus        72 l~~N~i~~-~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          72 LCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCccCC-CCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            66665554 221 24555555666666666555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.7e-17  Score=128.13  Aligned_cols=143  Identities=25%  Similarity=0.249  Sum_probs=75.0

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccc---------------------ccccCCCCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKG---------------------LDRLSRLNN  131 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~---------------------~~~l~~l~~  131 (228)
                      ..++.|+|++|+++.     +++..|..+++|++|++++|.+....+...                     ...+.++++
T Consensus        32 ~~~~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~  106 (284)
T d1ozna_          32 AASQRIFLHGNRISH-----VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (284)
T ss_dssp             TTCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCCEEECcCCcCCC-----CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhccccc
Confidence            356778888887754     334456677777777777776654332210                     112445556


Q ss_pred             CcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEEC
Q 027116          132 LKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL  211 (228)
Q Consensus       132 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L  211 (228)
                      |++|++++|.+....+..+....+|+.+++++|.++ .+|...+..+++|+.|++++|.+++ ++...|.++++|+++++
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~-l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred             CCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccc-cchhhhccccccchhhh
Confidence            666666666555444444444555555555555554 3433344445555555555555544 33224444445555555


Q ss_pred             CCCcCCcccCC
Q 027116          212 GGTEIAMIDGS  222 (228)
Q Consensus       212 ~~N~i~~i~~~  222 (228)
                      ++|+++.+++.
T Consensus       185 ~~N~l~~i~~~  195 (284)
T d1ozna_         185 HQNRVAHVHPH  195 (284)
T ss_dssp             CSSCCCEECTT
T ss_pred             hhccccccChh
Confidence            55544444433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=127.23  Aligned_cols=134  Identities=25%  Similarity=0.305  Sum_probs=107.0

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      .+++.|++++|.+..     +....+....+|+.+++++|++++.++..    |..+++|++|++++|.++...+..+.+
T Consensus       105 ~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~l~l~~N~l~~i~~~~----f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         105 GRLHTLHLDRCGLQE-----LGPGLFRGLAALQYLYLQDNALQALPDDT----FRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ccCCEEecCCccccc-----ccccccchhcccchhhhccccccccChhH----hccccchhhcccccCcccccchhhhcc
Confidence            467888888887643     23445677788888888888888776655    778888889999999888777778888


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      +++|+++++++|++++..|. .|..+++|++|++++|.+.+ ++...|..+++|++|++++|++.
T Consensus       176 l~~L~~l~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccchhhhhhccccccChh-Hhhhhhhccccccccccccc-ccccccccccccCEEEecCCCCC
Confidence            88999999999988854444 88888889999999999888 55558888888999999988876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.7e-17  Score=117.94  Aligned_cols=131  Identities=21%  Similarity=0.146  Sum_probs=97.9

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..++++|||++|+++...      ..+..+++|++|++++|.++... .     +..+++|++|++++|+++...+..+.
T Consensus        17 ~~~lr~L~L~~n~I~~i~------~~~~~l~~L~~L~Ls~N~i~~l~-~-----~~~l~~L~~L~ls~N~i~~l~~~~~~   84 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIE------NLGATLDQFDAIDFSDNEIRKLD-G-----FPLLRRLKTLLVNNNRICRIGEGLDQ   84 (162)
T ss_dssp             TTSCEEEECTTSCCCSCC------CGGGGTTCCSEEECCSSCCCEEC-C-----CCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             cCcCcEEECCCCCCCccC------ccccccccCCEEECCCCCCCccC-C-----cccCcchhhhhcccccccCCCccccc
Confidence            346788999999885532      23567888999999999888653 2     78888999999999998865555566


Q ss_pred             CCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCCh---hhhcCCCCCcEEECCCCcCCc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIP---KDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      .+++|++|++++|+++ .++. ..+..+++|++|++++|+++. .+.   ..+..+++|++||  +..|+.
T Consensus        85 ~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD--~~~i~~  151 (162)
T d1a9na_          85 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD--FQKVKL  151 (162)
T ss_dssp             HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET--TEECCH
T ss_pred             cccccccceecccccc-ccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC--CCCCCH
Confidence            7889999999999887 4442 357788899999999998876 553   2467788888887  344443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.8e-17  Score=117.91  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             cccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhc
Q 027116           97 LFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELD  176 (228)
Q Consensus        97 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  176 (228)
                      .+.+...+++|++++|+|+... ..    +..+++|++|++++|.++. + +.+..+++|++|++++|.++ .++...+.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~-~~----~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~-~l~~~~~~   84 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIE-NL----GATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQ   84 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC-CG----GGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHH
T ss_pred             hccCcCcCcEEECCCCCCCccC-cc----ccccccCCEEECCCCCCCc-c-CCcccCcchhhhhccccccc-CCCccccc
Confidence            3667788999999999998864 32    5678999999999999984 4 45899999999999999998 67764677


Q ss_pred             CCCCCCEEEcccCCCCCCCCh-hhhcCCCCCcEEECCCCcCCcccC
Q 027116          177 SLSNLEELDMSDNAINNPVIP-KDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       177 ~l~~L~~L~L~~N~l~~~~p~-~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+++|+.|++++|++++ ++. ..+..+++|++|++++|+++..+.
T Consensus        85 ~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          85 ALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             HCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cccccccceeccccccc-cccccccccccccchhhcCCCccccccc
Confidence            89999999999999998 543 368899999999999999988764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.67  E-value=3e-17  Score=132.18  Aligned_cols=142  Identities=20%  Similarity=0.237  Sum_probs=95.3

Q ss_pred             CCcEEEEEcCC-CCcccccccccCcccccCCCCCCEEeCCCCCcccccCccc--------------------ccccCCCC
Q 027116           72 IGRVIKLDLAQ-IRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKG--------------------LDRLSRLN  130 (228)
Q Consensus        72 ~~~v~~L~l~~-n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~--------------------~~~l~~l~  130 (228)
                      -..++.|++++ |++  .|.  + +..++++++|++|++++|++.+..+...                    ...+..++
T Consensus        75 L~~L~~L~Ls~~N~l--~g~--i-P~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          75 LPYLNFLYIGGINNL--VGP--I-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             CTTCSEEEEEEETTE--ESC--C-CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             Ccccccccccccccc--ccc--c-ccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc
Confidence            35788889986 677  333  2 3457888888888888888877655431                    12255566


Q ss_pred             CCcEEECCCCccCcccccccCCCCC------------------------------------------------CCEEecc
Q 027116          131 NLKFLHLDFNWFNNSIFSSLGGLSS------------------------------------------------LKHLSLF  162 (228)
Q Consensus       131 ~L~~L~Ls~n~l~~~~~~~~~~l~~------------------------------------------------L~~L~Ls  162 (228)
                      .++++++++|.+.+.+|..+..+.+                                                ++.++++
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~  229 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             ccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6666666666665555544433332                                                3333333


Q ss_pred             CccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC-cccC
Q 027116          163 HNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA-MIDG  221 (228)
Q Consensus       163 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~-~i~~  221 (228)
                      +|.+.+.+|  .+..+++|+.|++++|++++.+|. .+.++++|++|+|++|+|+ .||.
T Consensus       230 ~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         230 KNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             SSEECCBGG--GCCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccc--ccccccccccccCccCeecccCCh-HHhCCCCCCEEECcCCcccccCCC
Confidence            333332221  456678899999999999988998 8999999999999999998 6664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.3e-16  Score=116.29  Aligned_cols=129  Identities=21%  Similarity=0.333  Sum_probs=103.2

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|++....       .+..+++|++|++++|.+....+      +.++++|+.|++++|.+...  ..+.
T Consensus        61 l~nL~~L~Ls~N~l~~~~-------~l~~l~~L~~L~l~~n~~~~~~~------l~~l~~L~~L~l~~~~~~~~--~~~~  125 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDIT-------PLKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDI--DPLK  125 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG-------GGTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCC--GGGT
T ss_pred             CCCcCcCccccccccCcc-------cccCCcccccccccccccccccc------cccccccccccccccccccc--cccc
Confidence            356788888888874321       26778888888888888766443      77888888889888887643  3477


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+++|+.|++++|++. .++  .+..+++|+.|++.+|++++ ++  .+.++++|++|++++|+|++++.
T Consensus       126 ~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~-l~--~l~~l~~L~~L~ls~N~i~~i~~  189 (199)
T d2omxa2         126 NLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTD-LK--PLANLTTLERLDISSNKVSDISV  189 (199)
T ss_dssp             TCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             hhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccC-Cc--cccCCCCCCEEECCCCCCCCCcc
Confidence            8899999999999987 455  68889999999999999988 43  47899999999999999999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.7e-16  Score=108.61  Aligned_cols=118  Identities=22%  Similarity=0.232  Sum_probs=95.8

Q ss_pred             EEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCC
Q 027116           77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSL  156 (228)
Q Consensus        77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  156 (228)
                      .||+++|+++...       .+..+++|++|++++|.++..++ .    +..+++|++|++++|.++.. | .+..+++|
T Consensus         2 ~L~Ls~n~l~~l~-------~l~~l~~L~~L~ls~N~l~~lp~-~----~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L   67 (124)
T d1dcea3           2 VLHLAHKDLTVLC-------HLEQLLLVTHLDLSHNRLRALPP-A----LAALRCLEVLQASDNALENV-D-GVANLPRL   67 (124)
T ss_dssp             EEECTTSCCSSCC-------CGGGGTTCCEEECCSSCCCCCCG-G----GGGCTTCCEEECCSSCCCCC-G-GGTTCSSC
T ss_pred             EEEcCCCCCCCCc-------ccccCCCCCEEECCCCccCcchh-h----hhhhhccccccccccccccc-C-cccccccc
Confidence            6899999996422       37889999999999999987644 3    88899999999999999854 4 58999999


Q ss_pred             CEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCC--CChhhhcCCCCCcEE
Q 027116          157 KHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNP--VIPKDYRGLRKLNTL  209 (228)
Q Consensus       157 ~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~l~~L~~L  209 (228)
                      ++|++++|+++ .++. ..+..+++|+.|++++|++++.  .+......+|+|+.+
T Consensus        68 ~~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          68 QELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CeEECCCCccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999999998 4542 3688999999999999998752  233245567888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.4e-15  Score=112.59  Aligned_cols=128  Identities=22%  Similarity=0.386  Sum_probs=109.8

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      .+++.|+++++++.+..       .++.+++|++|++++|++++..+      +.++++|++|++++|.+... + .+..
T Consensus        40 ~~l~~L~l~~~~i~~l~-------~l~~l~nL~~L~Ls~N~l~~~~~------l~~l~~L~~L~l~~n~~~~~-~-~l~~  104 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID-------GVEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADI-T-PLAN  104 (199)
T ss_dssp             TTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC-G-GGTT
T ss_pred             cCCCEEECCCCCCCCcc-------ccccCCCcCcCccccccccCccc------ccCCcccccccccccccccc-c-cccc
Confidence            46889999999986432       36789999999999999988654      88999999999999998743 3 4889


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +++|++|++++|.+. .++  .+..+++|+.|++++|.+.. + . .+..+++|++|++++|+++++++
T Consensus       105 l~~L~~L~l~~~~~~-~~~--~~~~l~~L~~L~l~~n~l~~-~-~-~l~~~~~L~~L~l~~n~l~~l~~  167 (199)
T d2omxa2         105 LTNLTGLTLFNNQIT-DID--PLKNLTNLNRLELSSNTISD-I-S-ALSGLTSLQQLNFSSNQVTDLKP  167 (199)
T ss_dssp             CTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCC-C-G-GGTTCTTCSEEECCSSCCCCCGG
T ss_pred             ccccccccccccccc-ccc--ccchhhhhHHhhhhhhhhcc-c-c-cccccccccccccccccccCCcc
Confidence            999999999999997 444  68899999999999999986 4 3 58889999999999999998864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.9e-15  Score=113.87  Aligned_cols=129  Identities=28%  Similarity=0.369  Sum_probs=101.4

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..++++|++++|.++...       .++.+++|++|++++|++++...      +..+++|+.|++++|.+.. + ..+.
T Consensus        67 l~~L~~L~L~~n~i~~l~-------~~~~l~~L~~L~l~~n~i~~l~~------l~~l~~L~~L~l~~~~~~~-~-~~l~  131 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIK-------PLANLKNLGWLFLDENKVKDLSS------LKDLKKLKSLSLEHNGISD-I-NGLV  131 (210)
T ss_dssp             CTTCCEEECCSSCCCCCG-------GGTTCTTCCEEECCSSCCCCGGG------GTTCTTCCEEECTTSCCCC-C-GGGG
T ss_pred             CCCCCEEeCCCccccCcc-------ccccCcccccccccccccccccc------ccccccccccccccccccc-c-cccc
Confidence            356888888888875422       25678888888888888876432      7778888888888888763 2 3577


