Citrus Sinensis ID: 027169

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Secondary Structure (PSIPRED)
ccEEEccccccccEEEHHHHcHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHEEEEEEEcccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccHHHEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccHHcccccccccccccccc
Coil and Loop (DISEMBL)
MEKVAIRSRSSQAKILGTVVSIAGAFIVSlykgppllgfsspsnsniqlpvseysnwALGGLLLTVTCFSSATWKIFQAAVLKeypdkinlVFFSCFFGTIQCAVVSIIVernpsawklqpgiQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLgetphlgsliGTVVIAFGFYAVIWAQgkesnmttgnvgsleslnqkipplknt
Flexible Loop (DISEMBL)
mekvairsrssqakiLGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNmttgnvgsleslnqkipplknt
Low Complexity Region (SEG)
MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Disordered region (IsUnstruct)
*************KILGTVVSIAGAFIVSLYKGPPLLGFSS***SNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG**************************
Disordered Region (DISOPRED)
MEKVAI*SRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF*****************WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA****************************
Disordered Region (DISEMBL)
***********QAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Disordered Region (DISPRO)
*EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS*************SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG**************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.916	0.565	0.408	4e-42
F4KHA8	370	WAT1-related protein At5g	no	no	0.916	0.562	0.408	2e-40
Q94JU2	367	WAT1-related protein At3g	no	no	0.986	0.610	0.407	4e-39
F4JK59	347	WAT1-related protein At4g	no	no	0.881	0.576	0.432	8e-38
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.942	0.521	0.341	8e-37
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.951	0.555	0.355	1e-36
F4I5D5	375	WAT1-related protein At1g	no	no	0.894	0.541	0.371	3e-34
Q9M0B8	373	WAT1-related protein At4g	no	no	0.969	0.589	0.342	9e-34
Q9LV20	383	WAT1-related protein At3g	no	no	0.907	0.537	0.349	3e-33
Q9LRS5	353	WAT1-related protein At3g	no	no	0.898	0.577	0.366	1e-31

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  171 bits (433), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 133/213 (62%), Gaps = 5/213 (2%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-----PSNSNIQLPVSEYS 55
           ME+V +RS ++QAKI+G ++SI+GA +V LYKGP +L  +S     P+ +  Q   S  S
Sbjct: 133 MEQVRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIES 192

Query: 56  NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPS 115
           +W +GGLLL    F  + W I Q  V++ YP++I +VFF   F T+    V +  E N +
Sbjct: 193 SWIIGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLT 252

Query: 116 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 175
           +W L+P I   A+IY+ +  ++  +    W L  KGPV+++LF+PL  AIAV M  +FLG
Sbjct: 253 SWVLKPDISLAAIIYSGVFVSLFSALTHTWGLHLKGPVYISLFRPLSIAIAVAMGAIFLG 312

Query: 176 ETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTT 208
           +  HLGS+IG++++  GFY VIW + +E  + T
Sbjct: 313 DALHLGSVIGSMILCIGFYTVIWGKAREDTIKT 345

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 136/213 (63%), Gaps = 5/213 (2%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-----PSNSNIQLPVSEYS 55
           ME++ +RS ++QAKI+GT+VSI+GA +V LYKGP +L  +S     P+ S  Q   S  S
Sbjct: 134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDS 193

Query: 56  NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPS 115
           +W +GGLLL       + W I Q  V++ YP++I +VF      T+  A V +  E++ +
Sbjct: 194 SWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLN 253

Query: 116 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 175
           ++ L+PG+   +V+Y+  + +   S I  W L  KGPV+++LFKPL   IAV M VMFLG
Sbjct: 254 SFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLG 313

Query: 176 ETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTT 208
           +  +LGS+IG+++++ GFY VIW + +E ++ T
Sbjct: 314 DALYLGSVIGSLILSLGFYTVIWGKAREDSIKT 346

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  161 bits (407), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/238 (40%), Positives = 137/238 (57%), Gaps = 14/238 (5%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 60
           ME V+ +  SS AK+LGTVVSI GAFIV+LY GP ++  S PS S      S   NW LG
Sbjct: 125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS--LRSQSTNPNWILG 182

Query: 61  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNP-SAWKL 119
              L V  F    W I Q  +++EYP +  +V F     +   A+V++  E N   AWK+
Sbjct: 183 AGFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKI 242

Query: 120 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 179
           +P I   +++ + + G+ I ++I  W L+ KGP+FVA+FKPL  AIAV M V+FL ++ +
Sbjct: 243 KPNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLY 302

Query: 180 LGSLIGTVVIAFGFYAVIWAQGKE---------SNMTTGNVGSLESL--NQKIPPLKN 226
           +GSLIG  VI  GFY V+W + KE         +N    N   L+S   +QK P L++
Sbjct: 303 IGSLIGATVITIGFYTVMWGKAKEVALVEDDNKANHEEANEADLDSPSGSQKAPLLES 360

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  157 bits (396), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 138/208 (66%), Gaps = 8/208 (3%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 60
           ME+V +RS ++QAKI+GT+VSI+GA ++ LYKGP LL  +S ++          S+W +G
Sbjct: 130 MEQVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFE--------SSWIIG 181

Query: 61  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 120
           GLLL +     + W I Q  +++ YP++I +VF      T+    V ++VE++ ++W+L+
Sbjct: 182 GLLLGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLK 241

Query: 121 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 180
           PG    +VIY+ +  T + S I  W L  KGPV+++LFKPL  AIAV MA +FLG+T HL
Sbjct: 242 PGFSLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHL 301

Query: 181 GSLIGTVVIAFGFYAVIWAQGKESNMTT 208
           GS+IG+V+++FGFY VIW + +E +  T
Sbjct: 302 GSVIGSVILSFGFYTVIWGKAREDSTKT 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score =  153 bits (387), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 129/234 (55%), Gaps = 20/234 (8%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEY------ 54
           +EKV I  R   AKI+GTV  ++GA I++LYKGPP+     P   N+++  S +      
Sbjct: 132 LEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRP---NLEVTASYFKAFQGN 188

Query: 55  ------SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSI 108
                  NW LG + L   C + + W + QA VLK YP ++++  F+CFFG IQ  +++ 
Sbjct: 189 DLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAA 248

Query: 109 IVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVF 168
             E +   WK+  G +   ++YA  V + I  S+  WC+ + GPVFVA+++P+ T     
Sbjct: 249 FFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAI 308

Query: 169 MAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIP 222
           MA + LGE  +LG + G ++I  G Y V+W + +E  +     G L++ +  +P
Sbjct: 309 MASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRL-----GLLQAKSSMVP 357

Pinus taeda (taxid: 3352)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 9/225 (4%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP-------SNSNIQLPVSE 53
           +EKV I  R   +KILGT + +AGA +++LYKGP +   +S        +NS +  P+  
Sbjct: 133 IEKVRINRRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGN 192

Query: 54  YS--NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVE 111
            +  NW LG + L   C S + W +FQA VLK YP ++++  ++CFFG IQ  +++   E
Sbjct: 193 AAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCE 252

Query: 112 RNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAV 171
           R+  AW    G +   ++YA IV + I  ++  WC+ + GPVFVA+++P+ T +   MA 
Sbjct: 253 RDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMAS 312

Query: 172 MFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLES 216
           + LGE  +LG +IG V+I  G Y V++ + +E         +++S
Sbjct: 313 IALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQS 357

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 7/210 (3%)

Query: 3   KVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEY-------S 55
           K+  R+ S++AK++GT+VS++GAF+  LYKGP +   SS S +     V +         
Sbjct: 130 KLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPD 189

Query: 56  NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPS 115
           NW LG + L V  FS + + + Q   +K+YP  + +  F    GTIQC + S+ +ER+ S
Sbjct: 190 NWFLGCIFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMERDLS 249

Query: 116 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 175
           AWK+QP      +I     G+VIR+S+   C Q KGP +V LFKP G   A      F  
Sbjct: 250 AWKIQPNFDLYLIIATGTFGSVIRTSVHVKCTQMKGPYYVPLFKPFGIFWATLFGTSFFV 309

Query: 176 ETPHLGSLIGTVVIAFGFYAVIWAQGKESN 205
            + H GS++G  +   G++ V W Q KES 
Sbjct: 310 NSLHYGSVLGAAIAGVGYFTVSWGQLKESE 339

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0B8|WTR37_ARATH WAT1-related protein At4g30420 OS=Arabidopsis thaliana GN=At4g30420 PE=3 SV=1

 Score =  143 bits (361), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 2   EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS--PSNSNIQLPVSEYSNWAL 59
           EK+ +R     AKI GT++ +AGA  ++L +GP +L   S  P   ++   + + + W +
Sbjct: 116 EKLNLRDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLI 175

Query: 60  GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 119
           G L L  +    + W I Q  +   YPD ++L  + C FGTIQCAVV+  +E++P+AW L
Sbjct: 176 GCLFLFSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWIL 235

Query: 120 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 179
               +    +YA I  + +  ++ AW + K+GPVF ALF PL T I   +A +F  E  +
Sbjct: 236 HSYSEFATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEEIY 295

Query: 180 LGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKI 221
            GSLIG + +  G Y V+W + K+  M      + +    KI
Sbjct: 296 TGSLIGGLGVILGLYTVLWGKAKDVMMNQDQRDNDQKSEVKI 337

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 115/206 (55%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 60
           +E + +  +   AK+LGT+VSI GA +++LY+G P+            +      +  LG
Sbjct: 148 LEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLG 207

Query: 61  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 120
            L L   C S A W + QA VLK+YP K+ L  F+CFFG IQ  V+++ VE + + W + 
Sbjct: 208 WLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIV 267

Query: 121 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 180
              +   ++YA I+ + +   +  WC+ K GPVFVA+F+PL T +   MA + LG+  + 
Sbjct: 268 SWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYS 327

Query: 181 GSLIGTVVIAFGFYAVIWAQGKESNM 206
           G ++G V I  G Y V+W + +E  +
Sbjct: 328 GGIVGAVFIMLGLYLVLWGKNEERKL 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 123/210 (58%), Gaps = 6/210 (2%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ----LPVSEYSN 56
           MEKV+ + RSS AK++GT++S+ GA +V LY GP +   SSP   N +       S  S+
Sbjct: 127 MEKVSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSD 186

Query: 57  WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PS 115
           W +GG LLT+     +   I QA ++  YP    + F      +I  +++ ++VE+N PS
Sbjct: 187 WLIGGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPS 246

Query: 116 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 175
            W ++  I    ++  AI+ T +   I +W ++ KGP+++A+FKPL   IAV M+ +FL 
Sbjct: 247 VWIIRFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLN 305

Query: 176 ETPHLGSLIGTVVIAFGFYAVIWAQGKESN 205
           ++ +LG LIG ++I  GFYAV+W +  E  
Sbjct: 306 DSLYLGCLIGGLLITLGFYAVMWGKANEEK 335

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
147778659	335	hypothetical protein VITISV_034106 [Viti	0.991	0.671	0.506	3e-57
296086518	356	unnamed protein product [Vitis vinifera]	0.986	0.629	0.508	6e-57
224135771	355	predicted protein [Populus trichocarpa]	0.995	0.636	0.478	1e-56
359473421	347	PREDICTED: auxin-induced protein 5NG4 [V	0.986	0.645	0.486	4e-56
118483285	265	unknown [Populus trichocarpa]	0.973	0.833	0.475	2e-55
357477327	353	Auxin-induced protein 5NG4 [Medicago tru	0.995	0.640	0.497	5e-55
356518605	350	PREDICTED: auxin-induced protein 5NG4-li	0.991	0.642	0.478	3e-54
255552656	358	conserved hypothetical protein [Ricinus	0.907	0.575	0.533	1e-52
224099697	355	predicted protein [Populus trichocarpa]	0.986	0.630	0.460	3e-51
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.982	0.638	0.451	1e-50

>gi|147778659|emb|CAN71719.1| hypothetical protein VITISV_034106 [Vitis vinifera]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 115/227 (50%), Positives = 154/227 (67%), Gaps = 2/227 (0%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 60
           ME++  R  SS AK +GTVVSIAGAFIV+ YKG P+L   SPSN   QL +S+ SNW  G
Sbjct: 99  MERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFG 157

Query: 61  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 120
           GLLL   C  S+ W I QA++LK+YP ++ + F+ CFF  IQ A  S+I+ER P AW L+
Sbjct: 158 GLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLK 217

Query: 121 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 180
           P  +  AV+Y+ + G V +   I WC+ +KGPVFVA+FKP+G  +A+ M V+FLG+T ++
Sbjct: 218 PSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAIAMGVIFLGDTFYM 277

Query: 181 GSLIGTVVIAFGFYAVIWAQGKESNMTTG-NVGSLESLNQKIPPLKN 226
           GSLIG  VI  GFY+V+W + KE  +     V SLES +QK P L+N
Sbjct: 278 GSLIGATVIVIGFYSVMWGKAKEEKIDEDIGVRSLESTSQKAPLLQN 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 116/228 (50%), Positives = 156/228 (68%), Gaps = 4/228 (1%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 60
           ME++  R  SS AK +GTVVSIAGAFIV+ YKG P+L   SPSN   QL +S+ SNW  G
Sbjct: 120 MERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFG 178

Query: 61  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 120
           GLLL   C  S+ W I QA++LK+YP ++ + F+ CFF  IQ A  S+I+ER P AW L+
Sbjct: 179 GLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLK 238

Query: 121 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 180
           P  +  AV+Y+ + G V +   I WC+ +KGPVFVA+FKP+G  +AV M V+FLG+T ++
Sbjct: 239 PSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYM 298

Query: 181 GSLIGTVVIAFGFYAVIWAQGKESNMTTGNVG--SLESLNQKIPPLKN 226
           GSLIG  VI  GFY+V+W + KE  +   ++G  SLES +QK P L+N
Sbjct: 299 GSLIGATVIVIGFYSVMWGKAKEEKIDE-DIGMRSLESTSQKAPLLQN 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135771|ref|XP_002322156.1| predicted protein [Populus trichocarpa] gi|222869152|gb|EEF06283.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/228 (47%), Positives = 162/228 (71%), Gaps = 2/228 (0%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN-IQLPVSEYSNWAL 59
           MEK+  RS  S+ KI+GT+VS++GA  ++LYKGP +   ++ SN + I   +S  ++W +
Sbjct: 124 MEKLDWRSSRSRIKIMGTLVSVSGALTITLYKGPAIGAITTQSNPDPIPSIMSTANSWII 183

Query: 60  GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 119
           GGL L       + +   QAA+LKEYP ++ +V F C FGTIQ ++VS+I ERNP+AWKL
Sbjct: 184 GGLFLVTADLCVSIFTTLQAAILKEYPSEMAMVSFLCLFGTIQSSIVSLIAERNPNAWKL 243

Query: 120 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 179
           +P I+  ++IY+A+VG+V+   + AWC++KKGPVFVA+FKP+G A A F+ V+FLG+T H
Sbjct: 244 RPDIELISIIYSAVVGSVVTFGVTAWCIRKKGPVFVAIFKPVGIATAAFLGVIFLGDTLH 303

Query: 180 LGSLIGTVVIAFGFYAVIWAQGKESNMTTGNV-GSLESLNQKIPPLKN 226
           +GS++G ++I  GFY VIWAQ KE   +  N   +L+SL+QK P L++
Sbjct: 304 VGSIVGAIIIVAGFYGVIWAQSKEDEHSKVNRPRNLQSLSQKTPLLES 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473421|ref|XP_002266928.2| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 153/226 (67%), Gaps = 2/226 (0%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 60
           ME++  R  SS AK +GTVVSIAGAFIV+ YKG P+L   SPSN   QL +S+ SNW  G
Sbjct: 120 MERLDWRG-SSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFG 178

Query: 61  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 120
           GLLL   C  S+ W I QA++LK+YP ++ + F+ CFF  IQ A  S+I+ER P AW L+
Sbjct: 179 GLLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLK 238

Query: 121 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 180
           P  +  AV+Y+ + G V +   I WC+ +KGPVFVA+FKP+G  +AV M V+FLG+T ++
Sbjct: 239 PSTRFIAVMYSGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYM 298

Query: 181 GSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKN 226
           GS+IG  +I  G+Y ++W Q +E +M  G  G ++S  QK+P L+ 
Sbjct: 299 GSVIGAYIIGIGYYTLMWGQIREDDMKAGGEG-IDSSEQKVPLLQE 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483285|gb|ABK93545.1| unknown [Populus trichocarpa]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 159/223 (71%), Gaps = 2/223 (0%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN-IQLPVSEYSNWAL 59
           MEK+  RS  S+ KI+GT+VS++GA  ++LYKGP +   ++ SN + I   +S  ++W +
Sbjct: 37  MEKLDWRSSRSRIKIMGTLVSVSGALTITLYKGPAIGAITTQSNPDPIPSIMSTANSWII 96

Query: 60  GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 119
           GGL L       + +   QAA+LKEYP ++ +V F C FGTIQ ++VS+I ERNP+AWKL
Sbjct: 97  GGLFLVTADLCVSIFTTLQAAILKEYPSEMAMVSFLCLFGTIQSSIVSLIAERNPNAWKL 156

Query: 120 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 179
           +P I+  ++IY+A+VG+V+   + AWC++KKGPVFVA+FKP+G A A F+ V+FLG+T H
Sbjct: 157 RPDIELISIIYSAVVGSVVTFGVTAWCIRKKGPVFVAIFKPVGIATAAFLGVIFLGDTLH 216

Query: 180 LGSLIGTVVIAFGFYAVIWAQGKESNMTTGNV-GSLESLNQKI 221
           +GS++G ++I  GFY VIWAQ KE   +  N   +L+SL+Q++
Sbjct: 217 VGSIVGAIIIVAGFYGVIWAQSKEDEHSKVNRPRNLQSLSQRL 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477327|ref|XP_003608949.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355510004|gb|AES91146.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 154/229 (67%), Gaps = 3/229 (1%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-PSNSN-IQLPVSEYSNWA 58
           MEK+   S  SQ KI+GTVVSI+GA IV+ YKG P+    + PS S      ++E SNW 
Sbjct: 126 MEKLDAGSSISQIKIVGTVVSISGALIVTFYKGAPISSIQTQPSTSQPFWSLLAETSNWV 185

Query: 59  LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK 118
           +GGL L     S A W I QA +L+ YP ++ +V F C FGTIQCA++S+IV ++P+AW 
Sbjct: 186 IGGLFLATASLSLAIWNIAQAEILRGYPSQLTIVAFYCLFGTIQCALLSLIVVKDPNAWN 245

Query: 119 LQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETP 178
           L   I+  A+IY+AI G+ +  S++ WC+ +KGPVFV +FKP+G AIA FM+V FLGET 
Sbjct: 246 LSLDIELIAIIYSAIFGSAVTFSVLTWCIDRKGPVFVTMFKPVGIAIAAFMSVAFLGETL 305

Query: 179 HLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT 227
           H+GS+IG +VIA GFY V+WAQ KE N+    V  L S +   P L++T
Sbjct: 306 HVGSVIGALVIAIGFYTVMWAQSKEKNVKGLEVDRLPS-SSSAPLLEST 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518605|ref|XP_003527969.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 109/228 (47%), Positives = 156/228 (68%), Gaps = 3/228 (1%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 60
           MEK+  R  SS AK+LGT+VSIAGAFIV+LYKGP LL   S +N++ Q  +SE SNW L 
Sbjct: 119 MEKLDWRKLSSLAKLLGTIVSIAGAFIVTLYKGPALLMGVSSANTSQQPLLSEDSNWILA 178

Query: 61  GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 120
           GL L   C  ++ + I QA++LK+YP ++ +VFF CFF  IQ AV  ++VER+ SAW L+
Sbjct: 179 GLFLAADCVMASAYIIVQASILKKYPAELIVVFFYCFFVAIQSAVTCLVVERDISAWSLE 238

Query: 121 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 180
           P ++  AV+Y+ + G+  +  II WCL + GPVFV++FKPLG  I+V + V+FLG+  +L
Sbjct: 239 PKLRLLAVLYSGVFGSAFQVGIICWCLHQTGPVFVSMFKPLGILISVVLGVLFLGDAFYL 298

