Citrus Sinensis ID: 027202

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMKESYQLLQRTCQLMLLYPRLV
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHcccEEEEEEEccccccccHHHHHHHHHHccccccccccccEEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEcccEEcccccccccccccHHHHcccccccccEEEEHHHHccccccccccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHccEEEEEEEccccccccHHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEEccHHHccccccccccccccccccccHHHHHcccccccEEEEccEEEccccccccccccHHHHHHHHHccccccEEEEEEEEcccccccccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msqsndssnpeekehDLESIFQQKRILRSQVRKTLksmdpslrshedNAIQKIVLeapwfkssqRLCAYISCsalrevdtSKLLSQILqipnadgdtktrkklyvprvedknshmrmFHISSIDDLIANsmnilepapvdadgneredvmqanepvdlfllpglafdrsgrrlgrgggstkslqrkeiggnpslLLCHILCRSWMKESYQLLQRTCQLMLLYPRLV
Flexible Loop (DISEMBL)
msqsndssnpeekehdlesifqqkrilRSQVRKTLKsmdpslrshednAIQKIVLeapwfkssqRLCAYISCSALREVDTSKLLSQIlqipnadgdtktrkklyvprvedknshmrMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFdrsgrrlgrgggstkslqrkeiggnpsLLLCHILCRSWMKESYQLLQRTCQLMLLYPRLV
Low Complexity Region (SEG)
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDrsgrrlgrgggsTKSLQRKEIGGNPSLLLCHILCRSWMKESYQLLQRTCQLMLLYPRLV
Disordered region (IsUnstruct)
************************************************AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNA********KLYVPRV*****HMRMFHISSIDDLIANSMNIL*********************VDLFLLPGLAFD**********************GNPSLLLCHILCRSWMKESYQLLQRTCQLMLLYP***
Disordered Region (DISOPRED)
*************************ILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMKESYQLLQRTCQLMLLYPRLV
Disordered Region (DISEMBL)
******************SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRL**********QRKEIGGNPSLLLCHILCRSWMKESYQLLQRTCQLMLLYPRLV
Disordered Region (DISPRO)
*****************ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMKESYQLLQRTCQLMLLYPRLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIGGNPSLLLCHILCRSWMKESYQLLQRTCQLMLLYPRLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
P80405	201	5-formyltetrahydrofolate	yes	no	0.676	0.761	0.291	2e-11
P49914	203	5-formyltetrahydrofolate	yes	no	0.610	0.679	0.295	3e-11
Q9D110	203	5-formyltetrahydrofolate	yes	no	0.615	0.684	0.278	1e-10
Q9XWE6	206	Probable 5-formyltetrahyd	yes	no	0.601	0.660	0.245	5e-09
P40099	211	5-formyltetrahydrofolate	yes	no	0.703	0.753	0.272	2e-05
Q9P7W2	204	Probable 5-formyltetrahyd	yes	no	0.588	0.651	0.280	5e-05
Q89AD6	195	Uncharacterized protein b	yes	no	0.584	0.676	0.261	7e-05
Q8K9E3	199	Uncharacterized protein B	yes	no	0.659	0.748	0.232	0.0004

>sp|P80405|MTHFS_RABIT 5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus GN=MTHFS PE=1 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 22/175 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR+++++ L+++    R      + + V+    ++ SQR+  ++S     E++T ++
Sbjct: 10  KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEI 67

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
           +  I Q           K  ++PR   +++HM M  ++S D++ +    S NI +P+  D
Sbjct: 68  IKDIFQ---------QGKVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESD 118

Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKS-LQR--KEIGGNP 192
                RE+ + A   +DL  +PGL FDR+G RLGRG G   + LQR  ++ G  P
Sbjct: 119 T----REEAL-ATGGLDLIFMPGLGFDRNGNRLGRGRGYYDTYLQRCLQQQGAKP 168

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.
Oryctolagus cuniculus (taxid: 9986)
EC: 6EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|P49914|MTHFS_HUMAN 5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1 SV=2

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 21/159 (13%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E++T ++
Sbjct: 10  KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67

Query: 84  LSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPV 139
           +  I Q          R K+ ++PR   +++HM M  I S   I  L   S NI +P   
Sbjct: 68  IKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPG-- 115

Query: 140 DADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
             +G+ RE+ +     +DL  +PGL FD+ G RLGRG G
Sbjct: 116 --EGDVREEALSTG-GLDLIFMPGLGFDKHGNRLGRGKG 151

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9D110|MTHFS_MOUSE 5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus GN=Mthfs PE=2 SV=2

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 84/158 (53%), Gaps = 19/158 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR+++++ L+++    R  +   + + V+    +++S+R+  ++S     EV+T  +
Sbjct: 10  KRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQD--EVETEVI 67

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLI---ANSMNILEPAPVD 140
           +  I          K  K  ++PR + +++HM M  ++S +++      S NI +P    
Sbjct: 68  IKDIF---------KQGKICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQPG--- 115

Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
            +G+ RE+ +     +DL  LPGL FD+ G RLGRG G
Sbjct: 116 -EGDVREEALSTG-GLDLIFLPGLGFDKDGNRLGRGKG 151

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis elegans GN=Y106G6E.4 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 23/159 (14%)

Query: 27  LRSQVRKTLKSMDPSLRSHEDN----AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSK 82
           ++S++R+ +K++   +   E      A+ + ++E+ WF+ S+RL  Y+S S   E+ T  
Sbjct: 7   VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG--EIQTDS 64

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI---SSIDDLIANSMNILEPAPV 139
           ++ + L++          K++++P+    ++ M M  +   ++ D+L +    I +P P 
Sbjct: 65  IIQKALEM---------GKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIRQPEP- 114

Query: 140 DADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                 +        P+DL L PG+AF   G R G G G
Sbjct: 115 ----KWKWQSYHETGPLDLILAPGVAFSPYGLRCGHGKG 149

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P40099|FTHC_YEAST 5-formyltetrahydrofolate cyclo-ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAU1 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 32/191 (16%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K++LR Q+++ + ++D  + + E + I + V       +S+R+  Y+S     EV T ++
Sbjct: 4   KQLLRRQIKRVINALDYDIIAAESHTISQAVRSLIASANSRRVACYMSMDK-GEVTTGEI 62

Query: 84  LSQILQIPNADGD-------TKTRKKLYVPRVEDKNSHM---RMFHISSIDDLIANS-MN 132
           +  + Q    DG        T T +  +    ED + H+   RM  +  + DL       
Sbjct: 63  IKNLFQ----DGQEVFLPRCTHTSESKHFKLREDHHPHLIFHRMSSLKMVRDLKPQGPYQ 118

Query: 133 ILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD-RSGRRLGRGGGSTKS-LQRKEI-- 188
           + EP P      E  D++      D+ L+PG+AFD ++G R+G G G      QR +I  
Sbjct: 119 LKEPEP----HIEESDIL------DVVLVPGVAFDIKTGARMGHGAGYYDDFFQRYKILH 168

Query: 189 -GGNPSLL-LC 197
            G  P L+ LC
Sbjct: 169 EGQKPLLVGLC 179

Utilizes 5-formyltetrahydrofolate (folinic acid) as substrate in an alternative way of folate biosynthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9P7W2|FTHC_SCHPO Probable 5-formyltetrahydrofolate cyclo-ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.08c PE=3 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 24/157 (15%)

Query: 28  RSQVRKTLKSMDPSLRSH----EDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           ++Q+R  L S    L  H    +  +I K V+E P +K  + +C Y++    +EV T  L
Sbjct: 5   KNQLRAILNSSLGKLADHIIDSQSISICKQVVELPEWKRCKNVCLYMNMPK-KEVRTRCL 63

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSH-MRMFHI-SSIDDLIANSMNILEPAPVDA 141
           +         D   K  K +++P+     SH M M+ +    + L  N   I EP     
Sbjct: 64  I---------DVAFKEGKNVFIPKC--IGSHVMEMYQVFEKTESLTINKWGIAEP----- 107

Query: 142 DGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
              E   +M      +L ++PG+AFD    RLG G G
Sbjct: 108 -NGESRKIMDDETDCELIIVPGVAFDEKLSRLGHGKG 143

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q89AD6|Y370_BUCBP Uncharacterized protein bbp_370 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=bbp_370 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 21/153 (13%)

Query: 28  RSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQI 87
           R   RK  K ++  +R     +I K +       S + +   I CS   E+DT  L+ ++
Sbjct: 10  RKYFRKLRKKINNKIREQLAISISKKIFYCNILDSVKNIA--IFCSFDGEIDTYPLILKL 67

Query: 88  LQIPNADGDTKTRKKLYVPRVEDKNSHMRMF--HISSIDDLIANSMNILEPAPVDADGNE 145
                     +    +Y+P +      +  F  ++ +   LI N  NILEP        +
Sbjct: 68  ---------WRQNYNVYLPIINYNYKKILGFMKYLPN-TSLIKNRFNILEPV------FD 111

Query: 146 REDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           R++ +Q+++ +D+  +P +AFD  G RLG GGG
Sbjct: 112 RKNFIQSDD-LDIMFVPLVAFDEFGYRLGMGGG 143

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

>sp|Q8K9E3|Y396_BUCAP Uncharacterized protein BUsg_396 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=BUsg_396 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 23/172 (13%)

Query: 22  QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTS 81
           Q ++ +RS +R    S+  + +  E N I +         +++ +  ++S     E++T 
Sbjct: 7   QNRKEIRSYIRIVRNSVTLTKKYDESNKIVRTAFNCNIIYNAKNIACFLSFDG--EINTY 64

Query: 82  KLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMF-HISSIDDLIANSMNILEPAPVD 140
            L+ ++             K +++P V    S    F   +    L  N  NIL+P    
Sbjct: 65  PLILKLWL---------NNKNVFLPIVSSSYSRKLFFVPFTCKSILYYNQYNILQPF--- 112

Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGST----KSLQRKEI 188
              N ++ +++++  +DL ++P +AFD  G RLG GGG      K+ +RK+ 
Sbjct: 113 --YNMKDIILESD--LDLIIVPLVAFDCRGVRLGMGGGFYDQFLKNWERKKF 160

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
255540841	292	5-formyltetrahydrofolate cyclo-ligase, p	0.778	0.602	0.727	3e-70
224121584	276	5-formyltetrahydrofolate cyclo-ligase [P	0.681	0.557	0.805	4e-67
449477615	337	PREDICTED: 5-formyltetrahydrofolate cycl	0.716	0.480	0.759	3e-66
449441041	337	PREDICTED: 5-formyltetrahydrofolate cycl	0.716	0.480	0.759	3e-66
79327754	214	5-formyltetrahydrofolate cycloligase [Ar	0.769	0.813	0.686	2e-65
297734059	242	unnamed protein product [Vitis vinifera]	0.676	0.632	0.771	1e-64
359491756	273	PREDICTED: 5-formyltetrahydrofolate cycl	0.676	0.560	0.771	1e-64
356508620	260	PREDICTED: 5-formyltetrahydrofolate cycl	0.690	0.6	0.766	4e-64
351720903	254	uncharacterized protein LOC100527426 [Gl	0.694	0.618	0.746	2e-63
217072924	241	unknown [Medicago truncatula]	0.659	0.618	0.753	4e-60

>gi|255540841|ref|XP_002511485.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis] gi|223550600|gb|EEF52087.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/176 (72%), Positives = 151/176 (85%)

Query: 11  EEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYI 70
           + +  + + IF+QKRILRS+VRK+LKSMDPSLRS EDNAIQ +VLEAPWFKSS+  CAYI
Sbjct: 41  QHQTANFDEIFKQKRILRSKVRKSLKSMDPSLRSEEDNAIQSLVLEAPWFKSSKTFCAYI 100

Query: 71  SCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANS 130
           SCSALREV+TS LL +IL+ P  DG  +T KKLYVPRVEDKNSHMRM +ISS+DDLIANS
Sbjct: 101 SCSALREVNTSVLLREILKNPEKDGCAQTPKKLYVPRVEDKNSHMRMLNISSMDDLIANS 160

Query: 131 MNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRK 186
           MNILEPAP+D  GN+REDV+QAN+PVDLFLLPGLAF+R+G+RLGRGGG   +  RK
Sbjct: 161 MNILEPAPIDGLGNKREDVLQANDPVDLFLLPGLAFERTGKRLGRGGGYYDTFLRK 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121584|ref|XP_002318620.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa] gi|222859293|gb|EEE96840.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa]

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 140/154 (90%)

Query: 16  DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSAL 75
           +L+ IF+QK++LRS+VRK+LKSMDPSLRS ED+AIQ +VLEAPWFKSSQRLCAYI+CSAL
Sbjct: 45  NLDGIFKQKQVLRSKVRKSLKSMDPSLRSQEDDAIQSLVLEAPWFKSSQRLCAYITCSAL 104

Query: 76  REVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
           REVDTSKLLSQILQ P  DG  +  KKLYVPRVEDKNSHMRM +ISS+DDLIANSM+ILE
Sbjct: 105 REVDTSKLLSQILQNPTKDGSVENAKKLYVPRVEDKNSHMRMLNISSMDDLIANSMDILE 164

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           PAPVD  GN REDVMQAN+PVDLFLLPGLAFD+S
Sbjct: 165 PAPVDQHGNAREDVMQANDPVDLFLLPGLAFDKS 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477615|ref|XP_004155072.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 141/166 (84%), Gaps = 4/166 (2%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSS 63
           +N+S  PE  E  L+ IF QKR+LRS VRK LK+MDPS RS EDN IQ IVLEAPWFKSS
Sbjct: 98  TNESIKPEN-EDQLKHIFDQKRVLRSSVRKALKAMDPSFRSQEDNVIQSIVLEAPWFKSS 156

Query: 64  QRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI 123
           QRLCAY+SCSALREVDTS+LLS+ILQ P  DG +K   K+YVPRVEDKNSHMRMF+IS +
Sbjct: 157 QRLCAYVSCSALREVDTSRLLSEILQHPPKDGHSK---KIYVPRVEDKNSHMRMFNISRM 213

Query: 124 DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           DDLIANSMNILEPAPVD DGNEREDVMQ  +P+DLFLLPGLAFD+S
Sbjct: 214 DDLIANSMNILEPAPVDGDGNEREDVMQTKDPIDLFLLPGLAFDKS 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441041|ref|XP_004138292.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 141/166 (84%), Gaps = 4/166 (2%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSS 63
           +N+S  PE  E  L+ IF QKR+LRS VRK LK+MDPS RS EDN IQ IVLEAPWFKSS
Sbjct: 98  TNESIKPEN-EDQLKHIFDQKRVLRSSVRKALKAMDPSFRSQEDNVIQSIVLEAPWFKSS 156

Query: 64  QRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI 123
           QRLCAY+SCSALREVDTS+LLS+ILQ P  DG +K   K+YVPRVEDKNSHMRMF+IS +
Sbjct: 157 QRLCAYVSCSALREVDTSRLLSEILQHPPKDGHSK---KIYVPRVEDKNSHMRMFNISRM 213

Query: 124 DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           DDLIANSMNILEPAPVD DGNEREDVMQ  +P+DLFLLPGLAFD+S
Sbjct: 214 DDLIANSMNILEPAPVDGDGNEREDVMQTKDPIDLFLLPGLAFDKS 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79327754|ref|NP_001031873.1| 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana] gi|332004462|gb|AED91845.1| 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/182 (68%), Positives = 151/182 (82%), Gaps = 8/182 (4%)

Query: 1   MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWF 60
           ++ S  S N EE    L+SIF+QKR++RS VRK+LK+MDPSLR+ +D AIQK VLEAPWF
Sbjct: 41  VAMSTTSKNQEE----LDSIFKQKRVVRSTVRKSLKAMDPSLRTQQDEAIQKTVLEAPWF 96

Query: 61  KSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI 120
           KS + LCAYISC +L EVDTSK+LS+ILQ P    D+ T+KKLYVP VEDKNS+MRM HI
Sbjct: 97  KSCKGLCAYISCKSLNEVDTSKILSEILQHP----DSNTQKKLYVPWVEDKNSNMRMLHI 152

Query: 121 SSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGST 180
           S ++DL+ANSMNILEPAPVDA GN+REDV+QA+EP+DLF+LPGLAFDR GRRLGRG  +T
Sbjct: 153 SHMEDLVANSMNILEPAPVDAQGNDREDVLQADEPIDLFILPGLAFDRCGRRLGRGATTT 212

Query: 181 KS 182
            S
Sbjct: 213 LS 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734059|emb|CBI15306.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/153 (77%), Positives = 136/153 (88%)

Query: 17  LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
           LE++F+QK+ILRS VRK LK MDPS RS EDNA+Q I+LEAPWF+SSQRLCAYISCS+LR
Sbjct: 13  LEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLR 72

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP 136
           EVDTSK+LS+ILQ P  DG T+  KKLYVPRVEDKNS+MRM +I+ +DDLI+NSMNILEP
Sbjct: 73  EVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEP 132

Query: 137 APVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           APVD DGNEREDVMQA +PVDL LLPGLAFD+S
Sbjct: 133 APVDGDGNEREDVMQATDPVDLLLLPGLAFDKS 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491756|ref|XP_002266146.2| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase [Vitis vinifera]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/153 (77%), Positives = 136/153 (88%)

Query: 17  LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
           LE++F+QK+ILRS VRK LK MDPS RS EDNA+Q I+LEAPWF+SSQRLCAYISCS+LR
Sbjct: 44  LEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLR 103

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP 136
           EVDTSK+LS+ILQ P  DG T+  KKLYVPRVEDKNS+MRM +I+ +DDLI+NSMNILEP
Sbjct: 104 EVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEP 163

Query: 137 APVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           APVD DGNEREDVMQA +PVDL LLPGLAFD+S
Sbjct: 164 APVDGDGNEREDVMQATDPVDLLLLPGLAFDKS 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508620|ref|XP_003523053.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Glycine max]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 140/163 (85%), Gaps = 7/163 (4%)

Query: 7   SSNPEEKEHD-LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQR 65
           S+N    +HD L++IF+ KR+LR+QVRKTLKS+ PSLRSH+DN +Q IVL APWFKSS+R
Sbjct: 23  STNTNTPKHDGLDAIFKHKRLLRTQVRKTLKSIQPSLRSHQDNTVQDIVLGAPWFKSSRR 82

Query: 66  LCAYISCSALREVDTSKLLSQILQIPNA-DGDTKTRKKLYVPRVEDKNSHMRMFHISSID 124
           LCAYISC+ALREVDT K+LSQILQ  NA DG     KKLYVPRVEDKNSHMRM HIS ID
Sbjct: 83  LCAYISCAALREVDTLKILSQILQHNNATDG-----KKLYVPRVEDKNSHMRMLHISGID 137

Query: 125 DLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
           DLIANSM+ILEPAPVD DGN REDVMQAN+PVDLFLLPGLAFD
Sbjct: 138 DLIANSMDILEPAPVDVDGNAREDVMQANDPVDLFLLPGLAFD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720903|ref|NP_001235912.1| uncharacterized protein LOC100527426 [Glycine max] gi|255632316|gb|ACU16516.1| unknown [Glycine max]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/162 (74%), Positives = 138/162 (85%), Gaps = 5/162 (3%)

Query: 7   SSNPEEKEHD-LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQR 65
           S+N    +HD +++IF+QKR LR+QVRKTLKS+DPSL+SH+DN +Q IVL APWF+SS+R
Sbjct: 17  STNTNTPKHDDIDAIFKQKRFLRTQVRKTLKSIDPSLKSHQDNTVQDIVLGAPWFRSSRR 76

Query: 66  LCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD 125
           LCAYISC+ALREVDTSK+LSQILQ       T   KKLYVPRVEDKNSHMRM HIS IDD
Sbjct: 77  LCAYISCAALREVDTSKILSQILQ----HNSTTDGKKLYVPRVEDKNSHMRMLHISRIDD 132

Query: 126 LIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
           LIANSM+ILEP PVDADGN REDVMQAN+PVDLF LPGLAFD
Sbjct: 133 LIANSMDILEPTPVDADGNAREDVMQANDPVDLFPLPGLAFD 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072924|gb|ACJ84822.1| unknown [Medicago truncatula]

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 135/154 (87%), Gaps = 5/154 (3%)

Query: 16  DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSAL 75
           +L++IF+QK+ LR+QVRKTLK++DPSLRS +D AIQ I++ APWFKSS+ LCAYISCSAL
Sbjct: 15  ELDAIFKQKKALRTQVRKTLKAIDPSLRSQQDKAIQDIIVGAPWFKSSRGLCAYISCSAL 74

Query: 76  REVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
           REVDTSKLLS ILQ P A GD    KKLYVPRVEDKNSHMRM +IS IDDL+ANSMNILE
Sbjct: 75  REVDTSKLLSHILQPPPA-GD----KKLYVPRVEDKNSHMRMLNISRIDDLVANSMNILE 129

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRS 169
           P PVDADGN R+DV+QAN+PVD+ LLPGLAFD+S
Sbjct: 130 PTPVDADGNARQDVLQANDPVDIMLLPGLAFDKS 163

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2179827	277	5-FCL "5-formyltetrahydrofolat	0.703	0.574	0.688	2e-56
UNIPROTKB|F1NWN8	201	MTHFS "Uncharacterized protein	0.570	0.641	0.272	7.4e-11
FB|FBgn0085453	201	CG34424 [Drosophila melanogast	0.566	0.636	0.291	2e-10
UNIPROTKB|P49914	203	MTHFS "5-formyltetrahydrofolat	0.584	0.650	0.254	2.6e-07
UNIPROTKB|E2RR20	203	MTHFS "Uncharacterized protein	0.588	0.655	0.25	7e-07
UNIPROTKB|P80405	201	MTHFS "5-formyltetrahydrofolat	0.566	0.636	0.265	8.8e-07
MGI|MGI:1340032	203	Mthfs "5, 10-methenyltetrahydr	0.566	0.630	0.251	3.5e-06
RGD|1306876	203	Mthfs "5,10-methenyltetrahydro	0.566	0.630	0.244	3.5e-06
WB|WBGene00013708	206	Y106G6E.4 [Caenorhabditis eleg	0.592	0.650	0.235	5.5e-05
UNIPROTKB|Q1RMT3	201	MTHFS "5,10-methenyltetrahydro	0.566	0.636	0.224	0.00068

TAIR|locus:2179827 5-FCL "5-formyltetrahydrofolate cycloligase" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 115/167 (68%), Positives = 140/167 (83%)

Query:     1 MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWF 60
             ++ S  S N EE    L+SIF+QKR++RS VRK+LK+MDPSLR+ +D AIQK VLEAPWF
Sbjct:    41 VAMSTTSKNQEE----LDSIFKQKRVVRSTVRKSLKAMDPSLRTQQDEAIQKTVLEAPWF 96

Query:    61 KSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI 120
             KS + LCAYISC +L EVDTSK+LS+ILQ P    D+ T+KKLYVP VEDKNS+MRM HI
Sbjct:    97 KSCKGLCAYISCKSLNEVDTSKILSEILQHP----DSNTQKKLYVPWVEDKNSNMRMLHI 152

Query:   121 SSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
             S ++DL+ANSMNILEPAPVDA GN+REDV+QA+EP+DLF+LPGLAFD
Sbjct:   153 SHMEDLVANSMNILEPAPVDAQGNDREDVLQADEPIDLFILPGLAFD 199

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;IGI;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

UNIPROTKB|F1NWN8 MTHFS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 40/147 (27%), Positives = 78/147 (53%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++R+ L+++  + +  +   + + V+    ++ S+R+  ++S     E+ T ++
Sbjct:    10 KRALRTELRQKLRALGAAEKQRQSRLLSRKVIGHSKYQESKRIAIFLSMPD--EIQTEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
             +  I          K  K+ ++PR +  ++HM M  +SS +D   L   S NIL+P+   
Sbjct:    68 IKDIF---------KQGKECFIPRYKPHSNHMDMLKLSSAEDISSLTLTSWNILQPSD-- 116

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
              D + RE+ + A   +DL  +PGL FD
Sbjct:   117 -DDSAREEAL-AGGGLDLIFMPGLGFD 141

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

FB|FBgn0085453 CG34424 [Drosophila melanogaster (taxid:7227)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 42/144 (29%), Positives = 74/144 (51%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             K  LR +++  LK +D    + +  A+   VL++  F+ +QR+  Y+S ++  E+DT+ L
Sbjct:    10 KVALRKRMKDALKGIDAEAIARQSQAVTAKVLQSEIFRQAQRVSIYLSTAS--ELDTTAL 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHM-RMFHISSIDDLIANSMNILEPAPVDAD 142
             LS++ ++          K ++VP  E     M R+  +   + L     NI +P   +A 
Sbjct:    68 LSEMFRL---------EKMVFVPTYEGSRMKMVRLRGMEEYESLPLTKWNIKQPDFKEA- 117

Query:   143 GNEREDVMQANEPVDLFLLPGLAF 166
                RED M     +DLF++PG+AF
Sbjct:   118 ---REDAMTNGHGIDLFIVPGVAF 138

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

UNIPROTKB|P49914 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 39/153 (25%), Positives = 77/153 (50%)

Query:    19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREV 78
             ++   KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E+
Sbjct:     5 AVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EI 62

Query:    79 DTSKLLSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
             +T +++  I Q          R K+ ++PR   +++HM M  I S ++   L   S NI 
Sbjct:    63 ETEEIIKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112

Query:   135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
             +P     +G+ RE+ +     +DL  +PGL FD
Sbjct:   113 QPG----EGDVREEALSTGG-LDLIFMPGLGFD 140

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0015942 "formate metabolic process" evidence=NAS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IDA;NAS

GO:0005829 "cytosol" evidence=NAS

GO:0046653 "tetrahydrofolate metabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E2RR20 MTHFS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 128 (50.1 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 38/152 (25%), Positives = 76/152 (50%)

Query:    19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREV 78
             ++   KR LR+++++ L++M    R  +   + + V+    ++ S+R+  ++S     E+
Sbjct:     6 AVSSAKRSLRAELKQRLRAMSAEERLRQSRLLAQKVIAHSQYQKSKRISIFLSMHD--EI 63

Query:    79 DTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISS---IDDLIANSMNILE 135
             +T +++  I Q     G T      ++PR + +++HM M  ++S   I  L   S NI +
Sbjct:    64 ETEEIIRDIFQ----QGKT-----CFIPRYQFRSNHMDMVKLASPEEISSLPKTSWNIHQ 114

Query:   136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFD 167
             P     +   RE+ +     +DL  +PGL FD
Sbjct:   115 PG----EDEVREEALSTGG-LDLIFMPGLGFD 141

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P80405 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Oryctolagus cuniculus (taxid:9986)]

 Score = 127 (49.8 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 39/147 (26%), Positives = 76/147 (51%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R      + + V+    ++ SQR+  ++S     E++T ++
Sbjct:    10 KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
             +  I Q     G     K  ++PR   +++HM M  ++S D++ +    S NI +P+  D
Sbjct:    68 IKDIFQ----QG-----KVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESD 118

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
                  RE+ + A   +DL  +PGL FD
Sbjct:   119 T----REEAL-ATGGLDLIFMPGLGFD 140

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISS

MGI|MGI:1340032 Mthfs "5, 10-methenyltetrahydrofolate synthetase" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 37/147 (25%), Positives = 76/147 (51%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R  +   + + V+    +++S+R+  ++S     EV+T  +
Sbjct:    10 KRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQD--EVETEVI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
             +  I          K  K  ++PR + +++HM M  ++S +++      S NI +P    
Sbjct:    68 IKDIF---------KQGKICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQPG--- 115

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
              +G+ RE+ +     +DL  LPGL FD
Sbjct:   116 -EGDVREEALSTGG-LDLIFLPGLGFD 140

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISO

RGD|1306876 Mthfs "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 36/147 (24%), Positives = 77/147 (52%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R  + + + + V+    +++S+R+  ++S     E++T ++
Sbjct:    10 KRGLRAELKQRLRALGAEERLRQSHLLTQKVIAHSQYQNSKRISIFLSMQD--EIETEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
             +  I          K  K  ++PR +  ++HM M  +++ ++   L   S NI +P    
Sbjct:    68 IKDIF---------KQGKICFIPRYQFHSNHMDMVRLTAPEEVALLPKTSWNIHQPG--- 115

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
              +G+ RE+ +     +DL  LPGL FD
Sbjct:   116 -EGDVREEALSTGG-LDLIFLPGLGFD 140

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISO

WB|WBGene00013708 Y106G6E.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 114 (45.2 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 36/153 (23%), Positives = 73/153 (47%)

Query:    17 LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
             + +I + K  LR  ++  L  +       +  A+ + ++E+ WF+ S+RL  Y+S S   
Sbjct:     1 MSAIKEVKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG-- 58

Query:    77 EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI---SSIDDLIANSMNI 133
             E+ T  ++ + L++    G     K++++P+    ++ M M  +   ++ D+L +    I
Sbjct:    59 EIQTDSIIQKALEM----G-----KEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGI 109

Query:   134 LEPAPVDADGNEREDVMQANEPVDLFLLPGLAF 166
              +P P       +        P+DL L PG+AF
Sbjct:   110 RQPEP-----KWKWQSYHETGPLDLILAPGVAF 137

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

UNIPROTKB|Q1RMT3 MTHFS "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" [Bos taurus (taxid:9913)]

 Score = 105 (42.0 bits), Expect = 0.00068, P = 0.00068
 Identities = 33/147 (22%), Positives = 74/147 (50%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R  + + + + V     ++ S+R+  ++S     E++T ++
Sbjct:    11 KRSLRAELKQRLRALSAEERLRQSHLLAQKVFTHNEYQKSKRVSIFLSMPD--EIETEEI 68

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
             +  I +     G T      ++PR + +++HM M  ++S +++      S NI +P    
Sbjct:    69 IKDIFR----QGKT-----CFIPRYQLQSNHMDMVKLASPEEIALLPRTSWNIQQPG--- 116

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFD 167
              +    E+ +     +DL  +PGL FD
Sbjct:   117 -EDEVLEEALSTGG-LDLIFVPGLGFD 141

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	5FCL	5-formyltetrahydrofolate cyclo-ligase (237 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	GART	hypothetical protein (215 aa)						•	•		0.915
	gw1.V.378.1	hypothetical protein (318 aa)						•			0.800
	NIT2	nitrilase 2 (EC-3.5.5.1) (266 aa)							•		0.700

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
PLN02812	211	PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo	4e-88
TIGR02727	179	TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofola	2e-27
pfam01812	182	pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolat	5e-22
COG0212	191	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-l	8e-22
PRK10333	182	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo	7e-05

>gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase

 Score =  258 bits (662), Expect = 4e-88
 Identities = 110/162 (67%), Positives = 131/162 (80%), Gaps = 9/162 (5%)

Query: 18  ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
           + I +QK+ LR +VR+ LK++ P  R+ ED AIQ  +LE PWFKSS+RLCAY+SC+ LRE
Sbjct: 1   DEIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLRE 60

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEP 136
           VDTSK+LS+ILQ P         K+LYVPRVEDKNS+MRM HI+ + DDL+ANSMNILEP
Sbjct: 61  VDTSKILSEILQNP--------DKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEP 112

Query: 137 APVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
            PVDADGN REDV+QA EP+DL LLPGLAFDRSGRRLGRGGG
Sbjct: 113 TPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRGGG 154

Length = 211

>gnl|CDD|233985 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase

 Score =  102 bits (256), Expect = 2e-27
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 21/157 (13%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR-EVDTSK 82
           K+ LR ++ +  K++  + R    +AI K +L    +K+++ +  Y+    LR EVDT  
Sbjct: 1   KKELRKKLLEARKALSSAERKAASSAIAKRLLALIEWKNAKTIALYLP---LRGEVDTRP 57

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD-LIANSMNILEPAPVDA 141
           L+ Q+L+           K++ +P+V+     M  F I S +  L      ILEP     
Sbjct: 58  LIEQLLKEG---------KRVALPKVDGDGKEMLFFRIWSPEQPLTKGPFGILEP---VG 105

Query: 142 DGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           D  E     +    +DL ++PG+AFDR G RLG GGG
Sbjct: 106 DLEEPVPPDE----IDLIIVPGVAFDRRGYRLGYGGG 138

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism [Central intermediary metabolism, One-carbon metabolism]. Length = 179

>gnl|CDD|216717 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase family

 Score = 88.6 bits (220), Expect = 5e-22
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 19/156 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K+ LR Q+    +++    R+    A+ + +      + ++R+  Y+S     E+DT +L
Sbjct: 1   KQELRKQLLAKRRALSEEERAAASRALHQKLPSFVGAQKAKRVALYVSVK--GEIDTREL 58

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHIS-SIDDLIANSMNILEPAPVDAD 142
           +  +L+           K + +PR    +  +           L +    + EP     +
Sbjct: 59  IELLLEE---------GKLVLLPRPRPDSGLVVRITPYYPETGLPSGPYGLPEPI----E 105

Query: 143 GNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
             +RE    A   +DL L+PG+AFDR G RLGRGGG
Sbjct: 106 EEQREL---ALNQIDLVLVPGVAFDRQGYRLGRGGG 138

5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase EC:6.3.3.2 catalyzes the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin. Length = 182

>gnl|CDD|223290 COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

 Score = 88.5 bits (220), Expect = 8e-22
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR  + +   ++ P  R   D  I K++      K ++ +  Y+  +   E+DT  L
Sbjct: 5   KSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPL 62

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
           + Q L+     G     K+L +P++ D       +    +  LI N   ILEP       
Sbjct: 63  IRQALR----RG-----KRLLLPKLRDYKLLFLRYIPDPLQPLIKNRFGILEP------- 106

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                       +DL L+P +AFD+ G RLG GGG
Sbjct: 107 -GEYGRKIPPPEIDLVLVPLVAFDKQGYRLGYGGG 140

Length = 191

>gnl|CDD|182385 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 17/103 (16%)

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMF-HISSIDDLIANSMNILE 135
           E+DT  L+ Q+ +           K++Y+P +   ++   +F +     +L+ N + I E
Sbjct: 46  ELDTQPLIEQLWR---------AGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHE 96

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           P  +D       DV+  +  +D+ + P +AFD  G+RLG GGG
Sbjct: 97  PK-LDV-----RDVLPLSR-LDVLITPLVAFDEYGQRLGMGGG 132

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PLN02812	211	5-formyltetrahydrofolate cyclo-ligase	100.0
PF01812	186	5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-lig	100.0
PRK10333	182	5-formyltetrahydrofolate cyclo-ligase family prote	100.0
TIGR02727	181	MTHFS_bact 5,10-methenyltetrahydrofolate synthetas	100.0
COG0212	191	5-formyltetrahydrofolate cyclo-ligase [Coenzyme me	100.0
KOG3093	200	consensus 5-formyltetrahydrofolate cyclo-ligase [C	100.0
KOG4410	396	consensus 5-formyltetrahydrofolate cyclo-ligase [C	99.74

>PLN02812 5-formyltetrahydrofolate cyclo-ligase

Probab=100.00  E-value=2.3e-55  Score=372.83  Aligned_cols=197  Identities=56%  Similarity=0.882  Sum_probs=169.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCC--CCChHHHHHHHHhCCCCCCC
Q 027202           19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR--EVDTSKLLSQILQIPNADGD   96 (226)
Q Consensus        19 ~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~--Evdt~~li~~~~~~~~~~~~   96 (226)
                      .+.+.|++||++++++|++++++++...|.+|+++|.+++.|+++++|++|+|++  +  ||||.+|++.+++       
T Consensus         2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~~~Evdt~~li~~~~~-------   72 (211)
T PLN02812          2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCA--KLREVDTSKILSEILQ-------   72 (211)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECC--CCCCcCHHHHHHHHHH-------
Confidence            4667899999999999999999999999999999999999999999999999998  6  9999999999998       


Q ss_pred             CCCC-cEEEEeeEeCCCCceEEEEeCCC-CccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccc
Q 027202           97 TKTR-KKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG  174 (226)
Q Consensus        97 ~~~g-k~v~lP~v~~~~~~m~f~~~~~~-~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG  174 (226)
                        .| |+|+||+|...+..|.|+.|++. ++|..|.|||+||.........+.+.+.....+|||||||||||++|+|||
T Consensus        73 --~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG  150 (211)
T PLN02812         73 --NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLG  150 (211)
T ss_pred             --cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCc
Confidence              89 99999999765456999999986 789999999999985421111000111134678999999999999999999


Q ss_pred             cCCChhhhhhhhhc----C--CCCccEEEEEecccccc--cCC-cccCccccEEEcCCccC
Q 027202          175 RGGGSTKSLQRKEI----G--GNPSLLLCHILCRSWMK--ESY-QLLQRTCQLMLLYPRLV  226 (226)
Q Consensus       175 ~GgGyYDR~L~~~~----~--~~~~~~igla~~~Q~v~--~ip-e~hD~~ld~iit~~~~~  226 (226)
                      ||||||||||++++    .  +..+.+|||||++|+++  .+| |+||+|||.|||+.+++
T Consensus       151 ~GgGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~~~~iP~e~hD~~ld~iiTe~~vi  211 (211)
T PLN02812        151 RGGGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILDEGSVPVDETDVLVDALVTPSGVI  211 (211)
T ss_pred             CCCchHHHHHHHhhhhhccccCCCceEEEEeeheeeECCCCCCCccccccCCEEEcCCcCC
Confidence            99999999999863    1  12366899999999999  999 99999999999999874

>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6

Probab=100.00  E-value=3.7e-54  Score=357.86  Aligned_cols=181  Identities=27%  Similarity=0.418  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 027202           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (226)
Q Consensus        24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v  103 (226)
                      |++||++++++|++++++++.+.|+.|+++|.+++.++++++|++|+|++  +|+||.+|++.+++         .||+|
T Consensus         1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~---------~gk~v   69 (186)
T PF01812_consen    1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK---------DGKRV   69 (186)
T ss_dssp             HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH---------TTCEE
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH---------cCCeE
Confidence            89999999999999999999999999999999999999999999999998  89999999999999         99999


Q ss_pred             EEeeEeCCC---CceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChh
Q 027202          104 YVPRVEDKN---SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGST  180 (226)
Q Consensus       104 ~lP~v~~~~---~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyY  180 (226)
                      ++|++..+.   ..|.|+.+.+.+++.+|.|||+||.....       .......+|+|||||||||++|+|||||||||
T Consensus        70 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~idlvlVP~lafd~~G~RLG~GgGyY  142 (186)
T PF01812_consen   70 YLPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESP-------PPDPPEEIDLVLVPGLAFDRNGNRLGYGGGYY  142 (186)
T ss_dssp             EEEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCS-------EEGGGGG-SEEEEE-SEEETTSBEE-SSSTHH
T ss_pred             ecceecccccccceeEEeecCCcccccccccCccCCccccc-------cccccccCCEEEeCcEEECCCCCeEecCCCHH
Confidence            999998875   35788888888999999999999986531       11122379999999999999999999999999


Q ss_pred             hhhhhhhcC-CCCccEEEEEecccccccCC-cccCccccEEEcC
Q 027202          181 KSLQRKEIG-GNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLY  222 (226)
Q Consensus       181 DR~L~~~~~-~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~  222 (226)
                      ||||+.++. ...+.+|||||++|+++.+| |+||++||+||||
T Consensus       143 DR~L~~~~~~~~~~~~igl~~~~q~~~~iP~e~hD~~ld~iiTe  186 (186)
T PF01812_consen  143 DRFLARLPPGRKKPLKIGLAFDFQIVDDIPVEPHDIPLDAIITE  186 (186)
T ss_dssp             HHHHHHHTS-SS--EEEEEE-GGGEES-----TTS-B-SEEEET
T ss_pred             HhHHHhhhcccCCCeEEEEeehhheeCCCCCCcccccCCEEEcC
Confidence            999998864 33578999999999999999 8999999999997

3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....

>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

Probab=100.00  E-value=1.4e-53  Score=354.33  Aligned_cols=176  Identities=17%  Similarity=0.275  Sum_probs=157.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeC
Q 027202           31 VRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVED  110 (226)
Q Consensus        31 ~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v~lP~v~~  110 (226)
                      ++++|++++++++...|++|+++|.+++.|+++++|++|+|++  +||||.+|++.+++         .||+|+||+|.+
T Consensus         2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk~v~lP~v~~   70 (182)
T PRK10333          2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR---------AGKRVYLPVLHP   70 (182)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEEEEeEEec
Confidence            5788999999999999999999999999999999999999999  89999999999999         899999999975


Q ss_pred             C-CCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhhhhhhhcC
Q 027202          111 K-NSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEIG  189 (226)
Q Consensus       111 ~-~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~~  189 (226)
                      . ...|.|+.|++.++|.+|+|||+||.....      . ......+|+|||||||||++|+|||||||||||||+.++.
T Consensus        71 ~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~------~-~~~~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~  143 (182)
T PRK10333         71 FSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR------D-VLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQH  143 (182)
T ss_pred             CCCCEEEEEECCCCCccccCCCCCCCCCcccc------c-cCCcccCCEEEeCceEECCCCCcccCCcchHHHHHHHhcc
Confidence            4 246999999998999999999999975321      1 1235678999999999999999999999999999998753


Q ss_pred             CCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202          190 GNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL  225 (226)
Q Consensus       190 ~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~  225 (226)
                       ..+.+||+||++|+++++| |+||+|||.|||++++
T Consensus       144 -~~~~~igla~~~Q~~~~ip~e~hD~~ld~iiTe~~~  179 (182)
T PRK10333        144 -YKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKV  179 (182)
T ss_pred             -cCCcEEEEeeeeEEeCCcCCCcccCcCCEEEeCCeE
Confidence             2356899999999999999 9999999999999885

>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase

Probab=100.00  E-value=1.2e-52  Score=348.16  Aligned_cols=179  Identities=25%  Similarity=0.376  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 027202           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (226)
Q Consensus        24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v  103 (226)
                      |++||++++++|++++.+++.+.|++|+++|.+++.++++++|++|+|++  +|+||.+|++.+++         .||+|
T Consensus         1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~---------~~k~v   69 (181)
T TIGR02727         1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK---------EGKRV   69 (181)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEE
Confidence            78999999999999999999999999999999999999999999999999  89999999999998         89999


Q ss_pred             EEeeEeCCC-CceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhh
Q 027202          104 YVPRVEDKN-SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKS  182 (226)
Q Consensus       104 ~lP~v~~~~-~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR  182 (226)
                      +||++...+ ..|.|..|++.++|..|.|||+||..+..      . ......+|+|||||||||++|+|||||||||||
T Consensus        70 ~lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~------~-~~~~~~idlvivP~lafD~~G~RLG~GgGyYDR  142 (181)
T TIGR02727        70 ALPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDST------E-PVDPDEIDLIIVPGVAFDRRGYRLGYGGGYYDR  142 (181)
T ss_pred             EEEEEecCCCceeEEEecCCCCccccCCCCCCCCCCccc------C-cCCcccCCEEEeCceEEcCCCccccCCcchHHH
Confidence            999997653 23677778877789999999999985310      0 124567999999999999999999999999999


Q ss_pred             hhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcC
Q 027202          183 LQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLY  222 (226)
Q Consensus       183 ~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~  222 (226)
                      ||+.++.  .+.+|||||++|+++.+| |+||++||+|||+
T Consensus       143 ~L~~~~~--~~~~igv~~~~q~~~~lp~e~~Di~ld~iiTe  181 (181)
T TIGR02727       143 FLANLKG--KTVVVGLAFDFQLVDELPREPHDVPVDAIITE  181 (181)
T ss_pred             HHHhccc--CCCEEEEEecceeeCccCCCccCccCCEEeCC
Confidence            9998753  345899999999999999 9999999999996

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.

>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

Probab=100.00  E-value=2.7e-49  Score=330.97  Aligned_cols=183  Identities=23%  Similarity=0.343  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 027202           21 FQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR  100 (226)
Q Consensus        21 ~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~g  100 (226)
                      .+.|++||++++++|.++++..+...+..+++++..++.+.++++|++|+|++  +|+||.++++.+++         +|
T Consensus         2 ~~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~---------~g   70 (191)
T COG0212           2 MATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR---------RG   70 (191)
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH---------cC
Confidence            35799999999999999999999999999999999999999999999999999  89999999999999         99


Q ss_pred             cEEEEeeEeCCCCceEEEEeCCC--CccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCC
Q 027202          101 KKLYVPRVEDKNSHMRMFHISSI--DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (226)
Q Consensus       101 k~v~lP~v~~~~~~m~f~~~~~~--~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgG  178 (226)
                      |+|++|++.+  ..+.|..|.+.  ..+..+.|||.||.....      .+  .+..+|+||||+||||++|+|||||||
T Consensus        71 k~l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~~------~~--~~~~iDlvlvP~Vafd~~G~RLG~GgG  140 (191)
T COG0212          71 KRLLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYGR------KI--PPPEIDLVLVPLVAFDKQGYRLGYGGG  140 (191)
T ss_pred             CEEEEeEEEc--CcceeEEecCCCCcccccccccccCCCccCC------cc--CCCcCCEEEeCceeECCCCccccCCCc
Confidence            9999999986  35788888887  888999999999986431      11  126799999999999999999999999


Q ss_pred             hhhhhhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202          179 STKSLQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL  225 (226)
Q Consensus       179 yYDR~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~  225 (226)
                      ||||||+... ..++.+||+||+||+++.+| |+||+|||.|+|++++
T Consensus       141 yYDR~la~~~-~~~~~~ig~~~~~Q~v~~lP~e~hDv~ld~ivt~~~~  187 (191)
T COG0212         141 YYDRYLANLR-GRKTPTVGIAYDCQLVDHLPREPHDVPLDAIVTEEGV  187 (191)
T ss_pred             hHHHHHHhhc-cCCCCEEEEEEeeeeeccCCCCcccCcccEEEeCCce
Confidence            9999999885 34688999999999999998 9999999999999986

>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]

Probab=100.00  E-value=3.9e-49  Score=320.78  Aligned_cols=192  Identities=32%  Similarity=0.567  Sum_probs=171.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCC
Q 027202           18 ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDT   97 (226)
Q Consensus        18 ~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~   97 (226)
                      +.++..|+.||+.++..+++|+++.+..+|++|+++++++++|+++++|++|+||.+ +||+|..||+.+++        
T Consensus         2 ~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq--------   72 (200)
T KOG3093|consen    2 DAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ--------   72 (200)
T ss_pred             chHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh--------
Confidence            567889999999999999999999999999999999999999999999999999995 59999999999999        


Q ss_pred             CCCcEEEEeeEeCCCCceEEEEeCCCCc---cccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccc
Q 027202           98 KTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG  174 (226)
Q Consensus        98 ~~gk~v~lP~v~~~~~~m~f~~~~~~~~---l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG  174 (226)
                       .||.||+|+|......|.+.++...++   +..+.|||++|.+..    .+++.......+|||||||||||+.|.|||
T Consensus        73 -~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~~----~re~~~~t~~~lDLiivPGvAFd~~g~RlG  147 (200)
T KOG3093|consen   73 -DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPGG----PREDALETGHPLDLIIVPGVAFDRKGARLG  147 (200)
T ss_pred             -cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCCC----chhhhccCCCcceEEEecccccchhhhhcc
Confidence             999999999977667899999987654   456899999998753    344443334469999999999999999999


Q ss_pred             cCCChhhhhhhhhc---CCCCccEEEEEecccccccCC-cccCccccEEEcCC
Q 027202          175 RGGGSTKSLQRKEI---GGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYP  223 (226)
Q Consensus       175 ~GgGyYDR~L~~~~---~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~  223 (226)
                      +|+||||+||.++.   ++.++.+||+|+.+|++.+|| ++||+.+|.|||+.
T Consensus       148 hGkGYYD~flkry~~~~~~~kp~~vgL~l~EQI~~~IPv~~~Dv~lD~vvt~~  200 (200)
T KOG3093|consen  148 HGKGYYDDFLKRYQIHAPEQKPLLVGLCLKEQILSEIPVEEHDVKLDAVVTED  200 (200)
T ss_pred             CCcchHHHHHHHHHHhccccCchhhhhhhhHhhcccCCCCccceeeeEeecCC
Confidence            99999999998754   356789999999999999999 99999999999983

>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]

Probab=99.74  E-value=1.1e-17  Score=144.91  Aligned_cols=183  Identities=16%  Similarity=0.185  Sum_probs=132.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHc----CCHHHH------HHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHH
Q 027202           16 DLESIFQQKRILRSQVRKTLKS----MDPSLR------SHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLS   85 (226)
Q Consensus        16 ~~~~~~~~K~~LR~~~~~~R~~----l~~~~~------~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~   85 (226)
                      +-+++...|..+|.+++....+    +++.-.      ...+.++|+.+.++..|+.|+.|-+-.      .-.+..+..
T Consensus        26 ~~qd~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnp------D~pl~~~r~   99 (396)
T KOG4410|consen   26 TTQDIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNP------DRPLHEFRE   99 (396)
T ss_pred             CCCCcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCC------CchHHHHHH
Confidence            3356788899999999988754    333221      245778889999999999999988664      234777777


Q ss_pred             HHHhCCCCCCCCCCCcEEEEeeEeCCCCceEEEEeCCCCc----ccc---CCCcc---cCCCCCCCCCCchhhhccCCCC
Q 027202           86 QILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD----LIA---NSMNI---LEPAPVDADGNEREDVMQANEP  155 (226)
Q Consensus        86 ~~~~~~~~~~~~~~gk~v~lP~v~~~~~~m~f~~~~~~~~----l~~---g~~gI---~EP~~~~~~~~~~~~~~~~~~~  155 (226)
                      .++.         ..|++++|...-..+  .|..+++..+    ..+   ..-|+   ..+..           +...-.
T Consensus       100 L~L~---------~~Ksll~PspRlrtg--lf~kv~~~~~ate~i~~~c~tsqgv~ky~~~IG-----------LDs~lk  157 (396)
T KOG4410|consen  100 LALL---------ADKSLLLPSPRLRTG--LFLKVDVLADATEEIKKECLTSQGVQKYRSEIG-----------LDSGLK  157 (396)
T ss_pred             HHhh---------cccceecCCchhhcc--eeeeeccCCCCcHHHHHHHHhhhhHHHhCcccc-----------cccCce
Confidence            8887         789999998754432  3555554311    100   11121   12221           112346


Q ss_pred             ccEEEEecceecCCCCccccCCChhhhhhhhhc----CCCCccEEEEEecccccccCC----cccCccccEEEcCCccC
Q 027202          156 VDLFLLPGLAFDRSGRRLGRGGGSTKSLQRKEI----GGNPSLLLCHILCRSWMKESY----QLLQRTCQLMLLYPRLV  226 (226)
Q Consensus       156 iDlviVPglAFD~~G~RLG~GgGyYDR~L~~~~----~~~~~~~igla~~~Q~v~~ip----e~hD~~ld~iit~~~~~  226 (226)
                      +|||+|..||+++.|+|||.|-||-|--...+.    -.+.+++|.++||||+||+||    +.||+|+|+|+||||++
T Consensus       158 vDlvViGSVavs~~G~RiGkGeGfAdLeygmli~mGAi~~~TpvVTiVHDcQvVD~iP~el~~~hD~pVDiI~TPTrvI  236 (396)
T KOG4410|consen  158 VDLVVIGSVAVSREGYRIGKGEGFADLEYGMLIEMGAITPKTPVVTIVHDCQVVDSIPPELFQKHDTPVDIIATPTRVI  236 (396)
T ss_pred             EEEEEEeeEEecccceeeccCCchhhhhhHHHHHhcccCCCCceEEEEecceeeccCCHHHHhhcCCCccEEeccceEE
Confidence            899999999999999999999999997765432    134678899999999999998    37999999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
3hxt_A	203	Structure Of Human Mthfs Length = 203		5e-08
1sou_A	194	Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltet		6e-04

>pdb|3HXT|A Chain A, Structure Of Human Mthfs Length = 203

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 21/148 (14%)
Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E++T ++
Sbjct: 10  KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67
Query: 84  LSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPV 139
           +  I Q          R K+ ++PR   +++HM M  I S   I  L   S NI +P   
Sbjct: 68  IKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQP--- 114
Query: 140 DADGNEREDVMQANEPVDLFLLPGLAFD 167
             +G+ RE+ +     +DL  +PGL FD
Sbjct: 115 -GEGDVREEALSTG-GLDLIFMPGLGFD 140

>pdb|1SOU|A Chain A, Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltetrahydrofolate Synthetase: Northeast Structural Genomics Consortium Target Qr46 Length = 194

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 26  ILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE----APWFKSSQRLCAYISCSALREVDTS 81
           +L+S++RK +     +L   E   + + V+      P FK S+++  Y  C    EVD +
Sbjct: 1   MLKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALY--CPIKGEVDLT 58
Query: 82  KLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDA 141
            L  ++L+           K+L +P+VE   + + ++ + S   L   +  I+EP  V+ 
Sbjct: 59  PLFPEVLK----------EKELILPKVE--GNEISLYRVHSPACLGVGAFGIMEP--VEG 104
Query: 142 DGNEREDVMQANEPVDLFLLPGLAFD 167
           +    EDV       D   +PG+AFD
Sbjct: 105 ERVNPEDV-------DFIAVPGVAFD 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	3e-41
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	5e-41
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	9e-40
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	1e-32
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	2e-27
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	2e-21

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Length = 203

 Score =  138 bits (350), Expect = 3e-41
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 19/164 (11%)

Query: 18  ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
            ++   KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E
Sbjct: 4   AAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DE 61

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
           ++T +++  I Q     G     K  ++PR   +++HM M  I S ++   L   S NI 
Sbjct: 62  IETEEIIKDIFQ----RG-----KICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112

Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           +P      G+ RE+ +      DL  +PGL FD+ G RLGRG G
Sbjct: 113 QPGE----GDVREEALSTGGL-DLIFMPGLGFDKHGNRLGRGKG 151

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis} Length = 200

 Score =  137 bits (348), Expect = 5e-41
 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 15  HDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSA 74
           H    + ++K  LR Q+ + + S+     +     I   + E   +  ++ +   +S   
Sbjct: 4   HHHHHVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME- 62

Query: 75  LREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNIL 134
             EV+T  ++ +           K  K++ VP+   +   M    IS+ D L    MN+ 
Sbjct: 63  -NEVNTYPIIEKAW---------KEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLR 112

Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
           EP P         + + A+E  DL ++PG+A+   G R+G GGG
Sbjct: 113 EPIP------ALTEEVNADEI-DLQIVPGVAYTERGERIGYGGG 149

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Length = 187

 Score =  134 bits (339), Expect = 9e-40
 Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +  + L ++       +   + K +   P ++++  +   IS     E+ T  +
Sbjct: 2   KSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPV 59

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
           + Q  +    +G     K++ +P+       M+     + D L      +LEP       
Sbjct: 60  IEQAWE----EG-----KQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVI----- 105

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
            E+   +  ++  DL ++PG+ FD +G R+G GGG
Sbjct: 106 -EKTKEVNPSQI-DLMIVPGVCFDVNGFRVGFGGG 138

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Length = 194

 Score =  116 bits (292), Expect = 1e-32
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 23/155 (14%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +V     ++    R      +   +   P FK S+++  Y       EVD + L
Sbjct: 3   KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
             ++L+           K+L +P+VE     + ++ + S   L   +  I+EP       
Sbjct: 61  FPEVLK----------EKELILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVE----- 103

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
               + +   + VD   +PG+AFD  G RLG G G
Sbjct: 104 ---GERVNPED-VDFIAVPGVAFDLEGYRLGFGKG 134

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6 Length = 184

 Score =  101 bits (255), Expect = 2e-27
 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 32/155 (20%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR + R   + +D    S    A+   +L     +  + +  Y       E++   L
Sbjct: 3   KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPLP--HELNLLPL 57

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
           +                 + Y+P+V  K       H      L      +LEP       
Sbjct: 58  MEAY------------PARYYLPKVAGKG---LTVH--PFGPLAPGPFGLLEPTT----- 95

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                        DL ++PGLAFDR G RLG G G
Sbjct: 96  ----PPEDPRVL-DLVVVPGLAFDREGYRLGHGQG 125

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A* Length = 189

 Score = 86.6 bits (215), Expect = 2e-21
 Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 38/161 (23%)

Query: 19  SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAP-WFKSSQRLCAYISCSALRE 77
                K  LR Q+ +   ++    +SH D  I + ++         + +  Y       E
Sbjct: 23  QGHMDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NE 80

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPA 137
           V       + L+          + +   P+V   ++ +           I    N  EP 
Sbjct: 81  VTFVDFFFEFLK--------INQIRAVYPKVI-SDTEI---------IFIDQETNTFEP- 121

Query: 138 PVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                          N+  D FL+P + F++   RLG G G
Sbjct: 122 ---------------NQI-DCFLIPLVGFNKDNYRLGFGKG 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	100.0
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	100.0
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	100.0
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	100.0
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	100.0
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	100.0

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A

Probab=100.00  E-value=6.1e-58  Score=385.16  Aligned_cols=194  Identities=24%  Similarity=0.397  Sum_probs=167.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCC
Q 027202           16 DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADG   95 (226)
Q Consensus        16 ~~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~   95 (226)
                      +|++++..|++||++++++|++++++++..+|++|+++|++++.|+++++|++|+|++  +||||.+|++.+++      
T Consensus         2 ~~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~------   73 (203)
T 3hy3_A            2 AAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ------   73 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH------
T ss_pred             chhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH------
Confidence            4778899999999999999999999999999999999999999999999999999999  79999999999999      


Q ss_pred             CCCCCcEEEEeeEeCCCCceEEEEeCCCC---ccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCc
Q 027202           96 DTKTRKKLYVPRVEDKNSHMRMFHISSID---DLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRR  172 (226)
Q Consensus        96 ~~~~gk~v~lP~v~~~~~~m~f~~~~~~~---~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~R  172 (226)
                         .||+|+||+|...+..|.|+.|.+.+   .|.+|.|||+||.....    ..+. .....+|||||||||||++|+|
T Consensus        74 ---~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~~----~~~~-~~~~~~DlvlVP~vaFD~~G~R  145 (203)
T 3hy3_A           74 ---RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDV----REEA-LSTGGLDLIFMPGLGFDKHGNR  145 (203)
T ss_dssp             ---TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTCC----CCBG-GGTTCCSEEEECCSEECTTCCE
T ss_pred             ---CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCccc----cccc-cCccCCCEEEeCCeEECCCCce
Confidence               99999999997655579999998763   57899999999975321    0111 1345799999999999999999


Q ss_pred             cccCCChhhhhhhhhcC--CCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202          173 LGRGGGSTKSLQRKEIG--GNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL  225 (226)
Q Consensus       173 LG~GgGyYDR~L~~~~~--~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~  225 (226)
                      ||||||||||||+.++.  +..+.+|||||++|+++.+| |+||+|||+|||+.+.
T Consensus       146 LG~GgGyYDR~L~~~~~~~~~~~~~igla~~~Q~~~~lP~e~hDi~ld~iiTe~~~  201 (203)
T 3hy3_A          146 LGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLYEDSS  201 (203)
T ss_dssp             ECSSSCHHHHHHHHHTTTCSSCCEEEEECCGGGBCSCCCCC--CCCCSEEECC---
T ss_pred             ecCCCchHHHHHHHhhhhcCCCCeEEEEecHHhccCCCCCCcccccCCEEEeCCCc
Confidence            99999999999997642  23577899999999999999 9999999999999873

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}

Probab=100.00  E-value=1e-56  Score=377.15  Aligned_cols=185  Identities=19%  Similarity=0.298  Sum_probs=168.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCC
Q 027202           19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTK   98 (226)
Q Consensus        19 ~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~   98 (226)
                      .+.+.|++||++++++|++++++++..+|.+|+++|.+++.|+++++|++|+|++  +|+||.+|++.+++         
T Consensus         8 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------   76 (200)
T 2jcb_A            8 HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME--NEVNTYPIIEKAWK---------   76 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTSHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH---------
T ss_pred             hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------
Confidence            5789999999999999999999999999999999999999999999999999999  89999999999999         


Q ss_pred             CCcEEEEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCC
Q 027202           99 TRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (226)
Q Consensus        99 ~gk~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgG  178 (226)
                      .||+|+||++...++.|.|+.|++.++|.+|.|||+||.....      . ......+|+|||||||||++|+|||||||
T Consensus        77 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~------~-~~~~~~iDlvlVP~vAfD~~G~RLG~GgG  149 (200)
T 2jcb_A           77 EGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPALT------E-EVNADEIDLQIVPGVAYTERGERIGYGGG  149 (200)
T ss_dssp             TTCEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGGC------E-ECCGGGCSEEECCCSEECTTSCEECSSSC
T ss_pred             CCCEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCccc------c-cCCccCCCEEEECCeEECCCCCeeccCCc
Confidence            9999999999765557999999998899999999999974210      0 12345789999999999999999999999


Q ss_pred             hhhhhhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202          179 STKSLQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL  225 (226)
Q Consensus       179 yYDR~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~  225 (226)
                      ||||||+.++    ..+||+||++|+++.+| |+||+|||+|||++++
T Consensus       150 yYDR~La~~~----~~~igla~~~Q~v~~lP~e~hDi~ld~iiTe~~~  193 (200)
T 2jcb_A          150 YYDRYLVHYK----GKTLSLAYSFQMVEHIPVEPFDKNVEKIITEKGT  193 (200)
T ss_dssp             HHHHHTTTCC----SEEEEECCGGGBCSCCCCCTTCCCCSEEEETTEE
T ss_pred             hHHHHHhhcC----CCEEEEEehhhccCCCCCCccCCcCCEEEECCeE
Confidence            9999999764    26899999999999999 9999999999999875

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}

Probab=100.00  E-value=2.6e-56  Score=370.83  Aligned_cols=181  Identities=18%  Similarity=0.269  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 027202           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (226)
Q Consensus        23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~  102 (226)
                      .|++||++++++|++++++++...|.+|+++|.+++.|+++++|++|+|++  +|+||.+|++.+++         .||+
T Consensus         1 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~gk~   69 (187)
T 1ydm_A            1 MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPVIEQAWE---------EGKQ   69 (187)
T ss_dssp             ---CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHTCSEEECCCCCT--TSCCCHHHHHHHHH---------TTCE
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHhhhCCEEEEECCCC--CCCCHHHHHHHHHH---------CCCE
Confidence            389999999999999999999999999999999999999999999999999  89999999999999         9999


Q ss_pred             EEEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhh
Q 027202          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKS  182 (226)
Q Consensus       103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR  182 (226)
                      |+||++...++.|.|+.|++.++|.+|.|||+||.....      . ......+|+|||||||||++|+|||||||||||
T Consensus        70 v~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~~------~-~~~~~~iDlvivP~vafD~~G~RLG~GgGyYDR  142 (187)
T 1ydm_A           70 VCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEKT------K-EVNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDR  142 (187)
T ss_dssp             EEEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--CC------C-CCCGGGCCEEECCCSEEETTSCEECCSCCSTTT
T ss_pred             EEEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCccc------c-cCCccCCCEEEeCCeEECCCCCcccCCccHHHH
Confidence            999998643457999999998899999999999975310      0 113457899999999999999999999999999


Q ss_pred             hhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202          183 LQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL  225 (226)
Q Consensus       183 ~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~  225 (226)
                      ||+.++    ..+||+||++|+++.+| |+||+|||+|||+.++
T Consensus       143 ~L~~~~----~~~igla~~~Q~~~~lP~e~hD~~ld~iiTe~~~  182 (187)
T 1ydm_A          143 YLSEYE----GKTVSLLLECQLFAHVPRLPHDIPVHKLITEDRI  182 (187)
T ss_dssp             GGGTCC----SEEEEECCGGGEESCCCCCTTCCCCSEEECSSCE
T ss_pred             HHHhCC----CCEEEEEeHHHhcCCCCCccccCcCCEEEECCcE
Confidence            999764    26899999999999999 9999999999999986

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6

Probab=100.00  E-value=9.1e-55  Score=363.63  Aligned_cols=175  Identities=23%  Similarity=0.354  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 027202           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (226)
Q Consensus        24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v  103 (226)
                      |++||++++++|++++++++...|.+|+++|.+++.|+++++|++|+|++  +|+||.+|++.+++         . |+|
T Consensus         3 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~-k~v   70 (194)
T 1sou_A            3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-KEL   70 (194)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-SEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------c-CCE
Confidence            99999999999999999999999999999999999999999999999999  89999999999998         8 999


Q ss_pred             EEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhhh
Q 027202          104 YVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSL  183 (226)
Q Consensus       104 ~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR~  183 (226)
                      +||++ .+ +.|.|+.|++.++|.+|.|||+||.. .       . ......+|+|||||||||++|+||||||||||||
T Consensus        71 ~lP~~-~~-~~m~f~~~~~~~~L~~g~~GI~EP~~-~-------~-~~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~  139 (194)
T 1sou_A           71 ILPKV-EG-NEISLYRVHSPACLGVGAFGIMEPVE-G-------E-RVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRL  139 (194)
T ss_dssp             EEEEE-SS-SSEEEEEESSSCCCEECSSSCEECCS-S-------E-EECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHH
T ss_pred             EEEEe-cC-CeeEEEEECCCCccCCCCCCCCCCCc-c-------c-cCCCCCCCEEEECCeEECCCCceeccCCcHHHHH
Confidence            99998 33 46999999998999999999999974 1       0 0133578999999999999999999999999999


Q ss_pred             hhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202          184 QRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL  225 (226)
Q Consensus       184 L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~  225 (226)
                      |+.++    +.+||+||++|+++.+| |+||+|||+|||+.++
T Consensus       140 L~~~~----~~~igla~~~Q~v~~lP~e~hDi~ld~iiTe~~~  178 (194)
T 1sou_A          140 LKRVK----GLKVGVAYSFQVFERLPRDAWDIPVDVLVTEKNV  178 (194)
T ss_dssp             HHHCC----SEEEEECCGGGBCSCCCCCSCCCCCSEEECSSCE
T ss_pred             HHhcC----CCEEEEEchHhccCCCCCCcccccCCEEEECCeE
Confidence            99864    36899999999999999 9999999999999875

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6

Probab=100.00  E-value=4e-52  Score=345.02  Aligned_cols=166  Identities=20%  Similarity=0.296  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 027202           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (226)
Q Consensus        24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~v  103 (226)
                      |++||++++++|++++.++   .|.+|+++|.+++.|+++++|++|+|++  +|+||.+|++  ++         . |+|
T Consensus         3 K~~lR~~~~~~r~~l~~~~---~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~--~~---------~-k~v   65 (184)
T 1wkc_A            3 KAELRRRARAAWRRLDLKA---LSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME--AY---------P-ARY   65 (184)
T ss_dssp             HHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH--HS---------C-CEE
T ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhChhhhcCCEEEEECCCC--CCcCHHHHHH--hh---------c-CCE
Confidence            9999999999999999887   7889999999999999999999999999  8999999999  76         8 999


Q ss_pred             EEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhhh
Q 027202          104 YVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKSL  183 (226)
Q Consensus       104 ~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR~  183 (226)
                      +||+|..+  .|.|+.|+   +|.+|.|||+|| ...       .  .....+|+|||||||||++|+||||||||||||
T Consensus        66 ~lP~~~~~--~m~f~~~~---~L~~~~~gi~EP-~~~-------~--~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~  130 (184)
T 1wkc_A           66 YLPKVAGK--GLTVHPFG---PLAPGPFGLLEP-TTP-------P--EDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRF  130 (184)
T ss_dssp             EEEEEETT--EEEEEESC---CBC-------CB-CSC-------C--BCGGGCSEEEECCSEEETTSCEECCSSCHHHHH
T ss_pred             EEeEEeCC--ceEEEEec---ccCCCCCCCCCC-CCc-------c--CCCCCCCEEEECcEEECCCCCEeeCCccHHHHH
Confidence            99998644  69999998   899999999999 321       0  123578999999999999999999999999999


Q ss_pred             hhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202          184 QRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL  225 (226)
Q Consensus       184 L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~  225 (226)
                      |+.+.    +.+||+||++|+++.+| |+||+|||+|||++++
T Consensus       131 L~~~~----~~~igl~~~~Q~~~~lp~e~hD~~ld~iiT~~~~  169 (184)
T 1wkc_A          131 LKEVR----AATVGVVPQALLFPALPRDPWDVPVDHLATEAGV  169 (184)
T ss_dssp             HHHCC----SEEEEECCGGGEESCCCCCTTCCCCSEEEETTEE
T ss_pred             HHhcC----CCEEEEEchhhccCCCCCccccCccCEEEECCEE
Confidence            99763    46899999999999999 9999999999999875

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*

Probab=100.00  E-value=2.8e-50  Score=335.18  Aligned_cols=161  Identities=16%  Similarity=0.186  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCcc-CCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 027202           22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR  100 (226)
Q Consensus        22 ~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~-~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~g  100 (226)
                      +.|++||++++++|++++++++...|.+|+++|.+++.|+ ++++|++|+|++  +|+||.+|++.+++         .|
T Consensus        26 m~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~g   94 (189)
T 1sbq_A           26 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------IN   94 (189)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HT
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHhHhhCCEEEEECCCC--CCCCHHHHHHHHHH---------cC
Confidence            3599999999999999999999999999999999999999 999999999999  89999999999998         89


Q ss_pred             c-EEEEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCCh
Q 027202          101 K-KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGS  179 (226)
Q Consensus       101 k-~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGy  179 (226)
                      | +|+||+|... +.|.|+.|++.            |.              ....+|||||||||||++|+||||||||
T Consensus        95 k~~v~lP~~~~~-~~m~f~~~~~~------------~~--------------~~~~iDlvlVP~vAfD~~G~RLG~GgGy  147 (189)
T 1sbq_A           95 QIRAVYPKVISD-TEIIFIDQETN------------TF--------------EPNQIDCFLIPLVGFNKDNYRLGFGKGY  147 (189)
T ss_dssp             TCEEEEEEECSS-SCEEEECTTCC------------EE--------------CGGGCCEEEEECSEECTTCCEECCSSCH
T ss_pred             CCeEEEeEEccC-CceEEEEeCCC------------CC--------------CcccCCEEEECceEECCCCCEeecCCch
Confidence            9 9999999644 46999998764            11              1136899999999999999999999999


Q ss_pred             hhhhhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCC
Q 027202          180 TKSLQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYP  223 (226)
Q Consensus       180 YDR~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~  223 (226)
                      |||||+.++.  .+.+||+||++|+++ +| |+||+|||+|||+.
T Consensus       148 YDR~La~~~~--~~~~igla~~~Q~v~-lP~e~hDiplD~IiTe~  189 (189)
T 1sbq_A          148 YDRYLMQLTR--QQPKIGIAYSFQKGD-FLADPWDVQLDLIINDE  189 (189)
T ss_dssp             HHHHGGGCCS--CCCEEEEECGGGBCC-CCCCTTSCCCSEEEECC
T ss_pred             HHHHHHhcCC--CCCEEEEechHheeC-CCCCcccCcCCEEEcCC
Confidence            9999998642  367899999999999 99 99999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1wkca_	175	c.124.1.6 (A:) Hypothetical protein TTHA1611 {Ther	2e-05
d1sbqa_	164	c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synth	6e-05

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 32/155 (20%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR + R   + +D    S    A+   +L     +  + +  Y              
Sbjct: 3   KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPL----------- 48

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
                     + +     + Y  R        +   +     L      +LEP     D 
Sbjct: 49  --------PHELNLLPLMEAYPARYYLPKVAGKGLTVHPFGPLAPGPFGLLEPTTPPEDP 100

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                       +DL ++PGLAFDR G RLG G G
Sbjct: 101 RV----------LDLVVVPGLAFDREGYRLGHGQG 125

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]} Length = 164

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

 Score = 39.8 bits (92), Expect = 6e-05
 Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 38/156 (24%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE-APWFKSSQRLCAYISCSALREVDTSK 82
           K  LR Q+ +   ++    +SH D  I + ++         + +  Y       EV    
Sbjct: 3   KNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVD 60

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDAD 142
              + L         K  +   V      ++ +      +                    
Sbjct: 61  FFFEFL---------KINQIRAVYPKVISDTEIIFIDQETN------------------- 92

Query: 143 GNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG 178
                        +D FL+P + F++   RLG G G
Sbjct: 93  -------TFEPNQIDCFLIPLVGFNKDNYRLGFGKG 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1soua_	194	Hypothetical protein aq_1731 {Aquifex aeolicus [Ta	100.0
d1wkca_	175	Hypothetical protein TTHA1611 {Thermus thermophilu	100.0
d1sbqa_	164	5,10-methenyltetrahydrofolate synthetase homolog M	100.0

>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein aq 1731
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=1.1e-54  Score=361.05  Aligned_cols=176  Identities=23%  Similarity=0.350  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 027202           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (226)
Q Consensus        23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~  102 (226)
                      .|++||++++++|++++++++...|..|+++|.+++.|+++++|++|+|++  +||||.+|++.+++          +|+
T Consensus         2 ~K~~lRk~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~~~~I~~Y~p~~--~Evdt~~li~~l~~----------~k~   69 (194)
T d1soua_           2 LKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK----------EKE   69 (194)
T ss_dssp             CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH----------HSE
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHHhhcCCEEEEEeccc--ccCChHHHHHHHhh----------ccc
Confidence            499999999999999999999999999999999999999999999999999  89999999999986          478


Q ss_pred             EEEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhh
Q 027202          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKS  182 (226)
Q Consensus       103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR  182 (226)
                      |+||++.++  .|.|+.|.+.++|..|.|||+||....       .  ..+..+|+|||||||||++|+|||||||||||
T Consensus        70 v~lP~i~~~--~m~~~~~~~~~~l~~~~~gI~EP~~~~-------~--~~~~~iDlilVP~lafD~~G~RlG~G~GyYDR  138 (194)
T d1soua_          70 LILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVEGE-------R--VNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDR  138 (194)
T ss_dssp             EEEEEESSS--SEEEEEESSSCCCEECSSSCEECCSSE-------E--ECGGGCSEEEECCSCBCSSSCBCCSCCSSHHH
T ss_pred             ccccccchh--ceeeeccCCCcccccccccccCCCccc-------c--ccccccceehhhHHHHhhcCCccccCCEeHHH
Confidence            999999754  599999999899999999999997531       1  24467899999999999999999999999999


Q ss_pred             hhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202          183 LQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL  225 (226)
Q Consensus       183 ~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~  225 (226)
                      ||+..+    +.+|||||++|+++.+| |+||+|||+||||.++
T Consensus       139 ~L~~~~----~~~igl~~~~Q~~~~ip~e~hD~~ld~iiTe~~i  178 (194)
T d1soua_         139 LLKRVK----GLKVGVAYSFQVFERLPRDAWDIPVDVLVTEKNV  178 (194)
T ss_dssp             HHHHCC----SEEEEECCGGGBCSCCCCCSCCCCCSEEECSSCE
T ss_pred             hhhccC----CCEEEEEecceecCCCCCCCcCeECCEEEEccce
Confidence            999864    57899999999999999 8999999999999986

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.7e-51  Score=336.59  Aligned_cols=167  Identities=20%  Similarity=0.293  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccCCCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 027202           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (226)
Q Consensus        23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~gk~  102 (226)
                      .|++||++++++|++++.+   +.|++|+++|+++..++.+++|++|+|++  +||||.++++.            .||+
T Consensus         2 ~K~~lRk~~r~~r~~l~~~---~~s~~i~~~l~~~~~~~~~~~I~~Y~p~~--~Evdt~~li~~------------~~k~   64 (175)
T d1wkca_           2 TKAELRRRARAAWRRLDLK---ALSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLMEA------------YPAR   64 (175)
T ss_dssp             CHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHHH------------SCCE
T ss_pred             CHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhcCCCEEEEEEeEC--CccCcchhhhc------------ccce
Confidence            4999999999999999864   45788999999999899999999999999  89999999874            4689


Q ss_pred             EEEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChhhh
Q 027202          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGSTKS  182 (226)
Q Consensus       103 v~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyYDR  182 (226)
                      |+||++.++  .|.|+.|   ++|++|.|||+||....          .....+|+|||||||||++|+|||||||||||
T Consensus        65 v~lP~i~~~--~l~~~~~---~~l~~~~~gI~EP~~~~----------~~~~~~DliivP~vafD~~G~RlG~G~GyYDR  129 (175)
T d1wkca_          65 YYLPKVAGK--GLTVHPF---GPLAPGPFGLLEPTTPP----------EDPRVLDLVVVPGLAFDREGYRLGHGQGFYDR  129 (175)
T ss_dssp             EEEEEEETT--EEEEEES---CCBC-------CBCSCC----------BCGGGCSEEEECCSEEETTSCEECCSSCHHHH
T ss_pred             eeeeccccc--ceeecch---hhcchhhhhcccccccc----------cccccccEEEeeehheeecCcccccCcchHHH
Confidence            999999865  5888877   46999999999997532          12356899999999999999999999999999


Q ss_pred             hhhhhcCCCCccEEEEEecccccccCC-cccCccccEEEcCCcc
Q 027202          183 LQRKEIGGNPSLLLCHILCRSWMKESY-QLLQRTCQLMLLYPRL  225 (226)
Q Consensus       183 ~L~~~~~~~~~~~igla~~~Q~v~~ip-e~hD~~ld~iit~~~~  225 (226)
                      ||+..+    +.+||+||++|+++.+| |+||+|||+||||.++
T Consensus       130 ~L~~~~----~~~igl~~~~q~~~~ip~e~hDi~ld~iiTe~gi  169 (175)
T d1wkca_         130 FLKEVR----AATVGVVPQALLFPALPRDPWDVPVDHLATEAGV  169 (175)
T ss_dssp             HHHHCC----SEEEEECCGGGEESCCCCCTTCCCCSEEEETTEE
T ss_pred             HHhhcC----CCEEEEEehhheeCCCCCCcccccCCEEEeCccc
Confidence            999863    57899999999999999 9999999999999986

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=100.00  E-value=1.4e-48  Score=315.96  Aligned_cols=160  Identities=18%  Similarity=0.209  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCcCccC-CCEEEEEecCCCCCCCChHHHHHHHHhCCCCCCCCCCC-
Q 027202           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKS-SQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR-  100 (226)
Q Consensus        23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~-a~~I~~Y~~~~~~~Evdt~~li~~~~~~~~~~~~~~~g-  100 (226)
                      .|++||++++++|++++++++.+.|..|+++|.++..+.. +++|++|+|++  +||||.+++..+++         .+ 
T Consensus         2 ~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~~~~~I~~Y~p~~--~Evd~~~l~~~~l~---------~~~   70 (164)
T d1sbqa_           2 DKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------INQ   70 (164)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhhcCEEEEEeccC--CcccchHHHHHHHH---------cCC
Confidence            5999999999999999999999999999999988765554 58999999998  89999999988876         44 


Q ss_pred             cEEEEeeEeCCCCceEEEEeCCCCccccCCCcccCCCCCCCCCCchhhhccCCCCccEEEEecceecCCCCccccCCChh
Q 027202          101 KKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGST  180 (226)
Q Consensus       101 k~v~lP~v~~~~~~m~f~~~~~~~~l~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlviVPglAFD~~G~RLG~GgGyY  180 (226)
                      +++++|++..+. .|.|..+         .+|+.||.                 .+|+|||||||||++|+|||||||||
T Consensus        71 ~~~~~P~i~~~~-~~~~~~~---------~~~~~eP~-----------------~iDliivP~lafD~~G~RLGyGgGyY  123 (164)
T d1sbqa_          71 IRAVYPKVISDT-EIIFIDQ---------ETNTFEPN-----------------QIDCFLIPLVGFNKDNYRLGFGKGYY  123 (164)
T ss_dssp             CEEEEEEECSSS-CEEEECT---------TCCEECGG-----------------GCCEEEEECSEECTTCCEECCSSCHH
T ss_pred             eEEEEeeccCcc-cceeccc---------cccccCCc-----------------ccCEEEeeeheeeeecCccccccChH
Confidence            589999997663 5777643         46788873                 47999999999999999999999999


Q ss_pred             hhhhhhhcCCCCccEEEEEecccccccCCcccCccccEEEcC
Q 027202          181 KSLQRKEIGGNPSLLLCHILCRSWMKESYQLLQRTCQLMLLY  222 (226)
Q Consensus       181 DR~L~~~~~~~~~~~igla~~~Q~v~~ipe~hD~~ld~iit~  222 (226)
                      ||||++...  ++.+|||||++|+++.+||+||+|||+||||
T Consensus       124 DR~L~~~~~--~~~~igla~~~Q~~~~~~e~hDi~ld~iiTe  163 (164)
T d1sbqa_         124 DRYLMQLTR--QQPKIGIAYSFQKGDFLADPWDVQLDLIIND  163 (164)
T ss_dssp             HHHGGGCCS--CCCEEEEECGGGBCCCCCCTTSCCCSEEEEC
T ss_pred             HHHHHhcCC--CCCEEEEEehhhccCCCCCcccccCCEEeCC
Confidence            999998642  4678999999999987789999999999997