Citrus Sinensis ID: 027189

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVDLQISWLII
cccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHccccccccccccccEEEEcccEEEcccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccEEEEEEc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccEEEEccccEEEEEcccccHHHHHHHHHHHcHcccccEEEcccccccEEEccEEEccccEccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccccccHEEEEEEEHcccccccccEccccccccEEEEEc
mkgkakrsstklglptaLLLCSFFFLAgfygstflsrdvpsirpklrTLEVVEKenesglphgetgdasiqsipfqvlswrpralyfpnfasaEQCQSIIATAKKrlkpsqlalrqgetvestkgtrtssgtfisasedkTGILELIEHKIARatmlpqthgeAFNVLRYEIgqkydshydafnpaeygpqmSQRLASFLLYLSDveeggetmfpfeVDLQISWLII
mkgkakrsstklglpTALLLCSFFFLAGFYGSTflsrdvpsirpKLRTLEVVEKENesglphgetgdasiqSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKrlkpsqlalrqgetvestkgtrtssgtfisasedktGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVDLQISWLII
MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVDLQISWLII
***********LGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTL********************IQSIPFQVLSWRPRALYFPNFASAEQCQSIIATA*************************************TGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVDLQISWLI*
***********LGLPTALLLCSFFFLAGFYGSTFL***********************GLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKR******************GTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVDLQISWLII
***********LGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKR***********************SGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVDLQISWLII
*********TKLGLPTALLLCSFFFLAGFYGSTFLSRD*****PKLRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVDLQISWLII
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEVDLQISWLII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query227 2.2.26 [Sep-21-2011]
Q75UG4544 Prolyl 4-hydroxylase subu yes no 0.625 0.261 0.296 2e-07
Q6W3F0542 Prolyl 4-hydroxylase subu yes no 0.599 0.250 0.315 3e-07
P16924516 Prolyl 4-hydroxylase subu yes no 0.559 0.246 0.298 3e-07
P54001534 Prolyl 4-hydroxylase subu yes no 0.559 0.237 0.298 3e-07
Q60715534 Prolyl 4-hydroxylase subu no no 0.563 0.239 0.279 7e-07
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.568 0.241 0.282 1e-06
Q5RAG8534 Prolyl 4-hydroxylase subu no no 0.563 0.239 0.272 3e-06
P13674534 Prolyl 4-hydroxylase subu no no 0.563 0.239 0.272 3e-06
Q7Z4N8544 Prolyl 4-hydroxylase subu no no 0.625 0.261 0.302 3e-06
O15460535 Prolyl 4-hydroxylase subu yes no 0.572 0.242 0.273 5e-06
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2 SV=1 Back     alignment and function desciption
 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 10/152 (6%)

Query: 70  IQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTS 129
           +Q +  +V+   P  + + +F S  + Q+I   A+  L+ S +A   GE     +  R S
Sbjct: 334 LQPVRKEVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVA--SGEKQLPVE-YRIS 390

Query: 130 SGTFISASEDKTGILELIEHKIARATMLP--QTHGEAFNVLRYEIGQKYDSHYD-AFNPA 186
              ++  + D   +L  ++H+IA  T L     + E   V+ Y IG  Y+ H+D A +P+
Sbjct: 391 KSAWLKDTVDP--VLVTLDHRIAALTGLDVQPPYAEYLQVVNYGIGGHYEPHFDHATSPS 448