Query: 181 GSLIGTVVIAFGFYAVIWAQ--GKESNMTTGNVGSLESLNQKIPPLKN 226
           GS+IGT  +  G+Y V++ Q  G E   +  +  S +SL++KIP L+ 
Sbjct: 299 GSVIGTTTLGMGYYTVMYGQIKGNEEETSCDDCSS-DSLDKKIPLLQE 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552656|ref|XP_002517371.1| conserved hypothetical protein [Ricinus communis] gi|223543382|gb|EEF44913.1| conserved hypothetical protein [Ricinus communis]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 150/208 (72%), Gaps = 2/208 (0%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN--SNIQLPVSEYSNWA 58
           ME + IR  SSQAK LG +VS+AGAF+V+LYKGP +L  +  SN   + QL  S+   W 
Sbjct: 123 METLDIRRSSSQAKSLGAIVSVAGAFVVTLYKGPAVLMTTQTSNFHHHHQLLFSQKPEWI 182

Query: 59  LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK 118
            GG LL + C  SATW + Q A +KEY + + +VFF  FF TIQ AV S+I+ERNP+AW 
Sbjct: 183 FGGFLLLIVCLLSATWNVAQGATVKEYQEPMTIVFFFTFFITIQSAVFSLILERNPNAWI 242

Query: 119 LQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETP 178
           L+  I+  A+++ A+ G++ R +I  WCL+KKGPV+VA+FKPLG AIAVFM V+FLG+T 
Sbjct: 243 LKSSIEIIAIVFTAVFGSIFRIAIHTWCLRKKGPVYVAMFKPLGIAIAVFMTVVFLGDTL 302

Query: 179 HLGSLIGTVVIAFGFYAVIWAQGKESNM 206
           +LGS+IG+++IA GFY+V+W Q KE  M
Sbjct: 303 YLGSVIGSIIIALGFYSVMWGQMKEKKM 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/228 (46%), Positives = 152/228 (66%), Gaps = 4/228 (1%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QLPVSEYSNWAL 59
           MEK+  +S S+  K  GT+VS+AGAFIV  YKGPPLL   +PS SN+    +S+  NW +
Sbjct: 125 MEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLL--MAPSTSNLPHELLSQQQNWII 182

Query: 60  GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 119
           GGLLL V C  ++ W I QA +LK+YP ++ +VFF CF  TI   +V + +ER+P AW L
Sbjct: 183 GGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAWSL 242

Query: 120 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 179
           +P ++  AV+Y+ + G+  +  +  WCL K GPVFVA+FKPLG  IA  ++++ L +T +
Sbjct: 243 KPTVRWIAVVYSGVFGSAFQVGVSTWCLHKTGPVFVAMFKPLGIVIAAAVSIICLRDTLY 302

Query: 180 LGSLIGTVVIAFGFYAVIWAQGKESNMTTGN-VGSLESLNQKIPPLKN 226
           LGSL+G  VI  GFY+V+W + KE  +   + V S ES +QK+P L++
Sbjct: 303 LGSLVGATVIVIGFYSVMWGKAKEEKVGVDDGVRSFESSSQKVPLLQS 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/228 (45%), Positives = 157/228 (68%), Gaps = 5/228 (2%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS-NSNIQLPVSEYSNWAL 59
           MEK+  R+ SS AK +GT++S+ GAFI++ YKGP +L   +PS NS+ QL +++ SNW +
Sbjct: 120 MEKLDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQL-LTQPSNWII 176

Query: 60  GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 119
           GGLLL   C  ++ W I QA +LK YP ++ +VFF CFF TI  A+V ++VER+PSAW L
Sbjct: 177 GGLLLAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSL 236

Query: 120 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 179
            P I+  +V+Y+ + G+ ++  I  WCL++ GPVFV++FKPLG  IA  + V+ LG+T +
Sbjct: 237 IPNIRLVSVLYSGVFGSALQVGISTWCLRQTGPVFVSMFKPLGIIIAAAVGVICLGDTLY 296

Query: 180 LGSLIGTVVIAFGFYAVIWAQGKES-NMTTGNVGSLESLNQKIPPLKN 226
           LGS+IGTV+   G+Y V+W Q +E       +V   ++ ++K+P L++
Sbjct: 297 LGSIIGTVICGMGYYTVMWGQAREDGKQKPHDVERADTSDEKVPLLQD 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.881	0.576	0.432	1.9e-42
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.916	0.562	0.403	2.3e-39
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.955	0.591	0.416	2.9e-39
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.951	0.555	0.355	8e-37
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.942	0.521	0.341	2.1e-36
TAIR|locus:2020688	375	UMAMIT36 "AT1G70260" [Arabidop	0.889	0.538	0.377	2.2e-34
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.898	0.532	0.370	5.8e-34
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.885	0.569	0.392	7.4e-34
TAIR|locus:2118686	373	UMAMIT34 "AT4G30420" [Arabidop	0.903	0.549	0.357	7.4e-34
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.876	0.555	0.369	6.7e-33

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 90/208 (43%), Positives = 138/208 (66%)

Query:     1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 60
             ME+V +RS ++QAKI+GT+VSI+GA ++ LYKGP LL  +S ++          S+W +G
Sbjct:   130 MEQVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFE--------SSWIIG 181

Query:    61 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ 120
             GLLL +     + W I Q  +++ YP++I +VF      T+    V ++VE++ ++W+L+
Sbjct:   182 GLLLGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLK 241

Query:   121 PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHL 180
             PG    +VIY+ +  T + S I  W L  KGPV+++LFKPL  AIAV MA +FLG+T HL
Sbjct:   242 PGFSLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHL 301

Query:   181 GSLIGTVVIAFGFYAVIWAQGKESNMTT 208
             GS+IG+V+++FGFY VIW + +E +  T
Sbjct:   302 GSVIGSVILSFGFYTVIWGKAREDSTKT 329

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 86/213 (40%), Positives = 138/213 (64%)

Query:     1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS--PSNSNIQL--PVSEY-S 55
             ME++ +RS ++QAKI+GT+VSI+GA +V LYKGP +L  +S  P +  I L   ++ + S
Sbjct:   134 MEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDS 193

Query:    56 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPS 115
             +W +GGLLL       + W I Q  V++ YP++I +VF      T+  A V +  E++ +
Sbjct:   194 SWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLN 253

Query:   116 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 175
             ++ L+PG+   +V+Y+  + +   S I  W L  KGPV+++LFKPL   IAV M VMFLG
Sbjct:   254 SFILKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLG 313

Query:   176 ETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTT 208
             +  +LGS+IG+++++ GFY VIW + +E ++ T
Sbjct:   314 DALYLGSVIGSLILSLGFYTVIWGKAREDSIKT 346

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 92/221 (41%), Positives = 130/221 (58%)

Query:     1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 60
             ME V+ +  SS AK+LGTVVSI GAFIV+LY GP ++  S PS S      S   NW LG
Sbjct:   125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS--LRSQSTNPNWILG 182

Query:    61 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNP-SAWKL 119
                L V  F    W I Q  +++EYP +  +V F     +   A+V++  E N   AWK+
Sbjct:   183 AGFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKI 242

Query:   120 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 179
             +P I   +++ + + G+ I ++I  W L+ KGP+FVA+FKPL  AIAV M V+FL ++ +
Sbjct:   243 KPNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLY 302

Query:   180 LGSLIGTVVIAFGFYAVIWAQGKESNMTTG-NVGSLESLNQ 219
             +GSLIG  VI  GFY V+W + KE  +    N  + E  N+
Sbjct:   303 IGSLIGATVITIGFYTVMWGKAKEVALVEDDNKANHEEANE 343

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 80/225 (35%), Positives = 130/225 (57%)

Query:     1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-------PSNSNIQLPVSE 53
             +EKV I  R   +KILGT + +AGA +++LYKGP +   +S        +NS +  P+  
Sbjct:   133 IEKVRINRRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGN 192

Query:    54 YS--NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVE 111
              +  NW LG + L   C S + W +FQA VLK YP ++++  ++CFFG IQ  +++   E
Sbjct:   193 AAPKNWTLGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCE 252

Query:   112 RNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAV 171
             R+  AW    G +   ++YA IV + I  ++  WC+ + GPVFVA+++P+ T +   MA 
Sbjct:   253 RDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMAS 312

Query:   172 MFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLES 216
             + LGE  +LG +IG V+I  G Y V++ + +E         +++S
Sbjct:   313 IALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQS 357

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 80/234 (34%), Positives = 129/234 (55%)

Query:     1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYS----- 55
             +EKV I  R   AKI+GTV  ++GA I++LYKGPP+     P   N+++  S +      
Sbjct:   132 LEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRP---NLEVTASYFKAFQGN 188

Query:    56 -------NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSI 108
                    NW LG + L   C + + W + QA VLK YP ++++  F+CFFG IQ  +++ 
Sbjct:   189 DLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAA 248

Query:   109 IVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVF 168
               E +   WK+  G +   ++YA  V + I  S+  WC+ + GPVFVA+++P+ T     
Sbjct:   249 FFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAI 308

Query:   169 MAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIP 222
             MA + LGE  +LG + G ++I  G Y V+W + +E  +     G L++ +  +P
Sbjct:   309 MASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRL-----GLLQAKSSMVP 357

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2020688 UMAMIT36 "AT1G70260" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 79/209 (37%), Positives = 117/209 (55%)

Query:     3 KVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSE----YS--- 55
             K+  R+ S++AK++GT+VS++GAF+  LYKGP +   SS S +     V +    Y+   
Sbjct:   130 KLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPD 189

Query:    56 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPS 115
             NW LG + L V  FS + + + Q   +K+YP  + +  F    GTIQC + S+ +ER+ S
Sbjct:   190 NWFLGCIFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMERDLS 249

Query:   116 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 175
             AWK+QP      +I     G+VIR+S+   C Q KGP +V LFKP G   A      F  
Sbjct:   250 AWKIQPNFDLYLIIATGTFGSVIRTSVHVKCTQMKGPYYVPLFKPFGIFWATLFGTSFFV 309

Query:   176 ETPHLGSLIGTVVIAFGFYAVIWAQGKES 204
              + H GS++G  +   G++ V W Q KES
Sbjct:   310 NSLHYGSVLGAAIAGVGYFTVSWGQLKES 338

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 77/208 (37%), Positives = 121/208 (58%)

Query:     1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPV-SEYSN-WA 58
             +E + +  +   AK+LGT+VSI GA +++LY+G P+  F    N   +  V S+ S+   
Sbjct:   148 LEHIDLVRKHGVAKVLGTLVSIGGATVITLYRGFPI--FDQGLNMQKEEVVGSDNSHSLT 205

Query:    59 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK 118
             LG L L   C S A W + QA VLK+YP K+ L  F+CFFG IQ  V+++ VE + + W 
Sbjct:   206 LGWLYLMGHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWI 265

Query:   119 LQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETP 178
             +    +   ++YA I+ + +   +  WC+ K GPVFVA+F+PL T +   MA + LG+  
Sbjct:   266 IVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQL 325

Query:   179 HLGSLIGTVVIAFGFYAVIWAQGKESNM 206
             + G ++G V I  G Y V+W + +E  +
Sbjct:   326 YSGGIVGAVFIMLGLYLVLWGKNEERKL 353

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 82/209 (39%), Positives = 129/209 (61%)

Query:     1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QL--PVSEY-SN 56
             MEKV+ + RSS AK++GT++S+ GA +V LY GP +   SSP   N  QL  P+S   S+
Sbjct:   127 MEKVSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSD 186

Query:    57 WALGGLLLTVT-CFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-P 114
             W +GG LLT+   F S ++ I QA ++  YP    + F      +I  +++ ++VE+N P
Sbjct:   187 WLIGGALLTIRDIFVSVSF-ILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNP 245

Query:   115 SAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFL 174
             S W ++  I    ++  AI+ T +   I +W ++ KGP+++A+FKPL   IAV M+ +FL
Sbjct:   246 SVWIIRFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFL 304

Query:   175 GETPHLGSLIGTVVIAFGFYAVIWAQGKE 203
              ++ +LG LIG ++I  GFYAV+W +  E
Sbjct:   305 NDSLYLGCLIGGLLITLGFYAVMWGKANE 333

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2118686 UMAMIT34 "AT4G30420" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 74/207 (35%), Positives = 116/207 (56%)

Query:     2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS--PSNSNIQLPVSEYSNWAL 59
             EK+ +R     AKI GT++ +AGA  ++L +GP +L   S  P   ++   + + + W +
Sbjct:   116 EKLNLRDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLI 175

Query:    60 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL 119
             G L L  +    + W I Q  +   YPD ++L  + C FGTIQCAVV+  +E++P+AW L
Sbjct:   176 GCLFLFSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWIL 235

Query:   120 QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPH 179
                 +    +YA I  + +  ++ AW + K+GPVF ALF PL T I   +A +F  E  +
Sbjct:   236 HSYSEFATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEEIY 295

Query:   180 LGSLIGTVVIAFGFYAVIWAQGKESNM 206
              GSLIG + +  G Y V+W + K+  M
Sbjct:   296 TGSLIGGLGVILGLYTVLWGKAKDVMM 322

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 78/211 (36%), Positives = 130/211 (61%)

Query:     1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QL--PVSEY-SN 56
             MEKV+ + RSS AK++GT++S+ GAF+V  Y GP +   SSP   N  QL  P+S   S+
Sbjct:   127 MEKVSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSD 186

Query:    57 WALGGLLLTVT-CFSSATWKIFQAAVLKEYPDK--INLVFFSCFFGTIQCAVVSIIVERN 113
             W +GG +LT+   F S ++ I Q  +++EYP+   +++++  C   +I  +++ ++VE+N
Sbjct:   187 WLIGGAILTIQGIFVSVSF-ILQTHIMREYPEAFTVSILYILCI--SIVTSMIGLVVEKN 243

Query:   114 -PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM 172
              PS W +   I    ++   I+ T +   I +W ++ K P+++A+FKPL   IAV M  +
Sbjct:   244 NPSIWIIHFDITLFTIVTTGII-TSVYYVIHSWAIRHKRPLYLAIFKPLSILIAVVMGTI 302

Query:   173 FLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 203
             FL ++ +LG LIG ++I  GFY V+W +  E
Sbjct:   303 FLNDSLYLGCLIGGILITLGFYVVMWGKANE 333

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028879001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (356 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-38
pfam00892	126	pfam00892, EamA, EamA-like transporter family	9e-05

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  135 bits (341), Expect = 3e-38
 Identities = 79/208 (37%), Positives = 122/208 (58%), Gaps = 6/208 (2%)

Query: 1   MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QLP---VSEYSN 56
           MEKV+ + RSS AK++GT++S+ GA +V  Y GP +   SSP   N  QL     S  S+
Sbjct: 127 MEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSD 186

Query: 57  WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PS 115
           W +GG LLT+     +   I QA ++ EYP    + F      +I  +++ ++VE+N PS
Sbjct: 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS 246

Query: 116 AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLG 175
            W +   I    ++  AI+ T +   I +W ++ KGP+++A+FKPL   IAV M  +FL 
Sbjct: 247 VWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN 305

Query: 176 ETPHLGSLIGTVVIAFGFYAVIWAQGKE 203
           ++ +LG LIG ++I  GFYAV+W +  E
Sbjct: 306 DSLYLGCLIGGILITLGFYAVMWGKANE 333

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 69  FSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAV 128
            S A + +F   +L+     +    +      I   ++  ++ +  +   L+      A+
Sbjct: 1   LSWALYFVFSKKLLERISP-LTFTAYRFLIAGILLILLLFLLRKPFALLSLK---AILAL 56

Query: 129 IYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVV 188
           +Y  + GT +   +  + L+       ++   L     + ++V+ LGE   L  L+G V+
Sbjct: 57  LYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVL 116

Query: 189 IAFGFYAVIW 198
           I  G   ++ 
Sbjct: 117 ILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.93
PRK11689	295	aromatic amino acid exporter; Provisional	99.9
PRK11272	292	putative DMT superfamily transporter inner membran	99.9
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.89
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.89
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.88
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.86
PRK15430	296	putative chloramphenical resistance permease RarD;	99.85
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.85
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.79
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.77
COG2510	140	Predicted membrane protein [Function unknown]	99.69
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.68
KOG2765	416	consensus Predicted membrane protein [Function unk	99.66
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.64
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.61
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.6
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.59
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.54
COG2962	293	RarD Predicted permeases [General function predict	99.51
PRK15430	296	putative chloramphenical resistance permease RarD;	99.47
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.4
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.35
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.33
PLN00411	358	nodulin MtN21 family protein; Provisional	99.26
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.21
KOG2766	336	consensus Predicted membrane protein [Function unk	99.21
PRK11272	292	putative DMT superfamily transporter inner membran	99.2
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.16
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.16
PRK11689	295	aromatic amino acid exporter; Provisional	99.14
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.14
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.1
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.03
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.99
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.95
KOG1580	337	consensus UDP-galactose transporter related protei	98.94
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.91
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.84
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.81
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.81
COG2962	293	RarD Predicted permeases [General function predict	98.79
KOG1581	327	consensus UDP-galactose transporter related protei	98.78
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.68
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.63
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.57
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.52
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.51
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.49
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.48
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.45
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.37
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.34
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.33
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	98.24
COG2076	106	EmrE Membrane transporters of cations and cationic	98.16
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.14
KOG1582	367	consensus UDP-galactose transporter related protei	98.14
PRK11431	105	multidrug efflux system protein; Provisional	98.1
PRK10650	109	multidrug efflux system protein MdtI; Provisional	98.07
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.04
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.04
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.03
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.0
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.94
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.74
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.69
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.56
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.48
PRK13499	345	rhamnose-proton symporter; Provisional	97.41
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.31
PRK13499	345	rhamnose-proton symporter; Provisional	97.31
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.28
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.4
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.34
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	96.16
KOG2765	416	consensus Predicted membrane protein [Function unk	96.07
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.61
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.42
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	95.33
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.1
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	94.2
KOG3912	372	consensus Predicted integral membrane protein [Gen	94.12
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	94.1
PRK02237	109	hypothetical protein; Provisional	93.79
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	93.68
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	92.87
KOG1443	349	consensus Predicted integral membrane protein [Fun	92.67
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	92.2
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	90.41
PRK09541	110	emrE multidrug efflux protein; Reviewed	88.86
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	88.68
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	88.38
KOG2766	336	consensus Predicted membrane protein [Function unk	86.88
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	85.81
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	83.99
KOG1580	337	consensus UDP-galactose transporter related protei	83.81
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	82.93

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=3.5e-27  Score=204.48  Aligned_cols=205  Identities=36%  Similarity=0.673  Sum_probs=155.3

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCC--CCCCC-CCCC-CCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFS--SPSNS-NIQL-PVSEYSNWALGGLLLTVTCFSSATWKIF   77 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~--~~~~~-~~~~-~~~~~~~~~~G~l~~l~aa~~~a~~~vl   77 (227)
                      |.+-+|||++++|++|++++++|+.++...+++.....+  .+.|. +... ......+...|++++++++++||.|+++
T Consensus       128 e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il  207 (358)
T PLN00411        128 EKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFIL  207 (358)
T ss_pred             chhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            445579999999999999999999998754443211000  00000 0000 0111233467999999999999999999


Q ss_pred             HHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh
Q 027169           78 QAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVER-NPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVA  156 (227)
Q Consensus        78 ~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s  156 (227)
                      .|+..+++|++...++|+++++++.+.+.+...++ +...|....+.....++|.+++ +.++|.+|++++++.+|++++
T Consensus       208 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as  286 (358)
T PLN00411        208 QAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLA  286 (358)
T ss_pred             HHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHH
Confidence            99998898755677888899888888777766543 2233322223335567888875 668999999999999999999


Q ss_pred             hhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccccccc
Q 027169          157 LFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMT  207 (227)
Q Consensus       157 ~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~~~~~  207 (227)
                      ++.+++|+++++++++++||++++.+++|+++|++|+++..+.++||.+++
T Consensus       287 ~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~  337 (358)
T PLN00411        287 IFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ  337 (358)
T ss_pred             HHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            999999999999999999999999999999999999999998877765443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.93  E-value=1.5e-24  Score=184.37  Aligned_cols=182  Identities=20%  Similarity=0.249  Sum_probs=143.7

