Citrus Sinensis ID: 027255

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS
Secondary Structure (PSIPRED)
ccEEEEccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHccccccccHHHHHHcccEEEEEcccHHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHHHHccccEEEccccccHHHHHcccEEEEEcccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccHccHHHHHHHHHcccEEEEEcccHHHHHHHHHccccccccHHHHHHcccEEEEEEcccccHHEEEEcccccccccccccEEEEcccccHHHHHHHHHHHHHcccEEEcccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAhgatvggspaeVIKKCTITIGMLADPAAALSVVFdkggvleqicpgkgyidmstvdheTSIKISRAITskgghfleapvsgskqpaetGQLVILSAgekdlggianpmfkgkgptmlqsnyapafplkhqQKDMRLALAlgdenavsmPIAAAANEAFKKARslglgdndfSAVFEVVKDLKRSS
Flexible Loop (DISEMBL)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAhgatvggspaeVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFleapvsgskqpAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARslglgdndfSAVFEVVKDLKRSS
Low Complexity Region (SEG)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIaaaaneafkkaRSLGLGDNDFSAVFEVVKDLKRSS
Disordered region (IsUnstruct)
**VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF****************LVILSAG***LGGIA*****************************RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV*******
Disordered Region (DISOPRED)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV*KDL****
Disordered Region (DISEMBL)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS
Disordered Region (DISPRO)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q9LSV0	289	Glyoxylate/succinic semia	yes	no	0.663	0.519	0.786	4e-63
F4I907	358	Glyoxylate/succinic semia	no	no	0.663	0.418	0.533	4e-38
Q5RKN4	462	Putative oxidoreductase G	yes	no	0.641	0.313	0.496	7e-38
Q5RKH0	552	Putative oxidoreductase G	yes	no	0.685	0.280	0.496	8e-38
Q49A26	553	Putative oxidoreductase G	yes	no	0.685	0.280	0.496	8e-38
Q5ZLS7	553	Putative oxidoreductase G	yes	no	0.685	0.280	0.496	8e-38
A4FUF0	553	Putative oxidoreductase G	yes	no	0.685	0.280	0.496	9e-38
Q562D5	534	Putative oxidoreductase G	yes	no	0.570	0.241	0.539	3e-37
Q5R7T2	553	Putative oxidoreductase G	yes	no	0.685	0.280	0.483	2e-36
Q922P9	546	Putative oxidoreductase G	yes	no	0.659	0.272	0.483	6e-34

>sp|Q9LSV0|GLYR1_ARATH Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis thaliana GN=GLYR1 PE=1 SV=1

 Score =  241 bits (614), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 130/150 (86%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQL+IL+AG+K L   + P F
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAF 150

Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 1

>sp|F4I907|GLYR2_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GN=GLYR2 PE=1 SV=1

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 99/150 (66%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           + +GFLG+GIMG  ++ NL++ G  VTVWNRT SKCD LV  GA    SP EV   C +T
Sbjct: 67  VSIGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLT 126

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
             MLADP +A+ V   K G +  I  GKGY+D+STVD  +SI IS+ I   G  FLEAPV
Sbjct: 127 FAMLADPESAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPV 186

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQL+ L+AG+K L   A P  
Sbjct: 187 SGSKKPAEDGQLIFLTAGDKPLYEKAAPFL 216

Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 1

>sp|Q5RKN4|GLYR1_DANRE Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1

 Score =  157 bits (396), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
            +GFLGLG+MG  +  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 177 RIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITF 236

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             ++DP AA  +V    GVL+ I PGK Y++MSTVD ET  ++S+ ITS+GG FLEAPVS
Sbjct: 237 SCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVS 296

Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
           GS+Q +  G LVI++AG++ +    +  F+  G T
Sbjct: 297 GSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKT 331

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1

 Score =  157 bits (396), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 327

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct: 328 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 387

Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
           G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct: 388 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 422

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3

 Score =  157 bits (396), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
           G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 423

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1

 Score =  157 bits (396), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
           G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 423

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of MAPK14 and specifically regulating MAPK14 signaling.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1

 Score =  156 bits (395), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
           G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 423

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/139 (53%), Positives = 98/139 (70%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITF 309

