Citrus Sinensis ID: 027192

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcccEccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHccHHHHHHHHHHcccccEEEccccHEEEEccccccc
Coil and Loop (DISEMBL)
megsiaktlyseslqlsdleldppsttnlsgcdggdlldgddgsvwggsneefdietDLDREWQRRRDQFHTIgyrdgllagketsaqegfnmgfkesfhsgynwglVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAveqsegaeggsnvtglqnqssdrsRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Flexible Loop (DISEMBL)
MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSneefdietdldrewQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVeqsegaeggsnvtglqnqssdRSRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Low Complexity Region (SEG)
MEGSIAKTLYseslqlsdleldppsTTNlsgcdggdlldgddgsvwggsNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Disordered region (IsUnstruct)
********************************************VWGG**EEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILT********************************FGELESIILETPAIQVHLEVQKYLVSLCND***
Disordered Region (DISOPRED)
****************************************DDGSVWGG*N*******************FHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCL**********************************************************************************ILETPAIQVHLEVQKYLVSLCNDI**
Disordered Region (DISEMBL)
MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAV*************************ENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Disordered Region (DISPRO)
****IAK*LY*ESLQLSDLELDP*****************DDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKK**************************LENHFGELESIILETPAIQVHLEVQKYLVSLCNDIG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQKYLVSLCNDIGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q9NRH1	226	Yae1 domain-containing pr	yes	no	0.327	0.327	0.415	1e-07

>sp|Q9NRH1|YAED1_HUMAN Yae1 domain-containing protein 1 OS=Homo sapiens GN=YAE1D1 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 40  GDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESF 99
           GD G V+   +EE D      REWQ    +    GYRDG+ AGK  + Q+GFN G+K+  
Sbjct: 14  GDKGDVF---DEEADESLLAQREWQSNMQRRVKEGYRDGIDAGKAVTLQQGFNQGYKKGA 70

Query: 100 HSGYNWGLVRGVTSALV 116
               N+G +RG  SAL+
Sbjct: 71  EVILNYGRLRGTLSALL 87

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
225438299	219	PREDICTED: uncharacterized protein LOC10	0.951	0.981	0.639	1e-71
296082643	274	unnamed protein product [Vitis vinifera]	0.942	0.777	0.645	1e-71
224057370	206	predicted protein [Populus trichocarpa]	0.911	1.0	0.644	2e-70
224072849	215	predicted protein [Populus trichocarpa]	0.929	0.976	0.646	2e-69
255544081	199	conserved hypothetical protein [Ricinus	0.876	0.994	0.629	3e-65
33945879	218	hypothetical protein [Lotus japonicus] g	0.933	0.967	0.562	2e-61
356538735	213	PREDICTED: uncharacterized protein LOC10	0.924	0.981	0.582	7e-56
357473421	289	hypothetical protein MTR_4g071040 [Medic	0.920	0.719	0.539	3e-54
388509018	208	unknown [Medicago truncatula]	0.902	0.980	0.545	4e-54
357473423	281	hypothetical protein MTR_4g071040 [Medic	0.902	0.725	0.545	6e-54

>gi|225438299|ref|XP_002270204.1| PREDICTED: uncharacterized protein LOC100262774 [Vitis vinifera]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/219 (63%), Positives = 170/219 (77%), Gaps = 4/219 (1%)

Query: 1   MEGSIAKTLYSESLQLSDLELDPPSTTNLSG---CD-GGDLLDGDDGSVWGGSNEEFDIE 56
           MEGS+A  LYSE+LQLS ++LD  STTNL     CD  GD L  +D S+  GS+E+ D  
Sbjct: 1   MEGSLADELYSEALQLSRVKLDHGSTTNLKQDELCDSNGDDLWHEDASLGDGSDEDLDKV 60

Query: 57  TDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 116
           +DLDREWQRRRDQFHTIGYRDG++AGKE SAQEGFN+GFKES   GY WGLVRGVTSAL 
Sbjct: 61  SDLDREWQRRRDQFHTIGYRDGVIAGKEASAQEGFNIGFKESVFVGYKWGLVRGVTSALA 120

Query: 117 CLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSN 176
           CLP+ LKE L+ETQE RNKFQ LY++VHSLST +ALKLFHD IL  K+VEQ+   E  SN
Sbjct: 121 CLPDGLKEKLVETQEARNKFQCLYKTVHSLSTDNALKLFHDGILKNKSVEQTGNVESSSN 180

Query: 177 VTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 215
           V  +Q++SSD + LENHF EL+S+I E+P ++VHL + +
Sbjct: 181 VADMQDRSSDSNVLENHFEELQSLIRESPTVKVHLTIDQ 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082643|emb|CBI21648.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/217 (64%), Positives = 169/217 (77%), Gaps = 4/217 (1%)

Query: 1   MEGSIAKTLYSESLQLSDLELDPPSTTNLSG---CDG-GDLLDGDDGSVWGGSNEEFDIE 56
           MEGS+A  LYSE+LQLS ++LD  STTNL     CD  GD L  +D S+  GS+E+ D  
Sbjct: 56  MEGSLADELYSEALQLSRVKLDHGSTTNLKQDELCDSNGDDLWHEDASLGDGSDEDLDKV 115

Query: 57  TDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 116
           +DLDREWQRRRDQFHTIGYRDG++AGKE SAQEGFN+GFKES   GY WGLVRGVTSAL 
Sbjct: 116 SDLDREWQRRRDQFHTIGYRDGVIAGKEASAQEGFNIGFKESVFVGYKWGLVRGVTSALA 175

Query: 117 CLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSN 176
           CLP+ LKE L+ETQE RNKFQ LY++VHSLST +ALKLFHD IL  K+VEQ+   E  SN
Sbjct: 176 CLPDGLKEKLVETQEARNKFQCLYKTVHSLSTDNALKLFHDGILKNKSVEQTGNVESSSN 235

Query: 177 VTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEV 213
           V  +Q++SSD + LENHF EL+S+I E+P ++VHL +
Sbjct: 236 VADMQDRSSDSNVLENHFEELQSLIRESPTVKVHLTI 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057370|ref|XP_002299217.1| predicted protein [Populus trichocarpa] gi|222846475|gb|EEE84022.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 138/214 (64%), Positives = 163/214 (76%), Gaps = 8/214 (3%)

Query: 1   MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLD 60
           MEGSIAK LYSESLQLS  EL             GDL   DDG +W  S+EE D ++DLD
Sbjct: 1   MEGSIAKELYSESLQLSSAELGSEPIAF------GDL--QDDGPLWDVSDEELDRDSDLD 52

Query: 61  REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPN 120
           REWQRR DQFHTIGYRDGL++GKE SAQEGFN GFK+S  +GYNWG+ RGVTSAL CLP+
Sbjct: 53  REWQRRHDQFHTIGYRDGLISGKEASAQEGFNNGFKQSVLAGYNWGVARGVTSALACLPD 112

Query: 121 ELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGL 180
            LKE LIE QEKRNKFQ +YE+VHS+STTDALK FHDD+L KK  EQSE ++  SNV+G+
Sbjct: 113 ALKERLIEDQEKRNKFQGVYETVHSVSTTDALKFFHDDVLRKKEEEQSEHSKASSNVSGM 172

Query: 181 QNQSSDRSRLENHFGELESIILETPAIQVHLEVQ 214
              SS  S LEN+ GEL+S++LE+PAI+ HL V+
Sbjct: 173 SKDSSGCSHLENYVGELQSLLLESPAIKSHLSVK 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072849|ref|XP_002303911.1| predicted protein [Populus trichocarpa] gi|222841343|gb|EEE78890.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 141/218 (64%), Positives = 166/218 (76%), Gaps = 8/218 (3%)

Query: 1   MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLD 60
           MEGS AK LYSESLQLS+ EL      N      GDL D D GS+W  S EE D E+DLD
Sbjct: 1   MEGSFAKELYSESLQLSNAELGSMPIGN------GDLQD-DGGSLWDDSVEELDRESDLD 53

Query: 61  REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPN 120
           REWQRR DQFHTIGYRDGL+AGKE SAQEGFN+GFK+S   GYNWGLVRGVTS + CLP+
Sbjct: 54  REWQRRHDQFHTIGYRDGLIAGKEDSAQEGFNVGFKQSVLVGYNWGLVRGVTSVVACLPD 113

Query: 121 ELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGL 180
           +LKE LIETQEKRNKFQ LYESVHS+ST DALK FHDDIL KKA+EQ E  +  S+V  +
Sbjct: 114 DLKEKLIETQEKRNKFQGLYESVHSISTVDALKFFHDDILRKKAMEQRELEKASSDVARM 173

Query: 181 -QNQSSDRSRLENHFGELESIILETPAIQVHLEVQKYL 217
            ++ SS  S LEN+ GEL+S++L++P I+ HL V++ L
Sbjct: 174 NKDDSSCCSNLENYVGELQSLLLDSPTIKSHLSVKQLL 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544081|ref|XP_002513103.1| conserved hypothetical protein [Ricinus communis] gi|223548114|gb|EEF49606.1| conserved hypothetical protein [Ricinus communis]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/213 (62%), Positives = 158/213 (74%), Gaps = 15/213 (7%)

Query: 1   MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLD 60
           MEG  A+ LYSE+LQLS LEL P          G D    +DG+ WG S+EE    +DLD
Sbjct: 1   MEGGFAEELYSETLQLSKLELVP----------GHD----EDGAFWGDSDEELHKSSDLD 46

Query: 61  REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPN 120
           REW+RRRDQFHTIGYRDGLLAGKE  AQEGFN GFK+S   G++WGLVRGVTSA  CLP+
Sbjct: 47  REWERRRDQFHTIGYRDGLLAGKEAIAQEGFNAGFKQSVLLGFDWGLVRGVTSAFACLPD 106

Query: 121 ELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGL 180
            LKE LIET EKRNKF +LYESVHSLSTTDALKLF+DDI++KKA EQSE A   S+  GL
Sbjct: 107 GLKEKLIETPEKRNKFLALYESVHSLSTTDALKLFYDDIVSKKAAEQSEHATASSDTAGL 166

Query: 181 QNQSSDRSRLENHFGELESIILETPAIQVHLEV 213
           Q + SD   L N+ GEL+S+++E+PAI  H+ V
Sbjct: 167 QYKISD-CILGNYGGELQSLLIESPAIDSHIRV 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33945879|emb|CAE45590.1| hypothetical protein [Lotus japonicus] gi|164605520|dbj|BAF98586.1| CM0216.520.nc [Lotus japonicus]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/217 (56%), Positives = 157/217 (72%), Gaps = 6/217 (2%)

Query: 3   GSIAKTLYSESLQLSDLELDPPSTT----NLSGCDGGDLLDGDDGSVWGGSNEEFDIETD 58
           G IA+ +Y+ESLQLS LEL           L+ CD  D   G DGSVW  S+++ +  +D
Sbjct: 4   GRIAEEIYAESLQLSKLELTSTGAAEQENKLNDCDDSDF--GLDGSVWDDSDDKLERSSD 61

Query: 59  LDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCL 118
           L+REWQRR DQFHTIGYRDGL+AGKE SAQEGFN+GFK+S H+G+NWG+VRGV SA   L
Sbjct: 62  LNREWQRRHDQFHTIGYRDGLIAGKEASAQEGFNIGFKQSVHAGFNWGVVRGVASAFAYL 121

Query: 119 PNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVT 178
           P++LKE L+ET E+R++FQ L+ESVHSLSTTDAL+LFH+D   ++A  QSE  E    + 
Sbjct: 122 PDKLKERLVETLERRDEFQQLHESVHSLSTTDALRLFHEDFKAQEASGQSEHVEDSCGIA 181

Query: 179 GLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 215
           GLQ Q+S  S L N+ G+LES+I ++P+I  HL   K
Sbjct: 182 GLQEQASHVSHLTNYSGKLESLIHDSPSIDSHLPEPK 218

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538735|ref|XP_003537856.1| PREDICTED: uncharacterized protein LOC100783658 [Glycine max]

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 123/211 (58%), Positives = 157/211 (74%), Gaps = 2/211 (0%)

Query: 1   MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLD 60
           MEG +A+ LY+ESLQLS LEL   ST+     +  +  D DD S+W  S+++ +  +DLD
Sbjct: 1   MEGRLAEELYAESLQLSKLELT--STSADDQENKANDCDDDDLSLWDDSDDKLESLSDLD 58

Query: 61  REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPN 120
           REWQRR DQFHTIGYRDGL+A KE SAQEGFN+GFK+S   GY+WG+VRGVTSA   LP 
Sbjct: 59  REWQRRHDQFHTIGYRDGLIAAKEASAQEGFNIGFKQSVLDGYSWGVVRGVTSAFSHLPR 118

Query: 121 ELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGL 180
           +LK  LIETQEKRN+FQ LYESVHSLSTTDAL+LF  +I  ++A+EQSE +E   +  GL
Sbjct: 119 QLKARLIETQEKRNEFQGLYESVHSLSTTDALRLFSKEIKAQEALEQSEHSEVSHHTAGL 178

Query: 181 QNQSSDRSRLENHFGELESIILETPAIQVHL 211
           Q Q S  S+L ++ G+LES++ + PAI +HL
Sbjct: 179 QEQPSHGSQLRSYRGQLESLLCDFPAIDIHL 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473421|ref|XP_003606995.1| hypothetical protein MTR_4g071040 [Medicago truncatula] gi|355508050|gb|AES89192.1| hypothetical protein MTR_4g071040 [Medicago truncatula]

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 156/215 (72%), Gaps = 7/215 (3%)

Query: 1   MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLD 60
           MEG +A+ LY+ESL++S LEL    ++NL+  D GD L+ D G      + +  + +DLD
Sbjct: 82  MEGKLAEELYAESLKVSKLEL----SSNLAD-DQGDKLN-DCGDDSFWDDSDDKV-SDLD 134

Query: 61  REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPN 120
           REWQRRRDQFHT GYR+GL+A KE SAQEGFN+GFK+S  +GY+WG+VRG +SA   LP+
Sbjct: 135 REWQRRRDQFHTSGYREGLIAAKEASAQEGFNIGFKQSVCAGYSWGVVRGASSAFANLPD 194

Query: 121 ELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGL 180
           +LKE L+ET EKRN+FQ LYESV SLSTTDAL+LFH+D   ++A++Q+E  +  S+   L
Sbjct: 195 QLKEKLVETLEKRNEFQGLYESVQSLSTTDALRLFHEDYKAQEALKQNEHGDVSSDTVSL 254

Query: 181 QNQSSDRSRLENHFGELESIILETPAIQVHLEVQK 215
           Q Q+S  S L  + G+LES+I ++PAI  HL   K
Sbjct: 255 QQQTSHNSPLIKYHGQLESLISDSPAIDSHLPEPK 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509018|gb|AFK42575.1| unknown [Medicago truncatula]

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 115/211 (54%), Positives = 155/211 (73%), Gaps = 7/211 (3%)

Query: 1   MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLD 60
           MEG +A+ LY+ESL++S LEL    ++NL+  D GD L+ D G      + +  + +DLD
Sbjct: 1   MEGKLAEELYAESLKVSKLEL----SSNLAD-DQGDKLN-DCGDDSFWDDSDDKV-SDLD 53

Query: 61  REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPN 120
           REWQRRRDQFHT GYR+GL+A KE SAQEGFN+GFK+S  +GY+WG+VRG +SA   LP+
Sbjct: 54  REWQRRRDQFHTSGYREGLIAAKEASAQEGFNIGFKQSVCAGYSWGVVRGASSAFANLPD 113

Query: 121 ELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGL 180
           +LKE L+ET EKRN+FQ LYESV SLSTTDAL+LFH+D   ++A++Q+E  +  S+   L
Sbjct: 114 QLKEKLVETLEKRNEFQGLYESVQSLSTTDALRLFHEDYKAQEALKQNEHGDVSSDTVSL 173

Query: 181 QNQSSDRSRLENHFGELESIILETPAIQVHL 211
           Q Q+S  S L  + G+LES+I ++PAI  HL
Sbjct: 174 QQQTSHNSPLIKYHGQLESLISDSPAIDSHL 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473423|ref|XP_003606996.1| hypothetical protein MTR_4g071040 [Medicago truncatula] gi|355508051|gb|AES89193.1| hypothetical protein MTR_4g071040 [Medicago truncatula]

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 115/211 (54%), Positives = 155/211 (73%), Gaps = 7/211 (3%)

Query: 1   MEGSIAKTLYSESLQLSDLELDPPSTTNLSGCDGGDLLDGDDGSVWGGSNEEFDIETDLD 60
           MEG +A+ LY+ESL++S LEL    ++NL+  D GD L+ D G      + +  + +DLD
Sbjct: 74  MEGKLAEELYAESLKVSKLEL----SSNLAD-DQGDKLN-DCGDDSFWDDSDDKV-SDLD 126

Query: 61  REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPN 120
           REWQRRRDQFHT GYR+GL+A KE SAQEGFN+GFK+S  +GY+WG+VRG +SA   LP+
Sbjct: 127 REWQRRRDQFHTSGYREGLIAAKEASAQEGFNIGFKQSVCAGYSWGVVRGASSAFANLPD 186

Query: 121 ELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGL 180
           +LKE L+ET EKRN+FQ LYESV SLSTTDAL+LFH+D   ++A++Q+E  +  S+   L
Sbjct: 187 QLKEKLVETLEKRNEFQGLYESVQSLSTTDALRLFHEDYKAQEALKQNEHGDVSSDTVSL 246

Query: 181 QNQSSDRSRLENHFGELESIILETPAIQVHL 211
           Q Q+S  S L  + G+LES+I ++PAI  HL
Sbjct: 247 QQQTSHNSPLIKYHGQLESLISDSPAIDSHL 277

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2009333	208	AT1G34570 "AT1G34570" [Arabido	0.716	0.778	0.442	2e-31
TAIR|locus:2009253	735	EMB2756 "EMBRYO DEFECTIVE 2756	0.358	0.110	0.380	8.9e-07
SGD|S000003828	141	YAE1 "Protein that forms a com	0.274	0.439	0.338	3.5e-05

TAIR|locus:2009333 AT1G34570 "AT1G34570" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 73/165 (44%), Positives = 111/165 (67%)

Query:    50 NEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVR 109
             +E++     LD E ++RR +FH+ GYRDG++ GKE  AQEG+N G+KES  +GY +G+VR
Sbjct:    44 DEDYSEARVLDNENEQRRVKFHSAGYRDGIVVGKEAIAQEGYNFGYKESVLAGYKFGIVR 103

Query:   110 GVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSE 169
             GV+SAL  LP E +E LI+ QE R KFQ L+ SVH+LST  A+K F++ + TK+  E+S 
Sbjct:   104 GVSSALAFLPVEFREKLIDEQETREKFQKLHSSVHALSTEVAMKQFYETLTTKQGEEKS- 162

Query:   170 GAEG--GSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLE 212
             G EG    +V+G  +  +  + L ++  EL S++ ++P I+V  +
Sbjct:   163 GEEGPDSCSVSGSCSGVNVTADLGSYVTELSSLLDKSPTIEVKFD 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009253 EMB2756 "EMBRYO DEFECTIVE 2756" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query:   111 VTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQS-- 168
             + + L  LP+EL+E LI+ QE R KFQ L+  VH+LST  A+K F+  + TK+ +  S  
Sbjct:     1 MVNVLAFLPDELREKLIDEQETREKFQRLHSYVHALSTEVAMKRFYGALTTKEGISGSGV 60

Query:   169 -EGAEGGSNVTGLQNQSSDRSRLE 191
                ++ GS VT L +      ++E
Sbjct:    61 NATSDWGSYVTELSSLLEKSPKIE 84

GO:0005634 "nucleus" evidence=ISM

GO:0006672 "ceramide metabolic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

SGD|S000003828 YAE1 "Protein that forms a complex with Lto1p and Rli1p" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 102 (41.0 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query:    54 DIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTS 113
             D+ET+   +  + R+     GY DG+++ KE   QEGFN GF      G   G++ G+  
Sbjct:    14 DVETERSPDLVKLRENHSKRGYLDGIVSSKEEKLQEGFNDGFPTGAKLGKQVGIIMGILL 73

Query:   114 AL 115
              L
Sbjct:    74 GL 75


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.131   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      226       190   0.00091  110 3  11 23  0.37    33
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  160 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.41u 0.10s 18.51t   Elapsed:  00:00:01
  Total cpu time:  18.41u 0.10s 18.51t   Elapsed:  00:00:01
  Start:  Fri May 10 04:18:37 2013   End:  Fri May 10 04:18:38 2013

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IGI;IPI

GO:0006413 "translational initiation" evidence=IGI;IPI

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_I000107 hypothetical protein (206 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
pfam09811	39	pfam09811, Yae1_N, Essential protein Yae1, N termi	7e-09

>gnl|CDD|204317 pfam09811, Yae1_N, Essential protein Yae1, N terminal

 Score = 49.7 bits (120), Expect = 7e-09
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 74  GYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGV 111
           GYR+G+  GKE   QEGF+ G++E    G   G + G+
Sbjct: 1   GYREGIAEGKEEGLQEGFDEGYQEGAQLGLELGQLLGL 38

Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG4774	190	consensus Uncharacterized conserved protein [Funct	99.95
KOG4595	139	consensus Uncharacterized conserved protein [Funct	99.48
PF09811	39	Yae1_N: Essential protein Yae1, N terminal; InterP	99.33
PRK13386	236	fliH flagellar assembly protein H; Provisional	97.85
PRK05687	246	fliH flagellar assembly protein H; Validated	97.72
KOG4595	139	consensus Uncharacterized conserved protein [Funct	97.3
PRK05687	246	fliH flagellar assembly protein H; Validated	96.94
PRK13386	236	fliH flagellar assembly protein H; Provisional	96.78
PF09811	39	Yae1_N: Essential protein Yae1, N terminal; InterP	96.02
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	96.01
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	93.66
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	90.41
PRK06669	281	fliH flagellar assembly protein H; Validated	87.55
KOG4774	190	consensus Uncharacterized conserved protein [Funct	84.15
PRK06669	281	fliH flagellar assembly protein H; Validated	83.78

>KOG4774 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=5.7e-28  Score=205.53  Aligned_cols=169  Identities=25%  Similarity=0.247  Sum_probs=139.5

Q ss_pred             CCCCCCCCCCccccchhhHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhhcC-ch
Q 027192           42 DGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCL-PN  120 (226)
Q Consensus        42 dDDvwgddDee~~~~~~~~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~~l-~~  120 (226)
                      +|+.| .+|++.+...+..+||++++++|.+.||||||.+||++.+|+|||+||++|+.+|+++|.++|+++|+.++ ++
T Consensus        14 ~d~~d-~SDeEsd~~~l~~~elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsall~~f~d   92 (190)
T KOG4774|consen   14 GDKGD-VSDEESDESLLAQRELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSALLSWFHD   92 (190)
T ss_pred             Ccccc-ccCchhHHHHhhcHHHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            45555 44444555556799999999999999999999999999999999999999999999999999999999985 44


Q ss_pred             HHH---HHhHHHHHHHHHHHHHHHHhhcCChHHHhhhhhhhhhhhhhhhcccCCC--CCCcccccccCCCcchhhhhhHH
Q 027192          121 ELK---EMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAE--GGSNVTGLQNQSSDRSRLENHFG  195 (226)
Q Consensus       121 ~lk---~~l~~~~~kr~~L~~L~~sI~sls~~d~L~~fh~~i~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~  195 (226)
                      +++   +.++.+|+-+...+.|+.+|..+++...++-|++.|..+...+.....+  +-+.-.+...+..-+-.+.++..
T Consensus        93 Ene~~~k~~IlkQe~~r~~e~l~khif~~n~~~h~~e~l~~It~k~~~~~~~~Ek~~~~s~d~~s~sgi~~s~~~~~~~~  172 (190)
T KOG4774|consen   93 ENENINKINILKQEVGRCEEYLLKHIFSINPPSHVVELLDSITDKDLCHVVPAEKKIDESKDEKSHSGIDCSYVECCRTQ  172 (190)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhhhcccccccccCCccccccCCCCCcceeeehhhhhH
Confidence            666   8899999999999999999999999999999999999988665543333  32222244444444557899999


Q ss_pred             HHHHHhhhCCcccccc
Q 027192          196 ELESIILETPAIQVHL  211 (226)
Q Consensus       196 ~l~slL~~~p~i~~~~  211 (226)
                      ++.++++.||.+-+..
T Consensus       173 e~~~~~~~spt~~~~~  188 (190)
T KOG4774|consen  173 EHAHSENPSPTWILEQ  188 (190)
T ss_pred             HHhhccCCCCceEeec
Confidence            9999999999987754

>KOG4595 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=9.4e-14  Score=114.90  Aligned_cols=123  Identities=18%  Similarity=0.229  Sum_probs=101.5

Q ss_pred             HHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHhHHH-HHHHHHHHHHH
Q 027192           62 EWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIET-QEKRNKFQSLY  140 (226)
Q Consensus        62 Ew~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~~l~~~lk~~l~~~-~~kr~~L~~L~  140 (226)
                      +.-++++++++.||+||+.+|.+++.-+||..|+.+||.+|..+|+|+|...+|.++   ++.+-..+ .+.++.|.+++
T Consensus        12 ~Iv~lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~Gc~~l~~~~---lhs~~~~ks~~~lr~L~~~l   88 (139)
T KOG4595|consen   12 DIVLLEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILGCVVLWQQL---LHSPKTRKSLRQLRSLISLL   88 (139)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh---ccCCchhcCHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999999999999999999987   33333333 46688888999


Q ss_pred             HHhhcCChHHHhhhhhhhhhhhhhhhcccCCCCCCcccccccCCCcchhhhhhHHHHHHHhhhCCccccccchh
Q 027192          141 ESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQ  214 (226)
Q Consensus       141 ~sI~sls~~d~L~~fh~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~slL~~~p~i~~~~~~~  214 (226)
                      .+++.+|..++.               .    +     .+   .....++|.+++++++||..-|+.+++++.-
T Consensus        89 ~~l~~~~~~~~~---------------d----~-----~~---~~~~nkir~~~~~~~~l~~~k~~~t~s~e~~  135 (139)
T KOG4595|consen   89 PMLNDPPALDET---------------D----V-----QL---IRSKNKIRRKLKGSKSLLGAKPAPTNSVEHK  135 (139)
T ss_pred             hccCCCcccchH---------------H----H-----HH---HHHHHHHHHHHHHHHhcccCccCcccccccc
Confidence            999999888887               1    1     01   1145799999999999999999988877643

>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1

Probab=99.33  E-value=1.2e-12  Score=86.91  Aligned_cols=39  Identities=46%  Similarity=0.963  Sum_probs=37.9

Q ss_pred             chHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHH
Q 027192           74 GYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVT  112 (226)
Q Consensus        74 GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~l  112 (226)
                      ||+||+.+|+++++|+|||.||++|+.+|+++|+++|++
T Consensus         1 GY~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~~   39 (39)
T PF09811_consen    1 GYREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGFA   39 (39)
T ss_pred             ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            899999999999999999999999999999999999974

The exact function has not been determined.

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=97.85  E-value=0.00025  Score=62.94  Aligned_cols=45  Identities=22%  Similarity=0.435  Sum_probs=26.6

Q ss_pred             hcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 027192           72 TIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV  116 (226)
Q Consensus        72 k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~  116 (226)
                      ..||.+|+..|-+.++++||..|+.+|..-|+.-|.-.|...+..
T Consensus        45 ~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~g~~   89 (236)
T PRK13386         45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQ   89 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666666666666666666666666666665555433

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=97.72  E-value=0.00054  Score=60.24  Aligned_cols=48  Identities=31%  Similarity=0.619  Sum_probs=24.6

Q ss_pred             hHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 027192           59 LDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRG  110 (226)
Q Consensus        59 ~~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G  110 (226)
                      ...++..+++.-...||.+|+.+|    .++||..||.+|+.-|+.-|.-.|
T Consensus        57 ~~~~~e~~~~~a~~eG~~~G~~~G----~~~G~~~G~~~G~~~G~~qg~~e~  104 (246)
T PRK05687         57 TEEELEAIRQQAHEEGFAAGKAEG----RAEGYEAGYQEGLAQGLEQGLAEG  104 (246)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555554444555544444    555555555555555555544433

>KOG4595 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.00044  Score=57.85  Aligned_cols=54  Identities=17%  Similarity=0.306  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 027192           60 DREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSA  114 (226)
Q Consensus        60 ~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsa  114 (226)
                      +-+|.-+-. ....=|++|+.+|.+.++.+||-+||..|...|++.|.+.|.+.+
T Consensus         7 ~d~fD~Iv~-lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~G   60 (139)
T KOG4595|consen    7 NDDFDDIVL-LEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILG   60 (139)
T ss_pred             HhHHHHHHH-HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334554443 333448888888888888888888888888888888888888877

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=96.94  E-value=0.0055  Score=53.89  Aligned_cols=27  Identities=30%  Similarity=0.519  Sum_probs=11.0

Q ss_pred             hcchHHHHHhhhhhhhhhhhhhcHHHH
Q 027192           72 TIGYRDGLLAGKETSAQEGFNMGFKES   98 (226)
Q Consensus        72 k~GYrDGi~~GKE~~lQeGFD~Gf~~G   98 (226)
                      ..||.+|+..|.+.+.|+||..||.+|
T Consensus        74 ~~G~~~G~~~G~~~G~~~G~~~G~~qg  100 (246)
T PRK05687         74 AAGKAEGRAEGYEAGYQEGLAQGLEQG  100 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444333

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=96.78  E-value=0.012  Score=52.29  Aligned_cols=30  Identities=13%  Similarity=0.280  Sum_probs=16.1

Q ss_pred             chhhhhhHHHHHHHhhh-CCccccccchhhH
Q 027192          187 RSRLENHFGELESIILE-TPAIQVHLEVQKY  216 (226)
Q Consensus       187 ~~~l~~~~~~l~slL~~-~p~i~~~~~~~~~  216 (226)
                      .+.|-+.+++....|.. ...|.|+++..-|
T Consensus       144 p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~  174 (236)
T PRK13386        144 PQQILALVEETLAALPDDPEQLKVHLNPEEF  174 (236)
T ss_pred             HHHHHHHHHHHHHhccccCCCeEEEECHHHH
Confidence            34455556666666654 3455555555443

>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1

Probab=96.02  E-value=0.012  Score=39.00  Aligned_cols=34  Identities=32%  Similarity=0.611  Sum_probs=18.0

Q ss_pred             cchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHH
Q 027192           73 IGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWG  106 (226)
Q Consensus        73 ~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG  106 (226)
                      .|+.+|..+|-.++.+.||..||..|+.+|+..|
T Consensus         4 eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G   37 (39)
T PF09811_consen    4 EGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKG   37 (39)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555555555555555555555555555555444

The exact function has not been determined.

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.01  E-value=0.052  Score=48.40  Aligned_cols=39  Identities=26%  Similarity=0.550  Sum_probs=30.9

Q ss_pred             HhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHH
Q 027192           69 QFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGL  107 (226)
Q Consensus        69 ~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~  107 (226)
                      .-+..+++++|..|.+.++++||..||.+|+.-|..-|+
T Consensus        54 ~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~   92 (234)
T COG1317          54 ESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR   92 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345577888888888888888888888888888877776

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=93.66  E-value=0.48  Score=42.19  Aligned_cols=26  Identities=8%  Similarity=0.063  Sum_probs=13.3

Q ss_pred             hhhhHHHHHHHhhhCCccccccchhh
Q 027192          190 LENHFGELESIILETPAIQVHLEVQK  215 (226)
Q Consensus       190 l~~~~~~l~slL~~~p~i~~~~~~~~  215 (226)
                      +.+.+++....+..++.|.|+++..-
T Consensus       161 i~~lv~~al~~l~~~~~i~I~v~p~d  186 (255)
T TIGR03825       161 FQALVRQVLSEVREFDEVSIYVHPHW  186 (255)
T ss_pred             HHHHHHHHHHhccCCCcEEEEECHHH
Confidence            34444555555555555555555443

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=90.41  E-value=2.6  Score=37.69  Aligned_cols=40  Identities=28%  Similarity=0.333  Sum_probs=26.8

Q ss_pred             HHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHH
Q 027192           63 WQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSG  102 (226)
Q Consensus        63 w~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG  102 (226)
                      +.--..+=..++|..|-.+|.+.+.|.||.+||.+|..-|
T Consensus        52 ~~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~   91 (234)
T COG1317          52 ELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEG   91 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555566667777777777777777777777776555

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=87.55  E-value=9.7  Score=34.24  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=12.0

Q ss_pred             cchhhhhhHHHHHHHhhhCCcccc
Q 027192          186 DRSRLENHFGELESIILETPAIQV  209 (226)
Q Consensus       186 ~~~~l~~~~~~l~slL~~~p~i~~  209 (226)
                      +...++....++.+++...+.+.|
T Consensus       216 d~~~l~~~~~~l~~~l~~~~~i~I  239 (281)
T PRK06669        216 DYEYVKEQKDELISLLDNEEHLKI  239 (281)
T ss_pred             HHHHHHHhHHHHHHhcCCCCCeEE
Confidence            444555555555555554444443

>KOG4774 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.15  E-value=3  Score=36.66  Aligned_cols=68  Identities=16%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             CCCccccchhhHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 027192           49 SNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV  116 (226)
Q Consensus        49 dDee~~~~~~~~rEw~rl~e~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~lG~l~G~lsal~  116 (226)
                      +|.....++.+.+-.++.-.+=...|..-|-++--.+++-.||-.|-+.|+++|.-.|.+.+.++-+-
T Consensus        24 sd~~~l~~~elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsall~~f~   91 (190)
T KOG4774|consen   24 SDESLLAQRELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSALLSWFH   91 (190)
T ss_pred             hHHHHhhcHHHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            44455555556666666666777888888888888888999999999999999999999999988776

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=83.78  E-value=21  Score=32.15  Aligned_cols=29  Identities=14%  Similarity=0.180  Sum_probs=21.3

Q ss_pred             hhhhhhHHHHHHHhhhCCccccccchhhH
Q 027192          188 SRLENHFGELESIILETPAIQVHLEVQKY  216 (226)
Q Consensus       188 ~~l~~~~~~l~slL~~~p~i~~~~~~~~~  216 (226)
                      .-+....+++...|...+.+.++++..-|
T Consensus       189 ~~i~~li~~al~~l~~~~~i~I~V~p~d~  217 (281)
T PRK06669        189 EIALALVKELLKEVKDATDITIRVNPEDY  217 (281)
T ss_pred             HHHHHHHHHHHHHcCcCCcEEEEECHHHH
Confidence            34667777887888888888888865555

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00