Query: 187 E--YGPQMSQRLASFLLYLSDVEEGGETMFPF 216
              Y      R+A+F++YLS VE GG T F +
Sbjct: 449 SPLYRMNSGNRVATFMIYLSSVEAGGATAFIY 480
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2 SV=1 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
255573113286 prolyl 4-hydroxylase alpha subunit, puta 0.929 0.737 0.729 2e-90
297798522288 oxidoreductase [Arabidopsis lyrata subsp 0.911 0.718 0.727 8e-88
385137888288 oxygenase protein, partial [Arabidopsis 0.911 0.718 0.736 6e-87
18418321288 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.911 0.718 0.727 8e-87
224103711294 predicted protein [Populus trichocarpa] 0.951 0.734 0.693 3e-86
225428938284 PREDICTED: prolyl 4-hydroxylase subunit 0.969 0.774 0.717 1e-85
449448264294 PREDICTED: prolyl 4-hydroxylase subunit 0.977 0.755 0.679 4e-82
147823227276 hypothetical protein VITISV_009065 [Viti 0.933 0.768 0.708 2e-81
449511009294 PREDICTED: LOW QUALITY PROTEIN: prolyl 4 0.977 0.755 0.675 2e-81
225428943282 PREDICTED: prolyl 4-hydroxylase subunit 0.973 0.783 0.690 9e-81
>gi|255573113|ref|XP_002527486.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223533126|gb|EEF34884.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 154/211 (72%), Positives = 185/211 (87%)

Query: 13  GLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQS 72
           GLP  +L+CS FF+AGFY ST +S+DVP I+P+LR LEV ++E    +P G TG++ I+S
Sbjct: 14  GLPAVILVCSVFFVAGFYASTLISQDVPVIKPRLRMLEVTDEEKHQAMPRGVTGESYIES 73

Query: 73  IPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGT 132
           IPFQVLSW+PRA+YFP+FA+ EQC++II  AK RLKPS LALR+GET ESTKGTRTSSGT
Sbjct: 74  IPFQVLSWKPRAVYFPDFATPEQCKNIIEMAKLRLKPSGLALRKGETAESTKGTRTSSGT 133

Query: 133 FISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQM 192
           F+SASED TG L+ IEHKIARATM+P++HGEAFN+LRYEIGQKYDSHYD+FNPAEYGPQM
Sbjct: 134 FLSASEDGTGTLDFIEHKIARATMIPRSHGEAFNILRYEIGQKYDSHYDSFNPAEYGPQM 193

Query: 193 SQRLASFLLYLSDVEEGGETMFPFEVDLQIS 223
           SQR+ASFLLYLSDVE+GGETMFPFE  ++IS
Sbjct: 194 SQRVASFLLYLSDVEKGGETMFPFENGVKIS 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297798522|ref|XP_002867145.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297312981|gb|EFH43404.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|385137888|gb|AFI41205.1| oxygenase protein, partial [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18418321|ref|NP_567941.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gi|17381226|gb|AAL36425.1| unknown protein [Arabidopsis thaliana] gi|20465827|gb|AAM20018.1| unknown protein [Arabidopsis thaliana] gi|21592377|gb|AAM64328.1| putative dioxygenase [Arabidopsis thaliana] gi|332660892|gb|AEE86292.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224103711|ref|XP_002313164.1| predicted protein [Populus trichocarpa] gi|222849572|gb|EEE87119.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428938|ref|XP_002262952.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296083079|emb|CBI22483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448264|ref|XP_004141886.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147823227|emb|CAN70872.1| hypothetical protein VITISV_009065 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449511009|ref|XP_004163837.1| PREDICTED: LOW QUALITY PROTEIN: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225428943|ref|XP_002263094.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296083076|emb|CBI22480.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.955 0.753 0.704 2e-81
TAIR|locus:1005716656274 P4H13 "prolyl 4-hydroxylase 13 0.872 0.722 0.5 4.2e-47
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.903 0.706 0.359 8.2e-28
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.599 0.473 0.475 1e-27
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.594 0.467 0.471 1.3e-27
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.889 0.694 0.347 3.6e-25
TAIR|locus:2088892 288 AT3G28490 [Arabidopsis thalian 0.590 0.465 0.421 3.8e-23
TAIR|locus:2125344272 AT4G35820 [Arabidopsis thalian 0.555 0.463 0.382 1.4e-22
TAIR|locus:2081106 299 P4H2 "prolyl 4-hydroxylase 2" 0.590 0.448 0.438 3.4e-22
TAIR|locus:2144960 298 AT5G18900 [Arabidopsis thalian 0.590 0.449 0.438 4.3e-22
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 155/220 (70%), Positives = 183/220 (83%)

