Citrus Sinensis ID: 027171
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 227 | ||||||
| 224075359 | 304 | predicted protein [Populus trichocarpa] | 0.841 | 0.628 | 0.75 | 2e-81 | |
| 118488282 | 325 | unknown [Populus trichocarpa] | 0.841 | 0.587 | 0.75 | 3e-81 | |
| 255574454 | 304 | molybdopterin cofactor sulfurase, putati | 0.841 | 0.628 | 0.734 | 6e-79 | |
| 225423585 | 311 | PREDICTED: MOSC domain-containing protei | 0.837 | 0.610 | 0.732 | 8e-78 | |
| 15221559 | 318 | molybdenum cofactor sulfurase-like prote | 0.837 | 0.597 | 0.706 | 5e-76 | |
| 297846066 | 318 | molybdenum cofactor sulfurase family pro | 0.837 | 0.597 | 0.691 | 2e-74 | |
| 449433473 | 301 | PREDICTED: MOSC domain-containing protei | 0.823 | 0.621 | 0.696 | 1e-73 | |
| 255574460 | 304 | molybdopterin cofactor sulfurase, putati | 0.841 | 0.628 | 0.682 | 2e-73 | |
| 226493836 | 321 | mo-molybdopterin cofactor sulfurase [Zea | 0.837 | 0.591 | 0.685 | 4e-73 | |
| 238009102 | 321 | unknown [Zea mays] | 0.837 | 0.591 | 0.680 | 1e-72 |
| >gi|224075359|ref|XP_002304601.1| predicted protein [Populus trichocarpa] gi|222842033|gb|EEE79580.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/192 (75%), Positives = 165/192 (85%), Gaps = 1/192 (0%)
Query: 1 MEAAAKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLAL 60
MEA AKV SIF+YP+KSCRGIS+ Q APLTPTGFRWDR W+V+N GRAYTQR EPKLAL
Sbjct: 1 MEATAKVSSIFIYPVKSCRGISLSQ-APLTPTGFRWDRNWLVVNYRGRAYTQRVEPKLAL 59
Query: 61 VETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGA 120
VE ELP+EAF EGWEPT SFM I+APGM LKISL KP ++A+GVSVWEW GSAL EGA
Sbjct: 60 VEIELPDEAFSEGWEPTKNSFMKIKAPGMSVLKISLMKPSEVAEGVSVWEWSGSALDEGA 119
Query: 121 EASNWFTNYLGKPSRLVRYNAESETRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKL 180
EA+ WF++YLGKPS+LVR+NA SETR +DP YA G K MFSD +PFML+SQGSLDALN+L
Sbjct: 120 EAAKWFSDYLGKPSQLVRFNAASETRLIDPNYAPGHKTMFSDLFPFMLISQGSLDALNQL 179
Query: 181 LKEPIPINRFRP 192
L+EP+PINRFRP
Sbjct: 180 LREPVPINRFRP 191
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118488282|gb|ABK95960.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255574454|ref|XP_002528139.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] gi|223532437|gb|EEF34230.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|225423585|ref|XP_002273557.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial [Vitis vinifera] gi|297738033|emb|CBI27234.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|15221559|ref|NP_174376.1| molybdenum cofactor sulfurase-like protein [Arabidopsis thaliana] gi|9755390|gb|AAF98197.1|AC000107_20 F17F8.22 [Arabidopsis thaliana] gi|26452771|dbj|BAC43466.1| unknown protein [Arabidopsis thaliana] gi|29824153|gb|AAP04037.1| unknown protein [Arabidopsis thaliana] gi|332193171|gb|AEE31292.1| molybdenum cofactor sulfurase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297846066|ref|XP_002890914.1| molybdenum cofactor sulfurase family protein [Arabidopsis lyrata subsp. lyrata] gi|297336756|gb|EFH67173.1| molybdenum cofactor sulfurase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|449433473|ref|XP_004134522.1| PREDICTED: MOSC domain-containing protein 2, mitochondrial-like [Cucumis sativus] gi|449527406|ref|XP_004170702.1| PREDICTED: MOSC domain-containing protein 2, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255574460|ref|XP_002528142.