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +++++|||+++++++|++++++|+.++..  +. .+               +......|+++++.++++|+.|.++.|+.
T Consensus       104 ~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~--~~-~~---------------~~~~~~~G~~l~l~aal~~a~~~v~~~~~  165 (299)
T PRK11453        104 GAFTFGERLQGKQLAGIALAIFGVLVLIE--DS-LN---------------GQHVAMLGFMLTLAAAFSWACGNIFNKKI  165 (299)
T ss_pred             HHHHhcCcCcHHHHHHHHHHHHhHHHhcc--cc-CC---------------CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999999852  11 00               01123469999999999999999999998


Q ss_pred             HhhcCcc--chHHHHHHHHHHHHHHHHHHHhcCCC---CCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh
Q 027169           82 LKEYPDK--INLVFFSCFFGTIQCAVVSIIVERNP---SAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVA  156 (227)
Q Consensus        82 ~~~~~~p--~~~~~~~~l~g~i~~~~~~~~~~~~~---~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s  156 (227)
                      .++.+++  .....++++.+.+.+...+...++..   ..+...+...|..++|+++++++++|.+|++++++.++++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s  245 (299)
T PRK11453        166 MSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVA  245 (299)
T ss_pred             hcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            6655432  34456666666655555444333221   111222335699999999999999999999999999999999


Q ss_pred             hhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          157 LFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       157 ~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      .+.+++|+++.+++++++||++++.+++|++++++|+++..+.++
T Consensus       246 ~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        246 PLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            999999999999999999999999999999999999999877654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.90  E-value=3.6e-23  Score=175.65  Aligned_cols=182  Identities=13%  Similarity=0.031  Sum_probs=134.8

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      .++++|||+++++++|++++++|+.++... +.+....       +. .. ...+...|+++++.++++||.|+++.|+.
T Consensus       109 ~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~-~~~~~~~-------~~-~~-~~~~~~~G~~~~l~aa~~~A~~~v~~k~~  178 (295)
T PRK11689        109 AVLFNGQKANWLLIPGLLLALAGVAWVLGG-DNGLSLA-------EL-IN-NIASNPLSYGLAFIGAFIWAAYCNVTRKY  178 (295)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHhHhheecC-Cccchhh-------hh-hh-ccccChHHHHHHHHHHHHHHHHHHHHhhc
Confidence            457889999999999999999999998621 1100000       00 00 00123469999999999999999999998


Q ss_pred             HhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhch
Q 027169           82 LKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPL  161 (227)
Q Consensus        82 ~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~  161 (227)
                      .++.+ |.....   ..+++.+.+.....+ .. ... .+...|..+++.++ +++++|.+|++++|+.++++++.+.++
T Consensus       179 ~~~~~-~~~~~~---~~~~~~l~~~~~~~~-~~-~~~-~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l  250 (295)
T PRK11689        179 ARGKN-GITLFF---ILTALALWIKYFLSP-QP-AMV-FSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYF  250 (295)
T ss_pred             cCCCC-chhHHH---HHHHHHHHHHHHHhc-Cc-ccc-CCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHh
Confidence            77765 454422   333334433333322 11 111 12246778888885 789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          162 GTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       162 ~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      +|+++++++++++||++++.+++|+++|+.|+++..+.++
T Consensus       251 ~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        251 TPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            9999999999999999999999999999999988865543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=172.47  Aligned_cols=173  Identities=17%  Similarity=0.179  Sum_probs=143.3

Q ss_pred             cccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027169            5 AIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKE   84 (227)
Q Consensus         5 ~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~~~~   84 (227)
                      ++|||+++++++|++++++|+.++...  ..                  .+....|+++.++++++||.|.+..|+..++
T Consensus       116 ~~~e~~~~~~~~~~~la~~Gv~ll~~~--~~------------------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~  175 (292)
T PRK11272        116 LFGIRTRKLEWLGIAIGLAGIVLLNSG--GN------------------LSGNPWGAILILIASASWAFGSVWSSRLPLP  175 (292)
T ss_pred             HhcccCchhHHHHHHHHHHhHHHHhcC--cc------------------cccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            369999999999999999999887421  10                  0123469999999999999999999997543


Q ss_pred             cCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhchHHH
Q 027169           85 YPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTA  164 (227)
Q Consensus        85 ~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv  164 (227)
                       + +...+.+++.++++.+.++....+....  ...+...|..+++++++++.++|.+|++++++.++++++.+.+++|+
T Consensus       176 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi  251 (292)
T PRK11272        176 -V-GMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPV  251 (292)
T ss_pred             -c-chHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence             3 3667788899998888777654332211  11223568899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          165 IAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       165 ~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      ++++++++++||++++.+++|+++++.|+++..++++
T Consensus       252 ~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        252 VAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999876554

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.89  E-value=5.4e-22  Score=164.99  Aligned_cols=169  Identities=20%  Similarity=0.261  Sum_probs=140.9

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +.+++|||+++++++|++++++|++++. ..+.                   .+....|++++++++++|+.+.++.|+.
T Consensus        91 ~~l~~~e~~~~~~~~gi~i~~~Gv~li~-~~~~-------------------~~~~~~G~~~~l~a~~~~a~~~~~~k~~  150 (260)
T TIGR00950        91 SDLMGKERPRKLVLLAAVLGLAGAVLLL-SDGN-------------------LSINPAGLLLGLGSGISFALGTVLYKRL  150 (260)
T ss_pred             HHHHccCCCcHHHHHHHHHHHHhHHhhc-cCCc-------------------ccccHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4678999999999999999999999985 2110                   1224679999999999999999999999


Q ss_pred             HhhcCc-cchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhc
Q 027169           82 LKEYPD-KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKP  160 (227)
Q Consensus        82 ~~~~~~-p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~  160 (227)
                      .++.+. +.....+++..+.+++.+..+..++.. ..   +...|..+++++++++.++|.+|++++++.++++++.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~  226 (260)
T TIGR00950       151 VKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILAL  226 (260)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            877652 234555778888888888776543221 11   3346888999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhh
Q 027169          161 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFY  194 (227)
Q Consensus       161 ~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~  194 (227)
                      ++|+++++++++++||++++.+++|+++++.|+.
T Consensus       227 ~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       227 AEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999863

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.89  E-value=1.6e-21  Score=165.42  Aligned_cols=171  Identities=13%  Similarity=0.056  Sum_probs=134.2

Q ss_pred             cccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 027169            7 RSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYP   86 (227)
Q Consensus         7 ~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~   86 (227)
                      +||++  +..++.++++|+.++. ..+.+                 .+.....|+++.+.++++||.|.++.|+..++.+
T Consensus       116 ~~~~~--~~~~~~i~~~Gv~li~-~~~~~-----------------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~  175 (293)
T PRK10532        116 SRRPV--DFVWVVLAVLGLWFLL-PLGQD-----------------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHG  175 (293)
T ss_pred             cCChH--HHHHHHHHHHHHheee-ecCCC-----------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            45554  4566788999998875 21111                 0112357999999999999999999999987776


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhchHHHHH
Q 027169           87 DKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIA  166 (227)
Q Consensus        87 ~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a  166 (227)
                       |... .+..+++++++.++......   ... .....|..++|++++++.++|.+|++++++.++++++.+.+++|+++
T Consensus       176 -~~~~-~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a  249 (293)
T PRK10532        176 -PATV-AIGSLIAALIFVPIGALQAG---EAL-WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALA  249 (293)
T ss_pred             -chHH-HHHHHHHHHHHHHHHHHccC---ccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHH
Confidence             4655 56677777777776654322   111 12235667789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          167 VFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       167 ~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      ++++++++||++++.+++|+++|++|++...+.+++|
T Consensus       250 ~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~  286 (293)
T PRK10532        250 AVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE  286 (293)
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999987766543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.88  E-value=4.8e-22  Score=169.25  Aligned_cols=182  Identities=13%  Similarity=0.134  Sum_probs=139.0

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +++++|||+++++++|++++++|+++.. .  .+                  .+....|+++.++++++|+.|.++.|+.
T Consensus       109 ~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~--~~------------------~~~~~~G~~~~l~a~~~~a~~~v~~k~~  167 (302)
T TIGR00817       109 SAFFLGQEFPSTLWLSLLPIVGGVALAS-D--TE------------------LSFNWAGFLSAMISNITFVSRNIFSKKA  167 (302)
T ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHhhhc-C--Cc------------------ccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999998753 1  10                  1123569999999999999999999998


Q ss_pred             Hh--hcCccchHHHHHHHHHHHHHHHHHHHhcCCCCC---ccc-----cCchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 027169           82 LK--EYPDKINLVFFSCFFGTIQCAVVSIIVERNPSA---WKL-----QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKG  151 (227)
Q Consensus        82 ~~--~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~---~~~-----~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~  151 (227)
                      .+  +.+ |...+.+++..+.+.+++++...+.....   +..     .....+...++.++.+....+.++++++++.+
T Consensus       168 ~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s  246 (302)
T TIGR00817       168 MTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVS  246 (302)
T ss_pred             hccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            77  666 69999999999999999988655431100   000     00011211222333233333346668999999


Q ss_pred             chhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccccc
Q 027169          152 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN  205 (227)
Q Consensus       152 ~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~~~  205 (227)
                      |++.+++.+++|++++++|++++||++++.+++|+++++.|+++..+.|.+|++
T Consensus       247 a~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~  300 (302)
T TIGR00817       247 PLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK  300 (302)
T ss_pred             chHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence            999999999999999999999999999999999999999999999877654433

specificities overlap.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.86  E-value=6.5e-21  Score=162.82  Aligned_cols=191  Identities=20%  Similarity=0.236  Sum_probs=151.5

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      ..+++|+|.++.|++|++++++|+.+++..+..            +++....+++...|+++++.++++||.++++.++.
T Consensus       123 S~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~------------~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~  190 (334)
T PF06027_consen  123 SFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL------------SGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKL  190 (334)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc------------ccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999999998632111            01111234567999999999999999999999999


Q ss_pred             HhhcCccchHHHHHHHHHHHHHHHHHHHhcCC-CCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhc
Q 027169           82 LKEYPDKINLVFFSCFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKP  160 (227)
Q Consensus        82 ~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~  160 (227)
                      .++.+ +.++..+..++|.++..+...+.+.. ....  .++.....+.....++....|.++...++..+|+...+-..
T Consensus       191 v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~--~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLL  267 (334)
T PF06027_consen  191 VKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESI--HWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLL  267 (334)
T ss_pred             cccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhcc--CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHH
Confidence            99988 58999999999999998887766543 2221  12223333333334466778889999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccccccc
Q 027169          161 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMT  207 (227)
Q Consensus       161 ~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~~~~~  207 (227)
                      +..+++++++++++|++++|..++|.++|+.|+++....++++.+++
T Consensus       268 Tsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~  314 (334)
T PF06027_consen  268 TSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEAR  314 (334)
T ss_pred             HhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccc
Confidence            99999999999999999999999999999999999987766554433

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.85  E-value=1.3e-20  Score=160.07  Aligned_cols=170  Identities=15%  Similarity=0.189  Sum_probs=122.1

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +.+++|||+++++++|++++++|++++....+                     . .   .++.++++++||.|.+..|+.
T Consensus       117 ~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~---------------------~-~---~~~~l~aa~~~a~~~i~~r~~  171 (296)
T PRK15430        117 GMIFLGERFRRMQWLAVILAICGVLVQLWTFG---------------------S-L---PIIALGLAFSFAFYGLVRKKI  171 (296)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC---------------------C-c---cHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999999999862100                     0 0   146788999999999999987


Q ss_pred             HhhcC-ccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhc
Q 027169           82 LKEYP-DKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKP  160 (227)
Q Consensus        82 ~~~~~-~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~  160 (227)
                      .++.. .+...+.+.+.++.+...+..   ......+...+...+..+++.++ .+.++|.+|++++++.+|+++|.+.|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~  247 (296)
T PRK15430        172 AVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQY  247 (296)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            53321 123334455555444332221   11111111111112333444455 67899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          161 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       161 ~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      ++|+++++++++++||++++.+++|+++|++|+.+...+.
T Consensus       248 l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        248 IGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988887766443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.85  E-value=7.7e-21  Score=160.30  Aligned_cols=170  Identities=12%  Similarity=0.114  Sum_probs=127.2

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +++++|||+++++++|+.++++|+.++.. ++.  .                 .....|..+++.++++|+.|.++.|+.
T Consensus       107 ~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~-~~~--~-----------------~~~~~g~~~~l~aal~~a~~~i~~k~~  166 (281)
T TIGR03340       107 ATLTLGETLSPLAWLGILIITLGLLVLGL-SRF--A-----------------QHRRKAYAWALAAALGTAIYSLSDKAA  166 (281)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhc-ccc--c-----------------ccchhHHHHHHHHHHHHHHhhhhcccc
Confidence            46789999999999999999999998852 110  0                 112357889999999999999999986


Q ss_pred             HhhcCccch----HHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 027169           82 LKEYPDKIN----LVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL  157 (227)
Q Consensus        82 ~~~~~~p~~----~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~  157 (227)
                      .++.+ |..    ...++++.+++.+.+.....+..  .+. .+...+..+++.+.+++.++|.+|++++++.++++++.
T Consensus       167 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~  242 (281)
T TIGR03340       167 ALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVA  242 (281)
T ss_pred             ccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEe
Confidence            55444 222    22333333322222222111111  111 12234667788898899999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhh
Q 027169          158 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA  195 (227)
Q Consensus       158 ~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l  195 (227)
                      +.+++|+++++++++++||++++.+++|++++++|+++
T Consensus       243 ~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       243 LRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             ecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.79  E-value=2e-18  Score=149.88  Aligned_cols=176  Identities=13%  Similarity=0.164  Sum_probs=138.8

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +++++|||++++++++++++++|+.+...  + +                  .+....|++++++++++|+.|+++.|+.
T Consensus       158 s~~~l~ek~s~~~~l~l~l~v~Gv~l~~~--~-~------------------~~~~~~G~~~~l~s~~~~a~~~i~~k~~  216 (350)
T PTZ00343        158 SILFLKQFLNLYAYLSLIPIVGGVALASV--K-E------------------LHFTWLAFWCAMLSNLGSSLRSIFAKKT  216 (350)
T ss_pred             HHHHhCCCccHHHHHHHHHHHHHHHheec--c-c------------------chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999852  1 0                  1124679999999999999999999998


Q ss_pred             HhhcC------ccchHHHHHHHHHHHHHHHHHHHhcCCC--CCc----cccCchhHHHHHHHHHHHHHHHHHHHHH----
Q 027169           82 LKEYP------DKINLVFFSCFFGTIQCAVVSIIVERNP--SAW----KLQPGIQRTAVIYAAIVGTVIRSSIIAW----  145 (227)
Q Consensus        82 ~~~~~------~p~~~~~~~~l~g~i~~~~~~~~~~~~~--~~~----~~~~~~~~~~li~l~v~~s~~~~~l~~~----  145 (227)
                      .++.+      ++.....++.+.++++++|+..+.+...  ..+    .......+..+++. ++.++++|.+|+.    
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~  295 (350)
T PTZ00343        217 MKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFY  295 (350)
T ss_pred             hcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            76532      1355666668899999998886554311  011    00011123344554 5568999999995    


Q ss_pred             HHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          146 CLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       146 ~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      ++++++|.+.+..+++.|++++++|++++||++++.+++|+++++.|++++.+.
T Consensus       296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999998764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.77  E-value=2.7e-17  Score=137.86  Aligned_cols=170  Identities=18%  Similarity=0.230  Sum_probs=133.7

Q ss_pred             ccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027169            4 VAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSN-WALGGLLLTVTCFSSATWKIFQAAVL   82 (227)
Q Consensus         4 ~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~l~~l~aa~~~a~~~vl~k~~~   82 (227)
                      +++|||++++++.++.++++|++++...   +..                ... ...|+++.+.++++|+.+.+..|+..
T Consensus       117 ~~~~e~~~~~~~~~~~~~~~Gv~lv~~~---~~~----------------~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~  177 (292)
T COG0697         117 LLLGERLSLLQILGILLALAGVLLILLG---GGG----------------GGILSLLGLLLALAAALLWALYTALVKRLS  177 (292)
T ss_pred             HHccCCCcHHHHHHHHHHHHhHHheecC---CCc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4569999999999999999999998621   110                011 46899999999999999999999887


Q ss_pred             hhcCccchHHH-HHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhch
Q 027169           83 KEYPDKINLVF-FSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPL  161 (227)
Q Consensus        83 ~~~~~p~~~~~-~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~  161 (227)
                       +.+ +..... ++..  .............. .  .......|..+.+.+++++.+++.+|++++++.++.+++.+.++
T Consensus       178 -~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
T COG0697         178 -RLG-PVTLALLLQLL--LALLLLLLFFLSGF-G--APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLL  250 (292)
T ss_pred             -CCC-hHHHHHHHHHH--HHHHHHHHHHhccc-c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence             544 455555 4444  22222222111111 1  11223468899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          162 GTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       162 ~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      +|+++++++++++||+++..+++|+++++.|+.+..++
T Consensus       251 ~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         251 EPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999998776

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.69  E-value=6.3e-16  Score=112.19  Aligned_cols=136  Identities=16%  Similarity=0.130  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHH
Q 027169           60 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR  139 (227)
Q Consensus        60 G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~  139 (227)
                      ..++++++++++++..++.|-..++.+ |...++.+.+...+.+..+.+...+.... .....+.|..++.-|+ +++++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~~~~k~~lflilSGl-a~gls   80 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAG-GEIGPKSWLFLILSGL-AGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecc-cccCcceehhhhHHHH-HHHHH
Confidence            478899999999999999999999887 69999999999888888877665542111 1124467888888896 88999


Q ss_pred             HHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          140 SSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       140 ~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      ..+|++|+++.++.++..+.-+.|+++++++++++||+++..+|+|+.+|++|+.++.+
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            99999999999999999999999999999999999999999999999999999988654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.68  E-value=2.9e-16  Score=115.69  Aligned_cols=125  Identities=22%  Similarity=0.457  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027169           69 FSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQ  148 (227)
Q Consensus        69 ~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~  148 (227)
                      ++||.+.+..|+..++.+ |...++++++.+++ +++...+.+...  ....+...+..+++.+++++.+++.+|+++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            478999999999999987 79999999999998 666665554322  12223456888899999888999999999999


Q ss_pred             ccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhh
Q 027169          149 KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  197 (227)
Q Consensus       149 ~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~  197 (227)
                      +.++++++++.+++|+++.+++++++||++++.+++|+++++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.66  E-value=8e-16  Score=130.06  Aligned_cols=190  Identities=23%  Similarity=0.324  Sum_probs=147.0

Q ss_pred             cccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027169            3 KVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVL   82 (227)
Q Consensus         3 ~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~~   82 (227)
                      .++-.||+++.|.+++.+++.|++++... +. .           +......++...|+++++++|+.||+|.++.|+-.
T Consensus       204 ~if~~e~ft~sKllav~~si~GViiVt~~-~s-~-----------~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~  270 (416)
T KOG2765|consen  204 AIFPVERFTLSKLLAVFVSIAGVIIVTMG-DS-K-----------QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKI  270 (416)
T ss_pred             HHcCcchhhHHHHHHHHHhhccEEEEEec-cc-c-----------ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35668999999999999999999998621 11 0           11123456678999999999999999999999887


Q ss_pred             hhcCccchHHHH---HHHHHHHHHHHHHHHhcC-CCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhh
Q 027169           83 KEYPDKINLVFF---SCFFGTIQCAVVSIIVER-NPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALF  158 (227)
Q Consensus        83 ~~~~~p~~~~~~---~~l~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~  158 (227)
                      .+...-+.+...   ..++..+.+.|..++... ..+.+..+...+...++..++++++++.++|.+|+-.++|..+.+-
T Consensus       271 ~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~Tlg  350 (416)
T KOG2765|consen  271 GDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLG  350 (416)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheee
Confidence            665312444333   333333444433333321 2344556566677888899999999999999999999999999999


Q ss_pred             hchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccccc
Q 027169          159 KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN  205 (227)
Q Consensus       159 ~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~~~  205 (227)
                      ..++.+.|++.+.++-|.++++.+++|.+.|++|.+.+++..+...+
T Consensus       351 mSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~  397 (416)
T KOG2765|consen  351 MSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKK  397 (416)
T ss_pred             eeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccccc
Confidence            99999999999999999999999999999999999999987654433

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.64  E-value=3.6e-15  Score=126.40  Aligned_cols=174  Identities=16%  Similarity=0.192  Sum_probs=129.5

Q ss_pred             ccccccccCcchh----hhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAK----ILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIF   77 (227)
Q Consensus         2 ~~~~l~e~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl   77 (227)
                      +++++|||.++++    ++|+++.++|++++...+ .+         + .. +. +..+...|.++.++++++|+.|.+.
T Consensus       104 ~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~-~~---------~-~~-~~-~~~~~~~Gi~~~l~sg~~y~~~~~~  170 (290)
T TIGR00776       104 GVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK-DK---------S-AG-IK-SEFNFKKGILLLLMSTIGYLVYVVV  170 (290)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc-cc---------c-cc-cc-cccchhhHHHHHHHHHHHHHHHHHH
Confidence            4578999999999    999999999988874211 00         0 00 00 0022356999999999999999999


Q ss_pred             HHHHHhhcCccchHHHHH---HHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHh-ccCch
Q 027169           78 QAAVLKEYPDKINLVFFS---CFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQ-KKGPV  153 (227)
Q Consensus        78 ~k~~~~~~~~p~~~~~~~---~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~-~~~~~  153 (227)
                      .|+.  +++ |...++.+   .++++.+..+..  .+.  .++  .+...|..++ .|++ ..+++.+|..+.+ +.+++
T Consensus       171 ~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~--~~~--~~~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~  239 (290)
T TIGR00776       171 AKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--ILA--KPL--KKYAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVA  239 (290)
T ss_pred             HHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--hcc--cch--HHHHHHHHHH-HHHH-HHHHHHHHHHHcccccchh
Confidence            9976  355 68884444   444444433322  111  111  1223344444 8887 7999999999999 99999


Q ss_pred             hhhhhhchHHHHHHHHHHHHhCCCCCchhh----hhHHHHHHHhhhhhcc
Q 027169          154 FVALFKPLGTAIAVFMAVMFLGETPHLGSL----IGTVVIAFGFYAVIWA  199 (227)
Q Consensus       154 ~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~----iG~~li~~Gv~l~~~~  199 (227)
                      +++.+.+.+|+.+++++++++||+.++.++    +|+++++.|+.+....
T Consensus       240 ~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       240 TSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999    9999999999987543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.61  E-value=2.5e-16  Score=127.78  Aligned_cols=187  Identities=17%  Similarity=0.187  Sum_probs=145.5

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      .++++||+.++...++.++.+.|+++++  +.+...++.+.     ++..+.-+....|...++.++++.|.-.++.|+.
T Consensus       141 aw~~LkE~~t~~eaL~s~itl~GVVLIv--RPpFlFG~~t~-----g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i  213 (346)
T KOG4510|consen  141 AWAFLKEPFTKFEALGSLITLLGVVLIV--RPPFLFGDTTE-----GEDSSQVEYDIPGTVAAISSVLFGASVYIILRYI  213 (346)
T ss_pred             HHHHHcCCCcHHHHHHHHHhhheEEEEe--cCCcccCCCcc-----ccccccccccCCchHHHHHhHhhhhhHHHHHHHh
Confidence            4789999999999999999999999986  45555543222     2222222334567888888999988888888988


Q ss_pred             HhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhc
Q 027169           82 LKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL-QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKP  160 (227)
Q Consensus        82 ~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~-~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~  160 (227)
                      .|+.+. +....+..+++.+..++.....+    .+.. +...+|+.++.+|++ ..+++.+..+++|+-.+..+++..|
T Consensus       214 Gk~~h~-~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~  287 (346)
T KOG4510|consen  214 GKNAHA-IMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTY  287 (346)
T ss_pred             hccccE-EEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhH
Confidence            777663 66666667777777766654333    2222 124578888999996 5799999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          161 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       161 ~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      +..++|.++.++++||.|+++.|+|+++++...+.+..+|.
T Consensus       288 ~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw  328 (346)
T KOG4510|consen  288 TDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW  328 (346)
T ss_pred             HHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence            99999999999999999999999999999987777665554

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.60  E-value=4.6e-14  Score=113.84  Aligned_cols=170  Identities=12%  Similarity=0.088  Sum_probs=135.7

Q ss_pred             cchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccch
Q 027169           11 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKIN   90 (227)
Q Consensus        11 ~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~   90 (227)
                      +.++.+.+.+++.|+.++.- .+++                 .......|..+++.+..||+.|.+..||..+..+. -.
T Consensus       118 r~~d~vwvaLAvlGi~lL~p-~~~~-----------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~  178 (292)
T COG5006         118 RLRDFVWVALAVLGIWLLLP-LGQS-----------------VWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TA  178 (292)
T ss_pred             chhhHHHHHHHHHHHHhhee-ccCC-----------------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-ch
Confidence            45677788889999999852 1211                 12335689999999999999999999998766664 77


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHH
Q 027169           91 LVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMA  170 (227)
Q Consensus        91 ~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~  170 (227)
                      -+...++.++++.+|+.....+.  .. + ...-...-+..+++++.+.|.+=..+++|.++..-+.+..++|.++.+.|
T Consensus       179 g~a~gm~vAaviv~Pig~~~ag~--~l-~-~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G  254 (292)
T COG5006         179 GVAVGMLVAALIVLPIGAAQAGP--AL-F-SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSG  254 (292)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcch--hh-c-ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHH
Confidence            88888999999999998633221  11 1 12235555778999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          171 VMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       171 ~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      ++++||++|+.||+|+.+|+.+..=..+..+|+
T Consensus       255 ~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         255 LIFLGETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence            999999999999999999998777555544433

>TIGR00688 rarD rarD protein

Probab=99.59  E-value=3.2e-14  Score=118.34  Aligned_cols=142  Identities=12%  Similarity=0.120  Sum_probs=98.2

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +++++|||++++++++++++++|++++....+                     +..    ++.+.++++|+.|.+..|+.
T Consensus       114 a~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~---------------------~~~----~~~l~aa~~~a~~~i~~~~~  168 (256)
T TIGR00688       114 GRVFLKERISRFQFIAVIIATLGVISNIVLKG---------------------SLP----WEALVLAFSFTAYGLIRKAL  168 (256)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC---------------------Cch----HHHHHHHHHHHHHHHHHhhc
Confidence            56889999999999999999999998752100                     001    35788999999999999997


Q ss_pred             HhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhch
Q 027169           82 LKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPL  161 (227)
Q Consensus        82 ~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~  161 (227)
                      .++ + +....... +.......+.. ............+...|..++++|++ +.++|.+|++++|+.++++++.+.|+
T Consensus       169 ~~~-~-~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl  243 (256)
T TIGR00688       169 KNT-D-LAGFCLET-LSLMPVAIYYL-LQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYI  243 (256)
T ss_pred             CCC-C-cchHHHHH-HHHHHHHHHHH-HHhccCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            543 3 22222211 11111111111 11111111111222368888899986 88999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027169          162 GTAIAVFMAVMF  173 (227)
Q Consensus       162 ~pv~a~l~~~~~  173 (227)
                      +|+++++++.+.
T Consensus       244 ~Pv~~~~~~~~~  255 (256)
T TIGR00688       244 GPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.54  E-value=2.7e-13  Score=115.64  Aligned_cols=192  Identities=17%  Similarity=0.257  Sum_probs=145.9

Q ss_pred             CccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 027169            1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAA   80 (227)
Q Consensus         1 ~~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~   80 (227)
                      ++.+++|+|.++++++++++-.+|+++....+.....     ++      .........|+++++++.++.+...+..++
T Consensus       107 ~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~-----~~------~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~  175 (303)
T PF08449_consen  107 LGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS-----SS------NSSSFSSALGIILLLLSLLLDAFTGVYQEK  175 (303)
T ss_pred             HHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc-----cc------ccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999998643211100     00      011122234999999999999999999999


Q ss_pred             HHhhcC-ccchHHHHHHHHHHHHHHHHHHH--hcCCCCCccc--cCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhh
Q 027169           81 VLKEYP-DKINLVFFSCFFGTIQCAVVSII--VERNPSAWKL--QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFV  155 (227)
Q Consensus        81 ~~~~~~-~p~~~~~~~~l~g~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~  155 (227)
                      ..+++. ++.+..++..+++.+..++....  ..+.......  ..+..+..++...+ ...++....++..++.+|...
T Consensus       176 ~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~  254 (303)
T PF08449_consen  176 LFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTT  254 (303)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhh
Confidence            876643 36788899999988888877766  2221111111  11123444455555 566888888899999999999


Q ss_pred             hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccccccc
Q 027169          156 ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKES  204 (227)
Q Consensus       156 s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~~  204 (227)
                      ++...+.-+.+++++++++|+++++.+|+|.++++.|..+..+.|+|++
T Consensus       255 t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  255 TIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            9999999999999999999999999999999999999999988887653

; GO: 0055085 transmembrane transport

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.51  E-value=5.6e-13  Score=109.95  Aligned_cols=171  Identities=9%  Similarity=0.107  Sum_probs=131.4

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +++|+|||+++.|+++++++.+|+.......|.                     -    -+..+.-+++|+.|-.+.|+.
T Consensus       116 G~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~---------------------l----pwval~la~sf~~Ygl~RK~~  170 (293)
T COG2962         116 GRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS---------------------L----PWVALALALSFGLYGLLRKKL  170 (293)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC---------------------C----cHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999998654321                     1    234566688999999998876


Q ss_pred             HhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhch
Q 027169           82 LKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPL  161 (227)
Q Consensus        82 ~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~  161 (227)
                      .-  + +.+-.+.-++.-.+..+.+.+................+..++..|+ .|.++..+|..+-++.+-+..+.+.|.
T Consensus       171 ~v--~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi  246 (293)
T COG2962         171 KV--D-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYI  246 (293)
T ss_pred             CC--c-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            32  2 2444445555444444444444433221011123346777788888 588999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          162 GTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       162 ~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      +|..-.+++++++||+++..+++..++|-.|+.++..+..
T Consensus       247 ~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         247 EPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999886654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.47  E-value=1.4e-12  Score=110.86  Aligned_cols=140  Identities=14%  Similarity=0.156  Sum_probs=112.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCcc-ccCchhHHHHHHHHHH
Q 027169           56 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK-LQPGIQRTAVIYAAIV  134 (227)
Q Consensus        56 ~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~-~~~~~~~~~li~l~v~  134 (227)
                      +...|.+++++++++|+...+..|.. .+.+ |.++.+++++++.+++.++....++ ..... ...+.........+.+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHHHHHHHHHH
Confidence            46789999999999999999999875 6677 7999999999998877766543321 11100 0001122233346666


Q ss_pred             HHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          135 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       135 ~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      .....+.++++++++.+++.++++.++.|++.++++++++||+++..+++|.++.++|+.++.+
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            7778999999999999999999999999999999999999999999999999999999998764

>TIGR00688 rarD rarD protein

Probab=99.40  E-value=7.1e-12  Score=104.23  Aligned_cols=136  Identities=11%  Similarity=0.141  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCC---CCccccCchh-HHHHHHHHHHH
Q 027169           60 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNP---SAWKLQPGIQ-RTAVIYAAIVG  135 (227)
Q Consensus        60 G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~---~~~~~~~~~~-~~~li~l~v~~  135 (227)
                      |.+++++++++|+...+..|.. .+.+ |.++.+++++++.+++.++.....+..   +.+....... +..+...|++ 
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-   79 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-KPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-   79 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-ccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-
Confidence            7899999999999999999984 5677 799999999999888776654432210   0111111122 3344555654 


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          136 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       136 s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      ..+.+.+++++++++++..++.+.++.|+++++++++++||++++.+++|..+.++|+.++..
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            668899999999999999999999999999999999999999999999999999999987754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.35  E-value=3.2e-11  Score=101.73  Aligned_cols=134  Identities=13%  Similarity=0.201  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHH
Q 027169           61 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS  140 (227)
Q Consensus        61 ~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~  140 (227)
                      ..+.+.++++||.+.++.|+..++.+ +  ..++.+..+++.+.++...... ...+...+ ..+...+..+.+.....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence            56789999999999999998766644 3  3466666666666666543211 12233222 234444555555778899


Q ss_pred             HHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          141 SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       141 ~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      .++++++++.+++.++.+.++.|+++.+++++++||++++.+++|..+++.|+++....
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999987653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.33  E-value=6.7e-11  Score=88.23  Aligned_cols=122  Identities=14%  Similarity=0.129  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHH
Q 027169           60 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR  139 (227)
Q Consensus        60 G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~  139 (227)
                      |.++.+.+.++-+..+++.|+..++.+. ...... .    + ......          .    .....+++|+++.+++
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~----------~----~p~~~i~lgl~~~~la   61 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAF----------G----LALRAVLLGLAGYALS   61 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHH----------h----ccHHHHHHHHHHHHHH
Confidence            7889999999999999999999888763 332221 1    0 111010          0    0123578899999999


Q ss_pred             HHHHHHHHhccCchhhhhhhchHHHHHHHHHHH--HhCCCCCchhhhhHHHHHHHhhhhhccccc
Q 027169          140 SSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM--FLGETPHLGSLIGTVVIAFGFYAVIWAQGK  202 (227)
Q Consensus       140 ~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~--~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~  202 (227)
                      +.+|.+++++.+.+.+..+....++...+.++.  ++||++|+.+++|+++|++|++++.+.++|
T Consensus        62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            999999999999999999999999888888885  899999999999999999999998865554

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.26  E-value=2.4e-10  Score=99.52  Aligned_cols=140  Identities=11%  Similarity=0.120  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHH
Q 027169           59 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI  138 (227)
Q Consensus        59 ~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~  138 (227)
                      .-.+.++..-++|+.+.++.|...++.-+|..+.++++.+++++++++++..++... ++......|..+..+|+++ .+
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-~~~~~~~~~~~l~l~g~~g-~~   90 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-LPPLSVSILSKIGLLGFLG-SM   90 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHH-HH
Confidence            346778888899999999999988775558999999999999999988866543211 1111223567777788877 56


Q ss_pred             HHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHH------hCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          139 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMF------LGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       139 ~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~------lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      .+.++++++++++++.++++.++.|++++++++++      ++|+++..+++|.++-++|+.++...+
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~  158 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH  158 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence            77789999999999999999999999999999999      699999999999999999999877544

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.21  E-value=5e-10  Score=85.69  Aligned_cols=138  Identities=14%  Similarity=0.231  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh------cCccchHHHHHHHHHHHHHHHHHHHhcCCCCC--cc-cc------Cchh
Q 027169           60 GGLLLTVTCFSSATWKIFQAAVLKE------YPDKINLVFFSCFFGTIQCAVVSIIVERNPSA--WK-LQ------PGIQ  124 (227)
Q Consensus        60 G~l~~l~aa~~~a~~~vl~k~~~~~------~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~--~~-~~------~~~~  124 (227)
                      |.++++.+.++.|+++++.|+..++      ..+|.....+....+.+.+++.+.+.+.....  .. ..      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6789999999999999999987655      23478999999999999999998877653211  10 00      1133


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          125 RTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       125 ~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      +..++..|+ .........++.+++++|...++.+.+-.+...++|++++||++++.+++|.++.++|.++..|
T Consensus        81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            455555555 4557788889999999999999999999999999999999999999999999999999987653

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.21  E-value=3e-12  Score=103.62  Aligned_cols=177  Identities=16%  Similarity=0.128  Sum_probs=139.5

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      .++|+|.|-++.|+.|+++++.|++++++.+-.             +.....++++..|+.+.+.+|.+||+.++....+
T Consensus       122 sw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~-------------agd~aggsnp~~GD~lvi~GATlYaVSNv~EEfl  188 (336)
T KOG2766|consen  122 SWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH-------------AGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFL  188 (336)
T ss_pred             HHHHHHHHHhhheeeeEEeEecceEEEEEeeec-------------cccccCCCCCccCcEEEEecceeeeeccccHHHH
Confidence            578999999999999999999999998732111             1112345678899999999999999999999999


Q ss_pred             HhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhch
Q 027169           82 LKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPL  161 (227)
Q Consensus        82 ~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~  161 (227)
                      .++.+. .+......++|+++..+-..+..+....  ..++++....+- ..++..+-|.+....+|..+++...+-..+
T Consensus       189 vkn~d~-~elm~~lgLfGaIIsaIQ~i~~~~~~~t--l~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLT  264 (336)
T KOG2766|consen  189 VKNADR-VELMGFLGLFGAIISAIQFIFERHHVST--LHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLT  264 (336)
T ss_pred             HhcCcH-HHHHHHHHHHHHHHHHHHHhhhccceee--EeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhH
Confidence            999884 8889999999999998874433333222  223323333333 344667778888888999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhh
Q 027169          162 GTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  197 (227)
Q Consensus       162 ~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~  197 (227)
                      .-.|++++  ..||=+.+|...+..+.+..|+++..
T Consensus       265 sDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs  298 (336)
T KOG2766|consen  265 SDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS  298 (336)
T ss_pred             HHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence            99999999  67888899999999999999999874

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.20  E-value=7.9e-10  Score=93.79  Aligned_cols=132  Identities=7%  Similarity=-0.014  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHH
Q 027169           61 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS  140 (227)
Q Consensus        61 ~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~  140 (227)
                      ....++..+.|+...+..|...++.+ |..++++++.+++++++++....+..   .  .+...|......|++.....+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHP---L--PTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCC---C--CcHHHHHHHHHHHHHHHHHHH
Confidence            45578889999999999998888877 79999999999999988876543321   1  123457777778887766788


Q ss_pred             HHHHHHH-hccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          141 SIIAWCL-QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       141 ~l~~~~~-~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      .+++++. ++.+++.++++.++.|+++.+++++ +||++++.+++|+++.++|+.+....
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            8889998 8899999999999999999999985 79999999999999999999987643

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.16  E-value=6.2e-10  Score=92.38  Aligned_cols=120  Identities=12%  Similarity=-0.005  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027169           71 SATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK  150 (227)
Q Consensus        71 ~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~  150 (227)
                      |+...+..|...++..+|....+++++.+.+.+.+.....         .+...+...+..+.++..+.+.++++++++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5666778888766544478889999998888777654321         1234566777788878889999999999999


Q ss_pred             CchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          151 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       151 ~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      +++.++++..++|+++.+++.+++||++++.+++|+.+.+.|+.++...
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            9999999999999999999999999999999999999999999987643

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.16  E-value=1.5e-09  Score=92.39  Aligned_cols=127  Identities=11%  Similarity=0.098  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHH
Q 027169           61 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS  140 (227)
Q Consensus        61 ~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~  140 (227)
                      .++.++++++|+...+..|...++.+ |..+.++++.++++.++++.   ...  ..      .+..++..+++.....+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~---~~~--~~------~~~~~~~~g~~~~~~~~   73 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFV---ARP--KV------PLNLLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHh---cCC--CC------chHHHHHHHHHHHHHHH
Confidence            35688999999999999999888887 79999999999876665543   110  10      12233444554455556


Q ss_pred             HHHHHHHhc-cCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          141 SIIAWCLQK-KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       141 ~l~~~~~~~-~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      .+++.+.++ .++..++++.++.|+++.+++++++||+++..+++|+++.++|+.+..+.
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            677788887 57789999999999999999999999999999999999999999988753

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.14  E-value=1.3e-09  Score=92.56  Aligned_cols=131  Identities=12%  Similarity=0.081  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHH
Q 027169           59 LGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI  138 (227)
Q Consensus        59 ~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~  138 (227)
                      .+.+++++++++|+.+.+..|...++.| |....++++..++++++++.   ..  +...   ...+..++ .+.+....
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~--~~~~---~~~~~~~~-~~~l~~~~   73 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GF--PRLR---QFPKRYLL-AGGLLFVS   73 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---cc--cccc---cccHHHHH-HHhHHHHH
Confidence            3577899999999999999999999988 79999999999988887653   11  1111   11122222 33333444


