Citrus Sinensis ID: 027153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHEEEEEccccEEEHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEcccccEEEEccc
Coil and Loop (DISEMBL)
mvswnsvplEITYQVLGWISFVAWSVSFYPQVILNFRrksvvglnFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKygrdqmipvaanDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFrrkstdgfsiGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV
Flexible Loop (DISEMBL)
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV
Low Complexity Region (SEG)
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV
Disordered region (IsUnstruct)
***WNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLL***
Disordered Region (DISOPRED)
*****SVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV
Disordered Region (DISEMBL)
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV
Disordered Region (DISPRO)
***WNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
P57758	270	Cystinosin homolog OS=Ara	yes	no	1.0	0.840	0.731	6e-99
Q54WT7	284	Cystinosin homolog OS=Dic	yes	no	0.916	0.732	0.464	3e-51
O60931	367	Cystinosin OS=Homo sapien	yes	no	0.947	0.585	0.474	2e-48
A7MB63	367	Cystinosin OS=Bos taurus	yes	no	0.933	0.577	0.467	2e-48
P57757	367	Cystinosin OS=Mus musculu	yes	no	0.933	0.577	0.471	1e-46
Q9VCR7	397	Cystinosin homolog OS=Dro	yes	no	0.920	0.526	0.441	2e-43
Q09500	404	Cystinosin homolog OS=Cae	yes	no	0.955	0.537	0.438	2e-41
A8WN56	403	Cystinosin homolog OS=Cae	N/A	no	0.960	0.540	0.431	1e-40
P17261	260	Cystine transporter OS=Sa	yes	no	0.925	0.807	0.307	9e-15

>sp|P57758|CTNS_ARATH Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1

 Score =  360 bits (923), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 199/227 (87%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYM
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct: 121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
            G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLI 227

Thought to transport cystine out of lysosomes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54WT7|CTNS_DICDI Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1

 Score =  201 bits (511), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/211 (46%), Positives = 146/211 (69%), Gaps = 3/211 (1%)

Query: 17  GWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQY 76
           GWI F  WS+SFYPQVILNFR+K+V+GL+FDF+L N+T ++ Y ++N VL+F   V+ +Y
Sbjct: 12  GWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYFDKLVKNEY 71

Query: 77  FQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAA 136
           + KYG    IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I +++W++  
Sbjct: 72  YDKYGPP--IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLI 129

Query: 137 VCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGG 195
           V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N+LLDF GG
Sbjct: 130 VMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGG 189

Query: 196 CTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL 226
             +  QM +   D  +W  F G+  K  LSL
Sbjct: 190 VLSLLQMFLDVADSGNWNIFTGDPVKLGLSL 220

Thought to transport cystine out of lysosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|O60931|CTNS_HUMAN Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 148/217 (68%), Gaps = 2/217 (0%)

Query: 6   SVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVV 65
           S  + I  QV+GWI FVAWS+SFYPQVI+N+RRKSV+GL+FDFV LNLT   +Y ++N+ 
Sbjct: 120 SSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIG 179

Query: 66  LFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISM 125
           L +   +++Q+  KY  + + PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  ++
Sbjct: 180 LLWVPYIKEQFLLKY-PNGVNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAI 238

Query: 126 AIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 184
             + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+S
Sbjct: 239 GFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWS 298

Query: 185 IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGK 221
           IGN+LLDF GG  +  QM +QS + + W   +G+  K
Sbjct: 299 IGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTK 335

Thought to transport cystine out of lysosomes.

Homo sapiens (taxid: 9606)

>sp|A7MB63|CTNS_BOVIN Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/214 (46%), Positives = 149/214 (69%), Gaps = 2/214 (0%)

Query: 9   LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
           + I  QV+GWI FVAWSVSFYPQVI N+RRKSVVGL+FDFV+LNL    +Y ++N+ LF+
Sbjct: 123 VSIINQVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFW 182

Query: 69  SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
             ++++Q+  KY  + + PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ +
Sbjct: 183 VPSIKEQFLLKY-PNGVNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFL 241

Query: 129 SVVWLAAAVCFFV-ALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
            + WL   +   + A+   +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN
Sbjct: 242 VLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGN 301

Query: 188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGK 221
           +LLDF GG  +  QM +QS + + W   +G+  K
Sbjct: 302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTK 335

Thought to transport cystine out of lysosomes.

Bos taurus (taxid: 9913)

>sp|P57757|CTNS_MOUSE Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 142/214 (66%), Gaps = 2/214 (0%)

Query: 9   LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
           + I  QV+GWI F+AWSVSFYPQVI N+RRKSV+GL+FDF+ LNLT   +Y ++N+ L +
Sbjct: 123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLW 182

Query: 69  SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
              +Q+++  KY  + + PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  +
Sbjct: 183 VPYIQEEFLLKY-PNGVNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFL 241

Query: 129 SVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
            + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG 
Sbjct: 242 VLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGG 301

Query: 188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGK 221
           +LLDF GG  +  QM +QS + + W   +G+  K
Sbjct: 302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTK 335

Thought to transport cystine out of lysosomes.

Mus musculus (taxid: 10090)

>sp|Q9VCR7|CTNS_DROME Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/215 (44%), Positives = 138/215 (64%), Gaps = 6/215 (2%)

Query: 15  VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQ 74
           + GW+ FVAWSVSFYPQ+  N+RRKSV GLNFDF+ LN+   + Y ++N  L+F   +Q 
Sbjct: 134 IFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQN 193

Query: 75  QYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLA 134
           +Y  +Y    + PV  NDV FS+HA+  T IT+ Q   Y+R  Q+VS I+  I+++   A
Sbjct: 194 EYEVRYPL-GVNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FA 250

Query: 135 AAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLD 191
             V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLD
Sbjct: 251 VVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLD 310

Query: 192 FLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL 226
           F GG  +  QMI+ + + + WV+ +G+  K  L L
Sbjct: 311 FTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGL 345

Thought to transport cystine out of lysosomes.

Drosophila melanogaster (taxid: 7227)

>sp|Q09500|CTNS_CAEEL Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=3 SV=2

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 135/221 (61%), Gaps = 4/221 (1%)

Query: 9   LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
           L I  Q++GW  F AWS+SFYPQ+ LNF+RKSVVGLNFDF+ LNL    +Y I+N+++++
Sbjct: 125 LAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLVGFCAYAIFNLLMYY 184

Query: 69  SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
           +S V+ +Y     R    PV  NDV F++HA L   IT+ Q   YER  Q VS   +A++
Sbjct: 185 NSHVKNEYNIVNPRSPP-PVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALM 243

Query: 129 SVVWLAAAVCFFVA--LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIG 186
            +V ++   C   A  L     L  +   + I++ +T  KY PQA  N+ RKST G+SIG
Sbjct: 244 -IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIG 302

Query: 187 NILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
           NI+LDF GG  +  QMI+Q+++ N W  FY N  K  L  V
Sbjct: 303 NIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFV 343

Thought to transport cystine out of lysosomes (By similarity). May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis elegans (taxid: 6239)

>sp|A8WN56|CTNS_CAEBR Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 134/220 (60%), Gaps = 2/220 (0%)

Query: 9   LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
           L I  Q++GW  F AWSVSFYPQ+ LNF+RKSVVGLNFDF+ LNL    +Y ++N+++++
Sbjct: 124 LAILIQIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLNFDFLSLNLVGFGAYAMFNLLMYY 183

Query: 69  SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVS-KISMAI 127
           +S V+  Y  +  R    PV  NDV F++HA L   +T+ Q   YER  Q++S K  + I
Sbjct: 184 NSHVKNIYSMENPRSPP-PVLLNDVVFAVHAFLACFVTILQCIFYERDQQRISTKCIILI 242

Query: 128 VSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
           + +V           L   + L  +   + I++ +T  KY PQA  N++RKST G+SIGN
Sbjct: 243 IGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGN 302