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] gi|223532440|gb|EEF34233.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|226493836|ref|NP_001148545.1| mo-molybdopterin cofactor sulfurase [Zea mays] gi|195620298|gb|ACG31979.1| mo-molybdopterin cofactor sulfurase [Zea mays] gi|414590195|tpg|DAA40766.1| TPA: mo-molybdopterin cofactor sulfurase [Zea mays] | Back alignment and taxonomy information |
|---|
| >gi|238009102|gb|ACR35586.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 227 | ||||||
| TAIR|locus:2015746 | 318 | AT1G30910 [Arabidopsis thalian | 0.837 | 0.597 | 0.706 | 2e-72 | |
| TAIR|locus:2156369 | 308 | AT5G44720 [Arabidopsis thalian | 0.841 | 0.620 | 0.640 | 1.5e-65 | |
| MGI|MGI:1914497 | 338 | Marc2 "mitochondrial amidoxime | 0.779 | 0.523 | 0.307 | 5.7e-20 | |
| RGD|621257 | 338 | Marc2 "mitochondrial amidoxime | 0.784 | 0.526 | 0.313 | 2.5e-19 | |
| UNIPROTKB|O88994 | 338 | Marc2 "MOSC domain-containing | 0.784 | 0.526 | 0.313 | 2.5e-19 | |
| UNIPROTKB|F1NXH1 | 348 | MARC2 "Uncharacterized protein | 0.788 | 0.514 | 0.283 | 7.8e-19 | |
| UNIPROTKB|G3X6L2 | 335 | MOSC2 "Uncharacterized protein | 0.784 | 0.531 | 0.311 | 2.2e-18 | |
| UNIPROTKB|Q1LZH1 | 336 | MARC2 "MOSC domain-containing | 0.784 | 0.529 | 0.311 | 2.3e-18 | |
| UNIPROTKB|G5E6I5 | 343 | MOSC1 "Uncharacterized protein | 0.792 | 0.524 | 0.305 | 1.4e-17 | |
| UNIPROTKB|Q5VT66 | 337 | MARC1 "MOSC domain-containing | 0.779 | 0.525 | 0.310 | 8.4e-17 |
| TAIR|locus:2015746 AT1G30910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 135/191 (70%), Positives = 156/191 (81%)
Query: 2 EAAAKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALV 61
E AA+V S+FVYPIKSCRGIS+ QA LTPTGFRWDR W+++N+ GR TQR EPKL+L+
Sbjct: 16 EVAARVSSLFVYPIKSCRGISL-SQAALTPTGFRWDRNWLIVNSKGRGLTQRVEPKLSLI 74
Query: 62 ETELPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAE 121
E E+P AF E WEP S MV+RAPGM ALK+SL+KP IADGVSVWEW GSAL EG E
Sbjct: 75 EVEMPKHAFGEDWEPEKSSNMVVRAPGMDALKVSLAKPDKIADGVSVWEWSGSALDEGEE 134
Query: 122 ASNWFTNYLGKPSRLVRYNAESETRPVDPKYAAGEKIMFSDCYPFMLLSQGSLDALNKLL 181
AS WFTN++GKP RLVR+N+ ETRPVDP YA G MFSD YPF+L+SQGSLD+LNKLL
Sbjct: 135 ASQWFTNFVGKPCRLVRFNSAYETRPVDPNYAPGHIAMFSDMYPFLLISQGSLDSLNKLL 194
Query: 182 KEPIPINRFRP 192
KEP+PINRFRP
Sbjct: 195 KEPVPINRFRP 205
|
|
| TAIR|locus:2156369 AT5G44720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1914497 Marc2 "mitochondrial amidoxime reducing component 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|621257 Marc2 "mitochondrial amidoxime reducing component 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O88994 Marc2 "MOSC domain-containing protein 2, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NXH1 MARC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3X6L2 MOSC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q1LZH1 MARC2 "MOSC domain-containing protein 2, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G5E6I5 MOSC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5VT66 MARC1 "MOSC domain-containing protein 1, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| grail3.0047000902 | SubName- Full=Putative uncharacterized protein; (305 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 227 | |||