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             +ADP AA  +V    GVL+ I PGK Y+DMSTVD ET  ++++ I S+GG FLEAPVS
Sbjct: 310 ACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVS 369

Query: 122 GSKQPAETGQLVILSAGEK 140
           G++Q +  G LVIL+AG++
Sbjct: 370 GNQQLSNDGMLVILAAGDQ 388

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 103/155 (66%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVW+RT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             ++DP AA  +V    GVL+ I P K Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
           G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 423

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q922P9|GLYR1_MOUSE Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1

 Score =  144 bits (362), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 101/155 (65%), Gaps = 6/155 (3%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  K       GA +G +PAEV+  C IT 
Sbjct: 268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITF 321

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct: 322 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 381

Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
           G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct: 382 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 416

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
15375068	289	gamma hydroxybutyrate dehydrogenase [Ara	0.663	0.519	0.786	2e-61
18404556	289	glyoxylate reductase 1 [Arabidopsis thal	0.663	0.519	0.786	2e-61
15146314	248	AT3g25530/MWL2_15 [Arabidopsis thaliana]	0.663	0.604	0.786	4e-61
251836884	310	Chain A, Structure Of Glyoxylate Reducta	0.663	0.483	0.786	4e-61
224129290	289	predicted protein [Populus trichocarpa]	0.663	0.519	0.793	9e-61
297835692	289	6-phosphogluconate dehydrogenase NAD-bin	0.663	0.519	0.78	1e-60
350538457	287	succinic semialdehyde reductase isofom1	0.659	0.519	0.765	8e-60
388503540	284	unknown [Medicago truncatula]	0.659	0.524	0.773	3e-58
225468850	291	PREDICTED: putative oxidoreductase GLYR1	0.663	0.515	0.76	5e-58
217073380	239	unknown [Medicago truncatula]	0.659	0.623	0.773	5e-58

>gi|15375068|gb|AAK94781.1| gamma hydroxybutyrate dehydrogenase [Arabidopsis thaliana]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 130/150 (86%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQL+IL+AG+K L   + P F
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAF 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404556|ref|NP_566768.1| glyoxylate reductase 1 [Arabidopsis thaliana] gi|75274028|sp|Q9LSV0.1|GLYR1_ARATH RecName: Full=Glyoxylate/succinic semialdehyde reductase 1; Short=AtGLYR1; Short=AtGR1; Short=SSA reductase 1; AltName: Full=Gamma-hydroxybutyrate dehydrogenase; Short=AtGHBDH gi|9279732|dbj|BAB01322.1| dehydrogenase-like protein [Arabidopsis thaliana] gi|90962980|gb|ABE02414.1| At3g25530 [Arabidopsis thaliana] gi|332643500|gb|AEE77021.1| glyoxylate reductase 1 [Arabidopsis thaliana]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 130/150 (86%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQL+IL+AG+K L   + P F
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAF 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15146314|gb|AAK83640.1| AT3g25530/MWL2_15 [Arabidopsis thaliana]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 130/150 (86%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQL+IL+AG+K L   + P F
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAF 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|251836884|pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1)

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 130/150 (86%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 22  MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 82  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQL+IL+AG+K L   + P F
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAF 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129290|ref|XP_002320548.1| predicted protein [Populus trichocarpa] gi|222861321|gb|EEE98863.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 119/150 (79%), Positives = 133/150 (88%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKC+ELV  GA++G +PA+V+KKC +T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCNELVEFGASIGETPAQVVKKCRLT 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DPAAALSVVFDK GVLEQI  GKGYIDMSTVD ETS KIS+AITSKGG FLEAPV
Sbjct: 61  IAMLSDPAAALSVVFDKDGVLEQIDSGKGYIDMSTVDPETSSKISQAITSKGGAFLEAPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSKQPAETGQLVIL+AG+K L   + P F
Sbjct: 121 SGSKQPAETGQLVILAAGDKGLYEESIPAF 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835692|ref|XP_002885728.1| 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331568|gb|EFH61987.1| 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/150 (78%), Positives = 131/150 (87%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL++GFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKHGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 61  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGWFVEGPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQL+IL+AG+K L   + P+F
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPVF 150

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538457|ref|NP_001233832.1| succinic semialdehyde reductase isofom1 [Solanum lycopersicum] gi|171854589|dbj|BAG16485.1| succinic semialdehyde reductase isofom1 [Solanum lycopersicum]

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 130/149 (87%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           E+GFLG+GIMGKA+++NLLR+GFKVTVWNRTLS+CDELV HGA+VG +PAEVIKKC  TI
Sbjct: 3   EIGFLGIGIMGKAMAVNLLRHGFKVTVWNRTLSRCDELVQHGASVGETPAEVIKKCKYTI 62

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
            ML+DPAAALSVVFDK G LE IC GKGYIDMSTVD +TS +IS+AITSKGG FLEAPVS
Sbjct: 63  AMLSDPAAALSVVFDKHGALEHICAGKGYIDMSTVDADTSSQISQAITSKGGSFLEAPVS 122

Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMF 150
           GSK+PAE GQLVIL+AG+KDL     P F
Sbjct: 123 GSKKPAEDGQLVILAAGDKDLYDQVVPAF 151

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503540|gb|AFK39836.1| unknown [Medicago truncatula]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/150 (77%), Positives = 129/150 (86%), Gaps = 1/150 (0%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           ME+GFLGLGIMGKA+S+NLLR+GFKVTVWNRTLSKCDELV HGA+VG +PA V+KKC  T
Sbjct: 1   MEIGFLGLGIMGKAMSINLLRHGFKVTVWNRTLSKCDELVEHGASVGETPAAVVKKCKYT 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DPAAAL+VVFDK GVLEQI  GKGYIDMSTVD ETSIKIS AI +KGG FLEAPV
Sbjct: 61  IAMLSDPAAALAVVFDKDGVLEQI-NGKGYIDMSTVDAETSIKISEAIKAKGGDFLEAPV 119

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQLVIL+AG+K     A P F
Sbjct: 120 SGSKKPAEDGQLVILAAGDKAFYDEALPAF 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468850|ref|XP_002266252.1| PREDICTED: putative oxidoreductase GLYR1 isoform 1 [Vitis vinifera] gi|147861759|emb|CAN78910.1| hypothetical protein VITISV_032948 [Vitis vinifera] gi|297736660|emb|CBI25677.3| unnamed protein product [Vitis vinifera]

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/150 (76%), Positives = 128/150 (85%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+S+NL+R+GFK+TVWNRTLSKCDELV  GA++G +PA V+KKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSINLIRSGFKLTVWNRTLSKCDELVELGASIGETPAAVVKKCNYT 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DP+ ALSVVFDK GVLEQIC GKGYIDMSTV  +TS KIS AITSKGG FLEAPV
Sbjct: 61  IAMLSDPSVALSVVFDKDGVLEQICHGKGYIDMSTVGADTSSKISEAITSKGGSFLEAPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQLVIL+AGEK L   A P F
Sbjct: 121 SGSKKPAEDGQLVILAAGEKALYDEAIPAF 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073380|gb|ACJ85049.1| unknown [Medicago truncatula]

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 116/150 (77%), Positives = 129/150 (86%), Gaps = 1/150 (0%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           ME+GFLGLGIMGKA+S+NLLR+GFKVTVWNRTLSKCDELV HGA+VG +PA V+KKC  T
Sbjct: 1   MEIGFLGLGIMGKAMSINLLRHGFKVTVWNRTLSKCDELVEHGASVGETPAAVVKKCKYT 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DPAAAL+VVFDK GVLEQI  GKGYIDMSTVD ETSIKIS AI +KGG FLEAPV
Sbjct: 61  IAMLSDPAAALAVVFDKDGVLEQIN-GKGYIDMSTVDAETSIKISEAIKAKGGDFLEAPV 119