Query:     1 MKGKAKR-SSTKLGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVE--KENE 57
             MK + K     KLGL T ++ CS  FL GFYGST LS++VP ++P+LR L++VE  +E  
Sbjct:     1 MKSRLKSYRRKKLGLATVIVFCSLCFLFGFYGSTLLSQNVPRVKPRLRMLDMVENGEEEA 60

Query:    58 SGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQG 117
             S +PHG TG+ SI SIPFQVLSWRPRA+YFPNFA+AEQCQ+II  AK  LKPS LALR+G
Sbjct:    61 SSMPHGVTGEESIGSIPFQVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALALRKG 120

Query:   118 ETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYD 177
             ET E+TKGTRTSSGTFISASE+ TG L+ +E KIARATM+P++HGE+FN+LRYE+GQKYD
Sbjct:   121 ETAENTKGTRTSSGTFISASEESTGALDFVERKIARATMIPRSHGESFNILRYELGQKYD 180

Query:   178 SHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFE 217
             SHYD FNP EYGPQ SQR+ASFLLYLSDVEEGGETMFPFE
Sbjct:   181 SHYDVFNPTEYGPQSSQRIASFLLYLSDVEEGGETMFPFE 220
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=RCA
TAIR|locus:1005716656 P4H13 "prolyl 4-hydroxylase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.7__720__AT4G33910.1
annotation not avaliable (288 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
PLN00052 310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 3e-29
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 9e-24
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  110 bits (277), Expect = 3e-29
 Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 14/163 (8%)

Query: 63  GETGDASIQSI----PF-----QVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLA 113
           GE GD  + ++    PF     + +SW+PR   +  F S  +C  ++  AKK+++ S +A
Sbjct: 26  GEAGDDGVGAVAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVA 85

Query: 114 LRQ-GETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEI 172
             + G++V S    RTSSG F+   +D   ++  IE +IA  T LP+ + E   +LRYE 
Sbjct: 86  DNKSGKSVMSE--VRTSSGMFLDKRQDP--VVSRIEERIAAWTFLPEENAENIQILRYEH 141

Query: 173 GQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFP 215
           GQKY+ H+D F+          R A+ L+YLS V++GGET+FP
Sbjct: 142 GQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFP 184

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 227
PLN00052 310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 99.93
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.67
PHA02813 354 hypothetical protein; Provisional 99.28
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.16
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.65
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 98.52
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 97.93
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 97.5
PHA02866 333 Hypothetical protein; Provisional 96.96
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 96.55
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 96.49
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 96.29
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 94.45
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 94.26
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 93.8
KOG3200224 consensus Uncharacterized conserved protein [Funct 92.81
TIGR01762 288 chlorin-enz chlorinating enzymes. This model repre 90.89
PHA02923 315 hypothetical protein; Provisional 84.58
KOG3844 476 consensus Predicted component of NuA3 histone acet 81.67
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.3e-38  Score=282.51  Aligned_cols=153  Identities=33%  Similarity=0.599  Sum_probs=131.1

Q ss_pred             CCCCCCcccccccEEeecCCcEEEecCCCCHHHHHHHHHHHhhccCccceeccCCceeeeccceeecceeEecCCCChHH
Q 027189           63 GETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTG  142 (227)
Q Consensus        63 ~~~~~~~l~~~P~k~ls~~P~I~~i~nfLs~~EC~~Li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~  142 (227)
                      +..+.+.+....+++|||+|+|++|+||||++||++||+++++++++|++.+..+. ....+++|+|+++|++..+|  +
T Consensus        35 ~~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g-~~~~s~~RTS~~~~l~~~~d--p  111 (310)
T PLN00052         35 AVAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSG-KSVMSEVRTSSGMFLDKRQD--P  111 (310)
T ss_pred             cccCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCC-ccccCCCEEecceeecCCCC--H
Confidence            34444555655667999999999999999999999999999999999998754321 22456799999999987766  4