| pfam03476 | 118 | pfam03476, MOSC_N, MOSC N-terminal beta barrel dom | 5e-45 | |
| COG3217 | 270 | COG3217, COG3217, Uncharacterized Fe-S protein [Ge | 5e-26 | |
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 1e-22 |
| >gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 5e-45
Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 12/129 (9%)
Query: 5 AKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETE 64
A+V S+FVYPIKSCRG S+ +A LTP G RWDR+WMV++++G+ T R P+L L+ T
Sbjct: 2 ARVSSLFVYPIKSCRGESL-SRAELTPAGLRWDRRWMVVDSDGKFITARRHPRLVLIRTT 60
Query: 65 LPNEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRDIADGVSVWEWCGSALAEGAEASN 124
L + + APGM L + L+ + GV VW S G A++
Sbjct: 61 LDE-----------DGGLTLTAPGMPPLSVPLAANKFQLVGVLVWGLSFSGRDCGDAAAD 109
Query: 125 WFTNYLGKP 133
WF+++LG+P
Sbjct: 110 WFSDFLGEP 118
|
This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold. Length = 118 |
| >gnl|CDD|225758 COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 227 | |||
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG3217 | 270 | Uncharacterized Fe-S protein [General function pre | 100.0 | |
| KOG2362 | 336 | consensus Uncharacterized Fe-S protein [General fu | 100.0 | |
| PF03476 | 120 | MOSC_N: MOSC N-terminal beta barrel domain; InterP | 100.0 | |
| PF03473 | 133 | MOSC: MOSC domain; InterPro: IPR005302 Molybdenum | 99.12 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 98.98 |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-47 Score=372.80 Aligned_cols=205 Identities=30% Similarity=0.509 Sum_probs=176.9
Q ss_pred CceEEeeeeeecccccCceeecceeeEeccCcccCceeEEEeCCCceEEecCCcceeeeEEecCCcccccCCCCCCCceE
Q 027171 3 AAAKVKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFM 82 (227)
Q Consensus 3 ~~~~V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l 82 (227)
..++|++|||||||||+|++| ++|++++.||.|||+|||+|++|+++|||++|+|++|+++++.+ ++.|
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v-~~a~~~~~Gl~~DR~~~lvd~~g~~~t~r~~p~l~~i~~~~~~~----------~~~l 584 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSV-ERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFIDLE----------SGKL 584 (805)
T ss_pred CCCEEEEEEEeccccCCCcee-eEEEEecccccccceEEEEcCCCcEEEcccCceEEEEEeEEecC----------CCeE
Confidence 356899999999999999999 99999999999999999999999999999999999999999642 5689
Q ss_pred EEEcCCCc-eEEEecCCCCC--CccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCCCCCCC-----cCCC-
Q 027171 83 VIRAPGMQ-ALKISLSKPRD--IADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVD-----PKYA- 153 (227)
Q Consensus 83 ~l~~p~~~-~l~v~l~~~~~--~~~~~~vw~~~~~~~d~g~~~~~w~S~~Lg~p~rLv~~~~~~~~r~~~-----~~~~- 153 (227)
++++|+++ ++.|++++... ...++++|++.+.+++||+++++|||++||++|+|+++.+... |..+ +.+.
T Consensus 585 ~l~~~~~~~~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~-r~~~~~~~~~~~~~ 663 (805)
T PLN02724 585 VVRAPRCDHKLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLVRKSSSNT-RVCRNRNPSHSPCG 663 (805)
T ss_pred EEEcCCCCccEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCceEEEEeCCccc-cccccccccccccc
Confidence 99999987 69999986532 3467899999999999999999999999999999999976543 4332 1111
Q ss_pred -CCCeeeccCCCceeeeeHHHHHHHHHHhCC-------CCCCCcccccEEEeccCcccceeceeeEEEEeeeeEE
Q 027171 154 -AGEKIMFSDCYPFMLLSQGSLDALNKLLKE-------PIPINRFRPKYKSESYNICLLSKSILCLYVYSICFSL 220 (227)
Q Consensus 154 -~~~~~~f~D~~pillis~aSl~~L~~~l~~-------~v~~~RFRpNIvI~g~~~~~~e~~~~~~~i~~~~~~~ 220 (227)
...+++|+|++|+||+|++||++||+++++ +++++||||||||+|.+ +|+||-|+-..||+.-|.+
T Consensus 664 ~~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~-~f~ED~W~~l~IG~~~~~~ 737 (805)
T PLN02724 664 DDESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGE-AYAEDEWQSLSIGDAEFTV 737 (805)
T ss_pred CcCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCC-CccccCceEEEECCEEEEE
Confidence 234689999999999999999999999973 69999999999999987 5888887777777766654
|
|
| >COG3217 Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2362 consensus Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO) | Back alignment and domain information |
|---|
| >PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form | Back alignment and domain information |
|---|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 227 | ||||
| 2exn_A | 136 | Solution Structure For The Protein Coded By Gene Lo | 2e-04 |
| >pdb|2EXN|A Chain A, Solution Structure For The Protein Coded By Gene Locus Bb0938 Of Bordetella Bronchiseptica. Northeast Structural Genomics Target Bor11 Length = 136 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 227 | |||
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 1e-44 |
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 1e-44
Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 7 VKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELP 66
+ + PI C + + ++W+V N+ G+ + P+LA V EL
Sbjct: 1 MSTTAYQPIAECGATTQ-------SEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELR 53
Query: 67 NEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRD---IADGVSVWEWCGSALAEGAEAS 123
+V++APGM L I L D + + V E + EG A+
Sbjct: 54 MGY------------LVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAA 101
Query: 124 NWFTNYLGKPSRLVRYNAESETRPVDPKY 152
W +N+ G P R+++ + + P
Sbjct: 102 AWISNHAGVPCRILKVHPDM-AEVRWPSL 129
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 227 | |||
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 100.0 | |
| 1oru_A | 195 | YUAD protein; structural genomics, cytosolic hypot | 98.61 | |
| 1o65_A | 246 | Hypothetical protein YIIM; structural genomics, un | 89.12 |
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=236.10 Aligned_cols=126 Identities=26% Similarity=0.468 Sum_probs=113.0
Q ss_pred EeeeeeecccccCceeecceeeEeccCcccCceeEEEeCCCceEEecCCcceeeeEEecCCcccccCCCCCCCceEEEEc
Q 027171 7 VKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRA 86 (227)
Q Consensus 7 V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l~~ 86 (227)
|++||+||||||+|++| +++. .+||+|||+|++|+|+|||++|+|++|++.++. +.|+|++
T Consensus 1 v~~L~iYPIKSc~g~~l-~~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~~~------------~~L~l~~ 61 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQ-SEAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVELRM------------GYLVLKA 61 (136)
T ss_dssp CCCCCEEEETTTEEECC-GGGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEECS------------SEEEEEC
T ss_pred CceEEEeccccCCceec-CccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEecC------------CEEEEEe
Confidence 68999999999999999 9887 999999999999999999999999999999963 5799999
Q ss_pred CCCceEEEecCCCC---CCccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCCCCCCCcCC
Q 027171 87 PGMQALKISLSKPR---DIADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESETRPVDPKY 152 (227)
Q Consensus 87 p~~~~l~v~l~~~~---~~~~~~~vw~~~~~~~d~g~~~~~w~S~~Lg~p~rLv~~~~~~~~r~~~~~~ 152 (227)
||++++.+++++.. .....+++|++.+.+++||+++++|||++||.|+||++++++. .|.+++..
T Consensus 62 pg~~~l~vpl~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p~rLv~~~~~~-~R~~~~~~ 129 (136)
T 2exn_A 62 PGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDM-AEVRWPSL 129 (136)
T ss_dssp SSSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTT-CCCCCCCC
T ss_pred CCCceEEEECCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCCeEEEEcCCCC-ccccCccc
Confidence 99999999997654 2456789999999999999999999999999999999998764 46666544
|
| >1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2 | Back alignment and structure |
|---|
| >1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 227 | ||||
| d2exna1 | 128 | b.165.1.1 (A:1-128) Hypothetical protein BB0938 {B | 3e-36 |
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: MOSC N-terminal domain-like superfamily: MOSC N-terminal domain-like family: MOSC N-terminal domain-like domain: Hypothetical protein BB0938 species: Bordetella bronchiseptica [TaxId: 518]
Score = 122 bits (307), Expect = 3e-36
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 22/143 (15%)
Query: 7 VKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELP 66
+ + PI C + + ++W+V N+ G+ + P+LA V EL
Sbjct: 1 MSTTAYQPIAECGATTQ-------SEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELR 53
Query: 67 NEAFLEGWEPTGRSFMVIRAPGMQALKISLSKPRD---IADGVSVWEWCGSALAEGAEAS 123
+V++APGM L I L D + + V E + EG A+
Sbjct: 54 MGY------------LVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAA 101
Query: 124 NWFTNYLGKPSRLVRYNAESETR 146
W +N+ G P R+++ + +
Sbjct: 102 AWISNHAGVPCRILKVHPDMAEV 124
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 227 | |||
| d2exna1 | 128 | Hypothetical protein BB0938 {Bordetella bronchisep | 100.0 | |
| d1orua_ | 182 | Hypothetical protein YuaD {Bacillus subtilis [TaxI | 97.34 |
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} | Back information, alignment and structure |
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class: All beta proteins fold: MOSC N-terminal domain-like superfamily: MOSC N-terminal domain-like family: MOSC N-terminal domain-like domain: Hypothetical protein BB0938 species: Bordetella bronchiseptica [TaxId: 518]
Probab=100.00 E-value=7.2e-37 Score=236.65 Aligned_cols=119 Identities=27% Similarity=0.491 Sum_probs=107.8
Q ss_pred EeeeeeecccccCceeecceeeEeccCcccCceeEEEeCCCceEEecCCcceeeeEEecCCcccccCCCCCCCceEEEEc
Q 027171 7 VKSIFVYPIKSCRGISVCQQAPLTPTGFRWDRQWMVINNNGRAYTQRNEPKLALVETELPNEAFLEGWEPTGRSFMVIRA 86 (227)
Q Consensus 7 V~~L~iyPIKS~~g~~v~~~~~l~~~Gl~~DR~~~l~d~~g~~lt~r~~p~L~~i~~~~~~~~~~~~~~~~~~~~l~l~~ 86 (227)
|+.|++||||||+|+++ + .||.|||+|||+|++|+|+|||++|+|++|++.++ .+.|+|++
T Consensus 1 ~s~~~~~PIKsc~g~~~-~------~gl~~DR~wmlvd~~G~fltqR~~P~La~i~~~~~------------~~~L~l~~ 61 (128)
T d2exna1 1 MSTTAYQPIAECGATTQ-S------EAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELR------------MGYLVLKA 61 (128)
T ss_dssp CCCCCEEEETTTEEECC-G------GGGGTCCSEEEEETTSCEECTTTCGGGGCCEEEEC------------SSEEEEEC
T ss_pred CcceeeecccccCCccc-c------chhhhceeEEEECCCCCEEEcccCCcEEEEEEEEe------------CCEEEEEe
Confidence 57899999999999999 4 59999999999999999999999999999999996 46899999
Q ss_pred CCCceEEEecCCCCC---CccceEEecccccccccchHHHHHHHhhhCCCeEEEEecCCCC
Q 027171 87 PGMQALKISLSKPRD---IADGVSVWEWCGSALAEGAEASNWFTNYLGKPSRLVRYNAESE 144 (227)
Q Consensus 87 p~~~~l~v~l~~~~~---~~~~~~vw~~~~~~~d~g~~~~~w~S~~Lg~p~rLv~~~~~~~ 144 (227)
||++++.+|+..... ...++.+|++.+.+++||+++++|||++||.||+|+++.|+..
T Consensus 62 pg~~~l~vpL~~~~~~~~~~~~v~vw~~~~~a~~~g~~~~~WfS~~LG~~~rLv~~~p~~~ 122 (128)
T d2exna1 62 PGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMA 122 (128)
T ss_dssp SSSCEEEEESSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSSEEEEEECTTTC
T ss_pred cCCCceeeccccccccccceEEEEEcCCeeEEEECChHHHHHHHHHhCCceEEEEECCCCC
Confidence 999999999965432 3467899999999999999999999999999999999987653
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| >d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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