Citrus Sinensis ID: 027140

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSANWK
Secondary Structure (PSIPRED)
cEEEEEcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEcHHHHHHHcEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccHHHcccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcEEEEEEccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mhvvpvqlplistlskirlsvppdlrplDARQSILLAVQELEsrfpqglpklnpvkdmkiedpevVDLVNQIEELEHKlfahplnksqdenQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFngtfndldhHQVAALAscfipvdkssEQINLRMELAKPLQQLQESARKIAEVYKMSANWK
Flexible Loop (DISEMBL)
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELEsrfpqglpklnpvkdmkiEDPEVVDLVNQIEELEHKLFahplnksqdeNQIRCFQRKAEVNHEIQqlkskmrdsqiQKFRDELKNRSRVLKKlghinadgvvqlKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSANWK
Low Complexity Region (SEG)
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSANWK
Disordered region (IsUnstruct)
*****VQLPLISTLSKIRLSVP**LRPLDARQSILLAVQEL*********************PEVVDLVNQIEELEHKLFAH***********************************************RVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDK************************************
Disordered Region (DISOPRED)
MHVVPVQLPLISTLSKIRLSV************************PQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKS*M*****QKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDK************KPLQQLQESARKIAEVYKMS****
Disordered Region (DISEMBL)
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSANWK
Disordered Region (DISPRO)
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSAN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRxxxxxxxxxxxxxxxxxxxxxKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSANWK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q9CZU3	1040	Superkiller viralicidic a	yes	no	0.964	0.210	0.445	9e-51
P42285	1042	Superkiller viralicidic a	yes	no	0.964	0.210	0.440	2e-50
O14232	1117	ATP-dependent RNA helicas	yes	no	0.982	0.199	0.404	6e-39
P47047	1073	ATP-dependent RNA helicas	yes	no	0.973	0.205	0.405	1e-37
Q23223	1026	mRNA transport homolog 4	yes	no	0.947	0.209	0.345	1e-29
O13799	1030	Uncharacterized helicase	no	no	0.947	0.208	0.340	2e-25
Q15477	1246	Helicase SKI2W OS=Homo sa	no	no	0.801	0.146	0.293	7e-12
O59801	1213	Putative ATP-dependent RN	no	no	0.704	0.131	0.265	5e-09
P35207	1287	Antiviral helicase SKI2 O	no	no	0.511	0.090	0.317	6e-06

>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1

 Score =  199 bits (507), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 98/220 (44%), Positives = 149/220 (67%), Gaps = 1/220 (0%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 724 MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGI 783

Query: 61  EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
           +D  +  ++ ++E  EH++++HPL N    E      +RKA++  +I+  K +++ ++  
Sbjct: 784 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKARTV 843

Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
              DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL   Q 
Sbjct: 844 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQA 903

Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
            AL SCF+  + SSE   L  +LA PL+Q+QE A++IA+V
Sbjct: 904 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 943

May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/220 (44%), Positives = 149/220 (67%), Gaps = 1/220 (0%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 726 MQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGI 785

Query: 61  EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
           +D  +  ++ ++E  EH++++HPL N    E      ++KA++  +I+  K +++ ++  
Sbjct: 786 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 845

Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
              DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL   Q 
Sbjct: 846 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 905

Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
            AL SCF+  + SSE   L  +LA PL+Q+QE A++IA+V
Sbjct: 906 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 945

May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1

 Score =  160 bits (405), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 143/225 (63%), Gaps = 2/225 (0%)

Query: 1    MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
              VVP  L  +  ++ IR+ +P DL+    + ++  A+ E++ RFP+G+  L+PV++M I
Sbjct: 800  FEVVPFLLSSLDGIAHIRVFLPNDLKSQGQKLTVGKALSEVKRRFPEGITLLDPVENMNI 859

Query: 61   EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
            ++P  + L+ ++  LE +L ++PL N S+ E +   + RK  +  E++ LK K+  ++  
Sbjct: 860  KEPTFIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKARSI 919

Query: 120  KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
               DEL +R RVL++LG   +D V+++KGR AC I +GD LL+TEL+FNG FNDL   Q 
Sbjct: 920  MQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGMFNDLTPEQC 979

Query: 180  AALASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEVYKMS 223
            AAL SC +  +KS  E   ++ ELA PL+ LQE AR+IA+V K S
Sbjct: 980  AALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKES 1024

Component of the TRAMP complex which has a poly(A) RNA polymerase activity and is involved in a post-transcriptional quality control mechanism limiting inappropriate expression of genetic information. Polyadenylation is required for the degradative activity of the exosome on several of its nuclear RNA substrates (By similarity). Required for heterochromatic gene silencing at centromeric repeats by either exosome- or RNAi-mediated degradation of heterochromatic transcripts.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 147/222 (66%), Gaps = 1/222 (0%)

Query: 3   VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
           V+P+ L  I ++  +RL +P D+R    ++++  +++E+  RFP G+P L+PVK+MKIED
Sbjct: 759 VIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 818

Query: 63  PEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKF 121
            + + L+ +I+ L  KL ++PL  S    ++   + RK +++ +++QLK K+ +SQ    
Sbjct: 819 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ 878

Query: 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
            D+L+ R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L   Q AA
Sbjct: 879 LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAA 938

Query: 182 LASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMS 223
           L SCF   ++  E   L+ ELA+PL+ ++E A KIA++ K S
Sbjct: 939 LLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDS 980

ATP-dependent RNA helicase required for the 3'-end formation of 5.8S RNA. Cofactor for the exosome complex that unwinds secondary structure in pre-rRNA. Required for nucleocytoplasmic transport of mRNA. May serve as a chaperone which translocates or normalizes the structure of mRNAs in preparation for export. Component of the TRAMP complex which has a poly(A) RNA polymerase activity and is involved in a post-transcriptional quality control mechanism limiting inappropriate expression of genetic information. Polyadenylation is required for the degradative activity of the exosome on several of its nuclear RNA substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 123/217 (56%), Gaps = 2/217 (0%)

Query: 4   VPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDP 63
           VP+ +  I+ +S +RL VP D+   D +  +   +     RF   +P L+P++DM+I+  
Sbjct: 714 VPMTIDRITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTV 773

Query: 64  EVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKFR 122
           E+ +L+ + + LE +L  H + K  +   ++  F++K +   E+  LK++ +  Q     
Sbjct: 774 EMKELIAREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHL 833

Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 182
           +EL NR RVL++LG++  D  + LKG  AC +   DEL++TE++  G FN LD  Q AAL
Sbjct: 834 EELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAAL 893

Query: 183 ASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
            SCF+  DK +    L  EL   L +L E AR +A+V
Sbjct: 894 LSCFVFQDKCAAP-KLATELQTCLSELHEQARNVAKV 929

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 3   VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
           +V V L  +  +S IR+ +P +L   +++      V E+   F + +P L+P++ M IE 
Sbjct: 716 IVSVLLTAVCNISSIRIYMPRELNSNESKLRAYRRVNEVIEEFKE-IPYLDPLEHMHIES 774

Query: 63  PEVVDLVNQIEELEHKLFAHPLNK-SQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ-IQK 120
             +   + ++E LE KLF  P  K S+   +   F++K  +  +I+ + +K+ +++ I +
Sbjct: 775 STLSLSLRKLEILEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQ 834

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
            R ELK R RVL++LG    + V+ +KGR AC I +GDELL+ EL+F G FN +   ++A
Sbjct: 835 LR-ELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIA 893

Query: 181 ALASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEV 219
           A  SCF+  DKS    +NL+    K    + E+A++IA V
Sbjct: 894 AALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATV 933

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 102/194 (52%), Gaps = 12/194 (6%)

Query: 33   SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL-FAHPLNKSQ 88
            ++  AVQEL       P G P L+PV D++++D  VV+   +  +LE  +  A  ++  +
Sbjct: 960  AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 1019

Query: 89   DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
               Q    + + ++  E+++L+  + D  +     E   R  VL+ LG+++  G V+L G
Sbjct: 1020 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLL-LPEYHQRVEVLRTLGYVDEAGTVKLAG 1078

Query: 149  RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
            R AC + +  ELL+TELMF+   + L   ++AAL S   C  P D   +  N    L + 
Sbjct: 1079 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPN---TLKQG 1134

Query: 206  LQQLQESARKIAEV 219
            +++++  A++I EV
Sbjct: 1135 IERVRAVAKRIGEV 1148

Helicase; has ATPase activity. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 2/162 (1%)

Query: 59   KIEDPEVVDLVNQIEELEHKLFAHPLNKSQDE-NQIRCFQRKAEVNHEIQQLKSKMRDSQ 117
            K+ D E  +   +   L++KL  +P+  + +         ++ E+   I  L S + D  
Sbjct: 954  KVRDFEFCEAFEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQN 1013

Query: 118  IQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 177
            ++   D  + R +VL++LG+I+A+  V LKGR AC I++  EL++TEL+   +  D    
Sbjct: 1014 LELLPD-YEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCE 1072

Query: 178  QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
            +  AL S F+  +K+  +  +   L K  + +   A K+ ++
Sbjct: 1073 ETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQI 1114

RNA helicase component of the SKI complex involved in 3'-mRNA degradation pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 102  VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELL 161
            +  +I++L   M D  +    D  K R  VLK    I+ +  V LKGR AC I++G EL+
Sbjct: 1070 IKKKIEELYHLMSDQNLSLLPDYEK-RLAVLKDTEFIDQNHNVLLKGRVACEINSGYELV 1128

Query: 162  VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ----INLRMELAKPLQQLQESARKIA 217
            +TEL+ +      +  ++ AL S F+   K+ E+    +  R  LAK  Q+++E  +K+ 
Sbjct: 1129 LTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPR--LAKGKQRIEEIYKKML 1186

Query: 218  EVY 220
             V+
Sbjct: 1187 CVF 1189

RNA helicase component of the SKI complex involved in 3'-mRNA degradation pathway. Represses dsRNA virus propagation by specifically blocking translation of viral mRNAs, perhaps recognizing the absence of CAP or poly(A). Essential for cell growth only in the presence of M1 replicon.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
359484919	995	PREDICTED: superkiller viralicidic activ	0.964	0.220	0.885	1e-110
297736019	938	unnamed protein product [Vitis vinifera]	0.964	0.233	0.885	1e-110
255581147	962	helicase, putative [Ricinus communis] gi	0.964	0.227	0.890	1e-109
224087335	985	predicted protein [Populus trichocarpa]	0.964	0.222	0.876	1e-109
356523685	976	PREDICTED: superkiller viralicidic activ	0.964	0.224	0.826	1e-104
357520641	984	ATP-dependent RNA helicase DOB1 [Medicag	0.964	0.222	0.835	1e-104
297831726	984	HUA enhancer 2 [Arabidopsis lyrata subsp	0.964	0.222	0.840	1e-104
449470374	1014	PREDICTED: superkiller viralicidic activ	0.964	0.215	0.817	1e-103
356513235	982	PREDICTED: LOW QUALITY PROTEIN: superkil	0.964	0.223	0.821	1e-103
18396436	995	RNA helicase, ATP-dependent, SK12/DOB1 p	0.964	0.220	0.831	1e-103

>gi|359484919|ref|XP_002266524.2| PREDICTED: superkiller viralicidic activity 2-like 2-like [Vitis vinifera]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/219 (88%), Positives = 209/219 (95%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQL LIS LSK+R+S+PPDLRPL+ARQSILLAVQEL +RFPQGLPKLNPVKDM I
Sbjct: 679 MHVVPVQLSLISALSKLRISIPPDLRPLEARQSILLAVQELGTRFPQGLPKLNPVKDMGI 738

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
           EDPE V+L NQIEELE KLFAHPL+KSQDENQIR FQRKAEVNHEIQQLK+KMRDSQ+QK
Sbjct: 739 EDPEFVELANQIEELEQKLFAHPLHKSQDENQIRSFQRKAEVNHEIQQLKTKMRDSQLQK 798

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FRDELKNRSRVLKKLGHI+ADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 799 FRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 858

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIP DKS+EQI+LR ELAKPLQQLQ+SAR+IAE+
Sbjct: 859 ALASCFIPGDKSTEQIHLRTELAKPLQQLQDSARRIAEI 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736019|emb|CBI24057.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/219 (88%), Positives = 209/219 (95%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQL LIS LSK+R+S+PPDLRPL+ARQSILLAVQEL +RFPQGLPKLNPVKDM I
Sbjct: 622 MHVVPVQLSLISALSKLRISIPPDLRPLEARQSILLAVQELGTRFPQGLPKLNPVKDMGI 681

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
           EDPE V+L NQIEELE KLFAHPL+KSQDENQIR FQRKAEVNHEIQQLK+KMRDSQ+QK
Sbjct: 682 EDPEFVELANQIEELEQKLFAHPLHKSQDENQIRSFQRKAEVNHEIQQLKTKMRDSQLQK 741

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FRDELKNRSRVLKKLGHI+ADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 742 FRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 801

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIP DKS+EQI+LR ELAKPLQQLQ+SAR+IAE+
Sbjct: 802 ALASCFIPGDKSTEQIHLRTELAKPLQQLQDSARRIAEI 840

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581147|ref|XP_002531387.1| helicase, putative [Ricinus communis] gi|223529017|gb|EEF31007.1| helicase, putative [Ricinus communis]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/219 (89%), Positives = 209/219 (95%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQLPLIS LSK+R+SVP DLRPL+ARQSILLAVQEL +RFP GLPKLNPVKDMKI
Sbjct: 671 MHVVPVQLPLISALSKVRISVPSDLRPLEARQSILLAVQELGTRFPDGLPKLNPVKDMKI 730

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
           EDPE+VDLVNQIE +E KL AHPL+KSQD NQIR FQRKAEVNHEIQQLKSKMRDSQ+QK
Sbjct: 731 EDPEIVDLVNQIENMEKKLHAHPLHKSQDMNQIRNFQRKAEVNHEIQQLKSKMRDSQLQK 790

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FRDELKNRSRVLK+LGHI+ADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 791 FRDELKNRSRVLKRLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 850

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIPVDKS+EQI+LR ELAKPLQQLQESARK+AE+
Sbjct: 851 ALASCFIPVDKSNEQIHLRSELAKPLQQLQESARKVAEI 889

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087335|ref|XP_002308126.1| predicted protein [Populus trichocarpa] gi|222854102|gb|EEE91649.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/219 (87%), Positives = 209/219 (95%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQLPLI  LSK+R+S+P DLRPL+ARQSILLAVQEL +RFP+GLPKLNPVKDMKI
Sbjct: 669 MHVVPVQLPLICALSKVRISIPADLRPLEARQSILLAVQELGNRFPEGLPKLNPVKDMKI 728

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
           EDPE+V+LVNQIEELE KL AHPLNKSQD NQ++ F RKAEVNHEIQQLKSKMRDSQ+QK
Sbjct: 729 EDPEIVELVNQIEELEQKLHAHPLNKSQDINQMKSFHRKAEVNHEIQQLKSKMRDSQLQK 788

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FR+ELKNRSRVLK+LGHI+ADGVVQ+KGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 789 FREELKNRSRVLKRLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 848

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIPVDKSSEQI+LR ELAKPLQQLQESARKIAE+
Sbjct: 849 ALASCFIPVDKSSEQIHLRTELAKPLQQLQESARKIAEI 887

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523685|ref|XP_003530466.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/219 (82%), Positives = 206/219 (94%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQLPLIS L ++R+S+PPDLRPL+ARQSILLAVQEL +RFPQGLPKLNPVKDM +
Sbjct: 660 MHVVPVQLPLISALGQLRVSIPPDLRPLEARQSILLAVQELGNRFPQGLPKLNPVKDMDV 719

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
            D E+V+LVNQ+EELE KLF HP++K QD +QI+CF+RKAEVNHE+QQLK+KMRDSQ+QK
Sbjct: 720 RDSEIVELVNQVEELEKKLFTHPMHKHQDMDQIKCFERKAEVNHEVQQLKTKMRDSQLQK 779

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FR+ELKNRSRVLKKLGHI+ADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 780 FREELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 839

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIP DKS+EQI LR ELA+PLQQLQ+SAR+IAE+
Sbjct: 840 ALASCFIPGDKSTEQIQLRTELARPLQQLQDSARRIAEI 878

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520641|ref|XP_003630609.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula] gi|355524631|gb|AET05085.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/219 (83%), Positives = 206/219 (94%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQLPLIS LSK+R+ VPPDLRPL+ARQSILLAVQEL +RFPQGLPKLNPVKDM +
Sbjct: 668 MHVVPVQLPLISALSKLRIYVPPDLRPLEARQSILLAVQELGNRFPQGLPKLNPVKDMDV 727

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
            D E+V+LVNQIEELE KLF HP++K QD +QI+CF+RKAEVNHEIQQLK+KMRDSQ+QK
Sbjct: 728 RDSEIVELVNQIEELEKKLFDHPMHKIQDVDQIKCFERKAEVNHEIQQLKAKMRDSQLQK 787

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FR+ELKNRSRVLKKLGHI++D VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 788 FREELKNRSRVLKKLGHIDSDSVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 847

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIP++KSSEQI LR ELA+PLQQLQ+SAR+IAE+
Sbjct: 848 ALASCFIPIEKSSEQIQLRSELARPLQQLQDSARRIAEI 886

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831726|ref|XP_002883745.1| HUA enhancer 2 [Arabidopsis lyrata subsp. lyrata] gi|297329585|gb|EFH60004.1| HUA enhancer 2 [Arabidopsis lyrata subsp. lyrata]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/219 (84%), Positives = 205/219 (93%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQLPLIS LS++R+SVP DLRP++ARQSILLAVQEL SRFP G PKL+PVKDM I
Sbjct: 668 MHVVPVQLPLISALSRLRISVPSDLRPVEARQSILLAVQELSSRFPLGFPKLHPVKDMNI 727

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
           +D E+VDLV+ IEE+E KL AHP++KSQD+ QI+ FQRKAEVN+EIQQLKSKMRDSQ+QK
Sbjct: 728 QDTEIVDLVSHIEEVEQKLLAHPMHKSQDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQK 787

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FRDELKNRSRVLKKLGHI+ADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 788 FRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 847

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIPVDKS+EQ+NLR EL KPLQQLQ+SARKIAE+
Sbjct: 848 ALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEI 886

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470374|ref|XP_004152892.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis sativus]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/219 (81%), Positives = 207/219 (94%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQLPLIS LSK+R+S+P DLRP++AR+SILLA++EL +RFPQG PKLNPVKDM I
Sbjct: 698 MHVVPVQLPLISALSKLRISIPSDLRPVEARESILLALEELGTRFPQGFPKLNPVKDMNI 757

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
           EDPE+V+LV QIEELE KL+AHPL+KS++ +Q++CFQRKAEVNHEIQ LK+KMRDSQ+QK
Sbjct: 758 EDPEIVELVKQIEELERKLYAHPLHKSREVDQMKCFQRKAEVNHEIQILKNKMRDSQLQK 817

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FRDELKNRSRVLKKLGH++ADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQ+A
Sbjct: 818 FRDELKNRSRVLKKLGHVDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIA 877

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIP DKS+EQI LR ELA+PLQQLQ+SAR+IAE+
Sbjct: 878 ALASCFIPGDKSNEQIQLRTELARPLQQLQDSARRIAEI 916

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513235|ref|XP_003525319.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity 2-like 2-like [Glycine max]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/219 (82%), Positives = 205/219 (93%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQLPLIS L ++R+S+PPDLRPL+ARQSILLAVQ L +RFPQGLPKLNPVKDM +
Sbjct: 666 MHVVPVQLPLISALGQLRVSIPPDLRPLEARQSILLAVQXLGNRFPQGLPKLNPVKDMDV 725

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
            D E+V+LVNQ+EELE KL AHP++K QD +QI+CF+RKAEVNHE+QQLK+KMRDSQ+QK
Sbjct: 726 RDSEIVELVNQVEELEKKLVAHPMHKHQDMDQIKCFERKAEVNHEVQQLKTKMRDSQLQK 785

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FR+ELKNRSRVLKKLGHI+ADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 786 FREELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 845

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIP DKS+EQI LR ELA+PLQQLQ+SAR+IAE+
Sbjct: 846 ALASCFIPGDKSTEQIQLRTELARPLQQLQDSARRIAEI 884

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396436|ref|NP_565338.1| RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] gi|20197305|gb|AAC67203.2| expressed protein [Arabidopsis thaliana] gi|28973761|gb|AAO64196.1| putative DEAD/DEAH box RNA helicase (HUA ENHANCER2) [Arabidopsis thaliana] gi|330250934|gb|AEC06028.1| RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/219 (83%), Positives = 206/219 (94%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQLPLIS LS++R+SVP DLRP++ARQSILLA+QEL SRFP G PKL+PVKDM I
Sbjct: 679 MHVVPVQLPLISALSRLRISVPSDLRPVEARQSILLALQELSSRFPLGFPKLHPVKDMNI 738

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
           +D E+VDLV+QIEE+E KL AHP++KS+D+ QI+ FQRKAEVN+EIQQLKSKMRDSQ+QK
Sbjct: 739 QDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQK 798

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FRDELKNRSRVLKKLGHI+ADGVVQ+KGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 799 FRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 858

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
           ALASCFIPVDKS+EQ+NLR EL KPLQQLQ+SARKIAE+
Sbjct: 859 ALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEI 897

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2063648	995	HEN2 "hua enhancer 2" [Arabido	0.964	0.220	0.831	4.2e-95
RGD|1305984	337	Skiv2l2 "superkiller viralicid	0.964	0.649	0.436	4.7e-48
UNIPROTKB|F5H7E2	941	SKIV2L2 "Superkiller viralicid	0.964	0.232	0.436	2.9e-47
MGI|MGI:1919448	1040	Skiv2l2 "superkiller viralicid	0.964	0.210	0.440	3.1e-47
UNIPROTKB|F1N993	1031	F1N993 "Uncharacterized protei	0.964	0.212	0.436	3.9e-47
UNIPROTKB|P42285	1042	SKIV2L2 "Superkiller viralicid	0.964	0.210	0.436	4e-47
UNIPROTKB|E2RCI5	1042	SKIV2L2 "Uncharacterized prote	0.964	0.210	0.436	5.1e-47
ZFIN|ZDB-GENE-040426-2854	1034	skiv2l2 "superkiller viralicid	0.964	0.211	0.431	3.6e-46
UNIPROTKB|F1SLL6	1046	SKIV2L2 "Uncharacterized prote	0.964	0.209	0.434	6.1e-46
FB|FBgn0001986	1055	l(2)35Df "lethal (2) 35Df" [Dr	0.964	0.207	0.445	7.4e-45

TAIR|locus:2063648 HEN2 "hua enhancer 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 182/219 (83%), Positives = 206/219 (94%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             MHVVPVQLPLIS LS++R+SVP DLRP++ARQSILLA+QEL SRFP G PKL+PVKDM I
Sbjct:   679 MHVVPVQLPLISALSRLRISVPSDLRPVEARQSILLALQELSSRFPLGFPKLHPVKDMNI 738

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
             +D E+VDLV+QIEE+E KL AHP++KS+D+ QI+ FQRKAEVN+EIQQLKSKMRDSQ+QK
Sbjct:   739 QDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQK 798

Query:   121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
             FRDELKNRSRVLKKLGHI+ADGVVQ+KGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct:   799 FRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 858

Query:   181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
             ALASCFIPVDKS+EQ+NLR EL KPLQQLQ+SARKIAE+
Sbjct:   859 ALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEI 897

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0003724 "RNA helicase activity" evidence=ISS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0003002 "regionalization" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA

GO:0033043 "regulation of organelle organization" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

RGD|1305984 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 96/220 (43%), Positives = 150/220 (68%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct:    21 MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 80

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
             +D  +  ++ ++E  EH++++HPL+   + E      ++KA++  +I+  K +++ ++  
Sbjct:    81 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 140

Query:   120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
                DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL   Q 
Sbjct:   141 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQA 200

Query:   180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
              AL SCF+  + SSE   L  +LA PL+Q+QE A++IA+V
Sbjct:   201 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 240

GO:0000460 "maturation of 5.8S rRNA" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

GO:0000178 "exosome (RNase complex)" evidence=ISO

UNIPROTKB|F5H7E2 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 2.9e-47, P = 2.9e-47
 Identities = 96/220 (43%), Positives = 150/220 (68%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct:   625 MQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGI 684

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
             +D  +  ++ ++E  EH++++HPL+   + E      ++KA++  +I+  K +++ ++  
Sbjct:   685 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 744

Query:   120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
                DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL   Q 
Sbjct:   745 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 804

Query:   180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
              AL SCF+  + SSE   L  +LA PL+Q+QE A++IA+V
Sbjct:   805 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 844

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

MGI|MGI:1919448 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 504 (182.5 bits), Expect = 3.1e-47, P = 3.1e-47
 Identities = 97/220 (44%), Positives = 150/220 (68%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct:   724 MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGI 783

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
             +D  +  ++ ++E  EH++++HPL+   + E      +RKA++  +I+  K +++ ++  
Sbjct:   784 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKARTV 843

Query:   120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
                DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL   Q 
Sbjct:   844 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQA 903

Query:   180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
              AL SCF+  + SSE   L  +LA PL+Q+QE A++IA+V
Sbjct:   904 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 943

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|F1N993 F1N993 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 503 (182.1 bits), Expect = 3.9e-47, P = 3.9e-47
 Identities = 96/220 (43%), Positives = 150/220 (68%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct:   715 MQVVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 774

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
             +D  +  ++ ++E  EH++++HPL+   + E   +  +RKA++  +I+  K +++ ++  
Sbjct:   775 KDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETIYKLCERKAQIAMDIKAAKRELKKARTV 834

Query:   120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
                DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL   Q 
Sbjct:   835 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 894

Query:   180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
              AL SCF+  + S+E   L  +LA PL+Q+QE A++IA V
Sbjct:   895 TALLSCFVFQENSNEMPKLTEQLAGPLRQMQECAKRIARV 934

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000178 "exosome (RNase complex)" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|P42285 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 4.0e-47, P = 4.0e-47
 Identities = 96/220 (43%), Positives = 150/220 (68%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct:   726 MQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGI 785

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
             +D  +  ++ ++E  EH++++HPL+   + E      ++KA++  +I+  K +++ ++  
Sbjct:   786 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 845

Query:   120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
                DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL   Q 
Sbjct:   846 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 905

Query:   180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
              AL SCF+  + SSE   L  +LA PL+Q+QE A++IA+V
Sbjct:   906 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 945

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0000178 "exosome (RNase complex)" evidence=IDA

GO:0000460 "maturation of 5.8S rRNA" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|E2RCI5 SKIV2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 502 (181.8 bits), Expect = 5.1e-47, P = 5.1e-47
 Identities = 96/220 (43%), Positives = 150/220 (68%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct:   726 MQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 785

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
             +D  +  ++ ++E  EH++++HPL+   + E      ++KA++  +I+  K +++ ++  
Sbjct:   786 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 845

Query:   120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
                DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL   Q 
Sbjct:   846 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 905

Query:   180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
              AL SCF+  + SSE   L  +LA PL+Q+QE A++IA+V
Sbjct:   906 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 945

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2854 skiv2l2 "superkiller viralicidic activity 2-like 2" [Danio rerio (taxid:7955)]

 Score = 494 (179.0 bits), Expect = 3.6e-46, P = 3.6e-46
 Identities = 95/220 (43%), Positives = 149/220 (67%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             M VVPV L LI+++S +RL +P DLRP D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct:   718 MQVVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGIPLLDPIDDMGI 777

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
             +DP +  ++ ++E  EH+++ HPL+   + E   +  ++KA +  +I+  K +++ ++  
Sbjct:   778 KDPALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYKLCEKKALIAGDIKAAKRELKKARTV 837

Query:   120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
                DELK R RVL++LG   +  V+++KGR AC   +GDELL+TE+MFNG FNDL   Q 
Sbjct:   838 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACETSSGDELLLTEMMFNGLFNDLTAEQA 897

Query:   180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
              AL SCF+  + ++E   L  +L  PL+Q+QE A++IA+V
Sbjct:   898 TALLSCFVFQENANEMPKLTEQLGGPLRQMQECAKRIAKV 937

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0031101 "fin regeneration" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1SLL6 SKIV2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 492 (178.3 bits), Expect = 6.1e-46, P = 6.1e-46
 Identities = 97/223 (43%), Positives = 150/223 (67%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             M VVPV + L+S +S +RL +P DLRPLD RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct:   727 MQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 786

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
             +D  +  ++ ++E  EH++++HPL+   + E      ++KA++  +I+  K +++ ++  
Sbjct:   787 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 846

Query:   120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLID---TGDELLVTELMFNGTFNDLDH 176
                DELK R RVL++LG   +  V+++KGR AC I    + DELL+TE+MFNG FNDL  
Sbjct:   847 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISRWYSADELLLTEMMFNGLFNDLSA 906

Query:   177 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
              Q  AL SCF+  + SSE   L  +LA PL+Q+QE A++IA+V
Sbjct:   907 EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 949

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

GO:0000178 "exosome (RNase complex)" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0001986 l(2)35Df "lethal (2) 35Df" [Drosophila melanogaster (taxid:7227)]

 Score = 482 (174.7 bits), Expect = 7.4e-45, P = 7.4e-45
 Identities = 98/220 (44%), Positives = 145/220 (65%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             M VVPV   LI+ +S IR+  P DLR  D R+++L  +QE + RFP G P LNP+ DM I
Sbjct:   739 MEVVPVAHTLITQISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFPLGPPVLNPIDDMNI 798

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQI-RCFQRKAEVNHEIQQLKSKMRDSQIQ 119
             +D E  D+VN I + E +L  HPL+KS +  +I R +Q K  +  ++Q LK++++ ++  
Sbjct:   799 KDREFRDIVNTISQFEKRLEEHPLHKSPELERIHRRYQDKVTLQKQLQDLKAELKAARSL 858

Query:   120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
                DELK+R RVL+++G+     V++ KGR AC + + DELL+TE++FNG FNDL   Q 
Sbjct:   859 LQMDELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEMIFNGVFNDLTAPQA 918

Query:   180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
              AL SCF+  +KSSE +    EL+ PL+ +Q+ AR+IA+V
Sbjct:   919 VALLSCFVCDEKSSESVKSATELSGPLRSMQDLARRIAKV 958

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
pfam13234	266	pfam13234, rRNA_proc-arch, rRNA-processing arch do	5e-40
COG4581	1041	COG4581, COG4581, Superfamily II RNA helicase [DNA	2e-31
pfam08148	178	pfam08148, DSHCT, DSHCT (NUC185) domain	2e-25
cd13154	129	cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain	1e-18
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-04

>gnl|CDD|221998 pfam13234, rRNA_proc-arch, rRNA-processing arch domain

 Score =  137 bits (348), Expect = 5e-40
 Identities = 47/117 (40%), Positives = 77/117 (65%), Gaps = 1/117 (0%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           M VVPV L  I  +S +RL +P DLR  +AR+S+L +++E++ RFP G+P L+P++DMKI
Sbjct: 150 MEVVPVLLSCIDAISSVRLYLPKDLRSEEARESVLKSLKEVKKRFPDGIPLLDPIEDMKI 209

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQ-IRCFQRKAEVNHEIQQLKSKMRDS 116
           +D     L+ +IE LE +L ++PL+ S    +    + +K E+  EI+ LK K++ +
Sbjct: 210 KDDSFKKLLRKIEVLESRLLSNPLHNSPRLEELYDQYSKKVELEEEIKALKKKIKSA 266

Mtr4 is the essential RNA helicase, and is an exosome-activating cofactor. This arch domain is carried in Mtr4 and Ski2 (the cytosolic homologue of Mtr4). The arch domain is required for proper 5.8S rRNA processing, and appears to function independently of canonical helicase activity. Length = 266

>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]

 Score =  120 bits (303), Expect = 2e-31
 Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 9/224 (4%)

Query: 2   HVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPK-LNPVKDMKI 60
            +  V L   + + ++ L++P  L     +        E  +    G  K L  V +MKI
Sbjct: 726 RISFVYLLNATEILELILTMPRRLLSRQGKLRRGEPSNEAIAAGLDGNEKILENVVEMKI 785

Query: 61  EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
           + PE+   + ++    + L  +PL N    E  I      +++  EI+ L S +      
Sbjct: 786 QVPELTVSLLKLRFGRYHLSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSIEA---L 842

Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
            F D+ K    VLKKLG I  + VV +KGR A  I + DELL+TEL+F+G FNDL+  ++
Sbjct: 843 SFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVAAEISSEDELLLTELIFSGEFNDLEPEEL 902

Query: 180 AALASCFIPVDKSSEQINLRME----LAKPLQQLQESARKIAEV 219
           AAL S F+  +K+ +      E    L   L +L E ARK+ + 
Sbjct: 903 AALLSAFVFEEKTDDGTAEAPEITPALRDALLRLLELARKLNKD 946

Length = 1041

>gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain

 Score = 97.3 bits (243), Expect = 2e-25
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 138 INADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS-SEQI 196
           I+ DGVV LKGR AC I + DELL+TEL+F+G FNDLD  ++AAL S F+  ++   E  
Sbjct: 1   IDDDGVVTLKGRVACEISSEDELLLTELLFSGFFNDLDPEELAALLSAFVFEERRDDEGY 60

Query: 197 NLRMELAKPLQQLQESARKIAEVYKMS 223
              +ELA+ L +L E ARK+A+V +  
Sbjct: 61  PPSLELAEALNRLLEIARKLAKVEREH 87

This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. Length = 178

>gnl|CDD|240518 cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain in Mtr4 globular domain

 Score = 78.4 bits (194), Expect = 1e-18
 Identities = 30/53 (56%), Positives = 38/53 (71%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLN 53
           M VVPV L LI  +S IRL +P DLR  DARQS+  ++QE++ RFP GLP L+
Sbjct: 77  MEVVPVLLSLIQAISSIRLYLPKDLRSADARQSVGKSLQEVKRRFPDGLPLLD 129

Mtr4 is a conserved helicase with a core DExH region that cooperates with the eukaryotic nuclear exosome in RNA processing and degradation. KOW_Mtr4 motif might be involved in presenting RNA substrates to the helicase core. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. KOW motif is located at the extended insertion of Mtr4 protein. Length = 129

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 106 IQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTEL 165
           ++ LK    + + + F  E     RV+KKLGH N   VV+L G   C  +     LV E 
Sbjct: 28  VKTLKEDASEEERKDFLKEA----RVMKKLGHPN---VVRLLG--VC-TEEEPLYLVLEY 77

Query: 166 MFNGTFNDLDHH 177
           M  G   DL  +
Sbjct: 78  MEGG---DLLDY 86

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
KOG0948	1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	100.0
KOG0947	1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	100.0
COG4581	1041	Superfamily II RNA helicase [DNA replication, reco	99.95
PF08148	180	DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961	99.91
PF13234	268	rRNA_proc-arch: rRNA-processing arch domain; PDB:	99.89
PF04408	102	HA2: Helicase associated domain (HA2); InterPro: I	94.38
smart00847	92	HA2 Helicase associated domain (HA2) Add an annota	90.37
PRK11664	812	ATP-dependent RNA helicase HrpB; Provisional	88.6
TIGR01970	819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	82.85

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]

Probab=100.00  E-value=7.8e-54  Score=402.23  Aligned_cols=225  Identities=56%  Similarity=0.811  Sum_probs=221.6

Q ss_pred             CEEEEecccccceeeeeeEEcCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 027140            1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF   80 (227)
Q Consensus         1 ~~v~~v~l~~i~~is~~~l~ip~~~~~~~~~~~~~~~l~~~~~~~~~~~p~l~p~~~~ki~~~~~~~~~~~~~~l~~~l~   80 (227)
                      |.++||+++.|..||++|+++|+|+++.+++..+..+++++.++||+|+|++||+.||+|++.+|.+..++++.|+.++.
T Consensus       725 ~~vvpv~l~~i~~is~~r~~iP~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~~~~~~k~e~lE~~l~  804 (1041)
T KOG0948|consen  725 MEVVPVLLTLIDAISSIRLYIPKDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEFKKLVKKIESLEARLE  804 (1041)
T ss_pred             eEEEeeeHHHHhhhhHHHhcCcccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHHHHHHHHHHHHHHhhc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCch
Q 027140           81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE  159 (227)
Q Consensus        81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~E  159 (227)
                      .||.|.. ..++.|+.+.++..|..++++++.++++.+...+++|+++|.+||++|||++.+++|.+||||||||+|+||
T Consensus       805 ~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~KGrvACEIsSgDE  884 (1041)
T KOG0948|consen  805 SHPLHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVIELKGRVACEISSGDE  884 (1041)
T ss_pred             cCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEcceEEEEecccch
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHhhhcccccCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027140          160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSAN  225 (227)
Q Consensus       160 LllTEll~~g~f~~L~p~eiaAllS~~V~~~r~~~~~~l~~~l~~~~~~l~~ia~~i~~v~~~~~~  225 (227)
                      |++|||||+|.|++|+|+|+||||||||||+++++.|.+.++|+.++.+|++.|++|++|+.+|+.
T Consensus       885 LlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKl  950 (1041)
T KOG0948|consen  885 LLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECKL  950 (1041)
T ss_pred             HHHHHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999988999999999999999999999999999985

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]

Probab=100.00  E-value=9.8e-37  Score=292.62  Aligned_cols=217  Identities=26%  Similarity=0.354  Sum_probs=190.0

Q ss_pred             ccccceeeeeeEEcCCCCCCHHHHHHHHHHHHHHHhh---CCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHHcCCC
Q 027140            8 LPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESR---FPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPL   84 (227)
Q Consensus         8 l~~i~~is~~~l~ip~~~~~~~~~~~~~~~l~~~~~~---~~~~~p~l~p~~~~ki~~~~~~~~~~~~~~l~~~l~~~p~   84 (227)
                      ++.|+.++...+..+...........+.....++...   ...++|..+|+++.+.++.++.+...+...+++.+..+||
T Consensus       936 ~~~ie~l~~~~~~~~~~~~~D~~~aal~~~~~~~l~l~~~~~~~~~~~epv~~~k~kd~e~~~~~l~~~n~~~~~~~~~~ 1015 (1248)
T KOG0947|consen  936 VPNIEILCGDALRQIIGKVADGQKAALNESTAQVLDLLEGSLETPTWKEPVNDSKLKDDEVVEMLLERTNLQNLIQGNPC 1015 (1248)
T ss_pred             CcchhhhhccccccccccccccHHHHHHHHHHHhhhhhhcCccCcchhhhhhhhhhccHHHHHHHHHHHHHHHHHhcCCc
Confidence            4555556655555443332222233344444444443   2456999999999999999999999999999999999999


Q ss_pred             CCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHH
Q 027140           85 NKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVT  163 (227)
Q Consensus        85 ~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllT  163 (227)
                      +.| +|.+||....+..+++.++++|+.++++ +++.+.|+|.+|+.||+.+||||+..+|++||||||||+|++|||+|
T Consensus      1016 i~c~~f~~h~s~~~~~~~~~~ei~~L~~~~sd-~~L~l~pey~~RlevLk~~g~vD~~~~V~lkGRvAceI~s~~ELllt 1094 (1248)
T KOG0947|consen 1016 ISCPKFDQHYSLARREYKIEKEIENLEFELSD-QSLLLSPEYHNRLEVLKPLGFVDEMRTVLLKGRVACEINSGNELLLT 1094 (1248)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHhhhhhhhhhh-hhhhhCHHHHHHHHHHhhcCcccccceeeecceeeeeecCCcchhHH
Confidence            999 9999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCHHHHHHHhhhcccccCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027140          164 ELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSAN  225 (227)
Q Consensus       164 Ell~~g~f~~L~p~eiaAllS~~V~~~r~~~~~~l~~~l~~~~~~l~~ia~~i~~v~~~~~~  225 (227)
                      ||||+|.|.+++|+|||||||+||||+++...|.++|.+.++.+.+.++++++..++..|+-
T Consensus      1095 eli~dn~l~~l~peeiaallSslV~e~~~e~~~~~~~~l~k~~e~v~~v~~rl~ev~~~~~~ 1156 (1248)
T KOG0947|consen 1095 ELIFDNALVDLSPEEIAALLSSLVCEGKTERPPTLTPYLKKGKERVRDVAKRLEEVQSSHQL 1156 (1248)
T ss_pred             HHHHhhhhhhcCHHHHHHHHHHHHhcCccccCCCCChhhhhHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999777899999999999999999999999998763

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]

Probab=99.95  E-value=1.7e-27  Score=234.64  Aligned_cols=220  Identities=31%  Similarity=0.369  Sum_probs=198.0

Q ss_pred             EEEEecccccceeeeeeEEcCCCCCCHHHHHHHHHHHHHHHhhCCCC-CCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 027140            2 HVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQG-LPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF   80 (227)
Q Consensus         2 ~v~~v~l~~i~~is~~~l~ip~~~~~~~~~~~~~~~l~~~~~~~~~~-~p~l~p~~~~ki~~~~~~~~~~~~~~l~~~l~   80 (227)
                      .+..+++..+..+....+.+|+.+.....+......+......+.+| .+.++++.++++.+.++.............+.
T Consensus       726 ~~~~~~~~~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~v~~~~~~~~~~~~~~~~~~~~~~~~~  805 (1041)
T COG4581         726 RISFVYLLNATEILELILTMPRRLLSRQGKLRRGEPSNEAIAAGLDGNEKILENVVEMKIQVPELTVSLLKLRFGRYHLS  805 (1041)
T ss_pred             eeeeeeeccccccchhhhcCCHhHhhcccchhccchhHHHHHhccccchhhhhhcccccccchhHHHHHHHHhhcccccC
Confidence            56778888898999999999987654444444555555565666565 56999999999999999999999999999999


Q ss_pred             cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCch
Q 027140           81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE  159 (227)
Q Consensus        81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~E  159 (227)
                      .+|.+.| .+..|++.......|..+++++...+   +.+.+.++|..+..+|+.+||++.+.+|+.|||+||||+|++|
T Consensus       806 ~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~---~~~~~l~~~~~l~~~l~~~g~~~~~~~v~~kGr~a~eI~s~~e  882 (1041)
T COG4581         806 ENPLMNFDGAERLIENELLLSDLQAEIEDLSSSI---EALSFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVAAEISSEDE  882 (1041)
T ss_pred             CCccccchHHHHHHHhHhHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHhhcCCCcccccccccceeeeecCCCc
Confidence            9999999 99999999999999999999999998   4567899999999999999999998999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHhhhcccccCCC----CCcCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027140          160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSS----EQINLRMELAKPLQQLQESARKIAEVYKMSA  224 (227)
Q Consensus       160 LllTEll~~g~f~~L~p~eiaAllS~~V~~~r~~----~~~~l~~~l~~~~~~l~~ia~~i~~v~~~~~  224 (227)
                      |++|||||+|.|++++|+|+||++|||||+++++    +.|.++|.|++++..+.+++++|.+++.+++
T Consensus       883 llL~e~i~~g~f~~l~p~e~aallSa~v~e~~~~d~~~~~~~~~~~l~~~~~~l~e~~~kl~~~~~~~~  951 (1041)
T COG4581         883 LLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDDGTAEAPEITPALRDALLRLLELARKLNKDQNSSQ  951 (1041)
T ss_pred             hHHHHHHHcCCccCCCHHHHHHHHHheeeccCCcccccccccCCHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999986    4577899999999999999999999999886

>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases []

Probab=99.91  E-value=3.1e-24  Score=177.12  Aligned_cols=88  Identities=44%  Similarity=0.682  Sum_probs=69.2

Q ss_pred             ccCCCccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhcccccCCCCC-cCC--cHHHHHHHHHHHHHHH
Q 027140          138 INADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ-INL--RMELAKPLQQLQESAR  214 (227)
Q Consensus       138 id~~~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~V~~~r~~~~-~~l--~~~l~~~~~~l~~ia~  214 (227)
                      ||++++||+|||+||+|+++|||++|||||+|+|++|+|+|+||++|||||++++++. ...  ++.+.++++++.++++
T Consensus         1 id~~~~vt~kGr~a~~I~~~~eLl~te~l~~g~f~~L~p~elAa~lS~~v~e~~~~~~~~~~~~~~~l~~~~~~l~~~~~   80 (180)
T PF08148_consen    1 IDEDNVVTLKGRVACEIYSEDELLLTELLFSGVFDDLDPAELAALLSCFVYEPRREDEEERYPPSPRLREALEQLQEIAE   80 (180)
T ss_dssp             B-TTS-BSHHHHHHCC--SSTHHHHHHHHHCTCCCCS-HHHHHHHHHHHC-----SS---------HHHHHHHHHHHHHH
T ss_pred             CCCCCccCHHHHHHHHHcCcccHHHHHHHHcCCCCCCCHHHHHHHHHHhhcccccCcccccccccHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999997654 222  2389999999999999


Q ss_pred             HHHHHHHHhcC
Q 027140          215 KIAEVYKMSAN  225 (227)
Q Consensus       215 ~i~~v~~~~~~  225 (227)
                      +|++++.+||.
T Consensus        81 ~l~~~~~~~~l   91 (180)
T PF08148_consen   81 RLAKVEREHGL   91 (180)
T ss_dssp             HHHHHHHHTT-
T ss_pred             HHHHHHHHhCC
Confidence            99999999986

; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.

>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A

Probab=99.89  E-value=5.2e-23  Score=179.44  Aligned_cols=115  Identities=50%  Similarity=0.855  Sum_probs=102.6

Q ss_pred             CEEEEecccccceeeeeeEEcCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 027140            1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF   80 (227)
Q Consensus         1 ~~v~~v~l~~i~~is~~~l~ip~~~~~~~~~~~~~~~l~~~~~~~~~~~p~l~p~~~~ki~~~~~~~~~~~~~~l~~~l~   80 (227)
                      +.|+||++++|..||++|+++|+|+++.++|+++.++++++.++|++|+|.|||++||+|++.+|.+...+++.|++++.
T Consensus       152 ~~vv~v~l~~I~~ISs~rl~lp~dl~~~~~r~~~~~~l~el~~r~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~  231 (268)
T PF13234_consen  152 MEVVPVPLSCISSISSVRLKLPKDLRPQEARKQVLKSLQELLKRFPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLS  231 (268)
T ss_dssp             EEEEEEECCGEEEEEEEE----TTTTSCCCHHHHHHHHHHHHHHSSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeeHHHHHHhhceeeeCcccccchHHHHHHHHHHHHHHHhCCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027140           81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRD  115 (227)
Q Consensus        81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~  115 (227)
                      +||||.| ++++||..++++..|+.+++.|++++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~~  267 (268)
T PF13234_consen  232 SHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLSD  267 (268)
T ss_dssp             HSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999 9999999999999999999999999986

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length

Probab=94.38  E-value=0.052  Score=40.33  Aligned_cols=57  Identities=21%  Similarity=0.316  Sum_probs=34.8

Q ss_pred             HHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhccc
Q 027140          129 SRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIP  188 (227)
Q Consensus       129 ~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~V~  188 (227)
                      ...|..||.||+++.+|.-|+.++.+-- +--+---+++...|+-  ..+++.+.|++-.
T Consensus         3 ~~~L~~Lgald~~~~lT~lG~~~~~lPl-~p~~a~~Ll~~~~~~~--~~~~~~iaa~ls~   59 (102)
T PF04408_consen    3 LELLKSLGALDENGNLTPLGRKMSQLPL-DPRLAKMLLYGIQFGC--LDEALIIAAILSV   59 (102)
T ss_dssp             HHHHHHTTSB-TTS-B-HHHHHHTTSSS--HHHHHHHHHHHHCT---HHHHHHHHHHHTS
T ss_pred             HHHHHHCCCCCCCCCcCHHHHHHHHCCC-chHhHhHhhhcccccc--HHHHHHHHHHHcC
Confidence            4679999999999999999999999985 4444444444444544  3344444444443

It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation

Probab=90.37  E-value=0.99  Score=32.28  Aligned_cols=60  Identities=17%  Similarity=0.202  Sum_probs=43.8

Q ss_pred             HHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhccccc
Q 027140          129 SRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVD  190 (227)
Q Consensus       129 ~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~V~~~  190 (227)
                      ...|..+|-||.++.+|.-|+..+++-. +- -++-+|..+...+=-..++++++|++-.++
T Consensus         3 ~~~L~~LgAld~~~~lT~lG~~m~~lPl-~P-rla~~Ll~a~~~~~c~~~~~~i~a~ls~~~   62 (92)
T smart00847        3 LELLYELGALDDDGRLTPLGRKMAELPL-DP-RLAKMLLAAAELFGCLDEILTIAAMLSVGD   62 (92)
T ss_pred             HHHHHHCCCcCCCCCcCHHHHHHHHCCC-Ch-HHHHHHHHHHhhcCcHHHHHHHHHHhcCCC
Confidence            4679999999999999999999999975 44 445555555432014578888888876543

This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional

Probab=88.60  E-value=3.1  Score=42.15  Aligned_cols=65  Identities=20%  Similarity=0.287  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhcccc
Q 027140          123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPV  189 (227)
Q Consensus       123 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~V~~  189 (227)
                      ..+.+=+..|+.||.||+++.+|.-||..+++-. +.-+-.-+|....|. -..-.+||.++|+..+
T Consensus       384 ~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~-~Prla~~ll~a~~~~-~~~l~~a~~laall~e  448 (812)
T PRK11664        384 AALAAAKRLLQQLGALDGQGRLTARGRKMAALGN-DPRLAAMLVAAKEDD-EAALATAAKLAAILEE  448 (812)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC-chHHHHHHHHHHhcC-chhhHHHHHHHHhhcc
Confidence            5688889999999999999999999999999975 554444444444444 2111368888887664

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB

Probab=82.85  E-value=2.6  Score=42.74  Aligned_cols=48  Identities=17%  Similarity=0.394  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhC-CCC
Q 027140          123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNG-TFN  172 (227)
Q Consensus       123 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g-~f~  172 (227)
                      ..+.+-+..|..||.||+++.+|.-|+..+++-. |- -++-||..+ .|.
T Consensus       381 ~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~-~p-~l~~~ll~~~~~~  429 (819)
T TIGR01970       381 VALAAARQLLQRLGALDAQGRLTAHGKAMAALGC-HP-RLAAMLLSAHSTG  429 (819)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC-CH-HHHHHHHHhhhcC
Confidence            4578888999999999999999999999999985 54 444455444 444

This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
2xgj_A	1010	Structure Of Mtr4, A Dexh Helicase Involved In Nucl		1e-38
3l9o_A	1108	Crystal Structure Of Mtr4, A Co-Factor Of The Nucle		1e-38
4a4z_A	997	Crystal Structure Of The S. Cerevisiae Dexh Helicas		4e-07

>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 147/222 (66%), Gaps = 1/222 (0%)
Query: 3   VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
           V+P+ L  I ++  +RL +P D+R    ++++  +++E+  RFP G+P L+PVK+MKIED
Sbjct: 696 VIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 755
Query: 63  PEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKF 121
            + + L+ +I+ L  KL ++PL  S    ++   + RK +++ +++QLK K+ +SQ    
Sbjct: 756 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ 815
Query: 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
            D+L+ R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L   Q AA
Sbjct: 816 LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAA 875
Query: 182 LASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMS 223
           L SCF   ++  E   L+ ELA+PL+ ++E A KIA++ K S
Sbjct: 876 LLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDS 917

>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 147/222 (66%), Gaps = 1/222 (0%)
Query: 3    VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
            V+P+ L  I ++  +RL +P D+R    ++++  +++E+  RFP G+P L+PVK+MKIED
Sbjct: 794  VIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 853
Query: 63   PEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKF 121
             + + L+ +I+ L  KL ++PL  S    ++   + RK +++ +++QLK K+ +SQ    
Sbjct: 854  EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ 913
Query: 122  RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
             D+L+ R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L   Q AA
Sbjct: 914  LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAA 973
Query: 182  LASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMS 223
            L SCF   ++  E   L+ ELA+PL+ ++E A KIA++ K S
Sbjct: 974  LLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDS 1015

>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 102 VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELL 161
           +  +I++L   M D  +    D  K R  VLK    I+ +  V LKGR AC I++G EL+
Sbjct: 780 IKKKIEELYHLMSDQNLSLLPDYEK-RLAVLKDTEFIDQNHNVLLKGRVACEINSGYELV 838
Query: 162 VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ----INLRMELAKPLQQLQESARKIA 217
           +TEL+ +      +  ++ AL S F+   K+ E+    +  R  LAK  Q+++E  +K+ 
Sbjct: 839 LTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPR--LAKGKQRIEEIYKKML 896
Query: 218 EVY 220
            V+
Sbjct: 897 CVF 899

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	2e-59
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	4e-58
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	5e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010

 Score =  200 bits (509), Expect = 2e-59
 Identities = 90/222 (40%), Positives = 145/222 (65%), Gaps = 1/222 (0%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             V+P+ L  I ++  +RL +P D+R    ++++  +++E+  RFP G+P L+PVK+MKI
Sbjct: 694 CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKI 753

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
           ED + + L+ +I+ L  KL ++PL  S   E     + RK +++ +++QLK K+ +SQ  
Sbjct: 754 EDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAV 813

Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
              D+L+ R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L   Q 
Sbjct: 814 IQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQA 873

Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYK 221
           AAL SCF   ++  E   L+ ELA+PL+ ++E A KIA++ K
Sbjct: 874 AALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMK 915

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108

 Score =  196 bits (500), Expect = 4e-58
 Identities = 90/222 (40%), Positives = 145/222 (65%), Gaps = 1/222 (0%)

Query: 1    MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
              V+P+ L  I ++  +RL +P D+R    ++++  +++E+  RFP G+P L+PVK+MKI
Sbjct: 792  CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKI 851

Query: 61   EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
            ED + + L+ +I+ L  KL ++PL  S   E     + RK +++ +++QLK K+ +SQ  
Sbjct: 852  EDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAV 911

Query: 120  KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
               D+L+ R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L   Q 
Sbjct: 912  IQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQA 971

Query: 180  AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYK 221
            AAL SCF   ++  E   L+ ELA+PL+ ++E A KIA++ K
Sbjct: 972  AALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMK 1013

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997

 Score =  168 bits (425), Expect = 5e-48
 Identities = 46/224 (20%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
            ++  V +  I  ++K + + P   + +    + L       +    G   L    +++ 
Sbjct: 680 FYMEEVPVTAIEVITKRKFAAPLG-KVIKKDVAALNEFNAETNNILDG-KTLKEAINIEK 737

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
           +  ++  ++     +  ++F     K  +    I    +   +  +I++L   M D  + 
Sbjct: 738 QGLKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLS 797

Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
               + + R  VLK    I+ +  V LKGR AC I++G EL++TEL+ +      +  ++
Sbjct: 798 -LLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEI 856

Query: 180 AALASCFIPVDKSSEQI--NLRMELAKPLQQLQESARKIAEVYK 221
            AL S F+   K+ E+    +   LAK  Q+++E  +K+  V+ 
Sbjct: 857 VALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFN 900

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 32/226 (14%), Positives = 64/226 (28%), Gaps = 60/226 (26%)

Query: 38  VQELESRFPQGLPKLNP--VKDMKIEDPEVVDLVNQI---EELEHKLFAHPLNKSQDENQ 92
             E + ++   L       V +   +D  V D+   I   EE++H +           + 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKD--VQDMPKSILSKEEIDHII-----MSKDAVSG 63

Query: 93  IR----CFQRKAE------VNHEIQQ----LKSKMRDSQIQK---------FRDELKNRS 129
                     K E      V   ++     L S ++  Q Q           RD L N +
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 130 RVLKKLGHIN-----------------ADGVVQLKGRAACLIDTGDELLVTELMFNGTFN 172
           +V  K  +++                 A  V+ + G        G   +  ++  +    
Sbjct: 124 QVFAKY-NVSRLQPYLKLRQALLELRPAKNVL-IDGVLGS----GKTWVALDVCLSYKVQ 177

Query: 173 DLDHHQV--AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKI 216
                ++    L +C  P         L  ++        + +  I
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	100.0
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	100.0
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	100.0
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	85.9
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	80.91

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-51  Score=412.41  Aligned_cols=225  Identities=40%  Similarity=0.697  Sum_probs=200.3

Q ss_pred             CEEEEecccccceeeeeeEEcCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 027140            1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF   80 (227)
Q Consensus         1 ~~v~~v~l~~i~~is~~~l~ip~~~~~~~~~~~~~~~l~~~~~~~~~~~p~l~p~~~~ki~~~~~~~~~~~~~~l~~~l~   80 (227)
                      +.+++|++++|..||++++++|+++++.++|+++.+++.++.++|++|+|.++|+++|++++.+|.+...+++.++.++.
T Consensus       792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  871 (1108)
T 3l9o_A          792 CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLS  871 (1108)
T ss_dssp             CCCCCEESSCEEEEEEEECCCCTTTTSHHHHHHHHHHHHHHHHHCSSCCTTHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEechhheeeccceEEecCCCcCCHHHHHHHHHHHHHHHHhcCCCCcccChhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCch
Q 027140           81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE  159 (227)
Q Consensus        81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~E  159 (227)
                      +||||.| ++++||++++++.+++++++++++++++++++.++++|++|++||++|||||++++||+||||||||+|+||
T Consensus       872 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~e  951 (1108)
T 3l9o_A          872 SNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDE  951 (1108)
T ss_dssp             HSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTCCCSHHHHHHHC-CCTTH
T ss_pred             hCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCCcCcHHhHHHHHhcCccH
Confidence            9999999 999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHhhhcccccCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027140          160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSAN  225 (227)
Q Consensus       160 LllTEll~~g~f~~L~p~eiaAllS~~V~~~r~~~~~~l~~~l~~~~~~l~~ia~~i~~v~~~~~~  225 (227)
                      ||+|||||+|+|++|+|+||||+|||||||+|+++.|.+++.|++++.+++++|++|+++|.+||.
T Consensus       952 l~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~ 1017 (1108)
T 3l9o_A          952 LLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKI 1017 (1108)
T ss_dssp             HHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999888999999999999999999999999999985

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-50  Score=404.35  Aligned_cols=225  Identities=40%  Similarity=0.697  Sum_probs=218.7

Q ss_pred             CEEEEecccccceeeeeeEEcCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 027140            1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF   80 (227)
Q Consensus         1 ~~v~~v~l~~i~~is~~~l~ip~~~~~~~~~~~~~~~l~~~~~~~~~~~p~l~p~~~~ki~~~~~~~~~~~~~~l~~~l~   80 (227)
                      |.+++|++++|..||++++++|+++++.+.++.+.++++++.++|++++|.+||+++|++++.++.+...+++.+++++.
T Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  773 (1010)
T 2xgj_A          694 CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLS  773 (1010)
T ss_dssp             EEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhhccccHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCch
Q 027140           81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE  159 (227)
Q Consensus        81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~E  159 (227)
                      +||||.| ++++||++++++.+++++++.+++++++.+++.+++||++|++||++|||||++++||+||||||||+|+||
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~e  853 (1010)
T 2xgj_A          774 SNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDE  853 (1010)
T ss_dssp             TSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCH
T ss_pred             hCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccH
Confidence            9999999 999999999999999999999999999988889999999999999999999998999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHhhhcccccCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027140          160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSAN  225 (227)
Q Consensus       160 LllTEll~~g~f~~L~p~eiaAllS~~V~~~r~~~~~~l~~~l~~~~~~l~~ia~~i~~v~~~~~~  225 (227)
                      ||+|||||+|+|++|+|+||||+|||||||+|+++.|.++++|.+++++++++|++|+++|.+||.
T Consensus       854 l~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  919 (1010)
T 2xgj_A          854 LLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKI  919 (1010)
T ss_dssp             HHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999998888999999999999999999999999999985

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=100.00  E-value=2e-48  Score=389.14  Aligned_cols=219  Identities=21%  Similarity=0.303  Sum_probs=186.5

Q ss_pred             CEEEEecccccceeeeeeEEcC-CCC--CCHHHHHHHHHHHHHHHhhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHH
Q 027140            1 MHVVPVQLPLISTLSKIRLSVP-PDL--RPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEH   77 (227)
Q Consensus         1 ~~v~~v~l~~i~~is~~~l~ip-~~~--~~~~~~~~~~~~l~~~~~~~~~~~p~l~p~~~~ki~~~~~~~~~~~~~~l~~   77 (227)
                      +.+++|++++|..||++++++| +++  +++.+++.+.++++++.+.     |.++|++++++++.++.+...+++.++.
T Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  754 (997)
T 4a4z_A          680 FYMEEVPVTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDG-----KTLKEAINIEKQGLKIHQILLDRTNIRD  754 (997)
T ss_dssp             CCEEEEECC-CCEEEEEECC-CHHHHHHTCHHHHHHHHHHHHHHHHS-----CCCCCC------CCHHHHHHHHHHHHHH
T ss_pred             eEEEEeccchhhhhhcccccCChHhhhcCCHHHHHHHHHHHHHHhcc-----CCCCchhhcccccHHHHHHHHHHHHHHH
Confidence            3578999999999999999998 665  4788899999999988654     7899999999999999999999999999


Q ss_pred             HHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcC
Q 027140           78 KLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDT  156 (227)
Q Consensus        78 ~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s  156 (227)
                      ++.+||||.| ++++||++++++.+++++++.|++++++ +++.++++|++|++||++|||||++++||+||||||||+|
T Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~  833 (997)
T 4a4z_A          755 EIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSD-QNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINS  833 (997)
T ss_dssp             C------------CCSHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHTTSBCTTCCBCHHHHHHTTCCS
T ss_pred             HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHcCCcCCCCcccHHhHHHhhhcC
Confidence            9999999999 9999999999999999999999999999 8999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHhCCCCCCCHHHHHHHhhhcccccCC--CCCcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027140          157 GDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS--SEQINLRMELAKPLQQLQESARKIAEVYKMSAN  225 (227)
Q Consensus       157 ~~ELllTEll~~g~f~~L~p~eiaAllS~~V~~~r~--~~~~~l~~~l~~~~~~l~~ia~~i~~v~~~~~~  225 (227)
                      +|||++|||||+|+|++|+|+|+||+|||||||+|+  ++.|.+++.|++++.+++++|++|++++.+||.
T Consensus       834 ~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~  904 (997)
T 4a4z_A          834 GYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQI  904 (997)
T ss_dssp             SCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999998  456888999999999999999999999999985

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}

Probab=85.90  E-value=0.93  Score=38.43  Aligned_cols=61  Identities=16%  Similarity=0.289  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCH-HHHHHHhh
Q 027140          123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALAS  184 (227)
Q Consensus       123 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p-~eiaAllS  184 (227)
                      ..+.+=+..|..||-||++|.+|.-||..+++-. +--+---++....|.-+++ --|||+||
T Consensus        18 ~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~~~~l~iaA~Ls   79 (270)
T 3i4u_A           18 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCSEEMLTIVSMLS   79 (270)
T ss_dssp             HHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCHHHHHHHHHHHC
Confidence            4566778899999999999999999999999986 5544444444445554433 23445555

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=80.91  E-value=2  Score=41.63  Aligned_cols=62  Identities=19%  Similarity=0.225  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCH-HHHHHHhh
Q 027140          122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALAS  184 (227)
Q Consensus       122 ~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p-~eiaAllS  184 (227)
                      ...+.+-+..|..+|.||.++.+|.-||.++++.- +--+---++....|.-+++ -.|||+||
T Consensus       488 ~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~~~~l~i~a~ls  550 (773)
T 2xau_A          488 PETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCSQEILTIVAMLS  550 (773)
T ss_dssp             HHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence            35677888999999999999999999999999986 5544444444444543332 34445554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00