Query: 188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
           ILLDF GG  +  QM++Q+I+ N W  FY N  K  L  V
Sbjct: 303 ILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFV 342

Thought to transport cystine out of lysosomes. May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis briggsae (taxid: 6238)

>sp|P17261|ERS1_YEAST Cystine transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERS1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 21/231 (9%)

Query: 14  QVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQ 73
            +LG +   +WS+S YP +I N+R KS   ++ DFV+LN T   SY++ ++ L       
Sbjct: 6   DILGIVYVTSWSISMYPPIITNWRHKSASAISMDFVMLN-TAGYSYLVISIFLQLYCWKM 64

Query: 74  QQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYER-------GVQKVSK---- 122
                  GR ++      D  + +H  L+ ++ L Q+    R       G +K++     
Sbjct: 65  TGDESDLGRPKLTQF---DFWYCLHGCLMNVVLLTQVVAGARIWRFPGKGHRKMNPWYLR 121

Query: 123 ---ISMAIVSVVWLAAAVC-FFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRK 178
               S+AI S++ +      ++    N   L   N    +++ M+LIKYIPQ   N  RK
Sbjct: 122 ILLASLAIFSLLTVQFMYSNYWYDWHNSRTLAYCNNLFLLKISMSLIKYIPQVTHNSTRK 181

Query: 179 STDGFSIGNILLDFLGGCTNYSQMIVQ-SIDQN-SWVNFYGNIGKTLLSLV 227
           S D F I  + LD  GG  +  Q+I Q S DQ  S   F  N GK  LS+V
Sbjct: 182 SMDCFPIQGVFLDVTGGIASLLQLIWQLSNDQGFSLDTFVTNFGKVGLSMV 232

Transport cystine out of vacuoles/endodomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
224141271	274	predicted protein [Populus trichocarpa]	1.0	0.828	0.806	1e-105
356558785	277	PREDICTED: cystinosin homolog [Glycine m	1.0	0.819	0.792	1e-104
449450036	274	PREDICTED: cystinosin homolog [Cucumis s	1.0	0.828	0.806	1e-104
388517027	277	unknown [Medicago truncatula]	1.0	0.819	0.797	1e-103
359488646	255	PREDICTED: cystinosin homolog [Vitis vin	1.0	0.890	0.788	1e-101
388506624	277	unknown [Lotus japonicus]	1.0	0.819	0.766	1e-100
297805606	270	PQ-loop repeat family protein [Arabidops	1.0	0.840	0.740	5e-98
356571457	277	PREDICTED: cystinosin homolog isoform 2	1.0	0.819	0.748	2e-97
15237468	270	cystinosin [Arabidopsis thaliana] gi|131	1.0	0.840	0.731	3e-97
21553944	270	unknown [Arabidopsis thaliana]	1.0	0.840	0.726	4e-96

>gi|224141271|ref|XP_002323998.1| predicted protein [Populus trichocarpa] gi|118485298|gb|ABK94508.1| unknown [Populus trichocarpa] gi|222867000|gb|EEF04131.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/227 (80%), Positives = 204/227 (89%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEITY+  GWI+F +WS+SFYPQVI+NFRRKSVVGLNFDFV+LNLTKHSSY+
Sbjct: 1   MASWNSIPLEITYETFGWIAFFSWSISFYPQVIMNFRRKSVVGLNFDFVVLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS +Q QYF+KYG  +MIPVAANDVAFS+HAVLLT ITLFQI IY+RG QKV
Sbjct: 61  IYNASLYFSSAIQHQYFEKYGHGEMIPVAANDVAFSIHAVLLTAITLFQIVIYDRGNQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKIS+A V VVWL AAVCFF+ALP+HSWLWLI+ FN+IQV MT+IKYIPQ IMNF RKST
Sbjct: 121 SKISIATVCVVWLVAAVCFFIALPSHSWLWLISIFNSIQVFMTVIKYIPQVIMNFMRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
           DGFSIGNILLD LGG TNY+QM VQSIDQNSWVNFYGNIGKTLLSLV
Sbjct: 181 DGFSIGNILLDCLGGVTNYAQMAVQSIDQNSWVNFYGNIGKTLLSLV 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558785|ref|XP_003547683.1| PREDICTED: cystinosin homolog [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/227 (79%), Positives = 204/227 (89%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS PL++TY+ LGW +FV+WS+SFYPQVILNFRRKSVVGLNFDFV+LNLTKHSSY+
Sbjct: 1   MASWNSFPLQVTYEALGWFAFVSWSISFYPQVILNFRRKSVVGLNFDFVVLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS +Q+QYF+KYG  +MIPVAANDVAFS+HAVLLT ITLFQIAIYERG QKV
Sbjct: 61  IYNASLYFSSAIQKQYFEKYGYGEMIPVAANDVAFSIHAVLLTAITLFQIAIYERGSQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SK+S+ IVSV WL AAVCFF+ALPN+SWLWL++ FN IQV+MT IKYIPQA+MNF RKST
Sbjct: 121 SKVSIGIVSVAWLVAAVCFFIALPNNSWLWLLSVFNTIQVVMTTIKYIPQAVMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
           DGFSIGNILLDF GG  NY QM+VQSIDQ+SWVNFYGNIGK LLSLV
Sbjct: 181 DGFSIGNILLDFSGGIANYGQMVVQSIDQDSWVNFYGNIGKVLLSLV 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450036|ref|XP_004142770.1| PREDICTED: cystinosin homolog [Cucumis sativus] gi|449483821|ref|XP_004156702.1| PREDICTED: cystinosin homolog [Cucumis sativus]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/227 (80%), Positives = 204/227 (89%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEITYQVLGW +FV+WS+SFYPQVILNFRRKSVVGLNFDFVLLNLTKHS+Y+
Sbjct: 1   MASWNSIPLEITYQVLGWFAFVSWSISFYPQVILNFRRKSVVGLNFDFVLLNLTKHSTYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS VQ+QYF KYG DQMIPVAA+DVAFS+HAVLLT ITLFQ+ IY+RG Q V
Sbjct: 61  IYNASLYFSSAVQKQYFDKYGYDQMIPVAASDVAFSIHAVLLTAITLFQVVIYDRGTQIV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKIS+ IV VVW+ AA+CFF+ L +HSWLWLI+ FN+IQV MT IKYIPQAIMNF RKST
Sbjct: 121 SKISLTIVIVVWIFAAICFFIGLSSHSWLWLISIFNSIQVFMTAIKYIPQAIMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
           DGFSIGNILLDFLGG  NY+QM VQSIDQNSWVNFYGNIGKTLLSL+
Sbjct: 181 DGFSIGNILLDFLGGLANYAQMAVQSIDQNSWVNFYGNIGKTLLSLI 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517027|gb|AFK46575.1| unknown [Medicago truncatula]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/227 (79%), Positives = 201/227 (88%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNSV LE+TY+VLGW +F+ WS+SFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSY+
Sbjct: 1   MASWNSVSLEVTYEVLGWFAFIVWSISFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS +Q+QYFQKYG DQMIPVA NDVAFS+HAVLLT I LFQIAIYERG QK+
Sbjct: 61  IYNSSLYFSSAIQKQYFQKYGYDQMIPVAKNDVAFSIHAVLLTAIALFQIAIYERGSQKL 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKI + IVS+VWL AAVCFFVAL NHSWLWL+N FN+IQV+MT IKYIPQ  MNF RKST
Sbjct: 121 SKICIGIVSIVWLTAAVCFFVALSNHSWLWLLNVFNSIQVLMTTIKYIPQVSMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
           DG+SIGNILLDF GG  NY QM+VQS+DQ+SWVNFYGNIGK LLSLV
Sbjct: 181 DGWSIGNILLDFSGGIANYGQMVVQSVDQDSWVNFYGNIGKVLLSLV 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488646|ref|XP_002268255.2| PREDICTED: cystinosin homolog [Vitis vinifera] gi|296081320|emb|CBI17702.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/227 (78%), Positives = 198/227 (87%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS  LEI YQV GW +FV+WS+SFYPQVILNFRRKSVVGLNFDFV+LNLTKHSSY+
Sbjct: 1   MASWNSTSLEIVYQVFGWTAFVSWSISFYPQVILNFRRKSVVGLNFDFVVLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN VL+FSS VQ+QY +KYG  QMIPVAANDVAFS+HAV+LT  TLFQIAIYERG QKV
Sbjct: 61  IYNAVLYFSSAVQRQYREKYGIGQMIPVAANDVAFSIHAVILTAFTLFQIAIYERGTQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKIS+ IV   WL+AAVC  +ALPNHSWLWLI+ FN IQV+MT+IKY+PQA MNFRRKST
Sbjct: 121 SKISIGIVCAAWLSAAVCVIIALPNHSWLWLISVFNTIQVVMTVIKYVPQAFMNFRRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
           DGFSIGNILLD  GG  NY+QM VQSIDQ+SWVNFYGNIGK LLSLV
Sbjct: 181 DGFSIGNILLDLCGGVANYAQMTVQSIDQDSWVNFYGNIGKLLLSLV 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506624|gb|AFK41378.1| unknown [Lotus japonicus]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/227 (76%), Positives = 200/227 (88%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS PL +TY++LGW +F++WS+SFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSY+
Sbjct: 1   MASWNSNPLHVTYELLGWFAFISWSISFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           I+N  L+FSS +Q+QYF KYG  +MIPVAANDVAFS+HAVLLT ITLFQI IYERG QKV
Sbjct: 61  IFNASLYFSSAIQKQYFDKYGYQEMIPVAANDVAFSIHAVLLTAITLFQIVIYERGSQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKIS+ IV V WL AA+CFF+AL +HSWLWL++ FN+IQV MT++KYIPQ IMNF RKST
Sbjct: 121 SKISIGIVFVAWLTAAICFFIALSDHSWLWLLSIFNSIQVAMTIVKYIPQVIMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
           DGFSIGNILLDF GG  NY QM+VQS+DQ+SWVNFYGNIGK LLSLV
Sbjct: 181 DGFSIGNILLDFSGGIANYGQMVVQSVDQDSWVNFYGNIGKVLLSLV 227