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQLVIL+AG+K     A P F
Sbjct: 120 SGSKKPAEDGQLVILAAGDKAFYDEALPAF 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2094518	289	GLYR1 "glyoxylate reductase 1"	0.663	0.519	0.786	8.1e-87
TIGR_CMR|GSU_1372	286	GSU_1372 "3-hydroxyisobutyrate	0.685	0.541	0.6	2.9e-58
TAIR|locus:2007923	358	GLYR2 "glyoxylate reductase 2"	0.654	0.413	0.540	5.4e-55
ZFIN|ZDB-GENE-041121-5	508	glyr1 "glyoxylate reductase 1	0.681	0.303	0.5	1.3e-36
UNIPROTKB|F1NFS3	553	GLYR1 "Putative oxidoreductase	0.685	0.280	0.496	2.1e-36
UNIPROTKB|Q5ZLS7	553	GLYR1 "Putative oxidoreductase	0.685	0.280	0.496	2.1e-36
UNIPROTKB|A4FUF0	553	GLYR1 "Putative oxidoreductase	0.685	0.280	0.496	2.1e-36
UNIPROTKB|F1RK86	553	GLYR1 "Uncharacterized protein	0.685	0.280	0.496	2.1e-36
UNIPROTKB|I3LMN3	539	GLYR1 "Uncharacterized protein	0.685	0.287	0.496	2.1e-36
RGD|1309459	552	Glyr1 "glyoxylate reductase 1	0.685	0.280	0.496	2.1e-36

TAIR|locus:2094518 GLYR1 "glyoxylate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
 Identities = 118/150 (78%), Positives = 130/150 (86%)

Query:     1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
             MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct:     1 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query:    61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
             I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct:    61 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120

Query:   121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
             SGSK+PAE GQL+IL+AG+K L   + P F
Sbjct:   121 SGSKKPAEDGQLIILAAGDKALFEESIPAF 150

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0006573 "valine metabolic process" evidence=IEA

GO:0008442 "3-hydroxyisobutyrate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003858 "3-hydroxybutyrate dehydrogenase activity" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|GSU_1372 GSU_1372 "3-hydroxyisobutyrate dehydrogenase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 439 (159.6 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 93/155 (60%), Positives = 107/155 (69%)

Query:     4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
             GFLGLGIMG  ++ NL+R GF VTVWNR  +KC  LVA GA    SPAEV   C ITI M
Sbjct:     5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64

Query:    64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123
             LADPAAA  V F   GVLE I  G+GYIDMSTVD ETS  I  A+T++GG FLEAPVSG+
Sbjct:    65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124

Query:   124 KQPAETGQLVILSAGEKDLGGIANPMFKGKGPTML 158
             K+PAE G L+IL+AG++ L   A P F   G   L
Sbjct:   125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCL 159

GO:0009063 "cellular amino acid catabolic process" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=ISS

GO:0019577 "aldaric acid metabolic process" evidence=ISS

TAIR|locus:2007923 GLYR2 "glyoxylate reductase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 80/148 (54%), Positives = 99/148 (66%)

Query:     1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
             + +GFLG+GIMG  ++ NL++ G  VTVWNRT SKCD LV  GA    SP EV   C +T
Sbjct:    67 VSIGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLT 126

Query:    61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
               MLADP +A+ V   K G +  I  GKGY+D+STVD  +SI IS+ I   G  FLEAPV
Sbjct:   127 FAMLADPESAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPV 186

Query:   121 SGSKQPAETGQLVILSAGEKDLGGIANP 148
             SGSK+PAE GQL+ L+AG+K L   A P
Sbjct:   187 SGSKKPAEDGQLIFLTAGDKPLYEKAAP 214

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

ZFIN|ZDB-GENE-041121-5 glyr1 "glyoxylate reductase 1 homolog (Arabidopsis)" [Danio rerio (taxid:7955)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 77/154 (50%), Positives = 104/154 (67%)

Query:     3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
             +GFLGLG+MG  +  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT  
Sbjct:   224 IGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFS 283

Query:    63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
              ++DP AA  +V    GVL+ I PGK Y++MSTVD ET  ++S+ ITS+GG FLEAPVSG
Sbjct:   284 CVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSG 343

Query:   123 SKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
             S+Q +  G LVI++AG++ +    +  F+  G T
Sbjct:   344 SQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKT 377

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NFS3 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query:     2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
             ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct:   269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query:    62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
               ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct:   329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query:   122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
             G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct:   389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 423

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

UNIPROTKB|Q5ZLS7 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query:     2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
             ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct:   269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query:    62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
               ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct:   329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query:   122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
             G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct:   389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 423

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

UNIPROTKB|A4FUF0 GLYR1 "Putative oxidoreductase GLYR1" [Bos taurus (taxid:9913)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query:     2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
             ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct:   269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query:    62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
               ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct:   329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query:   122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
             G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct:   389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 423

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RK86 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query:     2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
             ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct:   269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query:    62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
               ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct:   329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query:   122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
             G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct:   389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 423

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LMN3 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query:     2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
             ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct:   255 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 314

Query:    62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
               ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct:   315 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 374

Query:   122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
             G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct:   375 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 409

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1309459 Glyr1 "glyoxylate reductase 1 homolog (Arabidopsis)" [Rattus norvegicus (taxid:10116)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query:     2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
             ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct:   268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 327

Query:    62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
               ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct:   328 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 387

Query:   122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
             G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct:   388 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 422

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISO;ISS

GO:0050662 "coenzyme binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSV0	GLYR1_ARATH	1, ., 1, ., 1, ., n, 1, 1	0.7866	0.6637	0.5190	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GLYR1	GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating); Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH). Contains a NADP-binding domain. GHBDH is proposed to function in oxidative stress tolerance. (289 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ALDH5F1	ALDH5F1; 3-chloroallyl aldehyde dehydrogenase/ NAD or NADH binding / succinate-semialdehyde deh [...] (528 aa)							•		0.880
	UBQ4	UBQ4; protein binding; encodes a ubiquitin polyprotein. ; Protein modifier which can be covalen [...] (382 aa)					•				0.762
	GAD5	GAD5 (glutamate decarboxylase 5); calmodulin binding; glutamate decarboxylase 5 (GAD5); FUNCTIO [...] (494 aa)							•		0.718
	POP2	POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase/ 4-aminobutyrate-pyruvate [...] (504 aa)							•		0.679
	GAD	GAD; calmodulin binding / glutamate decarboxylase; Encodes one of two isoforms of glutamate dec [...] (502 aa)							•		0.677
	NACA5	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5); NASCENT POLYPEPTID [...] (209 aa)				•					0.667
	FTSZ2-2	FTSZ2-2; GTP binding / GTPase/ structural molecule; Nuclear gene that encodes a plastidial divi [...] (473 aa)				•					0.633
	emb1473	emb1473 (embryo defective 1473); structural constituent of ribosome; embryo defective 1473 (emb [...] (241 aa)				•					0.623
	DXR	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE); 1-deoxy-D-xylulose-5-phosphate reductois [...] (477 aa)				•					0.615
	GDCST	aminomethyltransferase, putative; aminomethyltransferase, putative; FUNCTIONS IN- aminomethyltr [...] (408 aa)	•			•					0.599

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
pfam03446	163	pfam03446, NAD_binding_2, NAD binding domain of 6-	2e-45
COG2084	286	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase	2e-43
PRK11559	296	PRK11559, garR, tartronate semialdehyde reductase;	2e-33
TIGR01505	291	TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona	1e-27
TIGR01692	288	TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen	7e-19
PRK15059	292	PRK15059, PRK15059, tartronate semialdehyde reduct	2e-17
PRK15461	296	PRK15461, PRK15461, NADH-dependent gamma-hydroxybu	4e-17
COG2084	286	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase	1e-16
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	5e-16
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	1e-11
TIGR00873	467	TIGR00873, gnd, 6-phosphogluconate dehydrogenase (	2e-10
COG0362	473	COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca	6e-09
PTZ00142	470	PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena	5e-08
PRK09599	301	PRK09599, PRK09599, 6-phosphogluconate dehydrogena	5e-08
COG1023	300	COG1023, Gnd, Predicted 6-phosphogluconate dehydro	9e-08
PLN02350	493	PLN02350, PLN02350, phosphogluconate dehydrogenase	6e-07
PRK15461	296	PRK15461, PRK15461, NADH-dependent gamma-hydroxybu	7e-07
TIGR00872	298	TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena	7e-07
PRK09287	459	PRK09287, PRK09287, 6-phosphogluconate dehydrogena	2e-05
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	4e-05
TIGR01505	291	TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona	3e-04
PRK08655	437	PRK08655, PRK08655, prephenate dehydrogenase; Prov	0.003
PRK11559	296	PRK11559, garR, tartronate semialdehyde reductase;	0.004
PRK07680	273	PRK07680, PRK07680, late competence protein ComER;	0.004
PRK12490	299	PRK12490, PRK12490, 6-phosphogluconate dehydrogena	0.004