Q ss_pred             HHHHHHHHHHHhcCCCCCCCccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccCCC
Q 027189          143 ILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEV  218 (227)
Q Consensus       143 v~~~I~~ri~~~tglp~~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~  218 (227)
                      ++++|++||++++++|.++.|.+||+||++||+|++|+|++........+++|++|+|+|||||++||||+||++.
T Consensus       112 vv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~  187 (310)
T PLN00052        112 VVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAE  187 (310)
T ss_pred             HHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcc
Confidence            9999999999999999999999999999999999999999875433335689999999999999999999999984

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 4e-25
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 4e-25
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 5e-25
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 1e-23
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 9e-18
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 86/141 (60%), Gaps = 7/141 (4%)
Query: 78  LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 136
           LSW PRA    NF S E+C  I+  A+ K +K S +    G++V+S    RTS+GT+ + 
Sbjct: 25  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 82
Query: 137 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQM-SQ 194
            ED   ++  IE ++A+ TM+P  + E   VL Y  GQKY+ HYD F +P   GP+   Q
Sbjct: 83  GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 195 RLASFLLYLSDVEEGGETMFP 215
           R+ + L+YL+ VEEGGET+ P
Sbjct: 141 RVVTMLMYLTTVEEGGETVLP 161
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 2e-45
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 3e-45
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 1e-04
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
 Score =  149 bits (378), Expect = 2e-45
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 46  LRTLEVVEKENESGLPHGETGDASIQSIPFQV--LSWRPRALYFPNFASAEQCQSIIATA 103
           +     + +  E  +   +      +    Q+      P  +   N  S E+C  +I  +
Sbjct: 1   MTNNNQIGENKEQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELS 60

Query: 104 KKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGE 163
           K +L  S++      +       RTSSG F+  +E    +   IE +I+    +P +HGE
Sbjct: 61  KSKLARSKVG-----SSRDVNDIRTSSGAFLDDNE----LTAKIEKRISSIMNVPASHGE 111

Query: 164 AFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFP 215
             ++L YE+ Q+Y +HYD F           R+++ ++YL+DVEEGGET FP
Sbjct: 112 GLHILNYEVDQQYKAHYDYFAEHSRSAAN-NRISTLVMYLNDVEEGGETFFP 162
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.8
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.62
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 97.38
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 96.07
2fct_A 313 Syringomycin biosynthesis enzyme 2; mononuclear ir 94.6
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 93.79
2rdq_A 288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 92.98
2a1x_A 308 Phytanoyl-COA dioxygenase; beta jelly roll, double 92.88
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 92.85
3emr_A 310 ECTD; double stranded beta helix, oxidoreductase; 91.71
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 91.29
3gja_A 319 CYTC3; halogenase, beta barrel, biosynthetic prote 89.76
3nnf_A 344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 87.75
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 87.62
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 81.16
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
Probab=100.00  E-value=2.3e-34  Score=245.18  Aligned_cols=149  Identities=31%  Similarity=0.538  Sum_probs=121.2

Q ss_pred             CCCCCCCCCcccccccEEeecCCcEEEecCCCCHHHHHHHHHHHhhccCccceeccCCceeeeccceeecceeEecCCCC
Q 027189           60 LPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASED  139 (227)
Q Consensus        60 ~~~~~~~~~~l~~~P~k~ls~~P~I~~i~nfLs~~EC~~Li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed  139 (227)
                      .+.|..-.-.-+..+++++|++|+|++|+||||++||++|+++|++.+++|++...     ...+++|+|+++|++.  +
T Consensus        17 ~~~~~~~~~~~r~v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~-----~~~~~~RtS~~~wl~~--~   89 (216)
T 3itq_A           17 DHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS-----RDVNDIRTSSGAFLDD--N   89 (216)
T ss_dssp             CCCSSEEECSSCEEEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC-------------CCCCGGGTTCEECCC--C
T ss_pred             cCCCCEEecCCceEEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC-----CccCCcEeeeeEEeCC--c
Confidence            33444333333556777999999999999999999999999999999999998321     2457799999999986  3