Q ss_pred             CCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          152 GLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      .+++++++++++|.++ ..+  .+..+++|+.+++++|.+++ ++  .+.++++|+.|++++|+|++++.
T Consensus       132 ~l~~l~~l~~~~n~l~-~~~--~~~~l~~L~~l~l~~n~l~~-i~--~l~~l~~L~~L~Ls~N~i~~l~~  195 (210)
T d1h6ta2         132 HLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQISD-IV--PLAGLTKLQNLYLSKNHISDLRA  195 (210)
T ss_dssp             GCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             cccccccccccccccc-ccc--cccccccccccccccccccc-cc--cccCCCCCCEEECCCCCCCCChh
Confidence            7888888888888887 333  57788999999999999987 44  47889999999999999998873

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=4.3e-15  Score=118.87  Aligned_cols=137  Identities=22%  Similarity=0.204  Sum_probs=112.5

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.+++++|.+....     .   ..+++|+.|++++|.++...+..    +.+++.+++|++++|.+++..+..+.+
T Consensus       150 ~~L~~l~l~~n~l~~l~-----~---~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         150 KKLSYIRIADTNITTIP-----Q---GLPPSLTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             TTCCEEECCSSCCCSCC-----S---SCCTTCSEEECTTSCCCEECTGG----GTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cccCccccccCCccccC-----c---ccCCccCEEECCCCcCCCCChhH----hhccccccccccccccccccccccccc
Confidence            45677888888774322     1   23578999999999988877765    889999999999999999888888999


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhh------cCCCCCcEEECCCCcCC--cccCCcc
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDY------RGLRKLNTLHLGGTEIA--MIDGSKV  224 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~------~~l~~L~~L~L~~N~i~--~i~~~~~  224 (228)
                      +++|++|+|++|+++ .+|. .+..+++|++|++++|+|+. ++...|      ....+|+.|++++|+++  .+++.+|
T Consensus       218 l~~L~~L~L~~N~L~-~lp~-~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f  294 (305)
T d1xkua_         218 TPHLRELHLNNNKLV-KVPG-GLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  294 (305)
T ss_dssp             STTCCEEECCSSCCS-SCCT-TTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             cccceeeeccccccc-cccc-ccccccCCCEEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHh
Confidence            999999999999998 7887 89999999999999999997 654343      35678999999999987  4555444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.1e-14  Score=110.54  Aligned_cols=128  Identities=29%  Similarity=0.320  Sum_probs=109.3

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.|+++++.+....       .+..+++|++|++++|.+++..+      +..+++|++|++++|++++ ++ .+..
T Consensus        46 ~~L~~L~l~~~~i~~l~-------~l~~l~~L~~L~L~~n~i~~l~~------~~~l~~L~~L~l~~n~i~~-l~-~l~~  110 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKD  110 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred             cCccEEECcCCCCCCch-------hHhhCCCCCEEeCCCccccCccc------cccCccccccccccccccc-cc-cccc
Confidence            35889999999985422       36789999999999999998654      7889999999999999985 44 5889


Q ss_pred             CCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccC
Q 027116          153 LSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDG  221 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~  221 (228)
                      +++|+.|++++|.+. .++  .+..+++++.+++++|.+++  +. .+..+++|+++++++|+++++++
T Consensus       111 l~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~--~~-~~~~l~~L~~l~l~~n~l~~i~~  173 (210)
T d1h6ta2         111 LKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITD--IT-VLSRLTKLDTLSLEDNQISDIVP  173 (210)
T ss_dssp             CTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ccccccccccccccc-ccc--cccccccccccccccccccc--cc-ccccccccccccccccccccccc
Confidence            999999999999997 555  68899999999999999987  33 56789999999999999998864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=4.2e-14  Score=108.48  Aligned_cols=131  Identities=24%  Similarity=0.360  Sum_probs=95.6

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc----
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF----  147 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----  147 (228)
                      ..+++.|++++|.+....       .+..+++++++++++|.++....      +..+++|+.++++++...+..+    
T Consensus        62 l~~L~~L~ls~n~i~~~~-------~l~~l~~l~~l~~~~n~~~~i~~------l~~l~~L~~l~l~~~~~~~~~~~~~~  128 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLA-------PLKNLTKITELELSGNPLKNVSA------IAGLQSIKTLDLTSTQITDVTPLAGL  128 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG-------GGTTCCSCCEEECCSCCCSCCGG------GTTCTTCCEEECTTSCCCCCGGGTTC
T ss_pred             CCCCcEeecCCceeeccc-------ccccccccccccccccccccccc------ccccccccccccccccccccchhccc
Confidence            456788888888774321       25667777777777777665322      5667777777777666543211    


Q ss_pred             ----------------cccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEEC
Q 027116          148 ----------------SSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL  211 (228)
Q Consensus       148 ----------------~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L  211 (228)
                                      ..+..+++|++|++++|.+. ..+  .+.++++|+.|++++|++++ ++  .+.++++|++|++
T Consensus       129 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~Ls~n~l~~-l~--~l~~l~~L~~L~L  202 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLT--PLANLSKLTTLKADDNKISD-IS--PLASLPNLIEVHL  202 (227)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEEC
T ss_pred             cchhhhhchhhhhchhhhhccccccccccccccccc-cch--hhcccccceecccCCCccCC-Ch--hhcCCCCCCEEEC
Confidence                            23456678999999999887 343  58899999999999999987 54  4788999999999


Q ss_pred             CCCcCCcccC
Q 027116          212 GGTEIAMIDG  221 (228)
Q Consensus       212 ~~N~i~~i~~  221 (228)
                      ++|+|+++++
T Consensus       203 s~N~lt~i~~  212 (227)
T d1h6ua2         203 KNNQISDVSP  212 (227)
T ss_dssp             TTSCCCBCGG
T ss_pred             cCCcCCCCcc
Confidence            9999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=2e-14  Score=117.81  Aligned_cols=131  Identities=25%  Similarity=0.352  Sum_probs=96.5

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccc----
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF----  147 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----  147 (228)
                      ...++.+++++|.+...+       .+..+++|+.|++++|.+++..+      +..+++|++|++++|++++..+    
T Consensus       218 ~~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~~~l~~~~~~~~~  284 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIG-------TLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISPLAGL  284 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             cCCCCEEECCCCCCCCcc-------hhhcccccchhccccCccCCCCc------ccccccCCEeeccCcccCCCCccccc
Confidence            346777888888775432       35667777777777777776544      5666777777777776654321    


Q ss_pred             ----------------cccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEEC
Q 027116          148 ----------------SSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHL  211 (228)
Q Consensus       148 ----------------~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L  211 (228)
                                      ..+..++++++|++++|++++ ++  .+..+++|+.|++++|++++ ++  .+.++++|++|++
T Consensus       285 ~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~--~l~~l~~L~~L~L~~n~l~~-l~--~l~~l~~L~~L~l  358 (384)
T d2omza2         285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-IS--PVSSLTKLQRLFFANNKVSD-VS--SLANLTNINWLSA  358 (384)
T ss_dssp             TTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CG--GGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccchhcccCeEECCCCCCCC-Cc--ccccCCCCCEEECCCCCCCC-Ch--hHcCCCCCCEEEC
Confidence                            235566788889999998874 54  57889999999999999987 44  5788999999999


Q ss_pred             CCCcCCcccC
Q 027116          212 GGTEIAMIDG  221 (228)
Q Consensus       212 ~~N~i~~i~~  221 (228)
                      ++|+|+++++
T Consensus       359 ~~N~l~~l~~  368 (384)
T d2omza2         359 GHNQISDLTP  368 (384)
T ss_dssp             CSSCCCBCGG
T ss_pred             CCCcCCCChh
Confidence            9999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.3e-14  Score=100.85  Aligned_cols=104  Identities=19%  Similarity=0.158  Sum_probs=78.3

Q ss_pred             EEEcCCCCcccccccccCcccccCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCC
Q 027116           77 KLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSS  155 (228)
Q Consensus        77 ~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  155 (228)
                      .++.+++++.+.      +..+..+++|++|++++| .++...+..    |.++++|+.|++++|+++...+..|..+++
T Consensus        12 ~l~c~~~~~~~~------p~~l~~l~~l~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3          12 GLRCTRDGALDS------LHHLPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             CEECCSSCCCTT------TTTSCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             eEEecCCCCccC------cccccCccccCeeecCCCccccccCchh----hccccccCcceeeccccCCccccccccccc
Confidence            467777776332      233566788888888765 477766655    888888888888888888777778888888


Q ss_pred             CCEEeccCccccCccChhhhcCCCCCCEEEcccCCCC
Q 027116          156 LKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAIN  192 (228)
Q Consensus       156 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~  192 (228)
                      |++|+|++|+++ .+|...+.. .+|+.|+|++|.+.
T Consensus        82 L~~L~Ls~N~l~-~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          82 LSRLNLSFNALE-SLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCS-CCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             ccceeccCCCCc-ccChhhhcc-ccccccccCCCccc
Confidence            888888888887 677744444 46888888888886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=7.1e-14  Score=114.49  Aligned_cols=127  Identities=26%  Similarity=0.387  Sum_probs=98.2

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCccc----------------ccccCCCCCCcEEE
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKG----------------LDRLSRLNNLKFLH  136 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~----------------~~~l~~l~~L~~L~  136 (228)
                      ..++.+++++|.+...+       .+..+++|++|++++|.+++..+-..                ...+..++++++|+
T Consensus       241 ~~L~~L~l~~n~l~~~~-------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~  313 (384)
T d2omza2         241 TNLTDLDLANNQISNLA-------PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT  313 (384)
T ss_dssp             TTCSEEECCSSCCCCCG-------GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred             cccchhccccCccCCCC-------cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEE
Confidence            46777888888774322       25566777777777777665432100                12256788999999


Q ss_pred             CCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCCC
Q 027116          137 LDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGT  214 (228)
Q Consensus       137 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N  214 (228)
                      +++|++++..  .+..+++|++|++++|+++ .++  .+..+++|++|++++|++++ ++  .+.++++|+.|+|++|
T Consensus       314 ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~--~l~~l~~L~~L~l~~N~l~~-l~--~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         314 LYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS--SLANLTNINWLSAGHNQISD-LT--PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCCE
T ss_pred             CCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh--hHcCCCCCCEEECCCCcCCC-Ch--hhccCCCCCEeeCCCC
Confidence            9999998653  3788999999999999998 565  68999999999999999998 54  3789999999999998

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.48  E-value=1.5e-16  Score=120.21  Aligned_cols=111  Identities=28%  Similarity=0.321  Sum_probs=57.2

Q ss_pred             ccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcC
Q 027116           98 FTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDS  177 (228)
Q Consensus        98 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~  177 (228)
                      +..+++|++|++++|.|+... .     +..+++|++|++++|.++ .+|.....+++|++|++++|.++ .++  .+..
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~-~-----l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~--~~~~  113 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS-S-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS--GIEK  113 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC-C-----HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH--HHHH
T ss_pred             HhcccccceeECcccCCCCcc-c-----ccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc--cccc
Confidence            445555566666655555432 1     445555666666655554 22322233345555666665555 332  3455


Q ss_pred             CCCCCEEEcccCCCCCCCCh-hhhcCCCCCcEEECCCCcCCcc
Q 027116          178 LSNLEELDMSDNAINNPVIP-KDYRGLRKLNTLHLGGTEIAMI  219 (228)
Q Consensus       178 l~~L~~L~L~~N~l~~~~p~-~~~~~l~~L~~L~L~~N~i~~i  219 (228)
                      +++|+.|++++|++++ ++. ..+..+++|++|++++|+++.+
T Consensus       114 l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccccchhcc-ccccccccCCCccceeecCCCccccC
Confidence            5555666666655554 321 2455555566666665555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.2e-12  Score=100.23  Aligned_cols=131  Identities=24%  Similarity=0.307  Sum_probs=105.9

Q ss_pred             CcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCC
Q 027116           73 GRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGG  152 (228)
Q Consensus        73 ~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  152 (228)
                      ..++.|++.++++.+.       ..+..+++|++|++++|.+++..+      +..+++++++++++|.++. + ..+..
T Consensus        41 ~~L~~L~l~~~~i~~l-------~~l~~l~~L~~L~ls~n~i~~~~~------l~~l~~l~~l~~~~n~~~~-i-~~l~~  105 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI-------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKN-V-SAIAG  105 (227)
T ss_dssp             HTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSC-C-GGGTT
T ss_pred             CCcCEEECCCCCCCcc-------hhHhcCCCCcEeecCCceeecccc------ccccccccccccccccccc-c-ccccc
Confidence            4688999999998542       236889999999999999988655      8899999999999999974 3 35888


Q ss_pred             CCCCCEEeccCccccCccC-------------------hhhhcCCCCCCEEEcccCCCCCCCChhhhcCCCCCcEEECCC
Q 027116          153 LSSLKHLSLFHNRLNGSVD-------------------IKELDSLSNLEELDMSDNAINNPVIPKDYRGLRKLNTLHLGG  213 (228)
Q Consensus       153 l~~L~~L~Ls~n~l~~~~p-------------------~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~  213 (228)
                      +++|++++++++...+..+                   ...+..+++|+.|++++|.+.+ . . .+.++++|++|++++
T Consensus       106 l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~-~-~l~~l~~L~~L~Ls~  182 (227)
T d1h6ua2         106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-L-T-PLANLSKLTTLKADD  182 (227)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-C-G-GGTTCTTCCEEECCS
T ss_pred             cccccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc-c-h-hhcccccceecccCC
Confidence            9999999999987652111                   1145667789999999998876 3 3 578899999999999


Q ss_pred             CcCCcccC
Q 027116          214 TEIAMIDG  221 (228)
Q Consensus       214 N~i~~i~~  221 (228)
                      |++++++.
T Consensus       183 n~l~~l~~  190 (227)
T d1h6ua2         183 NKISDISP  190 (227)
T ss_dssp             SCCCCCGG
T ss_pred             CccCCChh
Confidence            99998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-13  Score=105.92  Aligned_cols=99  Identities=18%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             ceeeeEEECC---------CCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCC
Q 027116           61 CQWERVECNE---------TIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNN  131 (228)
Q Consensus        61 c~~~gv~c~~---------~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~  131 (228)
                      |....+.|..         ....+++|++++|.++.     ++...|.++++|++|++++|.+...++...   |..++.
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~-----l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~---f~~l~~   79 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPK   79 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCE-----ECTTTTTTCTTCCEEEEESCTTCCEECSSS---EESCTT
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCc-----cChhHhhccchhhhhhhccccccceeeccc---cccccc
Confidence            5666777753         12468999999999854     445678899999999999999876544322   677888


Q ss_pred             CcEEECCC-CccCcccccccCCCCCCCEEeccCcccc
Q 027116          132 LKFLHLDF-NWFNNSIFSSLGGLSSLKHLSLFHNRLN  167 (228)
Q Consensus       132 L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  167 (228)
                      ++++.+.. |.+....+..+.++++|+++++++|.+.
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhc
Confidence            88888754 6777677777888999999999998886

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-12  Score=94.30  Aligned_cols=107  Identities=22%  Similarity=0.297  Sum_probs=83.8

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC-ccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN-WFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL  181 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  181 (228)
                      ..+.++.+++.+...+..     +..+++|++|++++| .++...+..|.++++|++|++++|+++ .+++..|..+++|
T Consensus         9 ~~~~l~c~~~~~~~~p~~-----l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L   82 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL   82 (156)
T ss_dssp             SSSCEECCSSCCCTTTTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCC
T ss_pred             CCCeEEecCCCCccCccc-----ccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccccccc
Confidence            345678888877765443     777888999999765 487666677888999999999999998 6766678889999


Q ss_pred             CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCC
Q 027116          182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIA  217 (228)
Q Consensus       182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~  217 (228)
                      ++|+|++|+++. +|...+.. .+|++|+|++|++.
T Consensus        83 ~~L~Ls~N~l~~-l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFNALES-LSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCSC-CCSTTTCS-CCCCEEECCSSCCC
T ss_pred             cceeccCCCCcc-cChhhhcc-ccccccccCCCccc
Confidence            999999999987 77745554 46889999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=3.7e-15  Score=112.36  Aligned_cols=130  Identities=21%  Similarity=0.249  Sum_probs=100.7

Q ss_pred             CCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccC
Q 027116           72 IGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLG  151 (228)
Q Consensus        72 ~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  151 (228)
                      ..+++.|++++|++...       ..+..+++|++|++++|.++...+.     ...+++|++|++++|.++..  ..+.
T Consensus        47 L~~L~~L~Ls~n~I~~i-------~~l~~l~~L~~L~Ls~N~i~~i~~~-----~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          47 LKACKHLALSTNNIEKI-------SSLSGMENLRILSLGRNLIKKIENL-----DAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             TTTCCEEECSEEEESCC-------CCHHHHTTCCEEECCEEEECSCSSH-----HHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             ccccceeECcccCCCCc-------ccccCCccccChhhccccccccccc-----cccccccccccccccccccc--cccc
Confidence            45789999999998542       2378899999999999999875432     34456899999999999853  3477


Q ss_pred             CCCCCCEEeccCccccCccCh-hhhcCCCCCCEEEcccCCCCCCCCh---------hhhcCCCCCcEEECCCCcCCc
Q 027116          152 GLSSLKHLSLFHNRLNGSVDI-KELDSLSNLEELDMSDNAINNPVIP---------KDYRGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       152 ~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~p~---------~~~~~l~~L~~L~L~~N~i~~  218 (228)
                      .+++|++|++++|+++ .++. ..+..+++|+.|++++|++....+.         ..+..+++|++||  +..|+.
T Consensus       113 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~  186 (198)
T d1m9la_         113 KLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTT
T ss_pred             ccccccccccccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCH
Confidence            8899999999999998 4542 3689999999999999988652222         0256789999987  555654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.7e-11  Score=92.27  Aligned_cols=115  Identities=17%  Similarity=0.257  Sum_probs=87.9

Q ss_pred             ceeeeEEECCCCCcEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCC
Q 027116           61 CQWERVECNETIGRVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFN  140 (228)
Q Consensus        61 c~~~gv~c~~~~~~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n  140 (228)
                      |...-..|..   +  .++.++.+++.     ++...   .+++++|++++|+++..++..    |.++++|++|++++|
T Consensus         1 ~~~~~C~C~~---~--~i~c~~~~l~~-----iP~~l---~~~l~~L~Ls~n~i~~l~~~~----f~~l~~L~~L~ls~n   63 (242)
T d1xwdc1           1 CHHRICHCSN---R--VFLCQESKVTE-----IPSDL---PRNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQN   63 (242)
T ss_dssp             CCCSSEEECS---S--EEEEESCSCSS-----CCSCS---CSCCSEEEEESCCCCEECTTT----TTTCTTCCEEEEESC
T ss_pred             CcCCcCCCcC---C--EEEEeCCCCCC-----cCCCC---CCCCCEEECcCCcCCccChhH----hhccchhhhhhhccc
Confidence            4445566753   2  56777777644     22222   257999999999999877665    899999999999999


Q ss_pred             ccCcccc-cccCCCCCCCEEeccC-ccccCccChhhhcCCCCCCEEEcccCCCCC
Q 027116          141 WFNNSIF-SSLGGLSSLKHLSLFH-NRLNGSVDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       141 ~l~~~~~-~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      .+...++ ..|..+++++++.+.. |.+. .++...+..+++|+++++++|.+..
T Consensus        64 ~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          64 DVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccceeecccccccccccccccccccccc-ccccccccccccccccccchhhhcc
Confidence            9876544 4688899999999764 6676 4555578999999999999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.07  E-value=1.2e-09  Score=87.41  Aligned_cols=124  Identities=22%  Similarity=0.247  Sum_probs=84.9

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCC
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGL  153 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  153 (228)
                      ++++||+++++++..+.         ..++|++|++++|+|+.. |..       +.+|+.|++++|.++. ++. +  .
T Consensus        39 ~l~~LdLs~~~L~~lp~---------~~~~L~~L~Ls~N~l~~l-p~~-------~~~L~~L~l~~n~l~~-l~~-l--p   97 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE---------LPPHLESLVASCNSLTEL-PEL-------PQSLKSLLVDNNNLKA-LSD-L--P   97 (353)
T ss_dssp             TCSEEECTTSCCSCCCS---------CCTTCSEEECCSSCCSSC-CCC-------CTTCCEEECCSSCCSC-CCS-C--C
T ss_pred             CCCEEEeCCCCCCCCCC---------CCCCCCEEECCCCCCccc-ccc-------hhhhhhhhhhhcccch-hhh-h--c
Confidence            46688888888754221         246788888888888754 321       4578888888888863 222 1  1


Q ss_pred             CCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh------------------hhhcCCCCCcEEECCCCc
Q 027116          154 SSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP------------------KDYRGLRKLNTLHLGGTE  215 (228)
Q Consensus       154 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~------------------~~~~~l~~L~~L~L~~N~  215 (228)
                      +.|++|++++|.+. .+|  .++.+++|+.|++++|.+.. .+.                  ..+..++.++.+++++|.
T Consensus        98 ~~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_          98 PLLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             TTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccccccc-ccc--chhhhccceeeccccccccc-cccccccccchhhccccccccccccccccceeccccccc
Confidence            46888888888887 677  45778888888888887764 221                  134456778888888888


Q ss_pred             CCcccCC
Q 027116          216 IAMIDGS  222 (228)
Q Consensus       216 i~~i~~~  222 (228)
                      +..++..
T Consensus       174 ~~~~~~~  180 (353)
T d1jl5a_         174 LKKLPDL  180 (353)
T ss_dssp             CSSCCCC
T ss_pred             ccccccc
Confidence            7766543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.99  E-value=2.5e-09  Score=85.54  Aligned_cols=101  Identities=19%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccChhhhcCCCCC
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNL  181 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L  181 (228)
                      .++++|+++++.++..+ +.       +++|++|++++|+++ .+|+.   +.+|++|++++|+++ .++.  +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~~lp-~~-------~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~--l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP-EL-------PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSCCC-SC-------CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS--C--CTTC
T ss_pred             cCCCEEEeCCCCCCCCC-CC-------CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh--h--cccc
Confidence            36899999999998743 32       578999999999998 56654   468999999999998 5653  1  2469


Q ss_pred             CEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCcccCC
Q 027116          182 EELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMIDGS  222 (228)
Q Consensus       182 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~~~  222 (228)
                      ++|++++|.+.. +|.  +..+++|++|++++|.++.++..
T Consensus       101 ~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~~~~~~~~~~  138 (353)
T d1jl5a_         101 EYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKKLPDL  138 (353)
T ss_dssp             CEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSCCCCC
T ss_pred             cccccccccccc-ccc--hhhhccceeeccccccccccccc
Confidence            999999999997 775  57789999999999998876654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.6e-10  Score=89.93  Aligned_cols=36  Identities=31%  Similarity=0.450  Sum_probs=19.7

Q ss_pred             CCCCCCEEEcccC-CCCCCCChhhhcCCCCCcEEECCC
Q 027116          177 SLSNLEELDMSDN-AINNPVIPKDYRGLRKLNTLHLGG  213 (228)
Q Consensus       177 ~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~L~~L~L~~  213 (228)
                      .+++|++|++++| .+++.... .+.++++|++|++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~-~l~~~~~L~~L~L~~  209 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSR  209 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTT
T ss_pred             ccccccccccccccCCCchhhh-hhcccCcCCEEECCC
Confidence            4556666666654 34443333 455556666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.93  E-value=1.8e-10  Score=93.02  Aligned_cols=144  Identities=19%  Similarity=0.153  Sum_probs=91.4

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCc-ccccccCCCCCCcEEECCCCccCcc----ccc
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVEN-KGLDRLSRLNNLKFLHLDFNWFNNS----IFS  148 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~  148 (228)
                      .++.+++++|.+...+...+ ...+...+.|++|++++|+++..... .....+..+++|+.|++++|.++..    +..
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l-~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             ccceeecccccccccccccc-cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            34455555555543222111 22345677889999999888653111 1112266788999999999988643    334


Q ss_pred             ccCCCCCCCEEeccCccccCccCh---hhhc--CCCCCCEEEcccCCCCCCCCh---hhh-cCCCCCcEEECCCCcCCc
Q 027116          149 SLGGLSSLKHLSLFHNRLNGSVDI---KELD--SLSNLEELDMSDNAINNPVIP---KDY-RGLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       149 ~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~--~l~~L~~L~L~~N~l~~~~p~---~~~-~~l~~L~~L~L~~N~i~~  218 (228)
                      .+...++|++|++++|.+++.-..   ..+.  ..+.|++|++++|.|+.....   ..+ .+.++|++|++++|+|.+
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            567788999999999998743111   0232  346799999999988752111   023 256789999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.2e-10  Score=96.49  Aligned_cols=64  Identities=27%  Similarity=0.303  Sum_probs=28.8

Q ss_pred             CCCCcEEECCCCccCcc----cccccC-CCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCC
Q 027116          129 LNNLKFLHLDFNWFNNS----IFSSLG-GLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       129 l~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      .++|++|+|++|.+++.    +++.+. ..+.|++|++++|.+++.    +.. .+..+++|++|++++|+|++
T Consensus       339 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCH
T ss_pred             ccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH-HHhcCCCCCEEECCCCcCCH
Confidence            34555555555555422    112221 234455555555555421    111 23344555555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.87  E-value=2.1e-10  Score=92.60  Aligned_cols=116  Identities=22%  Similarity=0.203  Sum_probs=73.0

Q ss_pred             CCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcc-----cccccCCCCCCCEEeccCccccCc----cCh
Q 027116          102 QQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNS-----IFSSLGGLSSLKHLSLFHNRLNGS----VDI  172 (228)
Q Consensus       102 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~  172 (228)
                      +.|+.+++++|.++..........+...+.|++|++++|.++..     +...+...++|++|++++|.++..    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            34444555544443221111112244567888889988888642     233466778899999999988622    222


Q ss_pred             hhhcCCCCCCEEEcccCCCCCCCCh---hhhc--CCCCCcEEECCCCcCCc
Q 027116          173 KELDSLSNLEELDMSDNAINNPVIP---KDYR--GLRKLNTLHLGGTEIAM  218 (228)
Q Consensus       173 ~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~--~l~~L~~L~L~~N~i~~  218 (228)
                       .+..+++|++|++++|.+++....   ..+.  ..+.|++|++++|+|+.
T Consensus       238 -~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         238 -ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             -HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             -cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence             567788899999999988763222   0222  24678999999998865

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7e-11  Score=85.61  Aligned_cols=88  Identities=25%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             cCCCCCCcEEECCCCccCccc--ccccCCCCCCCEEeccCccccCccChhhhcCCCCCCEEEcccCCCCCCCCh------
Q 027116          126 LSRLNNLKFLHLDFNWFNNSI--FSSLGGLSSLKHLSLFHNRLNGSVDIKELDSLSNLEELDMSDNAINNPVIP------  197 (228)
Q Consensus       126 l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~------  197 (228)
                      ...+++|++|+|++|+++...  +..+..+++|+.|++++|.++ .++........+|+.|++++|++......      
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            345788888899998887542  344667888999999999987 55543444556788999999988874432      


Q ss_pred             hhhcCCCCCcEEECCCCcC
Q 027116          198 KDYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       198 ~~~~~l~~L~~L~L~~N~i  216 (228)
                      ..+..+|+|+.||  ++++
T Consensus       140 ~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         140 AIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHTTSTTCCEET--TEEC
T ss_pred             HHHHHCCCCCEEC--cCCC
Confidence            1366788888876  4444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.7e-10  Score=94.33  Aligned_cols=115  Identities=23%  Similarity=0.215  Sum_probs=83.4

Q ss_pred             cEEEEEcCCCCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccc----ccc
Q 027116           74 RVIKLDLAQIRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI----FSS  149 (228)
Q Consensus        74 ~v~~L~l~~n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~  149 (228)
                      ++++||++++++++.+.    ...+..+++++.|+|++|.++..........+..+++|++|+|++|.++...    ...
T Consensus         3 ~l~~ld~~~~~i~~~~~----~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARW----AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEESCCCCHHHH----HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCEEEeeCCcCChHHH----HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence            68899999999965443    2235667899999999998875433333333678899999999999986422    223


Q ss_pred             cC-CCCCCCEEeccCccccCc----cChhhhcCCCCCCEEEcccCCCCC
Q 027116          150 LG-GLSSLKHLSLFHNRLNGS----VDIKELDSLSNLEELDMSDNAINN  193 (228)
Q Consensus       150 ~~-~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l~~  193 (228)
                      +. ...+|++|++++|++++.    ++. .+..+++|++|++++|.+.+
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccc-hhhccccccccccccccchh
Confidence            32 235799999999998743    233 56788999999999998764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8.1e-09  Score=81.12  Aligned_cols=135  Identities=21%  Similarity=0.231  Sum_probs=73.8

Q ss_pred             CCcEEEEEcCCC-CcccccccccCcccccCCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCC--ccCcccc
Q 027116           72 IGRVIKLDLAQI-RKWESAEWYMNASLFTPFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFN--WFNNSIF  147 (228)
Q Consensus        72 ~~~v~~L~l~~n-~l~~~~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~  147 (228)
                      ..+++.|+++++ .++..+.    ......+++|++|+++++ .++........  ....++|+.|++++.  .++....
T Consensus        94 ~~~L~~L~Ls~c~~itd~~l----~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~i~~~~l  167 (284)
T d2astb2          94 NSNLVRLNLSGCSGFSEFAL----QTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYRKNLQKSDL  167 (284)
T ss_dssp             CTTCSEEECTTCBSCCHHHH----HHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEEECCSCGGGSCHHHH
T ss_pred             CCCCcCcccccccccccccc----chhhHHHHhccccccccccccccccchhhh--cccccccchhhhcccccccccccc
Confidence            356888888884 4433222    112356788888888885 34322111000  122456777777653  2332211


Q ss_pred             c-ccCCCCCCCEEeccCcc-ccCccChhhhcCCCCCCEEEcccC-CCCCCCChhhhcCCCCCcEEECCCC
Q 027116          148 S-SLGGLSSLKHLSLFHNR-LNGSVDIKELDSLSNLEELDMSDN-AINNPVIPKDYRGLRKLNTLHLGGT  214 (228)
Q Consensus       148 ~-~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~L~~L~L~~N  214 (228)
                      . ....+++|++|++++|. +++.... .+..+++|++|++++| .+++.... .+..+++|++|+++++
T Consensus       168 ~~l~~~~~~L~~L~L~~~~~itd~~~~-~l~~~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         168 STLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccCCCchhhh-hhcccCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC
Confidence            1 22446677777776653 4433333 5666677777777764 45553333 4566677777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.5e-09  Score=78.30  Aligned_cols=107  Identities=22%  Similarity=0.157  Sum_probs=73.1

Q ss_pred             CCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCcccccccCCCCCCCEEeccCccccCccCh--hhhcCCCC
Q 027116          103 QLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIFSSLGGLSSLKHLSLFHNRLNGSVDI--KELDSLSN  180 (228)
Q Consensus       103 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~~l~~  180 (228)
                      ..+.|++++....   +.     +..+..+..++..++... .++.....+++|++|++++|+++ .++.  ..+..+++
T Consensus        23 ~~~~Ldls~l~~~---~~-----l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~   92 (162)
T d1koha1          23 SQQALDLKGLRSD---PD-----LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPN   92 (162)
T ss_dssp             SSCCBCCCCCSSC---TT-----TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTT
T ss_pred             hhCeeecccCCCC---ch-----hhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCcccc-CCchhHHHHhhCCc
Confidence            4555676665432   11     344444444555554433 34444567899999999999998 4442  25678999


Q ss_pred             CCEEEcccCCCCCCCChhhhcCCCCCcEEECCCCcCCccc
Q 027116          181 LEELDMSDNAINNPVIPKDYRGLRKLNTLHLGGTEIAMID  220 (228)
Q Consensus       181 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~i~~i~  220 (228)
                      |+.|++++|.|+. ++...+.....|+.|++++|+++...
T Consensus        93 L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          93 LKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             CCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             ccccccccCcccc-chhhhhhhccccceeecCCCCcCcCc
Confidence            9999999999998 55434445568999999999998653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.45  E-value=6.7e-08  Score=69.78  Aligned_cols=114  Identities=9%  Similarity=-0.010  Sum_probs=65.8

Q ss_pred             CCCCCCEEeCCCC-CcccccCcccccccCCCCCCcEEECCCCccCcccc----cccCCCCCCCEEeccCccccCc----c
Q 027116          100 PFQQLESLDLTWN-SIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF----SSLGGLSSLKHLSLFHNRLNGS----V  170 (228)
Q Consensus       100 ~l~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~----~  170 (228)
                      +.+.|+.|+++++ .++...-...+..+...++|++|+|++|.++....    +.+...+.|++|++++|.+++.    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4466777777653 35433222223335666777777777777753222    2334456777777777777632    1


Q ss_pred             ChhhhcCCCCCCEEEcccCCCCCCCCh-------hhhcCCCCCcEEECCCCc
Q 027116          171 DIKELDSLSNLEELDMSDNAINNPVIP-------KDYRGLRKLNTLHLGGTE  215 (228)
Q Consensus       171 p~~~~~~l~~L~~L~L~~N~l~~~~p~-------~~~~~l~~L~~L~L~~N~  215 (228)
                      -. .+...++|+.|++++|.+.. +..       ..+...++|+.|+++.+.
T Consensus        93 ~~-aL~~n~sL~~L~l~~n~~~~-~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LR-STLVTQSIVEFKADNQRQSV-LGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HH-HTTTTCCCSEEECCCCSSCC-CCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HH-HHHhCCcCCEEECCCCcCCC-ccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            11 45566778888887776554 211       134455777777776653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.25  E-value=1.9e-07  Score=67.30  Aligned_cols=117  Identities=10%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             CCcEEEEEcCCC-CcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccc----
Q 027116           72 IGRVIKLDLAQI-RKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI----  146 (228)
Q Consensus        72 ~~~v~~L~l~~n-~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----  146 (228)
                      ...+++|+|+++ .++..+...+ ...+...+.|++|++++|.++..........+...+.|++|+|++|.++...    
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l-~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHH-HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            357999999974 4654333222 2346677899999999999976544443344667889999999999997542    


Q ss_pred             ccccCCCCCCCEEeccCccccCccC-------hhhhcCCCCCCEEEcccCC
Q 027116          147 FSSLGGLSSLKHLSLFHNRLNGSVD-------IKELDSLSNLEELDMSDNA  190 (228)
Q Consensus       147 ~~~~~~l~~L~~L~Ls~n~l~~~~p-------~~~~~~l~~L~~L~L~~N~  190 (228)
                      ...+...++|++|++++|.+. .+.       ...+...++|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            335677889999999998765 221       1245667899999997664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.05  E-value=5.1e-07  Score=64.78  Aligned_cols=117  Identities=20%  Similarity=0.102  Sum_probs=70.7

Q ss_pred             cCCCCCCEEeCCC-CCcccccCcccccccCCCCCCcEEECCCCccCcccc----cccCCCCCCCEEeccCccccCc----
Q 027116           99 TPFQQLESLDLTW-NSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSIF----SSLGGLSSLKHLSLFHNRLNGS----  169 (228)
Q Consensus        99 ~~l~~L~~L~ls~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~----  169 (228)
                      .+.+.|++|++++ +.++...-......+...++|++|++++|.++....    ..+...++++.+++++|.++..    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4557778888876 445543332333346677788888888887764322    2344567788888888877532    


Q ss_pred             cChhhhcCCCCCCEEEc--ccCCCCCCCCh---hhhcCCCCCcEEECCCCcC
Q 027116          170 VDIKELDSLSNLEELDM--SDNAINNPVIP---KDYRGLRKLNTLHLGGTEI  216 (228)
Q Consensus       170 ~p~~~~~~l~~L~~L~L--~~N~l~~~~p~---~~~~~l~~L~~L~L~~N~i  216 (228)
                      +.. .+...++|+.++|  ++|.+.+....   ..+...+.|+.|+++.+..
T Consensus        94 l~~-~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHH-HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            112 4566677876555  45566542111   1455677888888876653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.72  E-value=2.4e-06  Score=61.11  Aligned_cols=118  Identities=14%  Similarity=0.065  Sum_probs=82.7

Q ss_pred             CCcEEEEEcCC-CCcccccccccCcccccCCCCCCEEeCCCCCcccccCcccccccCCCCCCcEEECCCCccCccc----
Q 027116           72 IGRVIKLDLAQ-IRKWESAEWYMNASLFTPFQQLESLDLTWNSIAGCVENKGLDRLSRLNNLKFLHLDFNWFNNSI----  146 (228)
Q Consensus        72 ~~~v~~L~l~~-n~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----  146 (228)
                      ...+++|++++ +.++..+... -...+...++|++|++++|.++..........+...+.++.+++++|.++...    
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~-l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKA-CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHH-HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHH-HHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            35788999998 4565433221 23345678999999999999976554444444677899999999999986542    


Q ss_pred             ccccCCCCCCCEEec--cCccccCc----cChhhhcCCCCCCEEEcccCCC
Q 027116          147 FSSLGGLSSLKHLSL--FHNRLNGS----VDIKELDSLSNLEELDMSDNAI  191 (228)
Q Consensus       147 ~~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~~l~~L~~L~L~~N~l  191 (228)
                      ...+...++|+.++|  ++|.+...    +.. .+...++|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCC
Confidence            245677888998666  46667521    322 566789999999977653