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805606|ref|XP_002870687.1| PQ-loop repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297316523|gb|EFH46946.1| PQ-loop repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  362 bits (930), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 168/227 (74%), Positives = 199/227 (87%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRRKSVVGLNFDFV+LNLTKHSSYM
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRKSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTALTLFQIFIYERGPQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct: 121 SRLAIGIVVVVWAFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
            G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGNIGKTLLSL+
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNIGKTLLSLI 227

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571457|ref|XP_003553893.1| PREDICTED: cystinosin homolog isoform 2 [Glycine max]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/227 (74%), Positives = 196/227 (86%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNSVPL ++Y+VLGW++F  WS+SFYPQVILNFRRKSVVGLNFDFV+LNLTKHSSY+
Sbjct: 1   MASWNSVPLHVSYEVLGWVAFACWSISFYPQVILNFRRKSVVGLNFDFVMLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS VQ+QY  KYG+++MIPVAANDVAFS HAVLLT I+LFQIAIY+RG QK+
Sbjct: 61  IYNASLYFSSAVQKQYRDKYGQNEMIPVAANDVAFSAHAVLLTAISLFQIAIYDRGSQKI 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKI+  I+ V W  AA CFFVAL NH WLWLI+ F+ IQV MT+IKYIPQA+MNF RKST
Sbjct: 121 SKIAYGILLVTWTTAATCFFVALHNHHWLWLISIFSGIQVCMTIIKYIPQAVMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
           +GFSI NILLDF GG  NY QM++QSIDQ+SWVNFYGNIGK LLSLV
Sbjct: 181 NGFSICNILLDFSGGIANYGQMVLQSIDQDSWVNFYGNIGKVLLSLV 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237468|ref|NP_198883.1| cystinosin [Arabidopsis thaliana] gi|13124057|sp|P57758.1|CTNS_ARATH RecName: Full=Cystinosin homolog gi|9758095|dbj|BAB08539.1| unnamed protein product [Arabidopsis thaliana] gi|15529266|gb|AAK97727.1| AT5g40670/MNF13_190 [Arabidopsis thaliana] gi|16974419|gb|AAL31135.1| AT5g40670/MNF13_190 [Arabidopsis thaliana] gi|332007197|gb|AED94580.1| cystinosin [Arabidopsis thaliana]

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 199/227 (87%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYM
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct: 121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
            G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLI 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553944|gb|AAM63025.1| unknown [Arabidopsis thaliana]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 165/227 (72%), Positives = 199/227 (87%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYM
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS++AV++T +TLFQI IYERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSINAVVMTAVTLFQIFIYERGPQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct: 121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
            G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLI 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2168843	270	AT5G40670 "AT5G40670" [Arabido	1.0	0.840	0.731	1.1e-92
ZFIN|ZDB-GENE-050522-352	384	ctns "cystinosis, nephropathic	0.920	0.544	0.502	8e-53
DICTYBASE|DDB_G0279445	284	ctns "cystinosin" [Dictyosteli	0.951	0.760	0.456	1.3e-52
UNIPROTKB|E1BXK0	377	CTNS "Uncharacterized protein"	0.938	0.564	0.465	5.8e-50
UNIPROTKB|A7MB63	367	CTNS "Cystinosin" [Bos taurus	0.920	0.569	0.469	2e-49
UNIPROTKB|O60931	367	CTNS "Cystinosin" [Homo sapien	0.933	0.577	0.476	2e-49
UNIPROTKB|F1RLI8	373	CTNS "Uncharacterized protein"	0.920	0.560	0.478	1.1e-48
UNIPROTKB|E2R8H4	388	CTNS "Uncharacterized protein"	0.920	0.538	0.469	1.8e-48
RGD|1308466	367	Ctns "cystinosin, lysosomal cy	0.920	0.569	0.473	7.7e-48
MGI|MGI:1932872	367	Ctns "cystinosis, nephropathic	0.920	0.569	0.473	1.2e-47

TAIR|locus:2168843 AT5G40670 "AT5G40670" [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 166/227 (73%), Positives = 199/227 (87%)

Query:     1 MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
             M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYM
Sbjct:     1 MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query:    61 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
             IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKV
Sbjct:    61 IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKV 120

Query:   121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
             S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct:   121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query:   181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
              G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+
Sbjct:   181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLI 227

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

ZFIN|ZDB-GENE-050522-352 ctns "cystinosis, nephropathic" [Danio rerio (taxid:7955)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 106/211 (50%), Positives = 156/211 (73%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             L I  Q++GWI FVAWSVSFYPQ   N++R+SVVGLNFDF+ LNLT   +Y ++NV LF+
Sbjct:   128 LFIINQIIGWIYFVAWSVSFYPQAYENWKRRSVVGLNFDFLALNLTGFIAYSVFNVGLFW 187

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
              + +Q+++ +K   + +IPV ANDV FS+HA+LLT++ + Q AIYERG QKVSK+++ ++
Sbjct:   188 VTYIQEEFLKK-DPNGVIPVDANDVFFSLHALLLTLVYICQCAIYERGGQKVSKVAIGLL 246

Query:   129 SVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
             ++ W  A V  FVA+    SWL  + +F+ I++ +TL+KYIPQA MN+RRKST+G+SIGN
Sbjct:   247 AIGWTFAFVSLFVAVAKKISWLDYLYYFSYIKLGVTLVKYIPQAHMNYRRKSTEGWSIGN 306

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 218
             +LLDF GG  +  QM +++ + + W   +G+
Sbjct:   307 VLLDFTGGSFSLIQMFLEAYNNDKWRFIFGD 337

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279445 ctns "cystinosin" [Dictyostelium discoideum (taxid:44689)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 100/219 (45%), Positives = 150/219 (68%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             L I   ++GWI F  WS+SFYPQVILNFR+K+V+GL+FDF+L N+T ++ Y ++N VL+F
Sbjct:     4 LSIISIIIGWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYF 63

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
                V+ +Y+ KYG    IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I 
Sbjct:    64 DKLVKNEYYDKYGPP--IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIA 121

Query:   129 SVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
             +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N
Sbjct:   122 TLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHN 181

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL 226
             +LLDF GG  +  QM +   D  +W  F G+  K  LSL
Sbjct:   182 VLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSL 220

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|E1BXK0 CTNS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 100/215 (46%), Positives = 148/215 (68%)

Query:     5 NSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV 64
             +S+ ++   +V+GWI F+AWS+SFYPQ+  N+RRKSVVGL+FDF+ LNLT   +Y ++NV
Sbjct:   130 HSIIVKYVDEVIGWIYFLAWSISFYPQLFENWRRKSVVGLSFDFIALNLTGFIAYSVFNV 189

Query:    65 VLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKIS 124
              LF+   +++++   Y    + PVA NDV FS+HAV LT++T+ Q  IYER  QKVSK  
Sbjct:   190 GLFWIPLIKEEFLLHYPNG-VNPVAINDVFFSLHAVALTLLTIIQCCIYERAGQKVSKTV 248

Query:   125 MAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGF 183
             + ++++ W+      F+A     +WL  +  F+ I++ +TLIKY PQA MNFRRKST G+
Sbjct:   249 VGLLALAWIFTFTTLFLAAAEEMTWLQFLFCFSYIKLAVTLIKYFPQAYMNFRRKSTVGW 308

Query:   184 SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 218
             SIGN+LLDF+GG  +  QM +QS + + W   +G+
Sbjct:   309 SIGNVLLDFIGGSFSLLQMFLQSYNNDEWKLIFGD 343

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

UNIPROTKB|A7MB63 CTNS "Cystinosin" [Bos taurus (taxid:9913)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 99/211 (46%), Positives = 146/211 (69%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             + I  QV+GWI FVAWSVSFYPQVI N+RRKSVVGL+FDFV+LNL    +Y ++N+ LF+
Sbjct:   123 VSIINQVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
               ++++Q+  KY    + PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ +
Sbjct:   183 VPSIKEQFLLKYPNG-VNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFL 241

Query:   129 SVVWLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + WL   +   +A    + WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN
Sbjct:   242 VLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGN 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 218
             +LLDF GG  +  QM +QS + + W   +G+
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGD 332

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O60931 CTNS "Cystinosin" [Homo sapiens (taxid:9606)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 102/214 (47%), Positives = 146/214 (68%)

Query:     6 SVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVV 65
             S  + I  QV+GWI FVAWS+SFYPQVI+N+RRKSV+GL+FDFV LNLT   +Y ++N+ 
Sbjct:   120 SSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIG 179

Query:    66 LFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISM 125
             L +   +++Q+  KY    + PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  ++
Sbjct:   180 LLWVPYIKEQFLLKYPNG-VNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAI 238

Query:   126 AIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 184
               + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+S
Sbjct:   239 GFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWS 298

Query:   185 IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 218
             IGN+LLDF GG  +  QM +QS + + W   +G+
Sbjct:   299 IGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGD 332

GO:0016021 "integral to membrane" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=NAS

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IMP;NAS

GO:0015811 "L-cystine transport" evidence=IDA;IMP;NAS

GO:0007420 "brain development" evidence=IMP

GO:0050890 "cognition" evidence=IMP

GO:0005765 "lysosomal membrane" evidence=IDA;NAS

GO:0005764 "lysosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0006749 "glutathione metabolic process" evidence=IMP

GO:0046034 "ATP metabolic process" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1RLI8 CTNS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 101/211 (47%), Positives = 143/211 (67%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             L I  QV+GWI FVAWS+SFYPQVI N+RRKSVVGL+FDFV LNL    +Y ++N+ L +
Sbjct:   123 LSIINQVIGWIYFVAWSISFYPQVITNWRRKSVVGLSFDFVALNLMGFVAYSVFNIGLLW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
                +++Q+  KY    + PV +NDV FS+HAV LT++ L Q  +YERG Q+VS  +++ +
Sbjct:   183 VPYIKEQFLLKYPNG-VNPVVSNDVFFSLHAVALTLVVLVQCCLYERGNQRVSWPAISFL 241

Query:   129 SVVWLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + WL       VA + + +WL  +  F+ I++ +TLIKY PQA MNF  KST+G+SIGN
Sbjct:   242 VLSWLFTLTALIVAAVGSITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKSTEGWSIGN 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 218
             +LLDF GG  +  QM +QS + + W   +G+
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGD 332

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|E2R8H4 CTNS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 99/211 (46%), Positives = 144/211 (68%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             + I  QV+GWI FV+WS+SFYPQVI N+RRKSVVGL+FDFV LNLT   +Y ++N+ L +
Sbjct:   123 ISIINQVIGWIYFVSWSISFYPQVITNWRRKSVVGLSFDFVALNLTGFVAYSVFNIGLLW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
               ++++Q+F KY    + PV +NDV FS+HAV LT++ + Q  +YERG Q VS  +++ +
Sbjct:   183 VPSIKEQFFLKYPNG-VNPVDSNDVFFSLHAVALTLVVMVQCFLYERGTQHVSWPAISFL 241

Query:   129 SVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + W+   V   +A     +WL  +  F+ I++ +TLIKY PQA MNF  KST+G+SIGN
Sbjct:   242 VLSWVFVLVTMILAAVRVITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKSTEGWSIGN 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 218
             +LLDF GG  +  QM +QS + + W   +G+
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGD 332

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

RGD|1308466 Ctns "cystinosin, lysosomal cystine transporter" [Rattus norvegicus (taxid:10116)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 100/211 (47%), Positives = 140/211 (66%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             + +  QV+GWI F+AWSVSFYPQVI N+RRKSVVGL+FDF+ LNLT   +Y ++N+ L +
Sbjct:   123 VSVINQVIGWIYFMAWSVSFYPQVIQNWRRKSVVGLSFDFLALNLTGFVAYSVFNIGLLW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
                +Q+++  KY    + PV  ND  FS+HAV LT+I + Q  +YERG Q+VS+ S+  +
Sbjct:   183 VPYIQEEFLLKYPNG-VNPVDINDAFFSLHAVALTLIVILQCCLYERGNQRVSRPSIGFL 241

Query:   129 SVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG 
Sbjct:   242 VLAWLFILVTMIVAAVGVTTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGG 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 218
             +LLDF GG  +  QM +QS + + W   +G+
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGD 332

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005770 "late endosome" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006749 "glutathione metabolic process" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0007616 "long-term memory" evidence=IEA;ISO

GO:0007625 "grooming behavior" evidence=IEA;ISO

GO:0007628 "adult walking behavior" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008542 "visual learning" evidence=IEA;ISO

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA;ISO

GO:0015811 "L-cystine transport" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=IEA;ISO

GO:0048058 "compound eye corneal lens development" evidence=IEA;ISO

GO:0050890 "cognition" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

MGI|MGI:1932872 Ctns "cystinosis, nephropathic" [Mus musculus (taxid:10090)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 100/211 (47%), Positives = 140/211 (66%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             + I  QV+GWI F+AWSVSFYPQVI N+RRKSV+GL+FDF+ LNLT   +Y ++N+ L +
Sbjct:   123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
                +Q+++  KY    + PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  +
Sbjct:   183 VPYIQEEFLLKYPNG-VNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFL 241

Query:   129 SVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG 
Sbjct:   242 VLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGG 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 218
             +LLDF GG  +  QM +QS + + W   +G+
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGD 332

GO:0003333 "amino acid transmembrane transport" evidence=IMP;IDA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006749 "glutathione metabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0007616 "long-term memory" evidence=IMP

GO:0007625 "grooming behavior" evidence=IMP

GO:0007628 "adult walking behavior" evidence=IMP

GO:0008542 "visual learning" evidence=IMP

GO:0015184 "L-cystine transmembrane transporter activity" evidence=ISO;IMP;IDA

GO:0015811 "L-cystine transport" evidence=ISO;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0048058 "compound eye corneal lens development" evidence=IMP

GO:0050890 "cognition" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P17261	ERS1_YEAST	No assigned EC number	0.3073	0.9251	0.8076	yes	no
P57758	CTNS_ARATH	No assigned EC number	0.7312	1.0	0.8407	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVII.628.1 SubName- Full=Putative uncharacterized protein; (267 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
TIGR00951	220	TIGR00951, 2A43, Lysosomal Cystine Transporter	5e-43
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	1e-12
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	1e-09
smart00679	32	smart00679, CTNS, Repeated motif present between t	5e-07
smart00679	32	smart00679, CTNS, Repeated motif present between t	5e-06

>gnl|CDD|130026 TIGR00951, 2A43, Lysosomal Cystine Transporter

 Score =  144 bits (364), Expect = 5e-43
 Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 16/215 (7%)

Query: 14  QVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQ 73
           Q+LGW    AWS+SFYPQ+I N+RRKS  GL+FDFV+LNL   ++Y+I+N +  +  ++ 
Sbjct: 5   QILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSIT 64

Query: 74  QQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWL 133
            ++           V  NDV F++HA+L+  I L Q   YERG Q+VS   +  + V  L
Sbjct: 65  NEFPLSSPG-----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALL 119

Query: 134 AAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDF 192
           A      VAL +    L  +   + I+V +TL+KY PQA  N+  KST   SI  + LDF
Sbjct: 120 ACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDF 179

Query: 193 LGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV 227
            G      Q I QS      VN  G+  K  L +V
Sbjct: 180 TGLL----QRIFQS------VNETGDPLKAGLFVV 204

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 220

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 60.6 bits (148), Expect = 1e-12
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 14 QVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTV 72
           VLG+IS V W VS+ PQ+I N+RRKS  GL+  F+LL L     Y++YN++  F   +
Sbjct: 3  NVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPLL 61

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 52.5 bits (127), Expect = 1e-09
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN 210
           L N    I +++ L+ YIPQ I N+RRKST+G SI  +LL  LG        I+      
Sbjct: 1   LSNVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

 Score = 44.4 bits (106), Expect = 5e-07
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 165 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGG 195
           +  +PQ I N+RRKST+G SI  +LL  LG 
Sbjct: 1   VSLLPQIIKNYRRKSTEGLSILFVLLWLLGD 31

Function unknown, but likely to be associated with the glycosylation machinery. Length = 32

>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

 Score = 41.7 bits (99), Expect = 5e-06
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 26 VSFYPQVILNFRRKSVVGLNFDFVLLNLT 54
          VS  PQ+I N+RRKS  GL+  FVLL L 
Sbjct: 1  VSLLPQIIKNYRRKSTEGLSILFVLLWLL 29

Function unknown, but likely to be associated with the glycosylation machinery. Length = 32

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
KOG3145	372	consensus Cystine transporter Cystinosin [Amino ac	100.0
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	100.0
KOG2913	260	consensus Predicted membrane protein [Function unk	99.9
KOG3211	230	consensus Predicted endoplasmic reticulum membrane	99.72
PF04193	61	PQ-loop: PQ loop repeat	99.46
PF04193	61	PQ-loop: PQ loop repeat	99.34
smart00679	32	CTNS Repeated motif present between transmembrane	99.02
KOG2913	260	consensus Predicted membrane protein [Function unk	98.88
smart00679	32	CTNS Repeated motif present between transmembrane	98.87
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	98.65
COG4095	89	Uncharacterized conserved protein [Function unknow	98.64
PHA02246	192	hypothetical protein	98.41
KOG1623	243	consensus Multitransmembrane protein [General func	98.16
KOG3145	372	consensus Cystine transporter Cystinosin [Amino ac	98.14
PF03083	87	MtN3_slv: Sugar efflux transporter for intercellul	98.03
COG4095	89	Uncharacterized conserved protein [Function unknow	98.0
PF03083	87	MtN3_slv: Sugar efflux transporter for intercellul	97.88
PF00810	147	ER_lumen_recept: ER lumen protein retaining recept	96.69
KOG3211	230	consensus Predicted endoplasmic reticulum membrane	95.84
KOG3106	212	consensus ER lumen protein retaining receptor [Int	95.74
PHA02246	192	hypothetical protein	95.4
KOG1623	243	consensus Multitransmembrane protein [General func	95.26
COG5196	214	ERD2 ER lumen protein retaining receptor [Intracel	92.38
PF00810	147	ER_lumen_recept: ER lumen protein retaining recept	82.61

>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-47  Score=324.94  Aligned_cols=226  Identities=56%  Similarity=0.919  Sum_probs=206.6

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhc
Q 027153            1 MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKY   80 (227)
Q Consensus         1 ~~~~~~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~   80 (227)
                      |..|++.++++..+++||++++.|++|++||++.||||||++|+|.||+.+++.|...|++++..++|.+..+.||..++
T Consensus       112 ~~v~~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~  191 (372)
T KOG3145|consen  112 MTVIRSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSY  191 (372)
T ss_pred             EEEeehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccC
Confidence            34689999999999999999999999999999999999999999999999999999999999999999998899998888


Q ss_pred             CCCCCCcccchhHHHHHHHHHHHHHhhhhhheeccCCccchh-HHHHHHHHHHHhhheeeEEecccc-chHHHHHHHHHH
Q 027153           81 GRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSK-ISMAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAI  158 (227)
Q Consensus        81 ~~~~~~pv~~~~v~~s~~~~~~~~iil~Q~~~Y~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~  158 (227)
                      |.| .+|+..+|+.+++|+++++.+++.|++.|+|..|+.|+ +..+++.+.++...+++.++++.. .|++....+.++
T Consensus       192 p~g-~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syi  270 (372)
T KOG3145|consen  192 PLG-VPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYI  270 (372)
T ss_pred             CCC-CCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            866 48899999999999999999999999999999999887 466666666665555655555432 478889999999


Q ss_pred             HHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhccC
Q 027153          159 QVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV  227 (227)
Q Consensus       159 ~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~~  227 (227)
                      +..+++++|+||.++||+||||+|+|+..+++|+.|+.++.+|.+.++.+++||..+.||++|++|+++
T Consensus       271 Kl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~v  339 (372)
T KOG3145|consen  271 KLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLV  339 (372)
T ss_pred             HHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999874

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=100.00  E-value=6e-38  Score=264.11  Aligned_cols=201  Identities=40%  Similarity=0.628  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCcccc
Q 027153           11 ITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAA   90 (227)
Q Consensus        11 ~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~~   90 (227)
                      .+|+++||+++++|+++++||++||+||||+||+|++|+.+|+.|++++.+|+...++++..+++|..++     ++++.
T Consensus         2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~-----~~v~~   76 (220)
T TIGR00951         2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSS-----PGVTQ   76 (220)
T ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccc-----CCCcH
Confidence            5799999999999999999999999999999999999999999999999999998888776665544332     33777


Q ss_pred             hhHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHhhheeeEEe-ccccchHHHHHHHHHHHHHHHHhhccc
Q 027153           91 NDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIP  169 (227)
Q Consensus        91 ~~v~~s~~~~~~~~iil~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~~P  169 (227)
                      +|+++++|.++++++++.|+.+|+++.|+.++.+...+...+..+....... .....+.+..+.+++++.++..++|+|
T Consensus        77 edl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiP  156 (220)
T TIGR00951        77 NDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFP  156 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhH
Confidence            8999999999999999999999998888888776543332222221111111 122357889999999999999999999


Q ss_pred             hhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhcc
Q 027153          170 QAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL  226 (227)
Q Consensus       170 Qi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~  226 (227)
                      |+++|||||||+|+|+.++++|++|.+.+    ++++.+++      +|++|++++.
T Consensus       157 Qi~~Ny~~ksT~glSi~~i~Ld~~G~lqr----i~ts~~~~------gd~~~l~~~~  203 (220)
T TIGR00951       157 QAATNYHNKSTGQLSIITVFLDFTGLLQR----IFQSVNET------GDPLKAGLFV  203 (220)
T ss_pred             HHHHHHhcCCCCcCCHHHHHHHHHHHHHH----HHHHHHHc------CCHHHHHHHH
Confidence            99999999999999999999999995555    45554333      8888887754

>KOG2913 consensus Predicted membrane protein [Function unknown]

Probab=99.90  E-value=2.3e-23  Score=178.56  Aligned_cols=176  Identities=24%  Similarity=0.285  Sum_probs=129.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCC
Q 027153            6 SVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQM   85 (227)
Q Consensus         6 ~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~   85 (227)
                      ...++.+|.++|.++++||+++.+|||++|||+||+||+|+.|+..|+.|++++.+++...                 +.
T Consensus         2 ~~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~-----------------~~   64 (260)
T KOG2913|consen    2 IMINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQ-----------------PL   64 (260)
T ss_pred             CchHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhc-----------------cc
Confidence            4567899999999999999999999999999999999999999999999999988765421                 11


Q ss_pred             CcccchhHHHHHHHHHHHHHhhhhhheeccCCc-c--------chhHHH------------------------HHHHHHH
Q 027153           86 IPVAANDVAFSMHAVLLTIITLFQIAIYERGVQ-K--------VSKISM------------------------AIVSVVW  132 (227)
Q Consensus        86 ~pv~~~~v~~s~~~~~~~~iil~Q~~~Y~~~~~-~--------~s~~~~------------------------~~~~~~~  132 (227)
                      .|.   ...-+....+.|++++.|+.||+.... +        .+..+-                        ......+
T Consensus        65 ~~~---~~~~~~yy~~~d~~l~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  141 (260)
T KOG2913|consen   65 GST---LKVQAVYYTLADSVLFVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVF  141 (260)
T ss_pred             chh---HHHHHHHHHHHHHHHHHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHH
Confidence            222   223455568899999999999976543 1        000000                        0000000


Q ss_pred             -Hhhh--eeeEEecc-c-cchHHHHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHH
Q 027153          133 -LAAA--VCFFVALP-N-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQ  201 (227)
Q Consensus       133 -~~~~--~~~~~~~~-~-~~~~~~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s  201 (227)
                       ..+.  .......+ . ......+.++|++++.++...|+|||++||+||||+|+|..++.++..|+..|..|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s  215 (260)
T KOG2913|consen  142 LICGAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS  215 (260)
T ss_pred             HHHHHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc
Confidence             0000  00000000 1 12234778999999999999999999999999999999999999999999999988

>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]

Probab=99.72  E-value=1e-16  Score=130.84  Aligned_cols=182  Identities=16%  Similarity=0.234  Sum_probs=127.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCC
Q 027153            5 NSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQ   84 (227)
Q Consensus         5 ~~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~   84 (227)
                      ++.+...+|+.+||..+.+....++|||.|+..+||++|+|...+.+++.|+...+.|+.            ...||   
T Consensus        23 ~~cl~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~------------~~g~p---   87 (230)
T KOG3211|consen   23 KDCLKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY------------TSGYP---   87 (230)
T ss_pred             ccchHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh------------hcCCC---
Confidence            467788999999999999999999999999999999999999999999999986655543            12232   


Q ss_pred             CCcccchhHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHhhheeeEEeccccchHHHHHHHHHHHHHHHH
Q 027153           85 MIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTL  164 (227)
Q Consensus        85 ~~pv~~~~v~~s~~~~~~~~iil~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~  164 (227)
                        +..+.+..+   .++++.+++.++++|+-..-...... ... ...+.+.      .....-.+..+........+..
T Consensus        88 --Fss~gE~~f---Ll~Q~vili~~if~f~~~~~~~v~~l-~~~-~~v~~~~------~sk~~p~~~~~L~~~~~l~i~v  154 (230)
T KOG3211|consen   88 --FSSYGEYPF---LLLQAVILILCIFHFSGQTVTVVQFL-GYI-ALVVSVL------ASKALPLWIITLAQNLCLPIVV  154 (230)
T ss_pred             --chhHHHHHH---HHHHHHHHHHHHHHhccceeehhhHH-HHH-HHHHHHH------HHhhhhHHHHHHHHhcCchhhh
Confidence              223333323   47788899999998883221111010 000 0000000      0011123445555566677888


Q ss_pred             hhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceec
Q 027153          165 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYG  217 (227)
Q Consensus       165 ~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~  217 (227)
                      .+|+||+..|||+|+|+++|..+.++++.|.+++++...-   +.+|...+.+
T Consensus       155 ~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq---~t~d~~mll~  204 (230)
T KOG3211|consen  155 VSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQ---ETGDFLMLLR  204 (230)
T ss_pred             HHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHH---hcCChhhHHH
Confidence            9999999999999999999999999999999999754433   4566655443

>PF04193 PQ-loop: PQ loop repeat

Probab=99.46  E-value=2.2e-13  Score=92.16  Aligned_cols=53  Identities=42%  Similarity=0.742  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHH
Q 027153           12 TYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV   64 (227)
Q Consensus        12 is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~   64 (227)
                      ++.++|+++.++++++++||++||+|+||++|+|+.++.+++.|+++..+|..
T Consensus         1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~   53 (61)
T PF04193_consen    1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI   53 (61)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999877654

>PF04193 PQ-loop: PQ loop repeat

Probab=99.34  E-value=1.9e-12  Score=87.57  Aligned_cols=58  Identities=29%  Similarity=0.461  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccC
Q 027153          152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQ  209 (227)
Q Consensus       152 ~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~  209 (227)
                      .+.+|+++.++.+++++||+++|||+||++|+|..++.++..|++++.+..+++..++
T Consensus         2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~   59 (61)
T PF04193_consen    2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF   59 (61)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4678999999999999999999999999999999999999999999999888876543

>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

Probab=99.02  E-value=1.5e-10  Score=68.22  Aligned_cols=32  Identities=53%  Similarity=0.710  Sum_probs=29.6

Q ss_pred             HhhHHHHHHHHHhcCccCcchhHHHHHHHHHH
Q 027153           26 VSFYPQVILNFRRKSVVGLNFDFVLLNLTKHS   57 (227)
Q Consensus        26 ~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~   57 (227)
                      ++++||+++|+|+||++|+|+.++++++.|++
T Consensus         1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~   32 (32)
T smart00679        1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI   32 (32)
T ss_pred             CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence            46899999999999999999999999999863

Function unknown, but likely to be associated with the glycosylation machinery.

>KOG2913 consensus Predicted membrane protein [Function unknown]

Probab=98.88  E-value=8.2e-10  Score=95.10  Aligned_cols=87  Identities=24%  Similarity=0.304  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCccc
Q 027153           10 EITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVA   89 (227)
Q Consensus        10 ~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~   89 (227)
                      +..+.++||++.+++...++|||++|+||||+||+|+.++.++..||.+|....            +.     ..+.   
T Consensus       163 ~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s~------------~~-----~~n~---  222 (260)
T KOG2913|consen  163 DSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILSS------------YL-----VTNL---  222 (260)
T ss_pred             cchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHcccccccccc------------cc-----ccCC---
Confidence            467889999999999999999999999999999999999999999999774420            00     1112   


Q ss_pred             chhHHHHHHHHHHHHHhhhhhheeccCC
Q 027153           90 ANDVAFSMHAVLLTIITLFQIAIYERGV  117 (227)
Q Consensus        90 ~~~v~~s~~~~~~~~iil~Q~~~Y~~~~  117 (227)
                       +|...+......|+.++.|+++|++.+
T Consensus       223 -~w~~~~~~~~~~D~~~~~q~~~~~~~~  249 (260)
T KOG2913|consen  223 -PWLVDSKGTIYLDIFIFLQFFNYRASK  249 (260)
T ss_pred             -cccccCCcchhHHHHHHHHHHHhhccc
Confidence             355566667889999999999888754

>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

Probab=98.87  E-value=7.6e-10  Score=65.12  Aligned_cols=32  Identities=50%  Similarity=0.748  Sum_probs=29.7

Q ss_pred             hhccchhhhhhccCcccccChHHHHHHHHhHH
Q 027153          165 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGC  196 (227)
Q Consensus       165 ~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~  196 (227)
                      ++++||+++|||+||++|+|+.++++++.|++
T Consensus         1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~   32 (32)
T smart00679        1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI   32 (32)
T ss_pred             CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence            36899999999999999999999999999974

Function unknown, but likely to be associated with the glycosylation machinery.

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=98.65  E-value=4.4e-08  Score=82.76  Aligned_cols=54  Identities=28%  Similarity=0.356  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhh
Q 027153          152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQ  205 (227)
Q Consensus       152 ~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~  205 (227)
                      ...+|+...+++.++++||+++||||||++|+|+.++.++..|..++....+..
T Consensus         4 S~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~   57 (220)
T TIGR00951         4 SQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQ   57 (220)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999999999999999886543

>COG4095 Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=2.2e-08  Score=71.42  Aligned_cols=72  Identities=24%  Similarity=0.256  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhccC
Q 027153          152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLV  227 (227)
Q Consensus       152 ~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~~  227 (227)
                      .+..|+.+..++.+.++||..+.+|.|+|.+.|+.|+.+...|-..++    ++|...+|-|.+.+|.+.+.++++
T Consensus         5 ~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwl----iygILi~~lPii~aN~i~~il~li   76 (89)
T COG4095           5 IEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWL----IYGILINDLPIIIANIISFILSLI   76 (89)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH----HHHHHHccCcchhHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999986    888888899999999999988753

>PHA02246 hypothetical protein

Probab=98.41  E-value=6.3e-06  Score=65.02  Aligned_cols=160  Identities=17%  Similarity=0.206  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCcccc
Q 027153           11 ITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAA   90 (227)
Q Consensus        11 ~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~~   90 (227)
                      .++..+...+...-...++||+....|.|+.+|.|-.|..+-...-- .+.||....                +....|.
T Consensus         3 ~~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvg-iSfyNlL~T----------------~~~~fqi   65 (192)
T PHA02246          3 NLSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVG-ISFYNLLLT----------------DASVFQI   65 (192)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHH-HHHHHHHhc----------------CCceEEE
Confidence            45667777888888899999999999999999999998777443222 113343211                1111111


Q ss_pred             hhHHHHHHHHHHHHHhhh-hhheeccCCccchhHHHHHHHHHHHhhheeeEEeccccchHHHHHHHHHHHHHHHHhhccc
Q 027153           91 NDVAFSMHAVLLTIITLF-QIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIP  169 (227)
Q Consensus        91 ~~v~~s~~~~~~~~iil~-Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~P  169 (227)
                          .+++ .-..+-+.. ....||+++--..++...+..+.+..+              +..+.....+...-..+|+|
T Consensus        66 ----~svg-~nl~lgivcLlv~~~rkkd~f~~~fiiifSLllfll~--------------~~~evtQtVat~tIiLaYi~  126 (192)
T PHA02246         66 ----VSVG-LNLTLGIVCLLVASYRKKDYFSIPFIIVFSLLLFLLS--------------DFTALTQTVATITIILAYVT  126 (192)
T ss_pred             ----eeee-hhhhhhhhheeeehhhccccccchHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHH
Confidence                1111 111212222 234567665433333222211122111              12233445666666779999


Q ss_pred             hhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhh
Q 027153          170 QAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS  206 (227)
Q Consensus       170 Qi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~  206 (227)
                      ||..=||.|+.||-|....++-..|-.+-..+.++..
T Consensus       127 QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lth  163 (192)
T PHA02246        127 QITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTH  163 (192)
T ss_pred             HHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhC
Confidence            9999999999999999999998888777666666543

>KOG1623 consensus Multitransmembrane protein [General function prediction only]

Probab=98.16  E-value=7.3e-06  Score=69.81  Aligned_cols=189  Identities=14%  Similarity=0.139  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCccc
Q 027153           10 EITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVA   89 (227)
Q Consensus        10 ~~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~   89 (227)
                      ..+-.++|-++..+-..+.+|-.++++||||+||.|..=++..+++..+++-|...            +.+   +..-+.
T Consensus         6 ~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~------------~~~---d~llit   70 (243)
T KOG1623|consen    6 LFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLL------------KVH---DYLLIT   70 (243)
T ss_pred             HHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhh------------ccC---ceEEEE
Confidence            34445566667777789999999999999999999999999999998877555321            010   111111


Q ss_pred             chhHHHHHHHHHHHHHhhhhhheeccCCccchhHHHHHHHHHHHh-hheeeEEeccccchHHHHHHHHHHHH---HHHHh
Q 027153           90 ANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLA-AAVCFFVALPNHSWLWLINFFNAIQV---IMTLI  165 (227)
Q Consensus        90 ~~~v~~s~~~~~~~~iil~Q~~~Y~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~  165 (227)
                      .+    +. ++....+-+.-+++|.++++..+......+..+.+. .........+.+    ..+.+|.+.+   ++...
T Consensus        71 IN----~~-G~~ie~~Yi~~f~~ya~~k~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~lG~vc~~~nI~~~~  141 (243)
T KOG1623|consen   71 IN----GI-GLVIETVYISIFLYYAPKKKTVKIVLALVLGVIGLIILLTLLLFHDPER----RVSVLGIVCAVFNISMFA  141 (243)
T ss_pred             Ee----hh-cHHHHHHHHHHHheecCchheeEeeehHHHHHHHHHHHHHHHhcCCcce----eeeeeehhhhhhhHHhhh
Confidence            11    11 245555666667788776543222211111111111 111111111111    1123334443   33444


Q ss_pred             hccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhcc
Q 027153          166 KYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL  226 (227)
Q Consensus       166 ~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~  226 (227)
                      +.+--+.+--|+||+|.+.+..-+.    ......++.+++..-+|.-+..-|.+-+.+++
T Consensus       142 sPL~~m~~VIktkSvE~mPf~Ls~a----~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~  198 (243)
T KOG1623|consen  142 APLSVIRKVIKTKSVEYMPFPLSFA----LFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGL  198 (243)
T ss_pred             ccHHhhhhheecCceeeechHHHHH----HHHHHHHHHHHHHHhcCeEEEcccHHHHHHHH
Confidence            5555566788889999999988443    34445667799988889888888887777664

>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]

Probab=98.14  E-value=1.7e-07  Score=81.04  Aligned_cols=56  Identities=23%  Similarity=0.318  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhh
Q 027153          150 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQ  205 (227)
Q Consensus       150 ~~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~  205 (227)
                      ..-+++||+..+.+.+++.||++.||||||++|+|+.++.+|..|-..+.+..+..
T Consensus       122 il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~l  177 (372)
T KOG3145|consen  122 ILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLL  177 (372)
T ss_pred             HHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999998877665

>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []

Probab=98.03  E-value=3.3e-06  Score=60.86  Aligned_cols=69  Identities=22%  Similarity=0.285  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCCcccceeccceehhhcc
Q 027153          154 FFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL  226 (227)
Q Consensus       154 ~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~i~~n~~~~~~~~  226 (227)
                      .++....++...+.+||+.+.+|+|+++++|...+...+.++.++.    .+|...+||+.+..|.+-+.++.
T Consensus         5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~----~YG~l~~d~~i~~~N~~g~~~~~   73 (87)
T PF03083_consen    5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWL----IYGILINDWPIIVPNVFGLVLSI   73 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhh----hhhhhcCCeeEEeeHHHHHHHHH
Confidence            4556677778888999999999999999999999999999999986    99999999999999998877653

Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane

>COG4095 Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=2.9e-05  Score=55.58  Aligned_cols=53  Identities=19%  Similarity=0.354  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHH
Q 027153           12 TYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV   64 (227)
Q Consensus        12 is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~   64 (227)
                      .-.+.|++....-.++++||.+|.+|.|+++++|+.++..-..|..++++|.+
T Consensus         4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI   56 (89)
T COG4095           4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI   56 (89)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999988876

>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []

Probab=97.88  E-value=6.2e-05  Score=54.12  Aligned_cols=82  Identities=23%  Similarity=0.347  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCcccchhHH
Q 027153           15 VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVA   94 (227)
Q Consensus        15 ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~~~~v~   94 (227)
                      ++|.+..++-..+.+||+++.+|+||++++|+..+...++++..+..|....                ++ .++-.....
T Consensus         5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~----------------~d-~~i~~~N~~   67 (87)
T PF03083_consen    5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI----------------ND-WPIIVPNVF   67 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc----------------CC-eeEEeeHHH
Confidence            4566677778888999999999999999999999999999999888876521                11 233333333


Q ss_pred             HHHHHHHHHHHhhhhhheeccCC
Q 027153           95 FSMHAVLLTIITLFQIAIYERGV  117 (227)
Q Consensus        95 ~s~~~~~~~~iil~Q~~~Y~~~~  117 (227)
                          .+......+.-++.|.+++
T Consensus        68 ----g~~~~~~~~~~~~~y~~~~   86 (87)
T PF03083_consen   68 ----GLVLSIIYLVVYYIYPSKK   86 (87)
T ss_pred             ----HHHHHHHHHhheEEeCCCC
Confidence                3566666677777777653

Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane

>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway

Probab=96.69  E-value=0.017  Score=45.89  Aligned_cols=57  Identities=9%  Similarity=0.139  Sum_probs=48.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHH
Q 027153          147 SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMI  203 (227)
Q Consensus       147 ~~~~~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~  203 (227)
                      +..+..++++..+..+++++-+||..+-.|+|.+|.+...+++.....=+++++-.+
T Consensus        88 ~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi  144 (147)
T PF00810_consen   88 NSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWI  144 (147)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHH
Confidence            344678999999999999999999999999999999999988887777666665443

The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane

>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]

Probab=95.84  E-value=0.024  Score=47.20  Aligned_cols=75  Identities=15%  Similarity=0.073  Sum_probs=52.3

Q ss_pred             HHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhcCCCCCCcccchhHHHHHHHHHH
Q 027153           23 AWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLL  102 (227)
Q Consensus        23 ~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i~~~~~~~~~~~~~~y~~~~~~~~~~pv~~~~v~~s~~~~~~  102 (227)
                      .-..+++||+.+|||+|++--+|....++.+.|...-.++.. .           ++   +|  +.   -+..-+....+
T Consensus       152 i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsi-q-----------~t---~d--~~---mll~~v~s~~~  211 (230)
T KOG3211|consen  152 IVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSI-Q-----------ET---GD--FL---MLLRFVISLAL  211 (230)
T ss_pred             hhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHH-H-----------hc---CC--hh---hHHHHHHHHHH
Confidence            445899999999999999999999999999988875533221 1           11   11  11   11111224677


Q ss_pred             HHHhhhhhheeccCC
Q 027153          103 TIITLFQIAIYERGV  117 (227)
Q Consensus       103 ~~iil~Q~~~Y~~~~  117 (227)
                      +.++..|+..|+++.
T Consensus       212 Ng~i~aq~l~Y~s~~  226 (230)
T KOG3211|consen  212 NGLITAQVLRYWSTA  226 (230)
T ss_pred             hHHHHHHHHHHHhcC
Confidence            899999999888654

>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.74  E-value=0.21  Score=41.23  Aligned_cols=60  Identities=8%  Similarity=0.156  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCC
Q 027153          151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN  210 (227)
Q Consensus       151 ~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~  210 (227)
                      +.++++..+.-+++++-+||...--|.|.+|-+--..++.--.-=.+++.-.+.+-...+
T Consensus       115 ~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~  174 (212)
T KOG3106|consen  115 ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWIYRYVTED  174 (212)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            568899999999999999999999999999998888877666555666665555543333

>PHA02246 hypothetical protein

Probab=95.40  E-value=0.12  Score=41.12  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             HHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHH
Q 027153           25 SVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSY   59 (227)
Q Consensus        25 ~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~   59 (227)
                      ...++|||+.=||+|+.||.++.+.++-..|-.+-
T Consensus       121 iLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L  155 (192)
T PHA02246        121 ILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASL  155 (192)
T ss_pred             HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHH
Confidence            46799999999999999999999998877776543

>KOG1623 consensus Multitransmembrane protein [General function prediction only]

Probab=95.26  E-value=0.032  Score=47.73  Aligned_cols=70  Identities=16%  Similarity=0.133  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHHHHHhhhccCC-cccceeccceehhh
Q 027153          151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN-SWVNFYGNIGKTLL  224 (227)
Q Consensus       151 ~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~s~~~~~~~~~-~~~~i~~n~~~~~~  224 (227)
                      ....++.......+.+-+|-.++-+||||+||.|..-+++...++.+|+    -++...+ |+..|+-|.+-..+
T Consensus         8 l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl----~YG~~~~~d~llitIN~~G~~i   78 (243)
T KOG1623|consen    8 LFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWL----YYGLLKVHDYLLITINGIGLVI   78 (243)
T ss_pred             HHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHH----HhhhhccCceEEEEEehhcHHH
Confidence            3444555556666788899999999999999999999999999999986    8885555 99999999876543

>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]

Probab=92.38  E-value=4.5  Score=32.92  Aligned_cols=50  Identities=12%  Similarity=0.115  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHhhccchhhhhhccCcccccChHHHHHHHHhHHHHHH
Q 027153          151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYS  200 (227)
Q Consensus       151 ~~~~lg~~~~~~~~~~~~PQi~~n~~~kst~glS~~~~~l~~~G~~~~~~  200 (227)
                      +.++++..+.-+..++-+||.++--+.+.||.+-...++....--..|+-
T Consensus       116 isnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip  165 (214)
T COG5196         116 ISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIP  165 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhh
Confidence            45778889999999999999999999999999988887766554444443

>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway

Probab=82.61  E-value=5.3  Score=31.64  Aligned_cols=51  Identities=20%  Similarity=0.216  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccCcchhHHHHHHHHHHHHHH
Q 027153           11 ITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMI   61 (227)
Q Consensus        11 ~is~ilG~~~~~~~~~s~iPQi~~N~~~KS~eGLS~~f~~l~~~g~~~~~i   61 (227)
                      ...+++=..++...+++-+||+....|+|.+|.+..-++..--...+++.+
T Consensus        91 ~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~  141 (147)
T PF00810_consen   91 FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLL  141 (147)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHH
Confidence            455666677888999999999999999999999999999888887776644

The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00