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCccccEEEcCCCCCcccccCCCCCCCCCCCCCceeEEEEEeccCCCCCcceeccCCC
Q 027189          140 KTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEV  218 (227)
Q Consensus       140 ~~~v~~~I~~ri~~~tglp~~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~  218 (227)
                        +++++|++||++++|+|.+.+|.+|++||++||+|++|+|++..... ...++|++|+++||||+++||+|+||.++
T Consensus        90 --~~v~~i~~Ri~~~~gl~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~-~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~  165 (216)
T 3itq_A           90 --ELTAKIEKRISSIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSR-SAANNRISTLVMYLNDVEEGGETFFPKLN  165 (216)
T ss_dssp             --HHHHHHHHHHHHHHTSCGGGBCCCEEEEECBTCCEEEECSSCCTTSG-GGGGCEEEEEEEECSCCSEECCEEETTTT
T ss_pred             --HHHHHHHHHHHHhcCceeccccceeEEEeCCCCccccccCCCcCCCc-ccCCceEEEEEEecccCCcCceeEecCCC
Confidence              58999999999999999999999999999999999999999875321 12489999999999999999999999864
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
d2fcta1 308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 95.71
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.25
d2a1xa1 296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 93.67
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 89.77
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Syringomycin biosynthesis enzyme 2, SyrB2
species: Pseudomonas syringae pv. syringae [TaxId: 321]

Probab=95.71  E-value=0.017  Score=47.45  Aligned_cols=126  Identities=11%  Similarity=0.003  Sum_probs=60.5

Q ss_pred             EEecCCCCHHHHHHHHHHHhhccCccceec-cCCceeeeccceeecceeEecCCCChH--HH--HHHHHHHHHHhcCCCC
Q 027189           85 LYFPNFASAEQCQSIIATAKKRLKPSQLAL-RQGETVESTKGTRTSSGTFISASEDKT--GI--LELIEHKIARATMLPQ  159 (227)
Q Consensus        85 ~~i~nfLs~~EC~~Li~~a~~~l~~s~v~~-~~G~~~~~~~~~RtS~~~~l~~~ed~~--~v--~~~I~~ri~~~tglp~  159 (227)
                      +++.|+|+++|+++|.+..+..+....... ............+. ...++.   .+.  .+  -..|.+.++.+.|-+.
T Consensus        19 l~i~~~~s~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~l~~~p~il~~v~~llG~~~   94 (308)
T d2fcta1          19 IGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIAN-YDRHLD---DDFLASHICRPEICDRVESILGPNV   94 (308)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHTCCTTCSCCCCCC----CGGGG-BCGGGT---CHHHHHHTTCHHHHHHHHHHHCSCE
T ss_pred             EECcCccCHHHHHHHHHHHHHHHhhcccccccccccccCccceee-ehhhhc---CHHHHHhhcCchhhhHHHHhhcccc
Confidence            578999999999999887754221111110 00000000011111 111111   110  00  1234455666667432


Q ss_pred             CCCccccEEEcCCCCCcccccCCCCCCCCC--------CCCCceeEEEEEeccCCC-CCcceec
Q 027189          160 THGEAFNVLRYEIGQKYDSHYDAFNPAEYG--------PQMSQRLASFLLYLSDVE-EGGETMF  214 (227)
Q Consensus       160 ~~~E~lqv~rY~~G~~Y~~H~D~~~~~~~~--------~~~~~R~~T~liYLNDv~-eGGeT~F  214 (227)
                      ......-+.+...++.+.||.|...-...+        .......+|+.+||.|+. +.|++.|
T Consensus        95 ~~~~~~~~~k~p~~~~~~wHqD~~y~~~~~~~~~~~~~~~~~~~~vtvwiaL~D~~~enG~l~v  158 (308)
T d2fcta1          95 LCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTITVWTAFTDANIANGCLQF  158 (308)
T ss_dssp             EEEEEEEEEECTTCCEECCBCCSSSCTTTSSCSEECCTTSCCCSCEEEEEESSCBCTTBTCEEE
T ss_pred             eeeecccccccccccccccccccccccCCCCcccccCCCCCCCceEEEEEecccccccceeEEE
Confidence            222222234554456688999975321100        112456899999999974 4455554
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure