Citrus Sinensis ID: 027207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEccHHHHHHcHHHHHHHHccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHcccccHHccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccEEEEEccccccccccccEEEEEEcc
Coil and Loop (DISEMBL)
MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKrykaldidKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKlnnatlfeeagesnllldhkhitlefasfpdgKEAVAKAANLLFMKYVKlggsgkiqeekIFTEAHMSEALRavgckgpepdlllvygpvrchlgfpawriryteiv
Flexible Loop (DISEMBL)
MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRchlgfpawriryteiv
Low Complexity Region (SEG)
MDFRDTMQKVYSWACQignlglwiiwlliHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV
Disordered region (IsUnstruct)
*******QKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTE**
Disordered Region (DISOPRED)
*********VYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILK*********LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFE*********DHKHITLEFASFPDGKEAVAKAANLLFM***************IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV
Disordered Region (DISEMBL)
********KVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV
Disordered Region (DISPRO)
*DFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q96E22	293	Nogo-B receptor OS=Homo s	yes	no	0.654	0.505	0.261	2e-10
Q6DHR8	274	Nogo-B receptor OS=Danio	yes	no	0.632	0.521	0.261	1e-07
Q99LJ8	297	Nogo-B receptor OS=Mus mu	yes	no	0.707	0.538	0.255	3e-07
Q12063	375	Probable undecaprenyl pyr	yes	no	0.579	0.349	0.263	1e-05
Q9Y7K8	258	Probable undecaprenyl pyr	yes	no	0.734	0.643	0.239	0.0001

>sp|Q96E22|NGBR_HUMAN Nogo-B receptor OS=Homo sapiens GN=NUS1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 20/168 (11%)

Query: 72  IVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGK----------LN 121
           ++ E E+      +  L+ W + +G+ ++ +YD +GI K++   ++ +          L+
Sbjct: 104 VITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQQQELLGLD 163

Query: 122 NATLFEEAGESNLLLD---HKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178
            +    E   SN   D   + H+ ++  S  DGK  + +AA      + +L    + +  
Sbjct: 164 CSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIVRAAQ----DFCQLVAQKQKRPT 219

Query: 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
            +  +  ++  L + GC  P+PDL+L +GPV   LGF  W IR TEIV
Sbjct: 220 DLDVDT-LASLLSSNGC--PDPDLVLKFGPVDSTLGFLPWHIRLTEIV 264

Acts as a specific receptor for the N-terminus of Nogo-B, a neural and cardiovascular regulator. Able to regulate vascular remodeling and angiogenesis. Its similarity with UPP synthase proteins suggests that it may act as a scaffold for the binding of isoprenyl lipids and/or prenylated proteins.
Homo sapiens (taxid: 9606)

>sp|Q6DHR8|NGBR_DANRE Nogo-B receptor OS=Danio rerio GN=nus1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 25/168 (14%)

Query: 76  SEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILK-----------KSKESILGKLNNAT 124
           +EE  H   +  L+ W + +G+ +V +YD +G+ K           K ++ +LG  ++  
Sbjct: 86  TEEEIHYTDIANLVVWCMAVGISYVSVYDNQGVFKRNNSRLMEEILKQQQELLGMGSSKY 145

Query: 125 LFEEAGESNLLLDHKHIT----LEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
             E         +H+ ++    ++  S  DG+ ++ +AA  L  + V+       Q+EK 
Sbjct: 146 SVEILKNGTNKQEHQVLSCQSMVKVLSPDDGRLSIVQAAQQL-CRAVE-------QKEKT 197

Query: 181 FTEAHMS--EALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
             + ++S  ++L       P+PDL+L +G V+  LGF  W IR TEI+
Sbjct: 198 SKDINVSVLDSLLKESKNIPDPDLVLKFGTVQSTLGFLPWHIRLTEII 245

Acts as a specific receptor for the N-terminus of Nogo-B, a neural and cardiovascular regulator.

Danio rerio (taxid: 7955)

>sp|Q99LJ8|NGBR_MOUSE Nogo-B receptor OS=Mus musculus GN=Nus1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 28/188 (14%)

Query: 58  RYKALDIDKLRYLAI-----VIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKS 112
           R++A D+  L+ L +     V E  +      +  L+ W + +G+ ++ +YD +GI K++
Sbjct: 90  RWRA-DVRSLQKLPVHMGLLVTEEVQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRN 148

Query: 113 KESILGKL----------NNATLFEEAGESNLLLDHK---HITLEFASFPDGKEAVAKAA 159
              ++ ++          + +    E   SN   D        ++  S  DGK  + +AA
Sbjct: 149 NSRLMDEILKQQQELLGQDCSKYSAEFANSNDKDDQDLNCPSAVKVLSPEDGKADIVRAA 208

Query: 160 NLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKG-PEPDLLLVYGPVRCHLGFPAW 218
              F + V        Q+++  T+  +      +   G P+PDL+L +GPV   LGF  W
Sbjct: 209 QD-FCQLVA-------QQQRKPTDLDVDLLGSLLSSHGFPDPDLVLKFGPVDSTLGFLPW 260

Query: 219 RIRYTEIV 226
           +IR TEIV
Sbjct: 261 QIRLTEIV 268

Acts as a specific receptor for the N-terminus of Nogo-B, a neural and cardiovascular regulator. Able to regulate vascular remodeling and angiogenesis. Its similarity with UPP synthase proteins suggests that it may act as a scaffold for the binding of isoprenyl lipids and/or prenylated proteins.

Mus musculus (taxid: 10090)

>sp|Q12063|UPPS_YEAST Probable undecaprenyl pyrophosphate synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUS1 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 40/171 (23%)

Query: 87  QLLQWLVDIGVKHVCLYDAEGILKKS------------------------------KESI 116
           +++ W V  G+KH+ LYD +GIL+++                                 I
Sbjct: 181 EIVCWTVSAGIKHLMLYDYDGILQRNVPELRMEIHSNLAKYFGPAHVPNYAVKIPHSNKI 240

Query: 117 LGKLNNATLFEEAG---ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSG 173
              L+      + G   E+N   D   I +   S  DG+E +      +     +L    
Sbjct: 241 FYNLDGIETETDVGNEIEANQEKDKIAIEISLLSNRDGRETIVDLTKTM----AELCAVN 296

Query: 174 KIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTE 224
           ++    I  +   SE  + VG   PEPDLLL +GP     GFP W IR TE
Sbjct: 297 ELSVSDITMDLVDSELKQLVG---PEPDLLLYFGPSLDLQGFPPWHIRLTE 344

Generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

>sp|Q9Y7K8|UPPS_SCHPO Probable undecaprenyl pyrophosphate synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nus1 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 26/192 (13%)

Query: 52  SSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVI----QLLQWLVDIGVKHVCLYDAEG 107
           S  +++R       K +++A++IE  E   I  +I    +L  W V   ++ + +Y+ +G
Sbjct: 45  SRDLIRRDTKKLKKKPKHIAVIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIYERKG 104

Query: 108 ILKKSKESILGKLNNATLFEEAGESNLL-------LDHKH------ITLEFASFPDGKEA 154
            LK+S E++   + +   F   G+   +        D K+      + +   +  DG++A
Sbjct: 105 FLKQSPEAVEKAIYSHLPFYLGGDKCTVHVTNPCSPDEKNQNDCVDLKVHLIAKEDGRDA 164

Query: 155 VAK-AANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHL 213
           +      L  +   K+  S ++  E I  E   S          PEPDLL+++ P+    
Sbjct: 165 IIDLTRGLADLCTKKVISSTQVTLELIDKELKESVI--------PEPDLLIIFAPLLKLQ 216

Query: 214 GFPAWRIRYTEI 225
           GFP W++R  EI
Sbjct: 217 GFPPWQLRLCEI 228

Generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
224077818	254	predicted protein [Populus trichocarpa]	1.0	0.889	0.694	3e-87
359475282	255	PREDICTED: nogo-B receptor-like isoform	1.0	0.886	0.672	2e-84
255556087	243	conserved hypothetical protein [Ricinus	0.938	0.872	0.661	5e-76
363814545	254	uncharacterized protein LOC100796301 [Gl	0.982	0.874	0.572	1e-64
357481047	287	Nogo-B receptor [Medicago truncatula] gi	0.977	0.770	0.541	5e-62
356538453	249	PREDICTED: nogo-B receptor-like [Glycine	0.924	0.839	0.570	5e-59
449460714	262	PREDICTED: nogo-B receptor-like [Cucumis	0.920	0.793	0.561	2e-58
357481057	263	Nogo-B receptor [Medicago truncatula] gi	0.907	0.779	0.530	5e-57
297849548	414	predicted protein [Arabidopsis lyrata su	0.995	0.543	0.513	7e-57
4835781	417	F25C20.9 [Arabidopsis thaliana]	0.995	0.539	0.504	6e-56

>gi|224077818|ref|XP_002305421.1| predicted protein [Populus trichocarpa] gi|222848385|gb|EEE85932.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/226 (69%), Positives = 182/226 (80%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDF+D +Q+V     QIGN GL ++W  +H  V  WY  + +A  IESYLISSG+LKRY+
Sbjct: 1   MDFKDEVQRVKFGINQIGNFGLRLVWHSVHLLVRFWYLGVGVANVIESYLISSGLLKRYR 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           ++D+ KLRYLAIVIES++A  I  VIQLLQWL  IGVKH+CLYD EG+LKKSKESIL KL
Sbjct: 61  SIDVGKLRYLAIVIESDDACRISKVIQLLQWLQAIGVKHLCLYDTEGVLKKSKESILAKL 120

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
            NATLFEEA E + LLD KH+TLEFAS  DGKEAVAK  N+LFMKY K+  SG  Q+E+I
Sbjct: 121 KNATLFEEADERDSLLDQKHMTLEFASISDGKEAVAKGGNVLFMKYSKVANSGAEQKEQI 180

Query: 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
           FTEA+M+EALRAVGC GPEPDLLLVYGP RCHLGFPAWRIRYTEIV
Sbjct: 181 FTEANMTEALRAVGCGGPEPDLLLVYGPARCHLGFPAWRIRYTEIV 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475282|ref|XP_003631634.1| PREDICTED: nogo-B receptor-like isoform 1 [Vitis vinifera] gi|359475284|ref|XP_003631635.1| PREDICTED: nogo-B receptor-like isoform 2 [Vitis vinifera] gi|297741434|emb|CBI32565.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/226 (67%), Positives = 179/226 (79%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDF D +QKVY W   IG+LGL ++W  +HF V +W+ A   A  +ES  ISSG+LKRY+
Sbjct: 1   MDFGDEVQKVYCWISHIGSLGLKVLWHFLHFIVSVWFLARQAAYVLESCFISSGLLKRYE 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           AL++  LRYLAIVIESEEA+ IP VI+LL WL  IGVKHVCLYD EG+LKKSKE+IL KL
Sbjct: 61  ALNLGNLRYLAIVIESEEAHQIPKVIELLNWLATIGVKHVCLYDNEGVLKKSKEAILEKL 120

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
            +ATLFE   E+NLLLD +HITLEFAS  DGK AV KAAN+LFMKY+K   SG    E I
Sbjct: 121 TDATLFEGVDENNLLLDQEHITLEFASISDGKGAVTKAANILFMKYLKSADSGGSSAESI 180

Query: 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
           FTE HM+EAL+AVGC+GP+PDLLL+YGP RCHLGFPAWRIRYTEI+
Sbjct: 181 FTEPHMAEALKAVGCRGPDPDLLLIYGPARCHLGFPAWRIRYTEII 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556087|ref|XP_002519078.1| conserved hypothetical protein [Ricinus communis] gi|223541741|gb|EEF43289.1| conserved hypothetical protein [Ricinus communis]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 141/213 (66%), Positives = 167/213 (78%), Gaps = 1/213 (0%)

Query: 14  ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIV 73
           + QIG+LGL ++W  +H  V LWY    IA   ESYLIS+G+L RYK LD+ KLRYLAIV
Sbjct: 5   SVQIGDLGLRLLWHFVHLLVSLWYLGAGIAQVTESYLISNGLLNRYKTLDVGKLRYLAIV 64

Query: 74  IESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESN 133
           +ESE+AY I  V+QLLQWL  IGVKH+CLYD+EG+LKKSK+ I+ +L NA   EEA E +
Sbjct: 65  VESEDAYQISEVLQLLQWLEAIGVKHLCLYDSEGVLKKSKKFIIERLPNAIQLEEAVEKD 124

Query: 134 LLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAV 193
           L LDHKH+TLEFAS  DGKEA+AKAANLLFM Y+K      I +E++ TEAHM EALR +
Sbjct: 125 LPLDHKHMTLEFASVSDGKEAIAKAANLLFMNYMK-SAKTNIGQEEVITEAHMDEALRTL 183

Query: 194 GCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
           G KG +PDLLLVYGPVRCHLGFPAWRIRYTEIV
Sbjct: 184 GYKGTDPDLLLVYGPVRCHLGFPAWRIRYTEIV 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814545|ref|NP_001242452.1| uncharacterized protein LOC100796301 [Glycine max] gi|255645054|gb|ACU23026.1| unknown [Glycine max]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 160/229 (69%), Gaps = 7/229 (3%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDFRD   K       IGNLGL ++W  +   +  WYF   +    ESY IS G+LK+YK
Sbjct: 1   MDFRDLAHKFSRCIVTIGNLGLQLLWYFLRIILSAWYFISVVGNLFESYFISCGVLKKYK 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           +L   K+RYLAIVIESEEAY I  V++LLQWL  IGVK+VCLYD  G+LKKSKE+I  +L
Sbjct: 61  SLHSGKVRYLAIVIESEEAYQISRVVKLLQWLDIIGVKNVCLYDMNGVLKKSKETIFKEL 120

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVK---LGGSGKIQE 177
            NA   EE  E   L D  H+TLEF S+ DGKEAVAKAANL+F++++K   LGG    + 
Sbjct: 121 KNAKSIEEVNEVVALHDPDHMTLEFLSYADGKEAVAKAANLIFVEHLKRHELGG----EL 176

Query: 178 EKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
           + I  E  ++EAL+ VG KGPEPDLLLVYGPVR HLGFPAWR+RYTEI+
Sbjct: 177 DLILLEPQLNEALQIVGSKGPEPDLLLVYGPVRSHLGFPAWRLRYTEII 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481047|ref|XP_003610809.1| Nogo-B receptor [Medicago truncatula] gi|355512144|gb|AES93767.1| Nogo-B receptor [Medicago truncatula]

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/229 (54%), Positives = 157/229 (68%), Gaps = 8/229 (3%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDFRD    +Y     I NLGL ++W  +   V  WY+   +A   ESY IS G+ K+YK
Sbjct: 1   MDFRDVAHNLYHSILAIRNLGLQLLWYFLQIIVSAWYYISVVANLFESYFISYGVFKKYK 60

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           +L I KLRYLAIVIESE+A+    V+QLLQWL  +G+K+VCLYD  G+LKKSKE+I   +
Sbjct: 61  SLPIAKLRYLAIVIESEDAHQTSKVVQLLQWLDSLGIKNVCLYDMNGVLKKSKEAIFHTM 120

Query: 121 NNATLFEEAGESNLLLDH--KHITLEFASFPDGKEAVAKAANLLFMKYVKLGG-SGKIQE 177
            NA   EE  ++  + DH   H+TLEF S+ DGKEAV KAANL+F++  K     G++  
Sbjct: 121 KNAKSIEEVNKA--VTDHVPDHMTLEFVSYVDGKEAVTKAANLIFVESSKRHNLDGELDY 178

Query: 178 EKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
           +    E  +++AL+ VGC GPEPDLLLVYGPVRCHLGFPAWRIRYTEIV
Sbjct: 179 Q---LEPRLNQALQIVGCIGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 224

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538453|ref|XP_003537718.1| PREDICTED: nogo-B receptor-like [Glycine max]

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 146/212 (68%), Gaps = 3/212 (1%)

Query: 15  CQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVI 74
            Q+GNLGL + W  +   V  WYF   +    ESY IS   LK+YK+L   K+RYLAIVI
Sbjct: 12  VQVGNLGLQLPWYFLQIIVSAWYFISVVGNLFESYFIS---LKKYKSLHSGKVRYLAIVI 68

Query: 75  ESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNL 134
           ESEEAY I  V++L QWL  IGVK+VCLYD  G+LKKSKE++  KL NA   EE  E   
Sbjct: 69  ESEEAYQISKVVKLSQWLDSIGVKNVCLYDMNGVLKKSKETMFQKLKNAKSIEEVSEVVT 128

Query: 135 LLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVG 194
           L    H+TLEF S+ DGKEAVAKAANL+F++  K    G   + +I  E  M++AL+ VG
Sbjct: 129 LHAPDHMTLEFLSYLDGKEAVAKAANLIFVENSKRHNLGGELDLQILLEPQMNKALQIVG 188

Query: 195 CKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
            KGPEPDLLLVYGPVR HLGFPAWR+RYTEI+
Sbjct: 189 SKGPEPDLLLVYGPVRSHLGFPAWRLRYTEII 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460714|ref|XP_004148090.1| PREDICTED: nogo-B receptor-like [Cucumis sativus] gi|449483980|ref|XP_004156749.1| PREDICTED: nogo-B receptor-like [Cucumis sativus]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 119/212 (56%), Positives = 157/212 (74%), Gaps = 4/212 (1%)

Query: 16  QIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVIE 75
           +IG LGL +IW  +HF V  +YF + IA  +ESYLIS G   +YK L+ID+++YLAIV+E
Sbjct: 25  KIGLLGLQLIWHFLHFIVSAFYFVVGIATTLESYLISWGFPCKYKHLNIDRVQYLAIVVE 84

Query: 76  SEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLL 135
           S+EAY+   +I+LL+WLV +G++ VCLYDAEG+LK+SKE IL K+ NA+ F+   E  L 
Sbjct: 85  SDEAYNTLKMIELLEWLVSLGIRSVCLYDAEGVLKQSKEIILKKVKNASEFQGIDEP-LQ 143

Query: 136 LDHKHITLEFASFPDGKEAVAKAANLLFM-KYVKLGGSGKIQEEKIFTEAHMSEALRAVG 194
           L+ K ITLEF S  DGKEA+A+AAN L   K+ K   SG    ++  +E+ M+EAL+AVG
Sbjct: 144 LNKKGITLEFISASDGKEAIARAANFLLQNKWRKTNMSG--DHKRCLSESQMTEALKAVG 201

Query: 195 CKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
           C G +PDL+LVYGP RCH GFPAWRIRYTEI+
Sbjct: 202 CGGLDPDLILVYGPTRCHFGFPAWRIRYTEIL 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481057|ref|XP_003610814.1| Nogo-B receptor [Medicago truncatula] gi|355512149|gb|AES93772.1| Nogo-B receptor [Medicago truncatula]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 121/228 (53%), Positives = 152/228 (66%), Gaps = 23/228 (10%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MDFRD     Y +   IGNL L +          LWYF          Y IS  + K+YK
Sbjct: 1   MDFRDIAHNFYHFILAIGNLVLQL----------LWYFL---------YFISYRVFKQYK 41

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           ++ I KL+YLAIVIESE+A+    V+QLLQWL  +G+K+VCLYD  G+LKKSKE+I  K+
Sbjct: 42  SIPIAKLQYLAIVIESEDAHQTSKVVQLLQWLDSLGIKNVCLYDMNGVLKKSKEAIFHKM 101

Query: 121 NNATLFEEAGESNLLLDH--KHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178
            NA   EE  E+  + DH   H+TLEF S+ DGKEAVAKAANL+F++ +K    G   + 
Sbjct: 102 KNAKSIEEVNEA--VTDHVPYHMTLEFVSYVDGKEAVAKAANLIFVENLKRHNLGGELDY 159

Query: 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
           +   E H+++AL+ VGCKGPEPDLLLVYGPVR HLGFPAWRI+YTEIV
Sbjct: 160 QALLEPHLNQALQIVGCKGPEPDLLLVYGPVRSHLGFPAWRIQYTEIV 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849548|ref|XP_002892655.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338497|gb|EFH68914.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 152/226 (67%), Gaps = 1/226 (0%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MD   +M+ + SW  QIG+LGL ++W  IH  V LWY    I+ AIESY IS G+ K+Y 
Sbjct: 143 MDSNQSMRLLSSWIGQIGDLGLNLLWRFIHIVVSLWYIVSGISEAIESYAISLGLNKKYS 202

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           ++D++KLR LA+V++ E    +  V++LLQWL  IGVK V L+D++G+LKKSK+ IL  +
Sbjct: 203 SIDLEKLRCLAVVVDIEAVQDVAKVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETV 262

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
             + L EE G+ +   D K I LEF S  D KEAV KAAN+L  +Y+K       Q E  
Sbjct: 263 PGSMLLEEIGK-DFSPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPENDQGENF 321

Query: 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
           FTE+H++EAL  VG     PDLLLVYGP+R HLGFPAWR+RYTEIV
Sbjct: 322 FTESHLNEALGVVGENVHVPDLLLVYGPIRSHLGFPAWRLRYTEIV 367

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4835781|gb|AAD30247.1|AC007296_8 F25C20.9 [Arabidopsis thaliana]

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 153/226 (67%), Gaps = 1/226 (0%)

Query: 1   MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60
           MD   +M+ + +W  QIG+LGL ++W  IH  V LWY    I  AIESY I+ G+ K+Y 
Sbjct: 164 MDSNQSMRLLSAWIGQIGDLGLNLLWRFIHIVVSLWYIVSGIFEAIESYAITLGLNKKYG 223

Query: 61  ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
           ++D++KLR LA+V++ E A  +  V++LLQWL  IGVK V L+D++G+LKKSK+ IL  +
Sbjct: 224 SIDLEKLRCLAVVVDIEAAQDVANVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETV 283

Query: 121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
             + L EE  E ++  D K I LEF S  D KEAV KAAN+L  +Y+K       + E  
Sbjct: 284 PGSMLLEEI-EKDVAPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDF 342

Query: 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
           FTE+H+++ALR VG     PDLLLVYGP+R HLGFPAWR+RYTEIV
Sbjct: 343 FTESHLNDALRVVGENVHVPDLLLVYGPIRSHLGFPAWRLRYTEIV 388

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:4010713435	254	LEW1 "LEAF WILTING 1" [Arabido	0.995	0.885	0.473	6.7e-49
UNIPROTKB|Q96E22	293	NUS1 "Nogo-B receptor" [Homo s	0.685	0.529	0.284	8.9e-10
UNIPROTKB|F1N8Y0	218	NUS1 "Uncharacterized protein"	0.637	0.660	0.3	3.2e-09
UNIPROTKB|I3LLX5	296	NUS1 "Uncharacterized protein"	0.690	0.527	0.287	1.1e-08
ZFIN|ZDB-GENE-040718-48	274	nus1 "nuclear undecaprenyl pyr	0.685	0.565	0.255	3e-07
UNIPROTKB|E2RT93	293	NUS1 "Uncharacterized protein"	0.646	0.498	0.270	3.6e-07
RGD|1307879	293	Nus1 "nuclear undecaprenyl pyr	0.659	0.508	0.258	6.6e-06
MGI|MGI:1196365	297	Nus1 "nuclear undecaprenyl pyr	0.703	0.535	0.259	2.1e-05
POMBASE|SPBC2A9.06c	258	SPBC2A9.06c "di-trans,poly-cis	0.681	0.596	0.25	0.00014
DICTYBASE|DDB_G0271830	354	DDB_G0271830 "Nogo-B receptor"	0.442	0.282	0.222	0.00051

TAIR|locus:4010713435 LEW1 "LEAF WILTING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 107/226 (47%), Positives = 143/226 (63%)

Query:     1 MDFRDTMQKVYSWACQXXXXXXXXXXXXXHFAVDLWYFALHIACAIESYLISSGILKRYK 60
             MD   +M+ + +W  Q             H  V LWY    I  AIESY I+ G+ K+Y 
Sbjct:     1 MDSNQSMRLLSAWIGQIGDLGLNLLWRFIHIVVSLWYIVSGIFEAIESYAITLGLNKKYG 60

Query:    61 ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
             ++D++KLR LA+V++ E A  +  V++LLQWL  IGVK V L+D++G+LKKSK+ IL  +
Sbjct:    61 SIDLEKLRCLAVVVDIEAAQDVANVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETV 120

Query:   121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
               + L EE  E ++  D K I LEF S  D KEAV KAAN+L  +Y+K       + E  
Sbjct:   121 PGSMLLEEI-EKDVAPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDF 179

Query:   181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
             FTE+H+++ALR VG     PDLLLVYGP+R HLGFPAWR+RYTEIV
Sbjct:   180 FTESHLNDALRVVGENVHVPDLLLVYGPIRSHLGFPAWRLRYTEIV 225

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0006487 "protein N-linked glycosylation" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009645 "response to low light intensity stimulus" evidence=IMP

GO:0019408 "dolichol biosynthetic process" evidence=IMP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0045547 "dehydrodolichyl diphosphate synthase activity" evidence=IDA

UNIPROTKB|Q96E22 NUS1 "Nogo-B receptor" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 8.9e-10, P = 8.9e-10
 Identities = 51/179 (28%), Positives = 88/179 (49%)

Query:    64 IDKLR-YLAIVI-ESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILK----------- 110
             ++KL  ++ +VI E E+      +  L+ W + +G+ ++ +YD +GI K           
Sbjct:    94 LEKLPVHMGLVITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEIL 153

Query:   111 KSKESILGKLNNATLFEEAGESNLLLDHK---HITLEFASFPDGKEAVAKAANLLFMKYV 167
             K ++ +LG L+ +    E   SN   D     H+ ++  S  DGK  + +AA      + 
Sbjct:   154 KQQQELLG-LDCSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIVRAAQ----DFC 208

Query:   168 KLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
             +L    + +   +  +  ++  L + GC  P+PDL+L +GPV   LGF  W IR TEIV
Sbjct:   209 QLVAQKQKRPTDLDVDT-LASLLSSNGC--PDPDLVLKFGPVDSTLGFLPWHIRLTEIV 264

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0055092 "sterol homeostasis" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IGI

UNIPROTKB|F1N8Y0 NUS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 145 (56.1 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 51/170 (30%), Positives = 86/170 (50%)

Query:    72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILK-----------KSKESILG-K 119
             +V E E +Y   A   L+ W + +G+ +V +YD  GI K           K ++ +LG  
Sbjct:    31 VVTEEEPSYADMA--SLVVWCMAVGISYVSVYDHNGIFKRNNSRLMDEILKQEQELLGLD 88

Query:   120 LNNATL-FEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178
              +  T+ F    +++ +L+ +  TL+  S  DGK  + KAA   F + V        Q++
Sbjct:    89 CSKYTVEFANQDKADQVLNCQS-TLKVLSPEDGKADIVKAAQN-FCQLVA-------QQQ 139

Query:   179 KIFTEAHMS--EALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
             + +T+  ++  + L +     P+PDL+L +GPV   LGF  W IR TEI+
Sbjct:   140 RTYTDLDVNVLDNLLSSTSGFPDPDLVLKFGPVDSTLGFLPWHIRLTEII 189

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0055092 "sterol homeostasis" evidence=IEA

UNIPROTKB|I3LLX5 NUS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 146 (56.5 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 52/181 (28%), Positives = 87/181 (48%)

Query:    64 IDKLR-YLAIVI-ESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILK----------- 110
             ++KL  ++ +VI E E+      +  L+ W + +G+ ++ +YD +GI K           
Sbjct:    94 LEKLPVHMGLVITEEEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEIL 153

Query:   111 KSKESILGKLNNATLFEEAGESNLLLDHK---HITLEFASFPDGKEAVAKAANLLFMKYV 167
             K ++ +LG L+ +    E   SN   D        ++  S  DGK  + +AA   F + V
Sbjct:   154 KQQQELLG-LDCSKYSPEFSNSNDKDDQVLNCQSAVKVLSPEDGKADIVRAAQD-FCQLV 211

Query:   168 KLGGSGKIQEEKIFTEAHMSEALRAVGCKG--PEPDLLLVYGPVRCHLGFPAWRIRYTEI 225
                   + Q++    +  M ++L +  C    P+PDL+L +GPV   LGF  W IR TEI
Sbjct:   212 -----AQQQKKSTDLDVDMLDSLLSKSCSNGFPDPDLVLKFGPVDSTLGFLPWHIRLTEI 266

Query:   226 V 226
             V
Sbjct:   267 V 267

GO:0055092 "sterol homeostasis" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

ZFIN|ZDB-GENE-040718-48 nus1 "nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 135 (52.6 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 46/180 (25%), Positives = 88/180 (48%)

Query:    64 IDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILK-----------KS 112
             ++KL     ++ +EE  H   +  L+ W + +G+ +V +YD +G+ K           K 
Sbjct:    74 LEKLPLHVGLLVTEEEIHYTDIANLVVWCMAVGISYVSVYDNQGVFKRNNSRLMEEILKQ 133

Query:   113 KESILGKLNNATLFEEAGESNLLLDHKHIT----LEFASFPDGKEAVAKAANLLFMKYVK 168
             ++ +LG  ++    E         +H+ ++    ++  S  DG+ ++ +AA  L  + V+
Sbjct:   134 QQELLGMGSSKYSVEILKNGTNKQEHQVLSCQSMVKVLSPDDGRLSIVQAAQQL-CRAVE 192

Query:   169 LGGSGKIQEEKIFTEAHMS--EALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
                    Q+EK   + ++S  ++L       P+PDL+L +G V+  LGF  W IR TEI+
Sbjct:   193 -------QKEKTSKDINVSVLDSLLKESKNIPDPDLVLKFGTVQSTLGFLPWHIRLTEII 245

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0002040 "sprouting angiogenesis" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|E2RT93 NUS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 46/170 (27%), Positives = 79/170 (46%)

Query:    72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEA-- 129
             +V E E+      +  L+ W + +G+ ++ +YD +GI K+         NN+ L +E   
Sbjct:   104 VVTEEEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKR---------NNSRLMDEILK 154

Query:   130 GESNLL-LDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSE 188
              +  LL LD    + EFA+  D  + V    + + +   + G +  ++  + F +    +
Sbjct:   155 QQQELLGLDCSKYSPEFANSNDKDDQVLNCRSAVRVLSPEDGKADIVRAAQDFCQLVAQQ 214

Query:   189 ALRA-----------VGCKG-PEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
               R+           +   G P+PDL+L +GPV   LGF  W IR TEIV
Sbjct:   215 QKRSADLDVDMLDSLLSSTGFPDPDLVLKFGPVDSTLGFLPWHIRLTEIV 264

GO:0055092 "sterol homeostasis" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

RGD|1307879 Nus1 "nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 125 (49.1 bits), Expect = 6.6e-06, P = 6.6e-06
 Identities = 45/174 (25%), Positives = 83/174 (47%)

Query:    69 YLAIVIESE-EAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFE 127
             ++ +VI  E +      +  L+ W + +G+ ++ +YD +GI K+         NN+ L +
Sbjct:   100 HMGLVITEEVQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKR---------NNSRLMD 150

Query:   128 EA--GESNLL-LDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEA 184
             E    +  LL  D    + EFA+  D  + V    + + +   + G +  ++  + F ++
Sbjct:   151 EILKQQQELLGQDCSKYSAEFANSNDKDDQVLNCPSAVKVLSPEDGKADIVRAAQDFCQS 210

Query:   185 HMSEALRA--VGCK---------G-PEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
                +  R   +G +         G P+PDL+L +GPV   LGF  W+IR TEI+
Sbjct:   211 VAQQQRRPTELGVELLDSLLSSHGFPDPDLVLKFGPVDSTLGFLPWQIRLTEII 264

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA;ISO

GO:0055092 "sterol homeostasis" evidence=IEA;ISO

MGI|MGI:1196365 Nus1 "nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 121 (47.7 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 49/189 (25%), Positives = 91/189 (48%)

Query:    58 RYKALDIDKLRYLAI---VIESEEAYHIPA---VIQLLQWLVDIGVKHVCLYDAEGILKK 111
             R++A D+  L+ L +   ++ +EE    P+   +  L+ W + +G+ ++ +YD +GI K+
Sbjct:    90 RWRA-DVRSLQKLPVHMGLLVTEEVQE-PSFSDIASLVVWCMAVGISYISVYDHQGIFKR 147

Query:   112 SKESILGKL---------NNATLFE-EAGESNLLLDHK---HITLEFASFPDGKEAVAKA 158
             +   ++ ++          + + +  E   SN   D        ++  S  DGK  + +A
Sbjct:   148 NNSRLMDEILKQQQELLGQDCSKYSAEFANSNDKDDQDLNCPSAVKVLSPEDGKADIVRA 207

Query:   159 ANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKG-PEPDLLLVYGPVRCHLGFPA 217
             A   F + V        Q+++  T+  +      +   G P+PDL+L +GPV   LGF  
Sbjct:   208 AQD-FCQLVA-------QQQRKPTDLDVDLLGSLLSSHGFPDPDLVLKFGPVDSTLGFLP 259

Query:   218 WRIRYTEIV 226
             W+IR TEIV
Sbjct:   260 WQIRLTEIV 268

GO:0001525 "angiogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=ISO;IMP

GO:0055092 "sterol homeostasis" evidence=IMP

POMBASE|SPBC2A9.06c SPBC2A9.06c "di-trans,poly-cis-decaprenylcistransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 113 (44.8 bits), Expect = 0.00014, P = 0.00014
 Identities = 44/176 (25%), Positives = 83/176 (47%)

Query:    66 KLRYLAIVIESEEAYHIPAVI----QLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121
             K +++A++IE  E   I  +I    +L  W V   ++ + +Y+ +G LK+S E++   + 
Sbjct:    59 KPKHIAVIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIYERKGFLKQSPEAVEKAIY 118

Query:   122 NATLFEEAGESNLLLDHKHITLEFASFPDGK---EAVAKAANLLFMK-----YVKLG-GS 172
             +   F   G+   +    H+T   +  PD K   + V    +L+  +      + L  G 
Sbjct:   119 SHLPFYLGGDKCTV----HVTNPCS--PDEKNQNDCVDLKVHLIAKEDGRDAIIDLTRGL 172

Query:   173 GKIQEEKIFTEAHMSEALRAVGCKG---PEPDLLLVYGPVRCHLGFPAWRIRYTEI 225
               +  +K+ +   ++  L     K    PEPDLL+++ P+    GFP W++R  EI
Sbjct:   173 ADLCTKKVISSTQVTLELIDKELKESVIPEPDLLIIFAPLLKLQGFPPWQLRLCEI 228

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006486 "protein glycosylation" evidence=ISO

GO:0008834 "di-trans,poly-cis-decaprenylcistransferase activity" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0271830 DDB_G0271830 "Nogo-B receptor" [Dictyostelium discoideum (taxid:44689)]

 Score = 81 (33.6 bits), Expect = 0.00051, Sum P(2) = 0.00051
 Identities = 24/108 (22%), Positives = 47/108 (43%)

Query:   120 LNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179
             LNN       G     ++ + + +   +  DGK+ +         KY+K     K+ ++ 
Sbjct:   225 LNNLKNITPIGGDMTDINSRILNVSIVTVEDGKQELINITK----KYIK---DSKLNQDL 277

Query:   180 IFTEAHMSEALRA-VGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV 226
             I  E++++  L + +G    EP++ L +       GF  W I+ TE +
Sbjct:   278 ILNESYVNSNLPSFIGGNDFEPEVALDFSDKHLFSGFLPWHIKLTEFI 325

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_IV0453	hypothetical protein (254 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XV.832.1	hypothetical protein (236 aa)						•			0.899
	gw1.VII.3333.1	annotation not avaliable (311 aa)						•			0.899
	gw1.IV.3487.1	hypothetical protein (293 aa)						•			0.899
	gw1.II.860.1	hypothetical protein (306 aa)						•			0.899
	grail3.0137000601	hypothetical protein (134 aa)						•			0.899
	grail3.0045022601	hypothetical protein (259 aa)						•			0.899
	grail3.0001025501	hypothetical protein (314 aa)						•			0.899
	fgenesh4_pm.C_LG_II001087	hypothetical protein (287 aa)						•			0.899
	eugene3.00060040	SubName- Full=Putative uncharacterized protein; (342 aa)						•			0.899
	estExt_Genewise1_v1.C_570227	hypothetical protein (366 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PRK14831	249	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14836	253	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14829	243	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14830	251	undecaprenyl pyrophosphate synthase; Provisional	100.0
cd00475	221	CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (	100.0
PRK14834	249	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14832	253	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14840	250	undecaprenyl pyrophosphate synthase; Provisional	100.0
TIGR00055	226	uppS undecaprenyl diphosphate synthase. Alternate	100.0
PRK14828	256	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14827	296	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14838	242	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14835	275	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14842	241	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14837	230	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14841	233	undecaprenyl pyrophosphate synthase; Provisional	100.0
COG0020	245	UppS Undecaprenyl pyrophosphate synthase [Lipid me	100.0
PRK14833	233	undecaprenyl pyrophosphate synthase; Provisional	100.0
PRK14839	239	undecaprenyl pyrophosphate synthase; Provisional	100.0
PTZ00349	322	dehydrodolichyl diphosphate synthetase; Provisiona	100.0
PRK10240	229	undecaprenyl pyrophosphate synthase; Provisional	100.0
PF01255	223	Prenyltransf: Putative undecaprenyl diphosphate sy	100.0
KOG1602	271	consensus Cis-prenyltransferase [Lipid transport a	99.98
KOG2818	263	consensus Predicted undecaprenyl diphosphate synth	99.95

>PRK14831 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1e-40  Score=289.67  Aligned_cols=156  Identities=16%  Similarity=0.247  Sum_probs=129.6

Q ss_pred             CCCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207           64 IDKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----  121 (226)
                      ..+|+|||||||||++           |   |++++.+++.||.+.||++||+|+|| +|+||+.+++   ++.+.    
T Consensus        18 ~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~   97 (249)
T PRK14831         18 QRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLR   97 (249)
T ss_pred             CCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHH
Confidence            3689999999999974           1   89999999999999999999999998 9999998753   32221    


Q ss_pred             h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                      +      .+           .+|..      .....|+++++++|++|.+||||+||++|++++++++ +.|++++++|+
T Consensus        98 ~~~~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v-~~g~l~~~~i~  176 (249)
T PRK14831         98 RELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQV-QQGELDPSEID  176 (249)
T ss_pred             HHHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC
Confidence            1      11           13321      1235688999999999999999999999999998876 77888888776


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          ++.++++|+  +.++|||||+|||||+.|||||||||++|||||
T Consensus       177 ----e~~~~~~L~--t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~  218 (249)
T PRK14831        177 ----ENLFESELY--TAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIY  218 (249)
T ss_pred             ----HHHHHHhhc--cCCCCCCCEEEeCCCCccccCchhhhhhceeEE
Confidence                555667776  678999999999999999999999999999985

>PRK14836 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.5e-40  Score=289.09  Aligned_cols=156  Identities=18%  Similarity=0.257  Sum_probs=129.5

Q ss_pred             CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh---
Q 027207           64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN---  122 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~---  122 (226)
                      .++|+|||||||||++              .|++++.+++.||.+.||++||+|+|| +|+|+..+++   |+.+..   
T Consensus        12 ~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~   91 (253)
T PRK14836         12 ENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALD   91 (253)
T ss_pred             CCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence            4789999999999964              189999999999999999999999997 8999998764   332211   


Q ss_pred             -------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          123 -------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       123 -------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                             .+           .+|..      .....|+++++++|+++.+||||+||++|+|++++++ +.|++++++|+
T Consensus        92 ~~~~~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~-~~g~l~~~~i~  170 (253)
T PRK14836         92 REVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREV-AAGKLAPDEID  170 (253)
T ss_pred             HHHHHHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChHhCC
Confidence                   11           23321      1335688999999999999999999999999998775 77888888776


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          ++.+.+.|+  ++++|||||+|||||+.|||||||||++|||||
T Consensus       171 ----e~~i~~~L~--~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEly  212 (253)
T PRK14836        171 ----EALLAQHLA--LADLPEPDLFIRTSGELRISNFLLWQLAYTELY  212 (253)
T ss_pred             ----HHHHHHHhc--cCCCCCCCEEEEcCCcccccCChHHHHhheEEE
Confidence                555666766  678999999999999999999999999999986

>PRK14829 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=2.4e-40  Score=286.52  Aligned_cols=156  Identities=19%  Similarity=0.254  Sum_probs=128.7

Q ss_pred             CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEec-CCcccccHHHH---HHHhh----
Q 027207           64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKESI---LGKLN----  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~-sg~lk~~~~~l---~~~l~----  121 (226)
                      ..+|+|||||||||++     +         |++++.+++.||.+.||++||+|+| ++|+||+.+++   |+.+.    
T Consensus        12 ~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~   91 (243)
T PRK14829         12 NKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIH   91 (243)
T ss_pred             CCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999974     1         8999999999999999999999999 59999998753   32221    


Q ss_pred             h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                      .      ..           .+|..      ..+..|+++++++|+++.+||||+||++|++++++++ +.|.+++++|+
T Consensus        92 ~~~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~-~~g~~~~~~i~  170 (243)
T PRK14829         92 RRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREV-RDGKISGDRVT  170 (243)
T ss_pred             HHHHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC
Confidence            1      11           23321      1234688999999999999999999999999998775 77888888776


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          ++.+.+.|+  +++.|||||+|||||+.|||||||||++|||||
T Consensus       171 ----e~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~  212 (243)
T PRK14829        171 ----EKMISDHLY--NPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELD  212 (243)
T ss_pred             ----HHHHHHHhc--cCCCCCCCEEEEcCCcccccCchHHhHhheEEE
Confidence                555666776  578999999999999999999999999999985

>PRK14830 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=6e-40  Score=285.14  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=128.8

Q ss_pred             CCCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207           64 IDKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----  121 (226)
                      .++|+|||||||||++           |   |++++.+++.||.+.||++||+|+|| +|+|++.+++   ++.+.    
T Consensus        20 ~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~   99 (251)
T PRK14830         20 GNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLD   99 (251)
T ss_pred             CCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999974           1   89999999999999999999999997 8999998753   32221    


Q ss_pred             h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                      +      .+           .+|..      .....|+++++++||++.+||||+||++|++++++++ +.|.+++++|+
T Consensus       100 ~~~~~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v-~~g~l~~~~I~  178 (251)
T PRK14830        100 KFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDV-LDGKLNPEDIT  178 (251)
T ss_pred             HHHHHHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC
Confidence            1      11           12321      1335688999999999999999999999999998876 77888888776


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          ++.+++.|+  +.+.|||||+|||||+.|||||||||++|||||
T Consensus       179 ----e~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~  220 (251)
T PRK14830        179 ----EELISNYLM--TKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFY  220 (251)
T ss_pred             ----HHHHHHHhC--cCCCCCCCEEEeCCCCCcccCChHHHHcceEEE
Confidence                455666666  568999999999999999999999999999985

>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates

Probab=100.00  E-value=4.4e-40  Score=281.34  Aligned_cols=153  Identities=22%  Similarity=0.354  Sum_probs=126.3

Q ss_pred             CCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----h--
Q 027207           67 LRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----N--  122 (226)
Q Consensus        67 P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----~--  122 (226)
                      |+|||||||||++     +         |++++.+++.||.+.||++||+|+|| +|+||+.+++   |+.+.    +  
T Consensus         1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~   80 (221)
T cd00475           1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL   80 (221)
T ss_pred             CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence            8999999999974     1         89999999999999999999999997 8999998763   32221    1  


Q ss_pred             ----cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhh
Q 027207          123 ----AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF  181 (226)
Q Consensus       123 ----~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l  181 (226)
                          .+           .+|..      .....|+++++++|+++++||||+||++|+|++++++ +.|++++++|+   
T Consensus        81 ~~~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~-~~~~~~~~~i~---  156 (221)
T cd00475          81 KELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKV-KAGKLTPEDID---  156 (221)
T ss_pred             HHHHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC---
Confidence                11           23331      1335688899999999999999999999999998775 77888888776   


Q ss_pred             hHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          182 TEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       182 ~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                       ++.+.+.|+  +.+.|||||+|||||+.|||||||||++||||+
T Consensus       157 -~~~~~~~L~--~~~~p~pDLlIRTsGe~RLSnFLlWQ~~yaEl~  198 (221)
T cd00475         157 -ESTLNKHLY--THDSPDPDLLIRTSGEQRLSNFLLWQSAYSELY  198 (221)
T ss_pred             -HHHHHHhhC--cCCCCCCCEEEecCCccccccchHhhHhheeEE
Confidence             455666666  567899999999999999999999999999985

A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.

>PRK14834 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=8.3e-40  Score=283.65  Aligned_cols=156  Identities=17%  Similarity=0.272  Sum_probs=128.6

Q ss_pred             CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207           64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----  121 (226)
                      ..+|+|||||||||++              .|++++.+++.||.+.||++||+|+|| +|+||+.+++   |+.+.    
T Consensus        12 ~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~   91 (249)
T PRK14834         12 MSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIR   91 (249)
T ss_pred             CCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999973              189999999999999999999999986 8999998753   33221    


Q ss_pred             h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                      +      .+           .+|..      ..+..|+++++++|+++.+||||+||++|+|++++++ +.|++++++|+
T Consensus        92 ~~~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~-~~g~~~~~dI~  170 (249)
T PRK14834         92 RDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREV-AEGRLDPASID  170 (249)
T ss_pred             HHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChhhCC
Confidence            1      11           12321      1335688999999999999999999999999998775 77888888877


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      +    +.+.+.|+  +...|||||+|||||+.|||||||||++|||||
T Consensus       171 e----~~i~~~L~--~~~~pdpDLLIRTsGe~RLSnFLlWQ~~yaEly  212 (249)
T PRK14834        171 A----ETISANLD--TADIPDPDLIIRTSGEQRLSNFLLWQAAYSELL  212 (249)
T ss_pred             H----HHHHHHhc--cCCCCCCCEEEEcCCcccccCChHHhHhheEEE
Confidence            4    55556665  568899999999999999999999999999986

>PRK14832 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.4e-39  Score=282.48  Aligned_cols=156  Identities=16%  Similarity=0.221  Sum_probs=128.8

Q ss_pred             CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207           64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----  121 (226)
                      ..+|+|||||||||++     +         |++++.+++.||.+.||++||+|+|| +|+||+.+++   ++.+.    
T Consensus        16 ~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~   95 (253)
T PRK14832         16 QKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLR   95 (253)
T ss_pred             CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999974     1         89999999999999999999999997 8999998763   32221    


Q ss_pred             h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                      +      .+           .+|..      ..+..|+++++++||+|.+||||+||++|+|++++++ +.|.+++++|+
T Consensus        96 ~~~~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v-~~g~~~~~~i~  174 (253)
T PRK14832         96 RELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELV-QQGKLSADAVN  174 (253)
T ss_pred             HHHHHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhhCC
Confidence            1      11           23321      1335688999999999999999999999999998775 67788888776


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          |+.+.++|+  ++++|||||+|||||+.|||||||||++|||||
T Consensus       175 ----e~~i~~~L~--~~~~Pd~DLlIRTsGE~RLSnFLlWQ~ayaEly  216 (253)
T PRK14832        175 ----EQLVEQHLY--TADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMY  216 (253)
T ss_pred             ----HHHHHHhhC--cCCCCCCCEEEECCCcccccCcHHHHHhheEEE
Confidence                455666776  678999999999999999999999999999985

>PRK14840 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.9e-39  Score=281.16  Aligned_cols=156  Identities=20%  Similarity=0.267  Sum_probs=128.5

Q ss_pred             CCCCCeEEEEeeCCCC-----C-------------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh
Q 027207           64 IDKLRYLAIVIESEEA-----Y-------------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~-------------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~  121 (226)
                      ..+|+|||||||||++     +             |++++.+++.||.+.||++||+|+|| +|+||+.+++   |+.+.
T Consensus        16 ~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~   95 (250)
T PRK14840         16 QSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFN   95 (250)
T ss_pred             CCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHH
Confidence            4789999999999952     1             79999999999999999999999997 8999998764   32221


Q ss_pred             h----------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 027207          122 N----------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGK  174 (226)
Q Consensus       122 ~----------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~  174 (226)
                      +          .+           .+|..      ..+..|+++++++|++|.+||||+||++|++++++++ +.|++++
T Consensus        96 ~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v-~~~~~~~  174 (250)
T PRK14840         96 SQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQDL-ANKKISS  174 (250)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHHHH-HhCCCCh
Confidence            1          11           23321      1335689999999999999999999999999998876 7788888


Q ss_pred             cchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          175 IQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       175 ~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      +++++    +.+.+.|+  +.++|||||+|||||+.|||||||||++|||||
T Consensus       175 ~~i~~----~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~  220 (250)
T PRK14840        175 DDISE----ELISSYLD--TSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELY  220 (250)
T ss_pred             hhCCH----HHHHHHhc--cCCCCCCCEEEeCCCCcccccchHHhHhceeEE
Confidence            87764    55566665  568999999999999999999999999999985

>TIGR00055 uppS undecaprenyl diphosphate synthase

Probab=100.00  E-value=1.5e-39  Score=278.31  Aligned_cols=152  Identities=20%  Similarity=0.307  Sum_probs=126.8

Q ss_pred             CeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----h---
Q 027207           68 RYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----N---  122 (226)
Q Consensus        68 ~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----~---  122 (226)
                      +|||||||||++           |   |++.+.+++.||.+.||++||+|+|| +|+||+.+++   |+.+.    +   
T Consensus         1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~   80 (226)
T TIGR00055         1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK   80 (226)
T ss_pred             CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence            699999999974           1   89999999999999999999999997 8999998763   33221    1   


Q ss_pred             ---cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhh
Q 027207          123 ---AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFT  182 (226)
Q Consensus       123 ---~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~  182 (226)
                         .+           .+|..      .....|+++++++|+++.+||||+||++|+|++++++ ++|++++++|+    
T Consensus        81 ~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~-~~g~~~~~~i~----  155 (226)
T TIGR00055        81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKV-KSGKLLPEDID----  155 (226)
T ss_pred             HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhhCC----
Confidence               11           23331      1334688999999999999999999999999998876 77888888766    


Q ss_pred             HHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          183 EAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       183 e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      |+.++++|+  ++++|||||+|||||+.|||||||||++|||||
T Consensus       156 e~~~~~~L~--t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~  197 (226)
T TIGR00055       156 EETLNKHLY--TANLPPVDLLIRTSGEMRISNFLLWQSSYAELY  197 (226)
T ss_pred             HHHHHHhhc--cCCCCCCCEEEeCCCcccccCcHHHHHhceEEE
Confidence            566777776  678999999999999999999999999999985

Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.

>PRK14828 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.8e-39  Score=282.89  Aligned_cols=160  Identities=18%  Similarity=0.247  Sum_probs=133.5

Q ss_pred             CCCCCeEEEEeeCCCC---------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh---
Q 027207           64 IDKLRYLAIVIESEEA---------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN---  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~---------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~---  121 (226)
                      .++|+|||||||||++               .|++++.+++.||.+.||++||+|+|| +|++++.+++   ++.+.   
T Consensus        24 ~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l  103 (256)
T PRK14828         24 AQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVV  103 (256)
T ss_pred             CCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHH
Confidence            3689999999999952               178999999999999999999999996 8999998753   32221   


Q ss_pred             -h---cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhh
Q 027207          122 -N---AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (226)
Q Consensus       122 -~---~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~  180 (226)
                       +   .+           .+|..      ..+..|+++++++|+++.+||||+||++|++++++++ +.|++++++++++
T Consensus       104 ~~~~~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~~~~~  182 (256)
T PRK14828        104 RQLAPDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEH-KDKGTSIDELAES  182 (256)
T ss_pred             HHHHHhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhhcccc
Confidence             1   11           12321      1335688999999999999999999999999998886 5677888877767


Q ss_pred             hhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       181 l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      ++++.+.++|+  +++.|||||+|||||+.|||||||||++|||||
T Consensus       183 i~e~~i~~~L~--~~~~P~pDLlIRTsGE~RLSnFLlWQ~ayaEly  226 (256)
T PRK14828        183 VTVDAISTHLY--TGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYY  226 (256)
T ss_pred             CCHHHHHHHhc--cCCCCCCCEEEeCCCCCcccCChHHHhhheEEE
Confidence            78888999987  678899999999999999999999999999986

>PRK14827 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1.8e-39  Score=286.91  Aligned_cols=155  Identities=18%  Similarity=0.242  Sum_probs=128.7

Q ss_pred             CCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEec-CCcccccHHHH---HHHh----hh
Q 027207           65 DKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKESI---LGKL----NN  122 (226)
Q Consensus        65 k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~-sg~lk~~~~~l---~~~l----~~  122 (226)
                      .+|+|||||||||++     +         |++++.+++.||.++||++||+|+| ++|+|++.+++   |+.+    ..
T Consensus        66 ~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~  145 (296)
T PRK14827         66 RLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRR  145 (296)
T ss_pred             CCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHH
Confidence            679999999999974     1         8999999999999999999999999 59999998863   3221    11


Q ss_pred             ------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207          123 ------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK  179 (226)
Q Consensus       123 ------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~  179 (226)
                            ..           .+|..      ..+..|+++++++||++.+||||+||++|++++++++ +.|++++++|+ 
T Consensus       146 ~~~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~~v-~~g~l~~~~I~-  223 (296)
T PRK14827        146 RRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREA-AAGRLNPERIT-  223 (296)
T ss_pred             HHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChhhcc-
Confidence                  11           12221      1234589999999999999999999999999998876 77888888776 


Q ss_pred             hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                         |+.+.++|+  ++++|||||+|||||+.|||||||||++|||||
T Consensus       224 ---e~~i~~~L~--t~~~PdpDLlIRTsGE~RLSnFLLWQ~ayaEl~  265 (296)
T PRK14827        224 ---ESTIARHLQ--RPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYI  265 (296)
T ss_pred             ---HHHHHHHhc--cCCCCCCCEEEecCCcccccCchHhhhhheEEE
Confidence               566777776  578999999999999999999999999999985

>PRK14838 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=3.1e-39  Score=279.01  Aligned_cols=155  Identities=17%  Similarity=0.210  Sum_probs=129.1

Q ss_pred             CCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----
Q 027207           65 DKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN----  122 (226)
Q Consensus        65 k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~----  122 (226)
                      ++|+|||||||||++     +         |++++.+++.||.+.||++||+|+|| +|+||+.+++   ++.+.+    
T Consensus         9 ~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~~   88 (242)
T PRK14838          9 RIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEE   88 (242)
T ss_pred             CCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHHH
Confidence            589999999999974     1         89999999999999999999999997 8999998763   333221    


Q ss_pred             ----cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhh
Q 027207          123 ----AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF  181 (226)
Q Consensus       123 ----~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l  181 (226)
                          ..           .+|..      .....|+++++++||++.+||||+||++|+|++++++ +.|++++++|+   
T Consensus        89 ~~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~-~~g~~~~~~i~---  164 (242)
T PRK14838         89 ETFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLV-QNGELNPEEIT---  164 (242)
T ss_pred             HHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHH-HhCCCChhhCC---
Confidence                11           23331      1235688999999999999999999999999998876 77888888776   


Q ss_pred             hHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          182 TEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       182 ~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                       |+.+.+.|+  ++++|||||+|||||+.|||||||||++|||||
T Consensus       165 -e~~~~~~L~--~~~~pd~DLlIRTsGE~RLSnFLlWQ~ayaEl~  206 (242)
T PRK14838        165 -EESISEHLT--TNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELY  206 (242)
T ss_pred             -HHHHHHHhc--cCCCCCCCEEEeCCCCccccCchHHHhcceeEE
Confidence             556666666  678999999999999999999999999999985

>PRK14835 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=4.3e-39  Score=282.55  Aligned_cols=160  Identities=18%  Similarity=0.324  Sum_probs=134.7

Q ss_pred             CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHH---HHHHh----h
Q 027207           64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKL----N  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~---l~~~l----~  121 (226)
                      ..+|+|||||||||++              .|++++.+++.||.+.||++||+|+|| +|+||+.++   |++.+    .
T Consensus        39 ~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~  118 (275)
T PRK14835         39 GKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREAR  118 (275)
T ss_pred             CCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999974              189999999999999999999999997 899999775   33222    1


Q ss_pred             h--------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccc
Q 027207          122 N--------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ  176 (226)
Q Consensus       122 ~--------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~d  176 (226)
                      +        .+           .+|..      .....|+++++++||++.+||||+||++|++++++++ +.|++++++
T Consensus       119 ~~~~~~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~i~~~~-~~g~~~~~~  197 (275)
T PRK14835        119 RMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEA-AATGKSPEE  197 (275)
T ss_pred             HHhchhhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChHH
Confidence            1        01           12221      1234688999999999999999999999999998776 778889988


Q ss_pred             hhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          177 EEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       177 i~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      |+.+++|+.+.++|+  +.+.|||||+|||||+.|||||||||++|||||
T Consensus       198 i~~~~~e~~i~~~L~--~~~~p~pDLLIRTsGE~RLSnFLLWQsayaEly  245 (275)
T PRK14835        198 VAAELTPEHISAHLY--TAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYY  245 (275)
T ss_pred             hcccCCHHHHHHHhc--cCCCCCCCEEEecCCCccccCCHHHhhhheEEE
Confidence            877788999999998  678899999999999999999999999999986

>PRK14842 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=5e-39  Score=277.41  Aligned_cols=155  Identities=19%  Similarity=0.227  Sum_probs=127.4

Q ss_pred             CCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----
Q 027207           65 DKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN----  122 (226)
Q Consensus        65 k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~----  122 (226)
                      .+|+|||||||||++           |   |++++.+++.||.+.||++||+|+|| +|+||+.+++   |+.+.+    
T Consensus         7 ~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~   86 (241)
T PRK14842          7 TIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIET   86 (241)
T ss_pred             CCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHH
Confidence            589999999999974           1   89999999999999999999999997 8999998763   322211    


Q ss_pred             ------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc-chh
Q 027207          123 ------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI-QEE  178 (226)
Q Consensus       123 ------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~-di~  178 (226)
                            ..           .+|+.      .....|+++++++||+|.+||||+||++|++++++++ +.|+.+++ +++
T Consensus        87 ~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~~i~  165 (241)
T PRK14842         87 RLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLAR-KAKKVTLEKPLK  165 (241)
T ss_pred             HHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCCccccCC
Confidence                  11           23331      1335688999999999999999999999999998886 55666654 444


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          |+.+.++|+  +.+.|||||+|||||+.|||||||||++|||||
T Consensus       166 ----e~~~~~~L~--t~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEl~  207 (241)
T PRK14842        166 ----EKEFEKFLY--TSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELY  207 (241)
T ss_pred             ----HHHHHHHhC--cCCCCCCCEEEECCCcccccCCHHHHHhceEEE
Confidence                677888887  678999999999999999999999999999985

>PRK14837 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=6.6e-39  Score=274.62  Aligned_cols=152  Identities=17%  Similarity=0.257  Sum_probs=124.8

Q ss_pred             CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207           64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----  121 (226)
                      .++|+|||||||||++     +         |++++.+++.||.+.||++||+|+|| +|+||+.+++   |+.+.    
T Consensus         4 ~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~   83 (230)
T PRK14837          4 NSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLS   83 (230)
T ss_pred             CCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999963     1         89999999999999999999999997 8999998753   33221    


Q ss_pred             h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                      +      .+           .+|..      .....|+++++++|+++.+||||+||++|+|++++     +++++++|+
T Consensus        84 ~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~-----~~~~~~~i~  158 (230)
T PRK14837         84 SEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLS-----SGLDLETLN  158 (230)
T ss_pred             HHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHh-----cCCChhhCC
Confidence            1      11           23321      13346889999999999999999999999999862     356676655


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          |+.+.++|+  ++++|||||+|||||+.|||||||||++|||||
T Consensus       159 ----e~~~~~~L~--~~~~p~~DLlIRTsGE~RLSnFLLWQ~ayaEly  200 (230)
T PRK14837        159 ----ENVFSKFLD--NPELPDLDLLIRTGGDMRISNFLLWRIAYCEFI  200 (230)
T ss_pred             ----HHHHHHhhc--cCCCCCCCEEEECCCcccccccHHHhhhheEEE
Confidence                667777777  678999999999999999999999999999985

>PRK14841 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=1e-38  Score=274.63  Aligned_cols=153  Identities=18%  Similarity=0.269  Sum_probs=124.3

Q ss_pred             CCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----
Q 027207           65 DKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN----  122 (226)
Q Consensus        65 k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~----  122 (226)
                      ++|+|||||||||++           |   |.+++.+++.||.+.||++||+|+|| +|+||+.+++   ++.+.+    
T Consensus         2 ~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~   81 (233)
T PRK14841          2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR   81 (233)
T ss_pred             CCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            689999999999974           1   89999999999999999999999997 8999998764   322211    


Q ss_pred             ------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207          123 ------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK  179 (226)
Q Consensus       123 ------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~  179 (226)
                            ..           .+|..      ..+..|+++++++|++|.+||||+||++|++++++++ +.|+.  +++  
T Consensus        82 ~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~--~~i--  156 (233)
T PRK14841         82 EMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDV-SQGKK--IEL--  156 (233)
T ss_pred             HHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HcCCc--CCC--
Confidence                  11           23331      1335688999999999999999999999999998876 34432  333  


Q ss_pred             hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                        +|+.+.+.|+  +++.|||||+|||||+.|||||||||++|||||
T Consensus       157 --~~~~~~~~L~--~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEly  199 (233)
T PRK14841        157 --TEETFRQYLY--LPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELY  199 (233)
T ss_pred             --CHHHHHHHhc--cCCCCCCCEEEeCCCCccccCcHHHHhhceeEE
Confidence              4666777777  678999999999999999999999999999985

>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]

Probab=100.00  E-value=2.3e-38  Score=273.90  Aligned_cols=155  Identities=20%  Similarity=0.332  Sum_probs=127.3

Q ss_pred             CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----h
Q 027207           65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----N  122 (226)
Q Consensus        65 k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----~  122 (226)
                      .+|+|||+|||||.+              .|.+.+.+++.||.+.||++||+|+|| +|+|++.+++   +..+.    .
T Consensus        15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~   94 (245)
T COG0020          15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE   94 (245)
T ss_pred             ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence            579999999999963              189999999999999999999999996 7889887753   32211    1


Q ss_pred             ------cC-----------CCCc-h-----hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207          123 ------AT-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK  179 (226)
Q Consensus       123 ------~~-----------~~~~-~-----~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~  179 (226)
                            .+           .+|. .     .++..|+++++++++++.+||||++|++|+|++++++ +.|++++++||+
T Consensus        95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v-~~g~l~~~~I~e  173 (245)
T COG0020          95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDV-AAGKLSPEDIDE  173 (245)
T ss_pred             HHHHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHH-HcCCCChHHcCH
Confidence                  11           1222 1     1345688999999999999999999999999997775 888999998775


Q ss_pred             hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      ++    ++++|+  +.+.|||||+|||||+.|+|||||||++|||+|
T Consensus       174 ~~----i~~~L~--~~~~pdpDLlIRTsGe~RlSnFllWQ~aYsEly  214 (245)
T COG0020         174 EL----ISSHLY--TSGLPDPDLLIRTSGEQRLSNFLLWQSAYSELY  214 (245)
T ss_pred             HH----HHHhhc--ccCCCCCCEEEeCCCcccccccHHHHHHhCeEE
Confidence            55    555555  468999999999999999999999999999986

>PRK14833 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=2.1e-37  Score=266.43  Aligned_cols=154  Identities=20%  Similarity=0.282  Sum_probs=122.7

Q ss_pred             CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----
Q 027207           65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN----  122 (226)
Q Consensus        65 k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~----  122 (226)
                      ++|+|||||||||++              .|++++.+++.||.+.||++||+|+|| +|+||+.+++   ++.+.+    
T Consensus         3 ~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~   82 (233)
T PRK14833          3 NTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKD   82 (233)
T ss_pred             CCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHHH
Confidence            589999999999974              189999999999999999999999997 8999998763   322211    


Q ss_pred             ------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207          123 ------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK  179 (226)
Q Consensus       123 ------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~  179 (226)
                            .+           .+|..      ..+..|+++++++|+++.+||||+||++|++++++++ +.. ..+.+   
T Consensus        83 ~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~-~~~-~~~~~---  157 (233)
T PRK14833         83 ERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESP-PSH-IGELE---  157 (233)
T ss_pred             HHHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHh-hcc-cCccc---
Confidence                  11           13321      1334688999999999999999999999999998764 111 11223   


Q ss_pred             hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                       +.++.+.+.|+  +++.|||||+|||||+.|||||||||++|||||
T Consensus       158 -i~e~~l~~~L~--~~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEly  201 (233)
T PRK14833        158 -SLEEEISNCLD--TADLPEVDLLIRTGGEMRLSNFLLWQSSYAELF  201 (233)
T ss_pred             -CCHHHHHHHhc--cCCCCCCCEEEECCCCccccccHHHHHhceeEE
Confidence             44667777776  678999999999999999999999999999985

>PRK14839 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=5.2e-37  Score=263.88  Aligned_cols=150  Identities=18%  Similarity=0.259  Sum_probs=121.3

Q ss_pred             hcCCCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh
Q 027207           61 ALDIDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN  122 (226)
Q Consensus        61 ~~~~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~  122 (226)
                      .+|.+-|+|||||||||++     +         |++++.+++.||.+.||++||+|+|| +|+||+.+++   ++.+.+
T Consensus         4 ~~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~   83 (239)
T PRK14839          4 SLDRRSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRA   83 (239)
T ss_pred             ccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHH
Confidence            3566789999999999974     1         89999999999999999999999997 8999998863   332211


Q ss_pred             ----------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 027207          123 ----------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI  175 (226)
Q Consensus       123 ----------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~  175 (226)
                                .+           .+|..      ..+..|+++++++||++.+||||+||++|+++++         .++
T Consensus        84 ~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~---------~~~  154 (239)
T PRK14839         84 YLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL---------GPE  154 (239)
T ss_pred             HHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc---------Ccc
Confidence                      11           13331      1335688999999999999999999999999863         245


Q ss_pred             chhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       176 di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      +||    ++.+.++|+   +.+|||||+|||||+.|||||||||++|||||
T Consensus       155 ~i~----e~~~~~~l~---~~~p~~DLlIRTsGE~RLSnFLlWQ~ayael~  198 (239)
T PRK14839        155 GLS----REAFSDLLT---GDGGDVDLLIRTGGEKRLSDFLLWESAYAELH  198 (239)
T ss_pred             cCC----HHHHHHHhc---cCCCCCCEEEeCCCccccccchhhhhhheEEE
Confidence            555    566777765   47899999999999999999999999999985

>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional

Probab=100.00  E-value=4e-36  Score=266.87  Aligned_cols=161  Identities=14%  Similarity=0.182  Sum_probs=125.8

Q ss_pred             CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHh-----
Q 027207           64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKL-----  120 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l-----  120 (226)
                      .++|+|||||||||++     +         |++.+.+++.||.+.||++||+|+|| +|+||+.+++   |+.+     
T Consensus        17 g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm~L~~~~l~   96 (322)
T PTZ00349         17 FINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLFYLNLLILI   96 (322)
T ss_pred             CCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHHHHHHHHHH
Confidence            3789999999999974     1         89999999999999999999999997 8999998763   3221     


Q ss_pred             ------h--hcC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHH----------HHHHHHHHH
Q 027207          121 ------N--NAT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVA----------KAANLLFMK  165 (226)
Q Consensus       121 ------~--~~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv----------~a~r~l~~e  165 (226)
                            +  +.+           .+|..      .....|+++++++++++.+||||+||+          +|+|+++++
T Consensus        97 ~~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~~~~~~~A~~~~~~~  176 (322)
T PTZ00349         97 NEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFNPNLYFDTYKNLLEE  176 (322)
T ss_pred             HhhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcccchHHHHHHHHHHH
Confidence                  1  011           12321      134568999999999999999999999          799999776


Q ss_pred             H------------HHcCCCCcc----------------------------------chhh-hhhHHHHHHHHHhcCCCCC
Q 027207          166 Y------------VKLGGSGKI----------------------------------QEEK-IFTEAHMSEALRAVGCKGP  198 (226)
Q Consensus       166 ~------------~~~~~~~~~----------------------------------di~~-~l~e~~l~~~L~~~~~~~p  198 (226)
                      +            .+.|++++.                                  ++++ .++++.+.++|+  ++++|
T Consensus       177 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~~~~~~Ly--t~~~P  254 (322)
T PTZ00349        177 KKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLNEEQIEIVNYHKKLL--TSDLP  254 (322)
T ss_pred             hccccccccccccccccccccchhcccccccccccccccccccccccccccccccccCChhhccHHHHHHhcc--CCCCC
Confidence            3            234443311                                  1222 244556999998  78999


Q ss_pred             CCcEEEEeCCCcccCCCchhhh-hhcccC
Q 027207          199 EPDLLLVYGPVRCHLGFPAWRI-RYTEIV  226 (226)
Q Consensus       199 ePDLlI~~G~~~rLsgF~pWqi-ryTEi~  226 (226)
                      ||||+|||||+.||||||+||+ +|||||
T Consensus       255 dpDLlIRTSGE~RLSNFLLWQ~aaysEly  283 (322)
T PTZ00349        255 PPNILIRTSGEKRLSDFMLYQISEFTEIY  283 (322)
T ss_pred             CCCEEEECCCcccccccHHhhcccceEEE
Confidence            9999999999999999999999 699986

>PRK10240 undecaprenyl pyrophosphate synthase; Provisional

Probab=100.00  E-value=4.6e-35  Score=251.37  Aligned_cols=139  Identities=15%  Similarity=0.211  Sum_probs=114.3

Q ss_pred             ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh----------cC-----------CCCch------
Q 027207           81 HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN----------AT-----------LFEEA------  129 (226)
Q Consensus        81 ~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~----------~~-----------~~~~~------  129 (226)
                      |++++.+++.||.+.||++||+|+|| +|+||+.+++   ++.+.+          .+           .+|..      
T Consensus        22 G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~iG~~~~Lp~~l~~~i~  101 (229)
T PRK10240         22 GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIR  101 (229)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChhhCCHHHHHHHH
Confidence            89999999999999999999999997 8999998753   332221          11           23331      


Q ss_pred             hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCC
Q 027207          130 GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPV  209 (226)
Q Consensus       130 ~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~  209 (226)
                      .....|+++++++||++++||||+||++|+|++++++ +.|++++++|++    +.+.+.|+  ++++|||||+|||||+
T Consensus       102 ~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v-~~g~~~~~~i~e----~~i~~~L~--t~~~pdpDLlIRTsGe  174 (229)
T PRK10240        102 KSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQV-QQGNLQPDQIDE----EMLNQHIC--MHELAPVDLVIRTGGE  174 (229)
T ss_pred             HHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChhhCCH----HHHHHHhc--cCCCCCCCEEEeCCCc
Confidence            1234588999999999999999999999999998776 778888888775    44555555  5689999999999999


Q ss_pred             cccCCCchhhhhhcccC
Q 027207          210 RCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       210 ~rLsgF~pWqiryTEi~  226 (226)
                      .|||||||||++|||||
T Consensus       175 ~RLSnFLlWQ~ayaEly  191 (229)
T PRK10240        175 HRISNFLLWQIAYAELY  191 (229)
T ss_pred             ccccCChHHHHhheEEE
Confidence            99999999999999985

>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2

Probab=100.00  E-value=1.7e-34  Score=247.72  Aligned_cols=146  Identities=20%  Similarity=0.335  Sum_probs=107.7

Q ss_pred             EeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhhh------------
Q 027207           73 VIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLNN------------  122 (226)
Q Consensus        73 I~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~~------------  122 (226)
                      |||||++     +         |++++.+++.||.+.||++||+|+|| +|++|+.+++   |+.+.+            
T Consensus         1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~   80 (223)
T PF01255_consen    1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFH   80 (223)
T ss_dssp             EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            7999963     1         89999999999999999999999997 8999998763   432211            


Q ss_pred             cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhhhhHHH
Q 027207          123 AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAH  185 (226)
Q Consensus       123 ~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~l~e~~  185 (226)
                      ++           .+|..      .....|+++++++++++++||||+||++|++++++++ ++|+++++||+    ++.
T Consensus        81 ~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~-~~~~~~~~~i~----~~~  155 (223)
T PF01255_consen   81 KNGIRVRVIGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEV-QSGKLSPEDID----EEL  155 (223)
T ss_dssp             HTTEEEEEES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHH-HTTSSGGGG-S----HHH
T ss_pred             hcCeeEEEEeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhh-ccCccccccCC----HHH
Confidence            11           12321      1234578899999999999999999999999998876 78889998876    556


Q ss_pred             HHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          186 MSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       186 l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      ++++|+  ++..| |||+|||||+.|||||||||++||||+
T Consensus       156 i~~~L~--~~~~P-pDLlIRtsGe~RLS~FllWq~~y~El~  193 (223)
T PF01255_consen  156 ISSHLY--TPDLP-PDLLIRTSGEQRLSNFLLWQSAYAELY  193 (223)
T ss_dssp             HHHTST--TTTS---SEEEEETT--C-TTSSTTTTTT-EEE
T ss_pred             HHhhcc--ccCCC-CCEEEEeCCCcccCCCeEEeecCcEEE
Confidence            677776  56677 999999999999999999999999985

5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....

>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]

Probab=99.98  E-value=2.9e-32  Score=233.68  Aligned_cols=155  Identities=17%  Similarity=0.248  Sum_probs=125.0

Q ss_pred             CCCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HH----Hhh
Q 027207           64 IDKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LG----KLN  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~----~l~  121 (226)
                      ..+|+|||+|||||++           |   |..++.+++.||.++||++||+|+|+ +|+||+++++   |.    ++.
T Consensus        34 g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~  113 (271)
T KOG1602|consen   34 GPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIE  113 (271)
T ss_pred             CCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHH
Confidence            4789999999999974           1   89999999999999999999999998 8999998863   32    221


Q ss_pred             h---------cCC-----------CCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 027207          122 N---------ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI  175 (226)
Q Consensus       122 ~---------~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~  175 (226)
                      .         .++           +|+.      .....|+++++.+++++.+|.||+||+.|+|.++..+ +.|++++ 
T Consensus       114 ~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~~~~~~-~~g~~~~-  191 (271)
T KOG1602|consen  114 RLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRGIVKRV-KDGDIDV-  191 (271)
T ss_pred             HHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHHHHHHHHHHHhh-hcCCCcc-
Confidence            1         111           2221      1234689999999999999999999999999997664 6777766 


Q ss_pred             chhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       176 di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      ||+    +.++.+.|+  +...|.|||+|||||+.|||||+.||..+||++
T Consensus       192 ~i~----~~~~e~~l~--~~~~p~pDLlIRTSGe~RLSnFllWQ~s~t~l~  236 (271)
T KOG1602|consen  192 DIN----LSDIEECLY--TSDVPHPDLLIRTSGEDRLSNFLLWQTSETELF  236 (271)
T ss_pred             chh----hHHHHHhhc--cCCCCCCCEEEEcCCcchHHHHHHHHhcccEEe
Confidence            555    444556666  557799999999999999999999999999974

>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]

Probab=99.95  E-value=2.6e-27  Score=203.60  Aligned_cols=204  Identities=22%  Similarity=0.304  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--------HHHH-HhcCCCCCCeEEEEeeCCCC--CCh
Q 027207           14 ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGI--------LKRY-KALDIDKLRYLAIVIESEEA--YHI   82 (226)
Q Consensus        14 ~~~~~~~~~~~l~~liH~~~sl~~~~~~~~~~~~~~~~~~~l--------~~~~-~~~~~k~P~HlavI~d~~~~--~~~   82 (226)
                      .+|.......++.......+.+|.+..-.++.. +..+.+..        ++.. +.+ .|.|+|+++|+...+.  +..
T Consensus         5 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~l~~s~~~~~a~~r~~r~d~~~L-~k~p~hl~lvI~~v~~~~~~~   82 (263)
T KOG2818|consen    5 CCMLRSRASLLLLVKFQRCLGAFRRLWLFLIRT-KNLELSKAALHAAQRLFRTDFSSL-KKGPKHLALVIHPVEDGEGSF   82 (263)
T ss_pred             HHHHHhhHHHHHHHHHHhhHhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhhcchhhh-hhcchhheEEEEecccCCcee
Confidence            455555555555566666677776665444444 33444322        2222 334 5789999988888776  378


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCcccccHHHHHHHhhhc----CC--CCc-------hhhhhhhcCCCceEEEEEeCC
Q 027207           83 PAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNA----TL--FEE-------AGESNLLLDHKHITLEFASFP  149 (226)
Q Consensus        83 ~~l~~l~~W~~~~GI~~lslYd~sg~lk~~~~~l~~~l~~~----~~--~~~-------~~~~~~~~~~~~l~v~lls~~  149 (226)
                      ..+.+++.||...||+++++||..|..+++.+.++..+...    .+  .+.       .|......+..++.+...+..
T Consensus        83 ~da~~~v~w~v~~gik~~~lyd~~g~~~r~~~~~~~~I~s~la~~~g~~~~~~~~~~~~snD~~nQ~~~~~L~~~~~s~~  162 (263)
T KOG2818|consen   83 SDASSIVFWAVTVGIKYLSLYDRVGIKKRNMPVVRDEIISHLANYFGLDEPTLAVTIKLSNDEPNQEDKCKLGTHAISLE  162 (263)
T ss_pred             hhhHHHHHHHHHhccceeeHHHHHHHhccCcHHHHHHHHHhhhhhcCCCCCcccccCCCCCCCcccccccchhheecccc
Confidence            99999999999999999999999999999988877665432    22  111       122222356778999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHcC--CCCccchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          150 DGKEAVAKAANLLFMKYVKLG--GSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       150 dGr~~Iv~a~r~l~~e~~~~~--~~~~~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      |||..|+|.++.+...+ ...  ..++.|++++.++.++.+      ...|||||+|+||+...++||||||+|+|||+
T Consensus       163 DGr~~i~Dl~r~i~~~~-~~~~~~~~~~~itve~vds~l~e------~~~PePdLll~fg~~~~l~GfpPWhiRltEf~  234 (263)
T KOG2818|consen  163 DGRMIIIDLTRLIQELC-YLYELYRSETDITVETVDSELKE------FVEPEPDLLLFFGPVLVLQGFPPWHIRLTEFT  234 (263)
T ss_pred             cccHHHHHHHHHHHHHH-HHHHHhCCCccccHHHHHHHHHh------cCCCCcceeeeeccchhhcCCCCceeEEEEeE
Confidence            99999999999985443 322  355667787777777765      37899999999999999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 24/145 (16%)

Query: 14  ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLR--YLA 71
                   L II   I   +  W    H+ C   + +I S +      L+  + R  +  
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDR 377

Query: 72  IVIESEEAYHIPA-VIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAG 130
           + +    A HIP  ++ L+ W                ++K     ++ KL+  +L E+  
Sbjct: 378 LSVFPPSA-HIPTILLSLI-W--------------FDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 131 ESNLLLDHKHITLEFASFPDGKEAV 155
           + + +     I LE     + + A+
Sbjct: 422 KESTISIP-SIYLELKVKLENEYAL 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
2vg0_A	227	Short-chain Z-isoprenyl diphosphate synthetase; pe	100.0
3sgv_B	253	Undecaprenyl pyrophosphate synthase; alpha/beta, t	100.0
1f75_A	249	Undecaprenyl pyrophosphate synthetase; parallel be	100.0
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	100.0
4h8e_A	256	Undecaprenyl pyrophosphate synthase; alpha-helix,	100.0
2d2r_A	245	Undecaprenyl pyrophosphate synthase; prenyltransfe	100.0
3qas_B	253	Undecaprenyl pyrophosphate synthase; alpha-helix,	100.0
3ugs_B	225	Undecaprenyl pyrophosphate synthase; niaid, csgid,	100.0

>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*

Probab=100.00  E-value=7e-43  Score=298.79  Aligned_cols=159  Identities=19%  Similarity=0.302  Sum_probs=128.8

Q ss_pred             CCCCeEEEEeeCCCC-----C----------ChHHHHHHHHHHHhcCCCEEEEEec-CCcccccHHHH---HHHhh----
Q 027207           65 DKLRYLAIVIESEEA-----Y----------HIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKESI---LGKLN----  121 (226)
Q Consensus        65 k~P~HlavI~d~~~~-----~----------~~~~l~~l~~W~~~~GI~~lslYd~-sg~lk~~~~~l---~~~l~----  121 (226)
                      ++|+|||||||||++     +          |++++.+++.||.++||++||+|+| ++|+|++.+++   |+.+.    
T Consensus         1 ~iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~   80 (227)
T 2vg0_A            1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE   80 (227)
T ss_dssp             CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHH
Confidence            579999999999851     1          6899999999999999999999998 69999998753   43322    


Q ss_pred             h----cCC-----------CCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhhh
Q 027207          122 N----ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI  180 (226)
Q Consensus       122 ~----~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~~  180 (226)
                      +    .+.           +|..      .+...|+++++++|+++++||||+||++|+|++++++ ++|+++++|....
T Consensus        81 ~~~~~~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v-~~g~l~~~~~~~~  159 (227)
T 2vg0_A           81 EICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKE-LANGATAEELVDA  159 (227)
T ss_dssp             HHTCTTTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred             HHhccccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChhHhhcc
Confidence            1    111           2221      1234588999999999999999999999999998876 7888999881112


Q ss_pred             hhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       181 l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      ++|+.++++|+  +.++|||||+|||||+.|+|||||||++|||||
T Consensus       160 I~e~~i~~~L~--t~~~pdpDLlIRTsGe~RLSnFLlWQ~aysEly  203 (227)
T 2vg0_A          160 VTVEGISENLY--TSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMW  203 (227)
T ss_dssp             CCHHHHHHHST--TTTSCCCSEEEECTTCCCCTTTTTTTTTTCEEE
T ss_pred             CCHHHHHHhhc--cCCCCCCcEEEEcCCCccccCcchHHHcCeEEE
Confidence            33566777776  578999999999999999999999999999986

>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...

Probab=100.00  E-value=1.8e-42  Score=298.89  Aligned_cols=161  Identities=17%  Similarity=0.218  Sum_probs=123.6

Q ss_pred             HHhcCCCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHH---HHHHh
Q 027207           59 YKALDIDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKL  120 (226)
Q Consensus        59 ~~~~~~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~---l~~~l  120 (226)
                      -.....++|+|||||||||++     +         |++++.+++.||.+.||++||+|+|| +|+||+.++   ||+.+
T Consensus        10 ~~~~~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~   89 (253)
T 3sgv_B           10 SEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELF   89 (253)
T ss_dssp             ---CCTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHH
T ss_pred             CcccCCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHH
Confidence            344556789999999999963     1         89999999999999999999999996 899999875   44332


Q ss_pred             hh----------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 027207          121 NN----------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSG  173 (226)
Q Consensus       121 ~~----------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~  173 (226)
                      .+          .+           .+|..      .+...|+++++++|+++.+||||+||++|+|++++++ ++|+++
T Consensus        90 ~~~l~~~~~~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v-~~g~l~  168 (253)
T 3sgv_B           90 VWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQ  168 (253)
T ss_dssp             HTTHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH-HHTSSC
T ss_pred             HHHHHHHHHHHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCC
Confidence            21          11           23321      1335689999999999999999999999999998886 788899


Q ss_pred             ccchhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          174 KIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       174 ~~di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      +++||    |+.++++|+  +.++|||||+|||||+.|||||||||++|||||
T Consensus       169 ~~~I~----e~~i~~~L~--t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsEly  215 (253)
T 3sgv_B          169 PDQID----EEMLNQHVC--MHELAPVDLVIRTGGEHRISNFLLWQIAYAELY  215 (253)
T ss_dssp             GGGCC----HHHHHTTST--TTTSCCCCEEEEESSCCCCTTSCSGGGTTCEEE
T ss_pred             hhhCC----HHHHHHhhc--ccCCCCCcEEEEecCCCcccCchHHHHcCEEEE
Confidence            98876    566777777  678999999999999999999999999999986

>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1

Probab=100.00  E-value=5.9e-43  Score=302.55  Aligned_cols=156  Identities=22%  Similarity=0.338  Sum_probs=119.8

Q ss_pred             CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---H--------
Q 027207           64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---L--------  117 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~--------  117 (226)
                      .++|+|||||||||++     +         |++++.+++.||.++||++||+|+|| +|+|++.+++   |        
T Consensus        18 ~~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~   97 (249)
T 1f75_A           18 AQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLN   97 (249)
T ss_dssp             TTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHHHHH
T ss_pred             CCCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999952     1         79999999999999999999999985 8999987642   2        


Q ss_pred             HHhhh---cC----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          118 GKLNN---AT----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       118 ~~l~~---~~----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                      +.+++   .+          .+|..      .+...|+++++++|+++++||||+||++|+|++++++ ++|++++++||
T Consensus        98 ~~~~~l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v-~~g~l~~~~I~  176 (249)
T 1f75_A           98 TFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERY-KSGEISLDEIS  176 (249)
T ss_dssp             HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHH-HTTSSCGGGCS
T ss_pred             HHHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHhCC
Confidence            11111   11          13331      1234588999999999999999999999999998876 78889999877


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          |+.++++|+  +.++|||||+|||||+.|||||||||++|||||
T Consensus       177 ----e~~i~~~L~--t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysEly  218 (249)
T 1f75_A          177 ----ETHFNEYLF--TANMPDPELLIRTSGEERLSNFLIWQCSYSEFV  218 (249)
T ss_dssp             ----HHHHGGGST--TTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEE
T ss_pred             ----HHHHHHhhc--cCCCCCCcEEEEcCCCccccCCchhhhhceEEE
Confidence                455666766  678999999999999999999999999999986

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A

Probab=100.00  E-value=4.3e-42  Score=301.29  Aligned_cols=155  Identities=18%  Similarity=0.255  Sum_probs=128.7

Q ss_pred             CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHH---HHHHhh----h
Q 027207           65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN----N  122 (226)
Q Consensus        65 k~P~HlavI~d~~~~--------------~~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~---l~~~l~----~  122 (226)
                      ++|+|||||||||++              .|++++.+++.||.++||++||+|+|| +|+|++.++   ||+.+.    +
T Consensus        54 ~iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~L~~~~l~~  133 (284)
T 2vg3_A           54 RLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRR  133 (284)
T ss_dssp             TSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHH
Confidence            589999999999852              178999999999999999999999985 899999875   333221    1


Q ss_pred             -------c----------CCCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchhh
Q 027207          123 -------A----------TLFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK  179 (226)
Q Consensus       123 -------~----------~~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~~  179 (226)
                             .          ..+|..      .+...|+++++++|+++++||||+||++|+|++++++ ++|++++++|| 
T Consensus       134 ~~~~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v-~~g~l~~~dI~-  211 (284)
T 2vg3_A          134 RRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREV-AAGRLNPERIT-  211 (284)
T ss_dssp             HHHHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHH-HTTSSCGGGCC-
T ss_pred             HHHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHHCC-
Confidence                   1          123321      1334688999999999999999999999999998876 78899999877 


Q ss_pred             hhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       180 ~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                         |+.++++|+  +.++|||||+|||||+.|||||||||++|||||
T Consensus       212 ---e~~i~~~L~--t~~~PdPDLlIRTsGE~RLSnFLlWQ~aYsEly  253 (284)
T 2vg3_A          212 ---ESTIARHLQ--RPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYI  253 (284)
T ss_dssp             ---HHHHHHHSS--STTCCCCSEEEECTTCCCCTTTTTTTTTTCEEE
T ss_pred             ---HHHHHHHhc--cCCCCCCcEEEeCCCCccccCCCchhhcceEEE
Confidence               455667776  678999999999999999999999999999986

>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.7e-42  Score=297.36  Aligned_cols=156  Identities=16%  Similarity=0.269  Sum_probs=130.5

Q ss_pred             CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207           64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----  121 (226)
                      .++|+|||||||||++     +         |++++.+++.||.+.||++||+|+|| +|+|++.+++   |+.+.    
T Consensus        22 ~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~  101 (256)
T 4h8e_A           22 SNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLK  101 (256)
T ss_dssp             TCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999963     1         89999999999999999999999986 8999998763   32221    


Q ss_pred             ----h--cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 ----N--AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 ----~--~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                          .  .+           .+|..      .+...|+++++++++++.+||||+||++|+|++++++ ++|++++++||
T Consensus       102 ~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v-~~g~l~~~~I~  180 (256)
T 4h8e_A          102 TFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDEL-HQQGLNSDIID  180 (256)
T ss_dssp             HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHH-HHTTCCGGGCC
T ss_pred             HHHHHHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHH-HcCCCChhhCC
Confidence                1  11           23331      1345689999999999999999999999999998886 78889999876


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          |+.++++|+  +.+.|||||+|||||+.|+|||||||++|||||
T Consensus       181 ----e~~i~~~L~--t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsEly  222 (256)
T 4h8e_A          181 ----ETYINNHLM--TKDYPDPELLIRTSGEQRISNFLIWQVSYSEFI  222 (256)
T ss_dssp             ----HHHHHTTST--TTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEE
T ss_pred             ----HHHHHHhCC--CCCCCCCcEEEEcCCCCcccCchHHHHcCeEEE
Confidence                556777776  678999999999999999999999999999986

>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A

Probab=100.00  E-value=3.1e-42  Score=297.25  Aligned_cols=155  Identities=21%  Similarity=0.257  Sum_probs=118.6

Q ss_pred             CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHH---HHHHhh----
Q 027207           64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN----  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~---l~~~l~----  121 (226)
                      .++|+|||||||||++     +         |++++.+++.||.++||++||+|+|| +|+|++.++   ||+.+.    
T Consensus        13 ~~iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~   92 (245)
T 2d2r_A           13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK   92 (245)
T ss_dssp             -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence            4789999999999852     1         78999999999999999999999985 899998653   443221    


Q ss_pred             h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                      +      .+           .+|..      .+...|+++++++|+++++||||+||++|+|++++++ ++ +++++|||
T Consensus        93 ~~~~~l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v-~~-~l~~~~I~  170 (245)
T 2d2r_A           93 DERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESP-PS-NISLLESL  170 (245)
T ss_dssp             HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSC-CT-TGGGCSCC
T ss_pred             HHHHHHHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-Hh-cCChhhCC
Confidence            1      11           12321      1334688999999999999999999999999998775 44 77888876


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          |+.++++|+  +.++|||||+|||||+.|+|||||||++|||||
T Consensus       171 ----e~~i~~~L~--t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysEly  212 (245)
T 2d2r_A          171 ----ENEISNRLD--TRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELF  212 (245)
T ss_dssp             ----HHHHHTTST--TTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEE
T ss_pred             ----HHHHHHHhc--cCCCCCCcEEEEcCCCccccCCcchhhcceEEE
Confidence                555667776  678999999999999999999999999999986

>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*

Probab=100.00  E-value=1.2e-41  Score=294.58  Aligned_cols=155  Identities=17%  Similarity=0.238  Sum_probs=119.2

Q ss_pred             CCC----CeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHH---
Q 027207           65 DKL----RYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGK---  119 (226)
Q Consensus        65 k~P----~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~---  119 (226)
                      ++|    +|||||||||++     +         |++++.+++.||.++||++||+|+|| +|+|++.+++   ++.   
T Consensus        12 ~iP~~~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~Lm~l~~~   91 (253)
T 3qas_B           12 KLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVW   91 (253)
T ss_dssp             -CCTTCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-----------------CT
T ss_pred             CCCCCCCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHHHHHHHH
Confidence            578    999999999962     1         78999999999999999999999996 8999987653   321   


Q ss_pred             -----hh---hc----------CCCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 027207          120 -----LN---NA----------TLFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI  175 (226)
Q Consensus       120 -----l~---~~----------~~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~  175 (226)
                           ++   +.          ..+|..      .+...|+++++++|+++++||||+||++|+|++++++ ++|+++++
T Consensus        92 ~l~~~~~~l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~~v-~~g~l~~~  170 (253)
T 3qas_B           92 ALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQPD  170 (253)
T ss_dssp             HHHHHHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH-HTTSCCGG
T ss_pred             HHHHHHHHHHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChH
Confidence                 11   11          123331      1234688999999999999999999999999998876 78889999


Q ss_pred             chhhhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       176 di~~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                      +||    |+.++++|+  +.++|||||+|||||+.|+|||||||++|||||
T Consensus       171 ~I~----e~~i~~~L~--t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysEly  215 (253)
T 3qas_B          171 QID----EEMLNQHVC--MHELAPVDLVIRTGGEHRISNFLLWQIAYAELY  215 (253)
T ss_dssp             GCC----HHHHHTTST--TTTSCCCCEEEECSSCCCCTTSCSGGGTTCEEE
T ss_pred             HCC----HHHHHHhhc--cCCCCCCcEEEEcCCCccccCCchhhhcCEEEE
Confidence            877    455667776  678999999999999999999999999999986

>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0

Probab=100.00  E-value=9.5e-40  Score=277.57  Aligned_cols=147  Identities=17%  Similarity=0.303  Sum_probs=119.7

Q ss_pred             CCCCCeEEEEeeCCCC-----------C---ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHhh----
Q 027207           64 IDKLRYLAIVIESEEA-----------Y---HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKLN----  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----------~---~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l~----  121 (226)
                      +++|+|||||||||++           |   |++++.+++.||.+.||++||+|+|| +|+|++.+++   |+.+.    
T Consensus         4 m~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~   83 (225)
T 3ugs_B            4 MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLD   83 (225)
T ss_dssp             CCCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHH
Confidence            5789999999999974           1   89999999999999999999999986 8999998763   33221    


Q ss_pred             h------cC-----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 N------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 ~------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                      +      .+           .+|..      .+...|+++++++++++.+||||+||++|+|+++    +.|    ++||
T Consensus        84 ~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv----~~g----~~I~  155 (225)
T 3ugs_B           84 EALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVI----EKK----LELN  155 (225)
T ss_dssp             HHHHHSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHH----HTT----CCCS
T ss_pred             HHHHHHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHH----Hhc----CcCC
Confidence            1      11           13321      1335689999999999999999999999999983    444    4555


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          |+.++++|+  +.  |||||+|||||+.|+|||||||++|||||
T Consensus       156 ----e~~i~~~L~--t~--PdpDLlIRTsGE~RLSnFLLWQ~aYsEly  195 (225)
T 3ugs_B          156 ----EENLTQNLD--LP--LDVDLMLRVGNAKRLSNFLLWQCSYAEIY  195 (225)
T ss_dssp             ----HHHHHHTSS--SC--SCCSEEEEESSCCSCTTSSTTTTTTCEEE
T ss_pred             ----HHHHHHhcC--CC--CCCCEEEEeCCcccccCcchhhhhceEEE
Confidence                666778776  33  99999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1ueha_	228	Undecaprenyl diphosphate synthase {Escherichia col	100.0
d1f75a_	229	Undecaprenyl diphosphate synthase {Micrococcus lut	100.0

>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8e-41  Score=284.27  Aligned_cols=156  Identities=17%  Similarity=0.246  Sum_probs=121.0

Q ss_pred             CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHH----hh
Q 027207           64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGK----LN  121 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~----l~  121 (226)
                      ...|+|||||||||++     +         |++++.+++.||.+.||++||+|+|| +|++|..+++   ++.    +.
T Consensus         3 ~~~P~HiaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm~l~~~~l~   82 (228)
T d1ueha_           3 AHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALD   82 (228)
T ss_dssp             TTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHHHHHH
T ss_pred             CCCCCEEEEeccCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCcEEEeehhhhhhcccccchhHHHHHHHHHHHH
Confidence            4679999999999963     1         89999999999999999999999996 8999987753   222    11


Q ss_pred             -------hc----------CCCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          122 -------NA----------TLFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       122 -------~~----------~~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                             +.          ..+|..      ..+..|+++++++|++|.+||||+||++|++++++++ ++|++.+++|+
T Consensus        83 ~~~~~~~~~~i~i~~iG~~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~i~  161 (228)
T d1ueha_          83 SEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV-QQGNLQPDQID  161 (228)
T ss_dssp             HTHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHH-HTTSCCGGGCC
T ss_pred             HhHHHHHhccEEEEEECCcchhhhhhhhhhhhHHHhccCCCCceEEEEeccccchHHHHHHHHHHHHH-HhCCCCHhHhh
Confidence                   11          123321      1335688999999999999999999999999998886 88889998877


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          ++.+.++|+  +++.|||||+|||||+.|||||||||++|||||
T Consensus       162 ----~~~~~~~l~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~aysEl~  203 (228)
T d1ueha_         162 ----EEMLNQHVC--MHELAPVDLVIRTGGEHRISNFLLWQIAYAELY  203 (228)
T ss_dssp             ----HHHHHTTST--TTTSCCCCEEEECSSCCSCTTSSCGGGTTCEEE
T ss_pred             ----hhheecccc--cCCCCCCcEEEecCCceeccccchhcccceeEE
Confidence                455666666  678999999999999999999999999999986

>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]}

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Micrococcus luteus [TaxId: 1270]

Probab=100.00  E-value=1.4e-40  Score=282.93  Aligned_cols=156  Identities=21%  Similarity=0.327  Sum_probs=120.1

Q ss_pred             CCCCCeEEEEeeCCCC-----C---------ChHHHHHHHHHHHhcCCCEEEEEecC-CcccccHHHH---HHHh-----
Q 027207           64 IDKLRYLAIVIESEEA-----Y---------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI---LGKL-----  120 (226)
Q Consensus        64 ~k~P~HlavI~d~~~~-----~---------~~~~l~~l~~W~~~~GI~~lslYd~s-g~lk~~~~~l---~~~l-----  120 (226)
                      .++|+|||||||||++     +         |++.+.+++.||.+.||++||+|+|| +|+||+.+++   ++.+     
T Consensus         5 ~~lP~HvAiImDGNrRwAk~~g~~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafSteN~~R~~~Ev~~Lm~l~~~~l~   84 (229)
T d1f75a_           5 AQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLN   84 (229)
T ss_dssp             TTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHHHHH
T ss_pred             cCCCCeEEEeccCcHHHHHHCCCChhHHHHHHHHHHHHHHHHHHhcCCceEEEeeehhhhcccchHHHHHHHHHHHHHHH
Confidence            3689999999999963     1         89999999999999999999999987 8999987653   2111     


Q ss_pred             ---h---hcC----------CCCch------hhhhhhcCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccchh
Q 027207          121 ---N---NAT----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE  178 (226)
Q Consensus       121 ---~---~~~----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~e~~~~~~~~~~di~  178 (226)
                         +   +.+          .+|..      ..+..|+++++++++++.+||||+||++|++.++.++ ..|+..+++|+
T Consensus        85 ~~~~~~~~~~iri~~iG~~~~lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~i~~~~-~~~~~~~~~i~  163 (229)
T d1f75a_          85 TFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERY-KSGEISLDEIS  163 (229)
T ss_dssp             HHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHH-HTTSSCGGGCS
T ss_pred             HHhhhhhhhcccchhhhhhhhhhHHHHHHHHHHHHHhcCCCCeEEEEeccCcchhhHHHHHHHHHhhh-cccccchhhhh
Confidence               1   111          23321      1335688999999999999999999999999998775 78888888876


Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCcEEEEeCCCcccCCCchhhhhhcccC
Q 027207          179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIV  226 (226)
Q Consensus       179 ~~l~e~~l~~~L~~~~~~~pePDLlI~~G~~~rLsgF~pWqiryTEi~  226 (226)
                          ++.++++|+  +++.|||||+|||||+.||||||+||++|||||
T Consensus       164 ----e~~~~~~L~--t~~~PdpDLlIRTsGe~RLSnFLLWQ~aYsEl~  205 (229)
T d1f75a_         164 ----ETHFNEYLF--TANMPDPELLIRTSGEERLSNFLIWQCSYSEFV  205 (229)
T ss_dssp             ----HHHHGGGST--TTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEE
T ss_pred             ----HhhHHHhcC--CCCCCCcceEEecCCccccccchhhhhcceEEE
Confidence                556667776  678999999999999999999999999999986