Q ss_pred             HHHHHHHHHh----ccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          139 RSSIIAWCLQ----KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       139 ~~~l~~~~~~----~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      .+.+++.+++    ..++.+++++.++.|+++.++++++++|++++.+++|+++.++|++++...
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            4555555554    467788899999999999999999999999999999999999999987754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.14  E-value=4.6e-10  Score=81.96  Aligned_cols=107  Identities=15%  Similarity=0.261  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHH
Q 027169           94 FSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMF  173 (227)
Q Consensus        94 ~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~  173 (227)
                      +++.++.+.+..+.....+..+.+.......+...+..|++....++.+|.+++++.+ ..++.+..+.|++++++++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666655332111111112234666777788777789999999999999 488899999999999999999


Q ss_pred             hCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          174 LGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       174 lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      +||+++..+++|.+++++|+.++.+.+.
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999987764

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.10  E-value=3.3e-09  Score=87.66  Aligned_cols=182  Identities=17%  Similarity=0.224  Sum_probs=121.6

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      .++++|+|++++||+++.+-++|++++-......    ++++++...+......+...|..+.+.++++-+...+..-+.
T Consensus        61 s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~----~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~  136 (244)
T PF04142_consen   61 SVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS----SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKL  136 (244)
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHheeecCCccc----cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999974221111    011111111111234557899999999999999999999888


Q ss_pred             HhhcCcc-chHHHHHHHHHHHHHHHHHHHhcCCC-CCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhh
Q 027169           82 LKEYPDK-INLVFFSCFFGTIQCAVVSIIVERNP-SAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFK  159 (227)
Q Consensus        82 ~~~~~~p-~~~~~~~~l~g~i~~~~~~~~~~~~~-~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~  159 (227)
                      .|+.+.| ..-+....++|.++.++...+.+... .+..+..  .|-...+..++...++=.+....+|+.+.-.=....
T Consensus       137 lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~--G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~  214 (244)
T PF04142_consen  137 LKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFH--GYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFAT  214 (244)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchh--hcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHH
Confidence            8875433 44445555555555555443322211 1111111  122233444445556666677778999988889999


Q ss_pred             chHHHHHHHHHHHHhCCCCCchhhhhHHHH
Q 027169          160 PLGTAIAVFMAVMFLGETPHLGSLIGTVVI  189 (227)
Q Consensus       160 ~~~pv~a~l~~~~~lgE~~~~~~~iG~~li  189 (227)
                      .+..+.+.+.+++++|.+++....+|+.++
T Consensus       215 a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  215 AVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            999999999999999999999999998753

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.03  E-value=8.5e-09  Score=87.79  Aligned_cols=121  Identities=18%  Similarity=0.209  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 027169           73 TWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGP  152 (227)
Q Consensus        73 ~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~  152 (227)
                      .+++++|...++.+.|...+++++..+.+.+.+... .. ...... .+..+|..++..|++. ...+.+.+++++++++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~   91 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SG-LPKRLK-ISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAV   91 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hC-CCCCCC-CCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccH
Confidence            445677888888666899999999998776655421 11 111111 2345788888899974 6788999999999999


Q ss_pred             hhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhh
Q 027169          153 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  197 (227)
Q Consensus       153 ~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~  197 (227)
                      +..+++..++|++++++++++++|+++..++.|.+++++|+.+..
T Consensus        92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999998754

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.99  E-value=3.4e-08  Score=85.99  Aligned_cols=127  Identities=10%  Similarity=0.051  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027169           70 SSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQK  149 (227)
Q Consensus        70 ~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~  149 (227)
                      +-..+++..|...++.|-|+.++.++++++.+.+.++........++.. .....|..++.+|++.. ..+...+.++++
T Consensus        60 ~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~-~~~~~~~~sl~~  137 (350)
T PTZ00343         60 LNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHL-FVHFGAVISMGL  137 (350)
T ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence            3345677788888888757999999999998776554322111111111 12246778888899765 457777899999


Q ss_pred             cCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          150 KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       150 ~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      .+++.++++.+++|+++++++++++||++++.+++|++++++|+.+...
T Consensus       138 ~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        138 GAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            9999999999999999999999999999999999999999999998763

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.95  E-value=1.5e-08  Score=73.79  Aligned_cols=68  Identities=15%  Similarity=-0.002  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          131 AAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       131 l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      .++++..+++.+|.+++++.+..++..+.++.++++.++|++++||++++.+++|.+++++|+.++.+
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34466788999999999999999999999999999999999999999999999999999999988754

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.94  E-value=3.7e-08  Score=79.31  Aligned_cols=184  Identities=13%  Similarity=0.155  Sum_probs=131.7

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +-++.|++-+|+|..-++..++|+++... +..-..+             ..+.....|.++.+++-..=++-....-+.
T Consensus       129 GVl~~~KsY~w~kY~cVL~IV~GValFmY-K~~Kv~g-------------~e~~t~g~GElLL~lSL~mDGlTg~~Qdri  194 (337)
T KOG1580|consen  129 GVLFAHKSYHWRKYCCVLMIVVGVALFMY-KENKVGG-------------AEDKTFGFGELLLILSLAMDGLTGSIQDRI  194 (337)
T ss_pred             ehhhhcccccHHHHHHHHHHHHHHHHhhc-cccccCC-------------CcccccchHHHHHHHHHHhcccchhHHHHH
Confidence            45678999999999999999999999853 3221111             233456789888888777666666666666


Q ss_pred             HhhcC-ccchHHHHHHHHHHHHHHHHHHHhcCCCCCc--cccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhh
Q 027169           82 LKEYP-DKINLVFFSCFFGTIQCAVVSIIVERNPSAW--KLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALF  158 (227)
Q Consensus        82 ~~~~~-~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~  158 (227)
                      ..++. ......++..+.+.+.+..-..+..+.++-.  ...-...|+-+..+++ ++.+++.+.+..+..-+|-.-|+.
T Consensus       195 ra~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSiv  273 (337)
T KOG1580|consen  195 RASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIV  273 (337)
T ss_pred             HHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEE
Confidence            55542 1244555555555555544333333221110  0001124666777787 788999999999999999999999


Q ss_pred             hchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          159 KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       159 ~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      ..+--.|+++.++++++.+++.+||+|.+++..++..=....
T Consensus       274 TTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G  315 (337)
T KOG1580|consen  274 TTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG  315 (337)
T ss_pred             eehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence            999999999999999999999999999999999988754433

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.91  E-value=1.9e-07  Score=79.44  Aligned_cols=190  Identities=13%  Similarity=0.199  Sum_probs=128.1

Q ss_pred             cccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027169            3 KVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVL   82 (227)
Q Consensus         3 ~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~~   82 (227)
                      .+++|||++++||.++.+-++|+.++-...... .+.         .......+...|....+.++++-+...+...+..
T Consensus       137 vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~-~~a---------~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiL  206 (345)
T KOG2234|consen  137 VLILRRKLSRLQWMALVLLFAGVALVQLPSLSP-TGA---------KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKIL  206 (345)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC-CCc---------cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999984211111 000         0023345678999999999999999999999988


Q ss_pred             hhcCccchH-HHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhch
Q 027169           83 KEYPDKINL-VFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPL  161 (227)
Q Consensus        83 ~~~~~p~~~-~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~  161 (227)
                      |+-..+.-+ +.-..++|.++.+...+........|.-.. ..|-...++.++....+=.+...-+|+.+--.=.....+
T Consensus       207 K~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff-~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~  285 (345)
T KOG2234|consen  207 KGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFF-YGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSV  285 (345)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCcc-ccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHH
Confidence            764323333 333344455544444433322111111100 123344444444555555556666788777766777778


Q ss_pred             HHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          162 GTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       162 ~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      ..+++.+.++.++|-++|....+|+.+++..+.+....+.+.
T Consensus       286 aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  286 AIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            899999999999999999999999999999999988555443

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.84  E-value=2.2e-07  Score=77.63  Aligned_cols=143  Identities=13%  Similarity=0.132  Sum_probs=107.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHH
Q 027169           57 WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGT  136 (227)
Q Consensus        57 ~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s  136 (227)
                      ...+....+..++.|+......|...++..++....+.+.+.+.+...+......  ........  .+......+.+..
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~   80 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEP--RGLRPALR--PWLLLLLLALLGL   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhc--cccccccc--chHHHHHHHHHHH
Confidence            4567888888889999999999998776332455555577776666333332111  00111111  1445566667678


Q ss_pred             HHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHH-HHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          137 VIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAV-MFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       137 ~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~-~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      ...+.+|+.++++.++..++.+.++.|++..++++ ++++|++++.++.|..+.+.|++++.+....+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            89999999999999999999999999999999997 66799999999999999999999998776543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.81  E-value=3.4e-09  Score=90.07  Aligned_cols=182  Identities=13%  Similarity=0.142  Sum_probs=140.7

Q ss_pred             CccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 027169            1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAA   80 (227)
Q Consensus         1 ~~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~   80 (227)
                      +++++.+|+.++..++.++....|+.+-...                     +.+-...|.+.++++.+..+..+++.|+
T Consensus       126 ~~~~~~~~~~s~~~~lsL~piv~GV~ias~~---------------------e~~fn~~G~i~a~~s~~~~al~~I~~~~  184 (316)
T KOG1441|consen  126 LSVLLLGKTYSSMTYLSLLPIVFGVAIASVT---------------------ELSFNLFGFISAMISNLAFALRNILSKK  184 (316)
T ss_pred             HHHHHhCCCCcceEEEEEEEeeeeEEEeeec---------------------cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999997531                     1223578999999999999999999998


Q ss_pred             HHh----hcCccchHHHHHHHHHHHHHH-HHHHHhcCCCC-Cccc-cCchhHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q 027169           81 VLK----EYPDKINLVFFSCFFGTIQCA-VVSIIVERNPS-AWKL-QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPV  153 (227)
Q Consensus        81 ~~~----~~~~p~~~~~~~~l~g~i~~~-~~~~~~~~~~~-~~~~-~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~  153 (227)
                      ..+    +.+ ++....++.-.+.+.++ |.....++... .+.. .+......+++.. ++...-...-++.+.+++|.
T Consensus       185 ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSal  262 (316)
T KOG1441|consen  185 LLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSAL  262 (316)
T ss_pred             hhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCch
Confidence            874    244 58888888888888888 77665544221 0011 1111123333334 34455566678889999999


Q ss_pred             hhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccccc
Q 027169          154 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN  205 (227)
Q Consensus       154 ~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~~~  205 (227)
                      .-+..+.+--++.++.|+++|++++++.+..|.++.++|++++.+.|.++++
T Consensus       263 T~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  263 TYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             hhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            9999999999999999999999999999999999999999999988776544

>TIGR00803 nst UDP-galactose transporter

Probab=98.81  E-value=3.3e-08  Score=80.54  Aligned_cols=192  Identities=14%  Similarity=0.130  Sum_probs=113.7

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCC------cCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPL------LGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK   75 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~   75 (227)
                      +..+.+||.+..|++++++...|++.....+.+..      .+-...+.+++.+......+...|....+.+.++-+...
T Consensus        22 ~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~~~~l~a~~~~~~~~  101 (222)
T TIGR00803        22 NLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSGFAG  101 (222)
T ss_pred             cccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHHHHHHHHHHHHhhhH
Confidence            45677999999999999999999886432211000      000000000000000111245678888888888877788


Q ss_pred             HHHHHHHhhcCccchHHHHH-HHHHHHHHHHHHHHhcCC-CCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q 027169           76 IFQAAVLKEYPDKINLVFFS-CFFGTIQCAVVSIIVERN-PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPV  153 (227)
Q Consensus        76 vl~k~~~~~~~~p~~~~~~~-~l~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~  153 (227)
                      +...+..++.+..+.....+ .+++.+............ ...+...  ..+....+.-++....+..+..+.+|+.++.
T Consensus       102 ~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~v~~vlk~~~~~  179 (222)
T TIGR00803       102 VYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF--IGYPTAVWIVGLLNVGGGLCIGGVVRYADNT  179 (222)
T ss_pred             HHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc--cCCchHHHHHHHHHHhcCceeeehhHHhHHH
Confidence            88777755543211111111 222222111111111111 0111100  0112222233334567777899999999999


Q ss_pred             hhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhh
Q 027169          154 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA  195 (227)
Q Consensus       154 ~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l  195 (227)
                      ..+....++++++.+++++++||+++..+++|+.+++.|+++
T Consensus       180 ~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       180 TKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            999999999999999999999999999999999999998765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.79  E-value=1e-07  Score=79.12  Aligned_cols=141  Identities=11%  Similarity=0.125  Sum_probs=114.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCcc-ccCchhHHHHHHHHHHH
Q 027169           57 WALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWK-LQPGIQRTAVIYAAIVG  135 (227)
Q Consensus        57 ~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~-~~~~~~~~~li~l~v~~  135 (227)
                      ...|.++.+.+-+.|+.--...|-+ ++.| +.++..++.+.+...+..+....++....+. ......+......++. 
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-   81 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-   81 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-
Confidence            3569999999999999999988876 6667 6999999999988888777766544322121 1122345555555664 


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          136 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       136 s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      ...-..+|.|+..+.....+|+-.|..|++.+++|.+++||+++..|++..++..+|+....+..
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            45789999999999999999999999999999999999999999999999999999999876544

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.78  E-value=6.4e-08  Score=80.55  Aligned_cols=189  Identities=15%  Similarity=0.181  Sum_probs=140.7

Q ss_pred             CccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 027169            1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAA   80 (227)
Q Consensus         1 ~~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~   80 (227)
                      |+.+..|+|.+..+.+-..+--.|+.+..+.+..+.            ...+...+...|..++...-++=+.-+....+
T Consensus       126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s------------~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~  193 (327)
T KOG1581|consen  126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDS------------SSKSGRENSPIGILLLFGYLLFDGFTNATQDS  193 (327)
T ss_pred             HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCC------------ccccCCCCchHhHHHHHHHHHHHhhHHhHHHH
Confidence            356788999999999999999999988753311110            01122345678999998888888887888777


Q ss_pred             HHhhcC-ccchHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 027169           81 VLKEYP-DKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ--PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL  157 (227)
Q Consensus        81 ~~~~~~-~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~  157 (227)
                      +.+++. ++....++..+++.+..........+..+...+.  ....++-++....+ ...++.+.++-+++-|+-.-+.
T Consensus       194 lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~-gavGQ~FI~~TI~~FGslt~t~  272 (327)
T KOG1581|consen  194 LFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTC-GAVGQLFIFYTIERFGSLTFTT  272 (327)
T ss_pred             HhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHh-hhhhhheehhhHhhcccHHHHH
Confidence            766532 2577888888887777666533222222222211  12346666677774 5689999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccccc
Q 027169          158 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  202 (227)
Q Consensus       158 ~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~  202 (227)
                      ++.+-=+++++++.+++|.++++.||+|..+++.|+.+-...|++
T Consensus       273 I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  273 IMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998777666

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.68  E-value=9.8e-07  Score=74.91  Aligned_cols=130  Identities=11%  Similarity=0.057  Sum_probs=101.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHH
Q 027169           55 SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIV  134 (227)
Q Consensus        55 ~~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~  134 (227)
                      .+...|..++++++++|+......|...++.+ |..+.++++++++++++++......     .. +...|...+..|++
T Consensus         8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~-----~~-~~~~~~~~~~~g~~   80 (293)
T PRK10532          8 LPVWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL-----RF-AKEQRLPLLFYGVS   80 (293)
T ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc-----cC-CHHHHHHHHHHHHH
Confidence            33577899999999999999999999988888 7999999999999888766422111     11 22456666667764


Q ss_pred             HHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          135 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       135 ~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                       ....+.++++++++.+++.++.+.++.|+++.+++.    |++..  ..+..+.++|+.++..
T Consensus        81 -~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         81 -LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLP  137 (293)
T ss_pred             -HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeee
Confidence             567788899999999999999999999999998873    65554  4556667788887653

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.63  E-value=6.1e-07  Score=76.12  Aligned_cols=132  Identities=10%  Similarity=0.063  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHH
Q 027169           60 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR  139 (227)
Q Consensus        60 G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~  139 (227)
                      |.++.++++++|+..-+..|+.. ..+ +.+..  ...+|.+++..+..+...+  ..  .....+..-+..|+ .-..+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~--~~--~~~~~~~~g~l~G~-~w~ig   72 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLP--EF--WALSIFLVGLLSGA-FWALG   72 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCC--cc--cccHHHHHHHHHHH-HHHhh
Confidence            57899999999999999999875 444 23333  4666776666655544321  11  11112222223333 25678


Q ss_pred             HHHHHHHHhccCchhhhhhhc-hHHHHHHHHHHHHhCCCCCchh----hhhHHHHHHHhhhhhccc
Q 027169          140 SSIIAWCLQKKGPVFVALFKP-LGTAIAVFMAVMFLGETPHLGS----LIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       140 ~~l~~~~~~~~~~~~~s~~~~-~~pv~a~l~~~~~lgE~~~~~~----~iG~~li~~Gv~l~~~~~  200 (227)
                      +.+|+.++++.+.+.+-.+.+ ++++++.+++.+++||+.+..+    ++|.+++++|++++...+
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            899999999999999988888 9999999999999999999999    999999999999975554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.57  E-value=8e-07  Score=73.21  Aligned_cols=194  Identities=13%  Similarity=0.189  Sum_probs=125.8

Q ss_pred             CccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 027169            1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAA   80 (227)
Q Consensus         1 ~~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~   80 (227)
                      +.+++.|+|-+.+|+.++++-.+|+++..+....+...  ..+.-++++..++..-+..|+.+..++-+.-|..-+....
T Consensus       108 ~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~  185 (330)
T KOG1583|consen  108 LGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQET  185 (330)
T ss_pred             HHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999986543332221  1111112223344455778887777776666666555554


Q ss_pred             HHhhcC-ccchHHHHHHHHHHHHHHHHHH-Hh------cCC----CCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027169           81 VLKEYP-DKINLVFFSCFFGTIQCAVVSI-IV------ERN----PSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQ  148 (227)
Q Consensus        81 ~~~~~~-~p~~~~~~~~l~g~i~~~~~~~-~~------~~~----~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~  148 (227)
                      .-+++. .+-+..++...+....++...- +.      ...    .+.....-+..|..++.-.+ .+..+---.+..-.
T Consensus       186 ~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L-~Qy~CikgVy~L~t  264 (330)
T KOG1583|consen  186 TYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL-TQYFCIKGVYILTT  264 (330)
T ss_pred             HHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH-HHHHHHHhhhhhhc
Confidence            433322 2467888888887776665431 10      000    01111111234555444333 34444444444556


Q ss_pred             ccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhh
Q 027169          149 KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  197 (227)
Q Consensus       149 ~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~  197 (227)
                      +.++-.+++...+-=.++.+++.+.|..+++++.|+|.+++..|-++..
T Consensus       265 e~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  265 ETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             eecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            6788889999999999999999999999999999999999999988865

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=2.1e-06  Score=72.27  Aligned_cols=182  Identities=14%  Similarity=0.179  Sum_probs=137.4

Q ss_pred             CccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 027169            1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAA   80 (227)
Q Consensus         1 ~~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~   80 (227)
                      .|..++|.|++++-+.++..-.+|.......                     +......|..|++...++-+.+.+..|+
T Consensus       120 ~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~---------------------d~sf~~~gY~w~~~n~~~~a~~~v~~kk  178 (314)
T KOG1444|consen  120 GEVLFFGKRPSNKVWASVFAMIIGSVAAAFT---------------------DLSFNLRGYSWALANCLTTAAFVVYVKK  178 (314)
T ss_pred             hHHhhcCcCchhhHHHHHHHHHHHHHhhccc---------------------cceecchhHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999998887521                     1122345999999999999999999998


Q ss_pred             HHhh--cCccchHHHHHHHHHHHHHHHHHHHhcCCCCCc--cc---cCchhHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q 027169           81 VLKE--YPDKINLVFFSCFFGTIQCAVVSIIVERNPSAW--KL---QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPV  153 (227)
Q Consensus        81 ~~~~--~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~--~~---~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~  153 (227)
                      ..+.  .. .+...++..++..+...+..++.+... ..  ..   .....+..+..-++++ ..-.+.-.++.+..+++
T Consensus       179 ~vd~~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~g-f~isy~s~~ct~~~SAt  255 (314)
T KOG1444|consen  179 SVDSANLN-KFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMG-FGISYTSFLCTRVNSAT  255 (314)
T ss_pred             hhcccccc-ceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHH-HHHHHHHHHHHhhcccc
Confidence            7554  33 367888889998888888776665311 11  11   1112355555556644 45556667899999999


Q ss_pred             hhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccccccccc
Q 027169          154 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNM  206 (227)
Q Consensus       154 ~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~~~~  206 (227)
                      .-++.+...-..+.+...++.|++.++.-.+|..+-++|-.+..+.+.++++.
T Consensus       256 T~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~  308 (314)
T KOG1444|consen  256 TTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ  308 (314)
T ss_pred             ceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence            99999988888888889999999999999999999998888888777555444

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.51  E-value=3.9e-07  Score=72.93  Aligned_cols=187  Identities=13%  Similarity=0.173  Sum_probs=134.4

Q ss_pred             CccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 027169            1 MEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAA   80 (227)
Q Consensus         1 ~~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~   80 (227)
                      +|-.++|.|.+.....+.++-+.--+.-...             |+|+.+.. ......|.+|+...+++-+.|.+..|+
T Consensus       111 gEvl~Fgg~vtsl~l~SFilMvlSS~va~w~-------------D~q~~~~~-~~~lN~GY~Wm~~NclssaafVL~mrk  176 (309)
T COG5070         111 GEVLFFGGRVTSLELLSFILMVLSSVVATWG-------------DQQASAFK-AQILNPGYLWMFTNCLSSAAFVLIMRK  176 (309)
T ss_pred             hHHHHhcCccchhhHHHHHHHHHHHHHhccc-------------hhhHHHHH-hcccCCceEEEehhhHhHHHHHHHHHH
Confidence            4778899999999888877766655544211             11111111 123456899999999999999999997


Q ss_pred             HHhh--cCccchHHHHHHHHHHHHHHHHHHHhcCC-CCCccc-cCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh
Q 027169           81 VLKE--YPDKINLVFFSCFFGTIQCAVVSIIVERN-PSAWKL-QPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVA  156 (227)
Q Consensus        81 ~~~~--~~~p~~~~~~~~l~g~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s  156 (227)
                      ..+-  .. ..+..+|..+++..++..++++.+.. +..... .+.....++..-|+ +++.-.+.-.|+++-++.+.-|
T Consensus       177 ri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-~svgiSy~saWcvrVtSSTtyS  254 (309)
T COG5070         177 RIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVTSSTTYS  254 (309)
T ss_pred             hhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-HHhhhhhccceeEeehhhhHHH
Confidence            6442  33 38889999999999999998876542 221111 11123445555666 5666677789999999999999


Q ss_pred             hhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          157 LFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       157 ~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      +.+.+.-.-..+-|.+++||+.+...+..+.+-.....+....|.++
T Consensus       255 MvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k  301 (309)
T COG5070         255 MVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK  301 (309)
T ss_pred             HHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888776555555555443

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.49  E-value=1.1e-06  Score=72.48  Aligned_cols=183  Identities=16%  Similarity=0.188  Sum_probs=126.1

Q ss_pred             ccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027169            4 VAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLK   83 (227)
Q Consensus         4 ~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~~~   83 (227)
                      -+++++++.+||+|++.-.+|++++...   +....+|        +-.+.++.+.|+++.+++-+..|+..++-.|..+
T Consensus       132 ~~Ln~ti~~~qWl~i~fv~lGlviVg~~---d~~~~~~--------p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~  200 (372)
T KOG3912|consen  132 MFLNRTITGRQWLGILFVSLGLVIVGSL---DVHLVTD--------PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLK  200 (372)
T ss_pred             HHHhcccchhhHHHHHHHHhhhheeeee---ecccccC--------CccccccchhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence            4789999999999999999999998422   1111111        1123466789999999999999999999887766


Q ss_pred             hcC-ccchHHHHHHHHHHHHHHHHHHHh----cC-CCCC-----ccc-------cCchhHHHHHHHHHHHHHHHHHHHHH
Q 027169           84 EYP-DKINLVFFSCFFGTIQCAVVSIIV----ER-NPSA-----WKL-------QPGIQRTAVIYAAIVGTVIRSSIIAW  145 (227)
Q Consensus        84 ~~~-~p~~~~~~~~l~g~i~~~~~~~~~----~~-~~~~-----~~~-------~~~~~~~~li~l~v~~s~~~~~l~~~  145 (227)
                      +.. +|...+.|..++|..++..++...    .+ ++..     +..       ....--.++...|...++..|.+--.
T Consensus       201 ~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGl  280 (372)
T KOG3912|consen  201 KSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGL  280 (372)
T ss_pred             hccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhh
Confidence            532 389999999999966665544322    11 1110     100       00001123444454444444444334


Q ss_pred             HHhc-cCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhh
Q 027169          146 CLQK-KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  197 (227)
Q Consensus       146 ~~~~-~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~  197 (227)
                      ++.+ .+++.=+++-.+-..+.=+++..+..|.++..|+.|.++.+.|.++.+
T Consensus       281 sitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  281 SITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 577777888888888888888889999999999999999999999976

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.48  E-value=1.1e-06  Score=64.50  Aligned_cols=70  Identities=14%  Similarity=0.258  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHhccCchhh-hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          132 AIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       132 ~v~~s~~~~~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      .+....++++++.+++|+.+...+ +...-+.-+.+++++++++||++|+.+++|+.+|++|+...+...+
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            444567899999999999998887 5556789999999999999999999999999999999999866553

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.45  E-value=7.6e-06  Score=70.51  Aligned_cols=141  Identities=13%  Similarity=0.108  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHH
Q 027169           60 GGLLLTVTCFSSATWKIFQAAVLKE-YPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVI  138 (227)
Q Consensus        60 G~l~~l~aa~~~a~~~vl~k~~~~~-~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~  138 (227)
                      +.++.-.-+++-+.-...+..+.++ .+.|..-+++..+.-.++..+.... ++....+.......|+..+.++++ =..
T Consensus        14 ~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~-r~~~~~~~~~~~~~~w~y~lla~~-Dv~   91 (334)
T PF06027_consen   14 VLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLY-RRGFKKWLKVLKRPWWKYFLLALL-DVE   91 (334)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhh-ccccccchhhcchhHHHHHHHHHH-HHH
Confidence            3333333344444444444433333 2224555555554433333333222 222222221122345555566774 568


Q ss_pred             HHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccccc
Q 027169          139 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  202 (227)
Q Consensus       139 ~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~  202 (227)
                      +.++++.|.++++.+.+.++.....+++++++++++++++++.+++|+.+.++|+.++...+..
T Consensus        92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence            9999999999999999999999999999999999999999999999999999999998877643

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.37  E-value=9e-08  Score=78.40  Aligned_cols=140  Identities=16%  Similarity=0.165  Sum_probs=101.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHH
Q 027169           56 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVG  135 (227)
Q Consensus        56 ~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~  135 (227)
                      ....|.++..++ .++....++.++..+..  |.+..-.++++-.++..+........    ...+...-.+++.=|+.+
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~~----v~gp~g~R~~LiLRg~mG  107 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQP----VIGPEGKRKWLILRGFMG  107 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEeee----eecCCCcEEEEEeehhhh
Confidence            456788888888 77777788888776553  47776666555444444333221111    111222233344445544


Q ss_pred             HHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          136 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       136 s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      + .+..+++++.++++-+.+..+.+..|+++.+++|.+++|+.+....+|..+.+.|++++.|++--.
T Consensus       108 ~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlF  174 (346)
T KOG4510|consen  108 F-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLF  174 (346)
T ss_pred             h-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCccc
Confidence            3 667788899999999999999999999999999999999999999999999999999998877543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.34  E-value=2.6e-05  Score=64.98  Aligned_cols=169  Identities=16%  Similarity=0.189  Sum_probs=109.1

Q ss_pred             cccccccCcchhhh----hHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 027169            3 KVAIRSRSSQAKIL----GTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQ   78 (227)
Q Consensus         3 ~~~l~e~~~~~~~~----g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~   78 (227)
                      .++|+|-.+..+++    ++++-++|+++-...+..         ++    ...+..+...|.+..+.+.+.|..|.++.
T Consensus        91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~---------~~----~~~~~~~~~kgi~~Ll~stigy~~Y~~~~  157 (269)
T PF06800_consen   91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK---------SD----KSSSKSNMKKGILALLISTIGYWIYSVIP  157 (269)
T ss_pred             HhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc---------cc----ccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            46788877776654    666666677665422111         11    01123456779999999999999999997


Q ss_pred             HHHHhhcCccchHHHHHHHHHHHHH-HHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 027169           79 AAVLKEYPDKINLVFFSCFFGTIQC-AVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL  157 (227)
Q Consensus        79 k~~~~~~~~p~~~~~~~~l~g~i~~-~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~  157 (227)
                      |..  +.+ |.+..+-+.+ |.++. +++..+.++...     ....|.- +.-|++ =.++..+|..+.++.+.+..=.
T Consensus       158 ~~~--~~~-~~~~~lPqai-Gm~i~a~i~~~~~~~~~~-----~k~~~~n-il~G~~-w~ignl~~~is~~~~G~a~af~  226 (269)
T PF06800_consen  158 KAF--HVS-GWSAFLPQAI-GMLIGAFIFNLFSKKPFF-----EKKSWKN-ILTGLI-WGIGNLFYLISAQKNGVATAFT  226 (269)
T ss_pred             Hhc--CCC-hhHhHHHHHH-HHHHHHHHHhhccccccc-----ccchHHh-hHHHHH-HHHHHHHHHHhHHhccchhhhh
Confidence            763  334 4666655443 22222 222222211111     1112222 333442 3467778899999999999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCCch----hhhhHHHHHHHhhh
Q 027169          158 FKPLGTAIAVFMAVMFLGETPHLG----SLIGTVVIAFGFYA  195 (227)
Q Consensus       158 ~~~~~pv~a~l~~~~~lgE~~~~~----~~iG~~li~~Gv~l  195 (227)
                      +..+.++.+.+.|.+++||+=+..    .++|+++++.|..+
T Consensus       227 lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  227 LSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999997765    45788888887664

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.33  E-value=4e-06  Score=60.74  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHhccCchhh-hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          132 AIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       132 ~v~~s~~~~~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      .+.+..++++++..++++.+...+ +...-+..+.+++++++++||++++.+++|+.+|++|+...+...
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344567889999999999988877 666778889999999999999999999999999999999986544

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=98.24  E-value=6.1e-05  Score=56.88  Aligned_cols=131  Identities=14%  Similarity=0.094  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHH
Q 027169           61 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRS  140 (227)
Q Consensus        61 ~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~  140 (227)
                      .++++.+..+.++...++.++.++..+|+..+++.+..|.+.+..+..+.++.  .....+...|+... -|++ ....-
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence            56788888999999999999988876689999999999999998888776653  22211111133222 3553 44666


Q ss_pred             HHHHHHHhccCchhh-hhhhchHHHHHHHHHHH----HhCCCCCchhhhhHHHHHHHhhh
Q 027169          141 SIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVM----FLGETPHLGSLIGTVVIAFGFYA  195 (227)
Q Consensus       141 ~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~----~lgE~~~~~~~iG~~li~~Gv~l  195 (227)
                      ....+.+++.+++.. .....-+-+.+++++.+    .-++++++.+++|++++++|+++
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            777888899998866 55566788889999986    45678999999999999999864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=98.16  E-value=1.5e-05  Score=56.86  Aligned_cols=65  Identities=18%  Similarity=0.300  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhccCchhh-hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          135 GTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       135 ~s~~~~~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      +..++|.+...++|+++...+ +...-...+.+++.|+++|||++++.+++|..++++|+...+..
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            456889999999999988877 88889999999999999999999999999999999999987654

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.14  E-value=3e-06  Score=72.20  Aligned_cols=193  Identities=12%  Similarity=0.193  Sum_probs=97.4

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      .+.++|||++++.++|+.+.++|.++++.. ++.....   .+-++-.....+..+ ....... ..+...+.....++.
T Consensus        94 a~~~l~e~~~~~~~~G~~l~i~G~~liv~~-~~~~~~~---~t~~~l~~~~~~~~f-l~y~~~~-~~~~~~L~~~~~~r~  167 (300)
T PF05653_consen   94 ARFFLGEKLTRRDIVGCALIILGSVLIVIF-APKEEPI---HTLDELIALLSQPGF-LVYFILV-LVLILILIFFIKPRY  167 (300)
T ss_pred             hHHHhcccchHhHHhhHHHHHhhheeeEEe-CCCCCCc---CCHHHHHHHhcCcce-ehhHHHH-HHHHHHHHHhhcchh
Confidence            578999999999999999999999987633 2211110   000000000000111 1111111 112222222222222


Q ss_pred             HhhcCccchHHHHHHHHHHHHHHH---HHHHhcCCC-CCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 027169           82 LKEYPDKINLVFFSCFFGTIQCAV---VSIIVERNP-SAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL  157 (227)
Q Consensus        82 ~~~~~~p~~~~~~~~l~g~i~~~~---~~~~~~~~~-~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~  157 (227)
                      .++ . .+.......++|+...+.   ++....... .+..+.....|..++.+ +.+...-....++++++.+++.+.+
T Consensus       168 g~~-~-i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P  244 (300)
T PF05653_consen  168 GRR-N-ILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVP  244 (300)
T ss_pred             ccc-c-eEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEe
Confidence            121 1 232222333344332222   111111111 11112112234333333 3344556667788999999998866


Q ss_pred             hhch-HHHHHHHHHHHHhCCC--CCc----hhhhhHHHHHHHhhhhhcccccc
Q 027169          158 FKPL-GTAIAVFMAVMFLGET--PHL----GSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       158 ~~~~-~pv~a~l~~~~~lgE~--~~~----~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      ..|. -..++++-|.++++|.  .++    ....|+.+++.|+++....|+++
T Consensus       245 ~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~  297 (300)
T PF05653_consen  245 VYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKE  297 (300)
T ss_pred             ehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchh
Confidence            6554 5667777788889985  444    34577888889999987666544

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.14  E-value=5.9e-05  Score=62.30  Aligned_cols=182  Identities=12%  Similarity=0.179  Sum_probs=135.2

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      +.++-++|-......+..+-.+|.++..+-+.                 ..+++-...|..+.-++-++=|.--.+..+.
T Consensus       150 gifIqGkRY~v~d~~aA~lm~lGli~FTLADs-----------------~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~  212 (367)
T KOG1582|consen  150 GIFIQGKRYGVHDYIAAMLMSLGLIWFTLADS-----------------QTSPNFNLIGVMMISGALLADAVIGNVQEKA  212 (367)
T ss_pred             eeeeccccccHHHHHHHHHHHHHHHhhhhccc-----------------ccCCCcceeeHHHHHHHHHHHHHhhHHHHHH
Confidence            45667888899999999999999999864321                 1223445678888777777777665555555


Q ss_pred             HhhcC-ccchHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---CchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 027169           82 LKEYP-DKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQ---PGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL  157 (227)
Q Consensus        82 ~~~~~-~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~---~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~  157 (227)
                      .+..+ +..+..++...+|.+.++.......+-++.|.+.   |.......++.+. .+.++.......++.-|+..++.
T Consensus       213 m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aat  291 (367)
T KOG1582|consen  213 MKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAAT  291 (367)
T ss_pred             HhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHH
Confidence            55543 2367778888888887776665555545555432   2223344444444 56778888888888899999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          158 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       158 ~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      ....---.++++++++|-.++|....-|+.+++.|+++-.++|+
T Consensus       292 vTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  292 VTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            99999999999999999999999999999999999999888773

>PRK11431 multidrug efflux system protein; Provisional

Probab=98.10  E-value=2.3e-05  Score=56.24  Aligned_cols=66  Identities=17%  Similarity=0.389  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHhccCchhh-hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          133 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       133 v~~s~~~~~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      +.+...++++...++|+.+...+ +...-+..+.+.+.|++++||++++.+++|+.++++|+...+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            34567899999999999998877 8888899999999999999999999999999999999998753

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=98.07  E-value=2.3e-05  Score=56.55  Aligned_cols=63  Identities=16%  Similarity=0.232  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHhccCchhh-hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhh
Q 027169          135 GTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  197 (227)
Q Consensus       135 ~s~~~~~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~  197 (227)
                      +..+++++...++|+.+...+ +...-...+.+++.+++++||++++.+++|+.+++.|+...+
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            456899999999999998877 888889999999999999999999999999999999998864

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.04  E-value=0.00023  Score=60.71  Aligned_cols=126  Identities=13%  Similarity=0.180  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhh-cCc--cchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027169           74 WKIFQAAVLKE-YPD--KINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKK  150 (227)
Q Consensus        74 ~~vl~k~~~~~-~~~--p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~  150 (227)
                      +.++..+..++ ...  |..+++.++.+..+...+.........  ..   ...+......++ ...++..+-+.++++.
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~-~~~~~~~~~~~al~~i   88 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK--SR---KIPLKKYAILSF-LFFLASVLSNAALKYI   88 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC--CC---cChHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence            34444444333 222  578888888888877766654433111  11   112334444555 4567888999999999


Q ss_pred             CchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccccc
Q 027169          151 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN  205 (227)
Q Consensus       151 ~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~~~  205 (227)
                      +...-.++-...|+..++++++++|++.+..++++.+++.+|+.+....+.+..+
T Consensus        89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   89 SYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             ChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            9999999999999999999999999999999999999999999998876654433

; GO: 0055085 transmembrane transport

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.04  E-value=0.00014  Score=61.00  Aligned_cols=171  Identities=13%  Similarity=0.161  Sum_probs=120.9

Q ss_pred             ccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027169            6 IRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLKEY   85 (227)
Q Consensus         6 l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~   85 (227)
                      -=||+++.-..-+++..+|+++.+.. ..                    .-...|..+.+.+.++-++-+...+...++.
T Consensus       132 ~lEk~~w~L~l~v~lI~~Glflft~K-sT--------------------qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~  190 (349)
T KOG1443|consen  132 KLEKFRWALVLIVLLIAVGLFLFTYK-ST--------------------QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQ  190 (349)
T ss_pred             HhHHHHHHHHHHHHHHhhheeEEEec-cc--------------------ceeehhHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence            34788888888888888888887632 11                    1246788888888888777777777766654


Q ss_pred             C----ccchHHHHHHHHHHHHHHHHHHHhcCCCC-----CccccCc-hhHHHHHHHHHHHHHHHHHHH---HHHHhccCc
Q 027169           86 P----DKINLVFFSCFFGTIQCAVVSIIVERNPS-----AWKLQPG-IQRTAVIYAAIVGTVIRSSII---AWCLQKKGP  152 (227)
Q Consensus        86 ~----~p~~~~~~~~l~g~i~~~~~~~~~~~~~~-----~~~~~~~-~~~~~li~l~v~~s~~~~~l~---~~~~~~~~~  152 (227)
                      |    .|++..+...-.-.+.+++..+..++...     .+..... ..+..+.+++. +...++.+-   +..+.+++.
T Consensus       191 ~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~  269 (349)
T KOG1443|consen  191 PSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSS  269 (349)
T ss_pred             ccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccc
Confidence            4    36777776666667777777777766422     2222222 23444444444 333444433   345667888


Q ss_pred             hhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          153 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       153 ~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      -..++..-.--+-..+++..+.+|+++..-|+|..+...|+.+..+
T Consensus       270 ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  270 LTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            8899999999999999999999999999999999999999999844

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.03  E-value=5.5e-05  Score=64.48  Aligned_cols=121  Identities=19%  Similarity=0.119  Sum_probs=88.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHH
Q 027169           55 SNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIV  134 (227)
Q Consensus        55 ~~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~  134 (227)
                      .++..|..+++.++++.+....+.|+...+.+. -....-..        ...+           ..+..|+.    |+.
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~~~--------~~~~-----------l~~~~W~~----G~~   58 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAGSG--------GRSY-----------LRRPLWWI----GLL   58 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccch--------hhHH-----------HhhHHHHH----HHH
Confidence            347889999999999999999999998776542 11100000        0000           01112332    333


Q ss_pred             HHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          135 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       135 ~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      ...++..+-..++...+++.++++..+.-++..+++..++||+++...++|+++++.|..++...
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            34455566677888899999999999999999999999999999999999999999999876543

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=4.9e-06  Score=68.58  Aligned_cols=187  Identities=13%  Similarity=0.086  Sum_probs=126.9

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      ..+++|+|-+..-..++++.+.|--+=+       +        |   ++..+.-...|.++...+.++-|++.+..|+.
T Consensus       146 tyvllkqkTs~~~~~~C~lIi~GF~lGv-------d--------q---E~~~~~ls~~GvifGVlaSl~vAlnaiytkk~  207 (347)
T KOG1442|consen  146 TYVLLKQKTSFFALGCCLLIILGFGLGV-------D--------Q---EGSTGTLSWIGVIFGVLASLAVALNAIYTKKV  207 (347)
T ss_pred             HHhhcccccccccceeehhheehheecc-------c--------c---ccccCccchhhhHHHHHHHHHHHHHHHhhhee
Confidence            3467888877766655554444433321       1        1   11223446789999999999999999999976


Q ss_pred             HhhcC-ccchHHHHHHHHHHHHHHHHHHHhcCCCC--Cc-cccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 027169           82 LKEYP-DKINLVFFSCFFGTIQCAVVSIIVERNPS--AW-KLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL  157 (227)
Q Consensus        82 ~~~~~-~p~~~~~~~~l~g~i~~~~~~~~~~~~~~--~~-~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~  157 (227)
                      ..... .-..++++..+.+.+.+++...+...-..  .+ +.+..+.|..+..-|+++-.++|. -.+-+|-++|..=.+
T Consensus       208 l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyv-Tg~QIK~TSplThnI  286 (347)
T KOG1442|consen  208 LPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYV-TGWQIKVTSPLTHNI  286 (347)
T ss_pred             cccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhe-eeEEEEecccceeee
Confidence            44322 23677888899998888887765533211  11 122235677777777765544443 244556667766666


Q ss_pred             hhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccccccc
Q 027169          158 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMT  207 (227)
Q Consensus       158 ~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~~~~~  207 (227)
                      -..--...=.++++.+.+|+-+..-|-|-.++++|-....+-|++|++.+
T Consensus       287 SgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~  336 (347)
T KOG1442|consen  287 SGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA  336 (347)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence            66666666778889999999999999999999999999988888776543

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.94  E-value=0.00041  Score=52.71  Aligned_cols=140  Identities=12%  Similarity=0.089  Sum_probs=98.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHH
Q 027169           58 ALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTV  137 (227)
Q Consensus        58 ~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~  137 (227)
                      .+..++.+.+..+.....-++.++.+...+|+...++.+..|.+.+..+..+.++.+ .+......-|+..+ -|+++. 
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~~-GG~lGa-   80 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAWI-GGLLGA-   80 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHHH-ccchhh-
Confidence            456788899999999999999999888777899999999999999998888754332 22211111122221 123222 


Q ss_pred             HHHHHHHHHHhccCch-hhhhhhchHHHHHHHHHHHHhC----CCCCchhhhhHHHHHHHhhhhhccc
Q 027169          138 IRSSIIAWCLQKKGPV-FVALFKPLGTAIAVFMAVMFLG----ETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       138 ~~~~l~~~~~~~~~~~-~~s~~~~~~pv~a~l~~~~~lg----E~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      +--..-....+|.+++ .+.....-+-+.+++++.+=+.    .++++..++|++++++|+++..+++
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~  148 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG  148 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            2222334455676665 5678888899999999987554    6789999999999999966655443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.74  E-value=8.5e-05  Score=58.69  Aligned_cols=179  Identities=15%  Similarity=0.179  Sum_probs=123.4

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      .++.+|+|...-|+++.++++.|++++...+..                   -.+.+.|+.++.++++.-|+|.++.|+.
T Consensus        97 a~IVL~D~~~~~kIlaailAI~GiVmiay~DN~-------------------~a~e~iGi~~AV~SA~~aAlYKV~FK~~  157 (290)
T KOG4314|consen   97 AIIVLGDRFMGFKILAAILAIGGIVMIAYADNE-------------------HADEIIGIACAVGSAFMAALYKVLFKMF  157 (290)
T ss_pred             HHHHhccchhhhhHHHHHHHhCcEEEEEeccch-------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            457789999999999999999999998522111                   1335889999999999999999999988


Q ss_pred             HhhcCccchHHHHHHHHHHHHHHHHHH---Hh-cCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 027169           82 LKEYPDKINLVFFSCFFGTIQCAVVSI---IV-ERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL  157 (227)
Q Consensus        82 ~~~~~~p~~~~~~~~l~g~i~~~~~~~---~~-~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~  157 (227)
                      ....+ -=+..-....+|..=+...++   +. ....+.|+.....-|..+...+.+ +.....+.+.++....|-..|.
T Consensus       158 iGnAn-~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L-~lAFN~~iN~GiaL~~PilISi  235 (290)
T KOG4314|consen  158 IGNAN-FGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGL-SLAFNFLINFGIALLNPILISI  235 (290)
T ss_pred             hccCc-chhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHH-HHHHhhheeehhhhhchhhhee
Confidence            76643 123333334444332222111   00 011122321111226666666554 3345667788899999999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          158 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       158 ~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      -.....+--..++.++-+-..+-....|..+|..|..+...+..
T Consensus       236 G~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d  279 (290)
T KOG4314|consen  236 GMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED  279 (290)
T ss_pred             hheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence            99999899999998876667788888999999999998765543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.69  E-value=0.00014  Score=51.12  Aligned_cols=57  Identities=25%  Similarity=0.392  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHhccCchhh-hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHH
Q 027169          133 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI  189 (227)
Q Consensus       133 v~~s~~~~~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li  189 (227)
                      +.+.+++++++.+++|+.+...+ +...-+..+...+.|++++||++|+.+++|+.+|
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33567899999999999999888 6667799999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.56  E-value=0.00056  Score=56.63  Aligned_cols=68  Identities=10%  Similarity=0.148  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          136 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       136 s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      ..+...+.+.++++.+|+.-.++..+..+++.+++++++|.+++..||++..+..+|+.+........
T Consensus        27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            45677888999999999999999999999999999999999999999999999999999987666544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.48  E-value=0.0016  Score=54.46  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhh-chHHHHHHHHHHHH
Q 027169           95 SCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVMF  173 (227)
Q Consensus        95 ~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~-~~~pv~a~l~~~~~  173 (227)
                      .+.+|++++....++..++  .+.. +...+..-+..|++ =.+++...+.++++.+.+++.+++ -++-+.+.++++++
T Consensus        18 G~t~Gali~alv~~~~~~p--~~~~-~~~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~   93 (269)
T PF06800_consen   18 GTTIGALIFALVVFLFRQP--AFSM-SGTSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLF   93 (269)
T ss_pred             HHHHHHHHHHHHHHHHhCC--Ccch-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhh
Confidence            3555666666555544332  2211 11234444555553 458999999999999999999888 56777789999999


Q ss_pred             hCCCCCchhh----hhHHHHHHHhhhhhcccccccc
Q 027169          174 LGETPHLGSL----IGTVVIAFGFYAVIWAQGKESN  205 (227)
Q Consensus       174 lgE~~~~~~~----iG~~li~~Gv~l~~~~~~~~~~  205 (227)
                      |||.-+..++    ++.+++++|+++..++++++++
T Consensus        94 fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   94 FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence            9998776654    3677888999999888776654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.41  E-value=0.025  Score=49.06  Aligned_cols=177  Identities=16%  Similarity=0.071  Sum_probs=99.9

Q ss_pred             chhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH-------HHHHHHHh-
Q 027169           12 QAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWK-------IFQAAVLK-   83 (227)
Q Consensus        12 ~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~-------vl~k~~~~-   83 (227)
                      ..-.+|+++.++|+++...- +.    .+|+++++   +...+.+...|.++++++.+.++.|+       ...+...+ 
T Consensus       135 ~~~~~gv~liliGi~l~s~A-g~----~k~~~~~~---~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~  206 (345)
T PRK13499        135 RMTLLGVLVALIGVAIVGRA-GQ----LKERKMGI---KKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAAL  206 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-hh----hccccccc---ccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc
Confidence            34677888888999987531 10    01111110   00123567889999999999999999       55443212 


Q ss_pred             hcCccchHHHHHHH---HHHHHHH-HHHHHh--c-CCCCCccc--cCchhHHHH----HHHHHHHHHHHHHHHHHHHhcc
Q 027169           84 EYPDKINLVFFSCF---FGTIQCA-VVSIIV--E-RNPSAWKL--QPGIQRTAV----IYAAIVGTVIRSSIIAWCLQKK  150 (227)
Q Consensus        84 ~~~~p~~~~~~~~l---~g~i~~~-~~~~~~--~-~~~~~~~~--~~~~~~~~l----i~l~v~~s~~~~~l~~~~~~~~  150 (227)
                      +.+ |.....-++.   .|+.+.- .++.+.  + +.......  .+...+..-    +..|+ .=.+++.+|.++-++.
T Consensus       207 g~~-~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~  284 (345)
T PRK13499        207 GVD-PLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKL  284 (345)
T ss_pred             CCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence            233 3433333333   4444332 222221  1 22111111  111111222    22233 2345677888888887


Q ss_pred             Cchhhhh---hh-chHHHHHHHHHHHHhCCCCC------chhhhhHHHHHHHhhhhhcc
Q 027169          151 GPVFVAL---FK-PLGTAIAVFMAVMFLGETPH------LGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       151 ~~~~~s~---~~-~~~pv~a~l~~~~~lgE~~~------~~~~iG~~li~~Gv~l~~~~  199 (227)
                      +......   +. .+..+++.+.|. ++||.=+      ...++|++++++|..++...
T Consensus       285 g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        285 GAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             CCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            6554433   44 777799999998 5999866      45789999999999887654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.31  E-value=0.0017  Score=47.05  Aligned_cols=109  Identities=8%  Similarity=0.034  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 027169           66 VTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAW  145 (227)
Q Consensus        66 ~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~  145 (227)
                      +.++.|+.-+.+.|+..+..+. ..-.. +..-.. ..+.                 ..|-..+  .+.....+..+|++
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~-~~~~~-~~~~~~-~~Ll-----------------~n~~y~i--pf~lNq~GSv~f~~   60 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEK-VKASL-QLLQEI-KFLL-----------------LNPKYII--PFLLNQSGSVLFFL   60 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCC-ccchH-HHHHHH-HHHH-----------------HhHHHHH--HHHHHHHHHHHHHH
Confidence            4568899999999999877653 33221 222111 1111                 0122222  33335577888999


Q ss_pred             HHhccCchhhhhh-hchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhh
Q 027169          146 CLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV  196 (227)
Q Consensus       146 ~~~~~~~~~~s~~-~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~  196 (227)
                      .+++.+-+.+.+. +.+.=+++++.++++.+|..++..++|.++++.|+.++
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            9999999998888 58999999999988887888889999999999998764

Many members are annotated as potential transmembrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.31  E-value=0.0024  Score=55.26  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=92.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHH-----HhcCCC-CCccccCchhHHHHH
Q 027169           56 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSI-----IVERNP-SAWKLQPGIQRTAVI  129 (227)
Q Consensus        56 ~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~-----~~~~~~-~~~~~~~~~~~~~li  129 (227)
                      +...|.++.+++++||+.+.+-.|+ .++.+  .+.. |-  .++++..++..     +..++. ......+...+..-+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~--v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS--VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence            3678999999999999999999998 35543  4433 43  33333333322     111111 112222333455545


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhh-hhhhchHHHHHHHHHHHHhCCCC---C----chhhhhHHHHHHHhhhhhcc
Q 027169          130 YAAIVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETP---H----LGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       130 ~l~v~~s~~~~~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~~lgE~~---~----~~~~iG~~li~~Gv~l~~~~  199 (227)
                      ..|++ =.++...+..++|+.+.++. .+-.-++-+.+.+++.+++||-.   +    ...++|.+++++|+.++.+.
T Consensus        78 l~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         78 LFGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            55554 35899999999999999977 45556889999999999999754   2    24678899999999999873

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.28  E-value=0.00052  Score=58.68  Aligned_cols=127  Identities=20%  Similarity=0.282  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHh--hcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027169           71 SATWKIFQAAVLK--EYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQ  148 (227)
Q Consensus        71 ~a~~~vl~k~~~~--~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~  148 (227)
                      ....+++.|+..+  ..+-|...+..+...+.+....... ....+. .+..+...|..++-+|++ ..++..+-+.+++
T Consensus        29 ~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~-l~~~~~-~~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~  105 (316)
T KOG1441|consen   29 SVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKV-LKLVPP-SKISSKLPLRTLLPLGLV-FCISHVLGNVSLS  105 (316)
T ss_pred             heeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHH-hcCCCC-CccccccchHHHHHHHHH-HHHHHHhcchhhh
Confidence            3344566777777  5666788888855655555544443 222211 122233568889999995 5699999999999


Q ss_pred             ccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          149 KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       149 ~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      +.+....-+.-.++|++.+++++++.+|+.++..+.-...++.|+.+..+.+
T Consensus       106 ~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e  157 (316)
T KOG1441|consen  106 YVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE  157 (316)
T ss_pred             ccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc
Confidence            9999999999999999999999999999999988777777777777665543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.0015  Score=55.38  Aligned_cols=196  Identities=12%  Similarity=0.141  Sum_probs=102.6

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV   81 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~   81 (227)
                      ...++|||++....+|+.++++|-.+++.. .|...   +..+-++-..-..+..+ +.....++..++.-.+.+--|+.
T Consensus       108 a~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h-aP~e~---~i~t~~el~~~~~~~~F-liy~~~iil~~~il~~~~~p~~g  182 (335)
T KOG2922|consen  108 ASFFLKEKLNLLGILGCVLCVVGSTTIVIH-APKEQ---EIESVEEVWELATEPGF-LVYVIIIILIVLILIFFYAPRYG  182 (335)
T ss_pred             HHHHHHHHHHHhhhhheeEEecccEEEEEe-cCccc---ccccHHHHHHHhcCccH-HHHHHHHHHHHHHHheeeccccc
Confidence            457899999999999999999999998743 22111   00000000000011111 11111111111111111111111


Q ss_pred             HhhcCccchHHHHHHHHHHHHHHHHH---HHhcCCCC-CccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh
Q 027169           82 LKEYPDKINLVFFSCFFGTIQCAVVS---IIVERNPS-AWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVAL  157 (227)
Q Consensus        82 ~~~~~~p~~~~~~~~l~g~i~~~~~~---~~~~~~~~-~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~  157 (227)
                        +. .++.+.....+.|++-....-   ...+.... ..+......|..++.+.. +...-....++|++..++..++.
T Consensus       183 --~t-nilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~P  258 (335)
T KOG2922|consen  183 --QT-NILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSP  258 (335)
T ss_pred             --cc-ceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcch
Confidence              11 245555555555533221110   00111111 111111134555555555 34455666789999999988876


Q ss_pred             hhch-HHHHHHHHHHHHhCCCCCc------hhhhhHHHHHHHhhhhhccccccccc
Q 027169          158 FKPL-GTAIAVFMAVMFLGETPHL------GSLIGTVVIAFGFYAVIWAQGKESNM  206 (227)
Q Consensus       158 ~~~~-~pv~a~l~~~~~lgE~~~~------~~~iG~~li~~Gv~l~~~~~~~~~~~  206 (227)
                      ..|. -..++++-|.++++|--..      ....|...++.|+++..+.|.++.+.
T Consensus       259 iyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~  314 (335)
T KOG2922|consen  259 IYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISL  314 (335)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccccc
Confidence            6654 4677788888999985333      35678899999999987766655443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.34  E-value=0.0014  Score=53.62  Aligned_cols=132  Identities=8%  Similarity=0.029  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHH
Q 027169           60 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR  139 (227)
Q Consensus        60 G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~  139 (227)
                      ..+.+++-++.|+..-....+...+   |.+- ...+.+|++.+.+..++...+..     ....+..-+.-|.+ =.++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG~---p~qQ-~lGtT~GALifaiiv~~~~~p~~-----T~~~~iv~~isG~~-Ws~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGGK---PYQQ-TLGTTLGALIFAIIVFLFVSPEL-----TLTIFIVGFISGAF-WSFG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCCC---hhHh-hhhccHHHHHHHHHHheeecCcc-----chhhHHHHHHhhhH-hhhh
Confidence            4678899999999888877665332   2332 23466677777666654422111     11123332333443 2468


Q ss_pred             HHHHHHHHhccCchhhhhhhc-hHHHHHHHHHHHHhCCCCCchhh----hhHHHHHHHhhhhhcccc
Q 027169          140 SSIIAWCLQKKGPVFVALFKP-LGTAIAVFMAVMFLGETPHLGSL----IGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       140 ~~l~~~~~~~~~~~~~s~~~~-~~pv~a~l~~~~~lgE~~~~~~~----iG~~li~~Gv~l~~~~~~  201 (227)
                      +..-+++++..+.+++.+++. ++-+-+.+++++.|||-.+..++    +..++++.|+++..++++
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            888999999999999988765 67788899999999999888765    345667789998877665

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=96.16  E-value=0.003  Score=50.05  Aligned_cols=66  Identities=12%  Similarity=0.154  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          138 IRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       138 ~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      .+.++|..++++.+|+.++.+....--|..+++++.+|+++....++..++.+.|++...+.++..
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~  130 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH  130 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence            567889999999999999999999999999999999999999999999999999999988766543

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.07  E-value=0.0065  Score=52.58  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          136 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       136 s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      =..+.+.++.++.+++.+...++..+.-+|+..++.++.+|++++.+.++..+-++|++++...+.++
T Consensus       169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            35688999999999999999999999999999999999999999999999999999999998776554

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.61  E-value=0.0018  Score=53.00  Aligned_cols=177  Identities=14%  Similarity=0.152  Sum_probs=107.0

Q ss_pred             ccccccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027169            4 VAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAVLK   83 (227)
Q Consensus         4 ~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~~~   83 (227)
                      +.++|=.+..+   .++++..+++++..  ......+|++|.+    ..+.++...|....+.+.+.|-.|.++.+...-
T Consensus       106 ~~f~EW~t~~~---~IlG~iAliliviG--~~lTs~~~~~nk~----~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v  176 (288)
T COG4975         106 FVFHEWTTPTQ---IILGFIALILIVIG--IYLTSKQDRNNKE----EENPSNLKKGIVILLISTLGYVGYVVLFQLFDV  176 (288)
T ss_pred             EEEeccCcchh---HHHHHHHHHHHHHh--heEeeeecccccc----ccChHhhhhheeeeeeeccceeeeEeeeccccc
Confidence            45666655554   34555555555321  1111111221111    123345778999999999999999999887643


Q ss_pred             hcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhchHH
Q 027169           84 EYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGT  163 (227)
Q Consensus        84 ~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~~~p  163 (227)
                      +.-+.+.-....|.++++++....    .     .....++.+.-+.-|+. =..+...+..+.++.+.+..=.++.+..
T Consensus       177 ~g~saiLPqAiGMv~~ali~~~~~----~-----~~~~~K~t~~nii~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgV  246 (288)
T COG4975         177 DGLSAILPQAIGMVIGALILGFFK----M-----EKRFNKYTWLNIIPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGV  246 (288)
T ss_pred             cchhhhhHHHHHHHHHHHHHhhcc----c-----ccchHHHHHHHHhhHHH-HHhhHHHHHHhhhhhceeeeeeHhhhee
Confidence            321123334444555554443221    1     01112223333333442 3467778888888888888878888889


Q ss_pred             HHHHHHHHHHhCCCCCchh----hhhHHHHHHHhhhhhcc
Q 027169          164 AIAVFMAVMFLGETPHLGS----LIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       164 v~a~l~~~~~lgE~~~~~~----~iG~~li~~Gv~l~~~~  199 (227)
                      +.+.+-|.+++||+=|..+    ++|++++++|..+....
T Consensus       247 iisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~  286 (288)
T COG4975         247 IISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIA  286 (288)
T ss_pred             eeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhee
Confidence            9999999999999988864    57888888887775443

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.42  E-value=1.1  Score=38.81  Aligned_cols=141  Identities=11%  Similarity=0.069  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHHHHHHHHHHHhcCC-----CCCccccCchhHHHHHH
Q 027169           59 LGGLLLTVTCFSSATWKIFQAAVLKEYPD---KINLVFFSCFFGTIQCAVVSIIVERN-----PSAWKLQPGIQRTAVIY  130 (227)
Q Consensus        59 ~G~l~~l~aa~~~a~~~vl~k~~~~~~~~---p~~~~~~~~l~g~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~li~  130 (227)
                      .=.+.++...+-++......|...++...   |.+.++..=+.-.+++....+...+.     ...........+.-..-
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            44566666677777777777766444311   34455554455555555555444211     11110000011111222


Q ss_pred             HHHH--HHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcc
Q 027169          131 AAIV--GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  199 (227)
Q Consensus       131 l~v~--~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~  199 (227)
                      +++.  ...+-..+++.+.++.+|+.-.....+-.+.+.++..+++++++++.||...++...|+.++...
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~  165 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP  165 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            2221  12334458889999999999999999999999999999999999999999999999999998733

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=95.33  E-value=0.16  Score=43.80  Aligned_cols=143  Identities=13%  Similarity=0.103  Sum_probs=88.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHH-HhcCCCCC-ccccCchhHHHHHHHHH
Q 027169           56 NWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSI-IVERNPSA-WKLQPGIQRTAVIYAAI  133 (227)
Q Consensus        56 ~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~li~l~v  133 (227)
                      +...|+++..+++++-+.+.+=.||. |+.+- -.+=..+.+++-++.-.+.. +.-++..+ ....+...+......|+
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsW-Es~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWSW-ESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCccH-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            46889999999999999999999987 55541 22222333443333322222 22222111 12223334444444555


Q ss_pred             HHHHHHHHHHHHHHhccCchhh-hhhhchHHHHHHHHHHHHhCC-------CCCchhhhhHHHHHHHhhhhhcccc
Q 027169          134 VGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGE-------TPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       134 ~~s~~~~~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~~lgE-------~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      + =.++-..|-.++|+.+.+.. ++..-+.-+++.++--++.|+       +-....++|.++.++|+.++.+.-.
T Consensus        82 l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~  156 (344)
T PF06379_consen   82 L-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS  156 (344)
T ss_pred             H-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence            3 35677788889999887743 666666677777776555443       2234678999999999999876543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.10  E-value=0.011  Score=50.22  Aligned_cols=127  Identities=16%  Similarity=0.122  Sum_probs=90.8

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHH
Q 027169           53 EYSNWALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAA  132 (227)
Q Consensus        53 ~~~~~~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~  132 (227)
                      .+.++..|..+++.+.+..+...++.|+..++...    ...                +.............|+    .|
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~~----------------ra~~gg~~yl~~~~Ww----~G   70 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SGL----------------RAGEGGYGYLKEPLWW----AG   70 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hcc----------------cccCCCcchhhhHHHH----HH
Confidence            34567889999999999999999999988777431    000                0011111111111233    35


Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          133 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       133 v~~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      ++...++-..-+-+....+++-+++++.+..++..+++..+++|++++...+|+++.++|=.+.....+++
T Consensus        71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e  141 (335)
T KOG2922|consen   71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE  141 (335)
T ss_pred             HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence            55555555555566666899999999999999999999999999999999999999999888776554444

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=94.20  E-value=0.15  Score=42.46  Aligned_cols=132  Identities=10%  Similarity=0.047  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHHHH
Q 027169           60 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTVIR  139 (227)
Q Consensus        60 G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~~~  139 (227)
                      |.+..++|+++++.+.+=.|+.. ..+ ++.+..+++.-..+..+++.. ..+. +.  +.+. .+..   -.+  =..+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~-~gD-g~~fQw~~~~~i~~~g~~v~~-~~~~-p~--f~p~-amlg---G~l--W~~g   68 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD-TGD-GFFFQWVMCSGIFLVGLVVNL-ILGF-PP--FYPW-AMLG---GAL--WATG   68 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc-CCC-cHHHHHHHHHHHHHHHHHHHH-hcCC-Cc--ceeH-HHhh---hhh--hhcC
Confidence            56778899999999999888764 333 455555544443333333333 2221 11  1111 1111   111  1112


Q ss_pred             HHHHHHHHhccCchhh-hhhhchHHHHHHHHHHH-HhCCCCC-----chhhhhHHHHHHHhhhhhcccccc
Q 027169          140 SSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVM-FLGETPH-----LGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       140 ~~l~~~~~~~~~~~~~-s~~~~~~pv~a~l~~~~-~lgE~~~-----~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      ..+-.-.+|..|-... .+.+...-+.+-..|-+ +||++.+     +.-++|.+++++|..+....|.++
T Consensus        69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            2233334455444433 22333344445444433 5555433     357799999999988877655544

The region concerned is approximately 280 residues long.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=94.12  E-value=0.13  Score=43.22  Aligned_cols=66  Identities=15%  Similarity=0.168  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          135 GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       135 ~s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      +-..+..+++.++..+.++.--++.-...+|.-+++..+++.+++..+|+|+..+.+|++.+...+
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d  160 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLD  160 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeee
Confidence            455677788888888999999999999999999999999999999999999999999999987654

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=1.6  Score=37.28  Aligned_cols=131  Identities=16%  Similarity=0.219  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccchHHH--HHHHHHHHHHHHHHHHh--cCCCCCccccCchhHHHHHHHHHHHH
Q 027169           61 GLLLTVTCFSSATWKIFQAAVLKEYPDKINLVF--FSCFFGTIQCAVVSIIV--ERNPSAWKLQPGIQRTAVIYAAIVGT  136 (227)
Q Consensus        61 ~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~--~~~l~g~i~~~~~~~~~--~~~~~~~~~~~~~~~~~li~l~v~~s  136 (227)
                      ...++.=+++-.+..+..|.....++-|..+..  .|++...+........-  +.++.++.....+.-..+++.+-+.+
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t   93 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFT   93 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHH
Confidence            333333444445556667766655554455554  88888777776655321  22222232222112223444444333


Q ss_pred             HHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhh
Q 027169          137 VIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  197 (227)
Q Consensus       137 ~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~  197 (227)
                      .      .++.++.+.....++-..+|+...+....++|.+++...+.....+++|.....
T Consensus        94 ~------~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~  148 (314)
T KOG1444|consen   94 G------SKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA  148 (314)
T ss_pred             c------cccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence            2      356788999999999999999999999999999999999999999988777654

>PRK02237 hypothetical protein; Provisional

Probab=93.79  E-value=0.52  Score=33.66  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=41.7

Q ss_pred             chhh-hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          152 PVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       152 ~~~~-s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      ..|+ +.+.-...+.++++++.+-|++|+.+-++|.++.++|+.++.+.+
T Consensus        58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            3444 677777888899999999999999999999999999998876554

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=93.68  E-value=1.3  Score=36.75  Aligned_cols=102  Identities=10%  Similarity=0.059  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cCchhHHHHHHHHHHHHHH
Q 027169           60 GGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKL-QPGIQRTAVIYAAIVGTVI  138 (227)
Q Consensus        60 G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~-~~~~~~~~li~l~v~~s~~  138 (227)
                      -..+.+.++++.-...-+.|.+....+ |.-.+.++..+++++++.+.   +    +|.. ....+|..++..|+ +...
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~---R----Pwr~r~~~~~~~~~~~yGv-sLg~   83 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALF---R----PWRRRLSKPQRLALLAYGV-SLGG   83 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHh---h----HHHhccChhhhHHHHHHHH-HHHH
Confidence            578889999999999999999888887 68899999999988887754   2    1221 12346888888888 6778


Q ss_pred             HHHHHHHHHhccCchhhhhhhchHHHHHHHHH
Q 027169          139 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMA  170 (227)
Q Consensus       139 ~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~  170 (227)
                      ...+++.++++++-..+-.+.++.|+.-.+++
T Consensus        84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~  115 (292)
T COG5006          84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLS  115 (292)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence            89999999999999999999999998766544

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=92.87  E-value=0.52  Score=33.59  Aligned_cols=51  Identities=16%  Similarity=0.171  Sum_probs=42.0

Q ss_pred             Cchhh-hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          151 GPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       151 ~~~~~-s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      ...|+ +.+.-...+.++++++.+-|++|+..-++|..+.++|+.++.+.++
T Consensus        55 ~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   55 AFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             cchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            33343 6666677788999999999999999999999999999998876553

; GO: 0016020 membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=92.67  E-value=0.37  Score=40.98  Aligned_cols=125  Identities=10%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             HHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccCchhHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q 027169           76 IFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSA--WKLQPGIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPV  153 (227)
Q Consensus        76 vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~  153 (227)
                      .+.+...++++=|+-.+..+..+=..+....-...+...+.  ....+..+.-.+.-.|+ ++.+=-.+-+|++++.+.+
T Consensus        33 f~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlS  111 (349)
T KOG1443|consen   33 FYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLS  111 (349)
T ss_pred             HHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeee
Confidence            33444445555567777776665444433333222222111  12222222333334455 6677788999999999999


Q ss_pred             hhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          154 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       154 ~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      .-++.-...++|..++|.+|-=|+++|.-..=..+|.+|+++..++..
T Consensus       112 lYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT  159 (349)
T KOG1443|consen  112 LYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST  159 (349)
T ss_pred             eeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence            999999999999999999999999999988888888899998876554

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=92.20  E-value=0.14  Score=36.30  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             HHHHHHHhCCCCCchhhhhHHHHHHHhhhhh
Q 027169          167 VFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  197 (227)
Q Consensus       167 ~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~  197 (227)
                      +.++++++||+++|.+..|.++++.+++.+.
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            4567889999999999999999999887654

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.41  E-value=0.39  Score=33.65  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=28.8

Q ss_pred             HHHHHHHhCCCCCchhhhhHHHHHHHhhhhhc
Q 027169          167 VFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       167 ~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      +.+++++++|++.|.++.|..+++.|++++.+
T Consensus        84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            46789999999999999999999999988765

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=88.86  E-value=0.19  Score=36.35  Aligned_cols=28  Identities=18%  Similarity=0.290  Sum_probs=26.0

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVS   29 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~   29 (227)
                      +.+++||++++.|++|+.+.++|++.+-
T Consensus        75 g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         75 SWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999985

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.68  E-value=0.65  Score=38.98  Aligned_cols=115  Identities=17%  Similarity=0.291  Sum_probs=79.3

Q ss_pred             cCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccC----chhHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhc
Q 027169           85 YPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQP----GIQRTAVIYAAIVGTVIRSSIIAWCLQKKGPVFVALFKP  160 (227)
Q Consensus        85 ~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~----~~~~~~li~l~v~~s~~~~~l~~~~~~~~~~~~~s~~~~  160 (227)
                      .+.|.-++.+++++...++..+.......+....++.    ...-.-+.-+.+ .-+.+...-+.++++.+.+.--.-..
T Consensus        58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsv-Vfi~mI~fnnlcL~yVgVaFYyvgRs  136 (347)
T KOG1442|consen   58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSV-VFILMISFNNLCLKYVGVAFYYVGRS  136 (347)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhh-eeeeehhccceehhhcceEEEEeccc
Confidence            3447889999999988888777754433221111111    011111222222 12344556678889999888888889


Q ss_pred             hHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          161 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       161 ~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      ++.+|++++++++++++=+.....+|.+|+.|..+-.+.+
T Consensus       137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE  176 (347)
T KOG1442|consen  137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE  176 (347)
T ss_pred             hhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence            9999999999999999999999999999999988765444

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=88.38  E-value=0.2  Score=36.78  Aligned_cols=28  Identities=21%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVS   29 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~   29 (227)
                      +.+++||++++.|++|+.+.++|++.+-
T Consensus        75 g~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         75 SVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            4578999999999999999999999884

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=86.88  E-value=0.071  Score=44.14  Aligned_cols=134  Identities=13%  Similarity=0.129  Sum_probs=92.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhHHHHHHHHHHHHH
Q 027169           58 ALGGLLLTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPSAWKLQPGIQRTAVIYAAIVGTV  137 (227)
Q Consensus        58 ~~G~l~~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~li~l~v~~s~  137 (227)
                      .+|.++.+.++-.-....-+.|+.   ...|..-++....+=+++..++..+....   .    ..-|-.-+.+++ .-+
T Consensus        21 ~LGQiLSL~~t~~a~tss~la~k~---iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~---~----~~~~~hYilla~-~DV   89 (336)
T KOG2766|consen   21 GLGQILSLLITSTAFTSSELARKG---INAPTSQTFLNYVLLALVYGPIMLFRRKY---I----KAKWRHYILLAF-VDV   89 (336)
T ss_pred             eHHHHHHHHHHcchhhhHHHHhcc---CCCccHHHHHHHHHHHHHHhhHHHhhhHH---H----HHHHHHhhheeE-Eee
Confidence            345555555444444444444443   23356666666665555665555433211   1    123444555566 355


Q ss_pred             HHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccccc
Q 027169          138 IRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  202 (227)
Q Consensus       138 ~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~  202 (227)
                      =+.++...|.++++-+.+.++-.-..+..++++|+|++.+-.++++.|.++.++|+.++...+-+
T Consensus        90 EaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~  154 (336)
T KOG2766|consen   90 EANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH  154 (336)
T ss_pred             cccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence            67778889999999999999999999999999999999999999999999999999988766543

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=85.81  E-value=0.51  Score=40.06  Aligned_cols=131  Identities=8%  Similarity=0.036  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhcCCCC-----------CccccCchhHHHHHHHH
Q 027169           64 LTVTCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTIQCAVVSIIVERNPS-----------AWKLQPGIQRTAVIYAA  132 (227)
Q Consensus        64 ~l~aa~~~a~~~vl~k~~~~~~~~p~~~~~~~~l~g~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~li~l~  132 (227)
                      |+++.+||+.+-...|...++... .+.+.|=+.++.+...++..++-+...           +....+...+...+.-|
T Consensus         1 M~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG   79 (336)
T PF07168_consen    1 MVITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG   79 (336)
T ss_pred             CeeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence            356789999999999887665432 234566666666655555544422211           11111111222223334


Q ss_pred             HHHHHHHHHHHHHHHhccCchhhhhhh-chHHHHHHHHHHHHhCCCCC--chhhhhHHHHHHHhhhhh
Q 027169          133 IVGTVIRSSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPH--LGSLIGTVVIAFGFYAVI  197 (227)
Q Consensus       133 v~~s~~~~~l~~~~~~~~~~~~~s~~~-~~~pv~a~l~~~~~lgE~~~--~~~~iG~~li~~Gv~l~~  197 (227)
                      ++ --++..+..+++...|-+.+-.+. .+.-+.++++-|+ ++.+.+  ...+.|.+++++++++-.
T Consensus        80 vv-fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga  145 (336)
T PF07168_consen   80 VV-FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA  145 (336)
T ss_pred             Hh-hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence            42 236667777776665544432222 2233345555553 556655  356678888887777643

Transport is dependent on glucose and a proton gradient [].

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=83.99  E-value=36  Score=31.50  Aligned_cols=41  Identities=7%  Similarity=-0.088  Sum_probs=20.2

Q ss_pred             hhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhh
Q 027169          156 ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV  196 (227)
Q Consensus       156 s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~  196 (227)
                      .......|+-+.+.|.+.-.-.+.....+++++++++..+.
T Consensus       350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            34445567777777765433333333344444444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=83.81  E-value=2.9  Score=34.43  Aligned_cols=68  Identities=15%  Similarity=0.105  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhccCchhhhhhhchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccccc
Q 027169          136 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  203 (227)
Q Consensus       136 s~~~~~l~~~~~~~~~~~~~s~~~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~~~  203 (227)
                      ..++..--+.++|..+=...-+--..-|+=.+++|+++.+.+.+|....-..+|++|+.+.-+.++|.
T Consensus        95 YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv  162 (337)
T KOG1580|consen   95 YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV  162 (337)
T ss_pred             HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence            34566667888888876666677788899999999999999999999999999999999988876554

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=82.93  E-value=31  Score=30.02  Aligned_cols=180  Identities=16%  Similarity=0.093  Sum_probs=100.5

Q ss_pred             ccCcchhhhhHHhhhhhhhHHHHhcCCCCcCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH------
Q 027169            8 SRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAAV------   81 (227)
Q Consensus         8 e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~aa~~~a~~~vl~k~~------   81 (227)
                      ++-...-.+|+++.++|+.++..- |.    .++++.+++    ..+.+...|.+.++++.+.-|.+++-....      
T Consensus       131 ~~~g~~vL~Gv~v~LiGIai~g~A-G~----~Ke~~~~~~----~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~  201 (344)
T PF06379_consen  131 TPSGQIVLLGVAVCLIGIAICGKA-GS----MKEKELGEE----AKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEA  201 (344)
T ss_pred             CCCchhhhhHHHHHHHHHHHHhHH-HH----hhhhhhccc----hhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            344556789999999999998521 11    111211111    234567889999999988888777654321      


Q ss_pred             -HhhcCccchH----HHHHHHHHHHHHHHHHHHhc---CCCC---CccccC---chhHHHHHHHHHHHHHHHHHHHHHHH
Q 027169           82 -LKEYPDKINL----VFFSCFFGTIQCAVVSIIVE---RNPS---AWKLQP---GIQRTAVIYAAIVGTVIRSSIIAWCL  147 (227)
Q Consensus        82 -~~~~~~p~~~----~~~~~l~g~i~~~~~~~~~~---~~~~---~~~~~~---~~~~~~li~l~v~~s~~~~~l~~~~~  147 (227)
                       .+.-.+|+..    ....+.-|.+.-+..+++..   ++..   +.....   ......-...|+ -=...+.+|-++-
T Consensus       202 a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~  280 (344)
T PF06379_consen  202 AVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGE  280 (344)
T ss_pred             HHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence             1111111111    12222334555556665431   2221   111111   122222233333 2345677788887


Q ss_pred             hccCch----hhhhhhchHHHHHHHHHHHHhCCC------CCchhhhhHHHHHHHhhhhhc
Q 027169          148 QKKGPV----FVALFKPLGTAIAVFMAVMFLGET------PHLGSLIGTVVIAFGFYAVIW  198 (227)
Q Consensus       148 ~~~~~~----~~s~~~~~~pv~a~l~~~~~lgE~------~~~~~~iG~~li~~Gv~l~~~  198 (227)
                      .+.++.    .-.+.+.+..+++-++|.+ +||-      .-...++|+++++.++.++-+
T Consensus       281 s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~  340 (344)
T PF06379_consen  281 SKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY  340 (344)
T ss_pred             HHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            777743    4467788888999999964 8872      223457888888888887654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.39
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.09
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	92.19
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	89.46

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.39  E-value=6.4e-13  Score=99.02  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhhh-hchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhcccc
Q 027169          130 YAAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  201 (227)
Q Consensus       130 ~l~v~~s~~~~~l~~~~~~~~~~~~~s~~-~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~~  201 (227)
                      .+++++++++|++|.+++++.+++++..+ .++.|+++++++++++||++++.+++|+++|++|+++..+.++
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~  106 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR  106 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            36777899999999999999999999888 8999999999999999999999999999999999999987553

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.09  E-value=2.2e-09  Score=77.01  Aligned_cols=71  Identities=15%  Similarity=0.205  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhhh-hchHHHHHHHHHHHHhCCCCCchhhhhHHHHHHHhhhhhccc
Q 027169          130 YAAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  200 (227)
Q Consensus       130 ~l~v~~s~~~~~l~~~~~~~~~~~~~s~~-~~~~pv~a~l~~~~~lgE~~~~~~~iG~~li~~Gv~l~~~~~  200 (227)
                      .+++++..+++.+|.+++|+.+.+++..+ ..+.|+++.+++++++||++++.+++|+.+|++|+++....+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            35666788999999999999999999887 899999999999999999999999999999999999987654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=92.19  E-value=0.039  Score=38.78  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=25.9

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVS   29 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~   29 (227)
                      +.+++||++++.|++|+.+.++|++++.
T Consensus        75 ~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           75 SWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999985

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=89.46  E-value=0.075  Score=38.92  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             ccccccccCcchhhhhHHhhhhhhhHHHH
Q 027169            2 EKVAIRSRSSQAKILGTVVSIAGAFIVSL   30 (227)
Q Consensus         2 ~~~~l~e~~~~~~~~g~~l~~~Gv~li~~   30 (227)
                      +.+++||++++.+++|+++.++|++++..
T Consensus        75 g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           75 SWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            45789999999999999999999999864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00