>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase

 Score =  147 bits (375), Expect = 2e-45
 Identities = 59/151 (39%), Positives = 93/151 (61%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            ++GF+GLG+MG  +++NLL+ G+ VTV+NRT  K +ELVA GA    SPAE +    + 
Sbjct: 1   AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVV 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I M+   AA  +V+  + G+L  + PG   ID ST D + + + ++ +  KG HFL+APV
Sbjct: 61  ITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAEKGIHFLDAPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SG ++ AE G L I+  G+++      P+ +
Sbjct: 121 SGGEEGAEAGTLSIMVGGDEEAFERVKPILE 151

The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163

>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

 Score =  146 bits (372), Expect = 2e-43
 Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTI 59
           M++ F+GLGIMG  ++ NLL+ G +VTV+NRT  K  + L A GATV  SPAE   +  +
Sbjct: 1   MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADV 60

Query: 60  TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119
            I ML D AA  +V+F + G+LE + PG   IDMST+  ET+ +++ A+ +KG  FL+AP
Sbjct: 61  VITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAP 120

Query: 120 VSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGP 155
           VSG    A  G L I+  G+ +    A P+ +  G 
Sbjct: 121 VSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGK 156

Length = 286

>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional

 Score =  121 bits (305), Expect = 2e-33
 Identities = 52/142 (36%), Positives = 82/142 (57%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M+VGF+GLGIMGK +S NLL+ G+ + V++R      E++A GA    +   V ++C + 
Sbjct: 3   MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVI 62

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML +      V   + G++E   PG   IDMS++    S +I+ A+ +KG   L+APV
Sbjct: 63  ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPV 122

Query: 121 SGSKQPAETGQLVILSAGEKDL 142
           SG +  A  G L ++  G+K +
Sbjct: 123 SGGEPKAIDGTLSVMVGGDKAI 144

Length = 296

>gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase

 Score =  106 bits (265), Expect = 1e-27
 Identities = 51/156 (32%), Positives = 86/156 (55%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           +VGF+GLGIMG  +S+NL + G+++ V        DEL+A GA    +  +V ++  +  
Sbjct: 1   KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIF 60

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
            M+ D      V F + G++E   PGK  +DMS++    S + ++A+  KG  +L+APVS
Sbjct: 61  TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS 120

Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTM 157
           G +  A  G L I+  G++ +     P+F+  G  +
Sbjct: 121 GGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNI 156

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291

>gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase

 Score = 82.5 bits (204), Expect = 7e-19
 Identities = 46/137 (33%), Positives = 69/137 (50%)

Query: 5   FLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML 64
           F+GLG MG  ++ NLL+ G  V V++      +E VA GA    SPAE  +     I ML
Sbjct: 1   FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60

Query: 65  ADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK 124
                 +SV     G+L ++  G   ID ST+D +++ K++    + G  F++APVSG  
Sbjct: 61  PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGV 120

Query: 125 QPAETGQLVILSAGEKD 141
             A  G L  +  G  +
Sbjct: 121 GGARAGTLTFMVGGVAE 137

3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288

>gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional

 Score = 78.5 bits (193), Expect = 2e-17
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M++GF+GLGIMG  +++NL R G ++ V        DEL++ GA    +  +V +   I 
Sbjct: 1   MKLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDII 59

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
             M+ D      V+F + G  +    GK  +DMS++    + + +R +   GG +L+APV
Sbjct: 60  FIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPV 119

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK--GKGPTMLQSN 161
           SG +  A  G L I+  G++ +     P+F+  GK  T++  N
Sbjct: 120 SGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGN 162

Length = 292

>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

 Score = 77.6 bits (191), Expect = 4e-17
 Identities = 45/136 (33%), Positives = 70/136 (51%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           + F+GLG MG  ++ NLL+ G ++ V++      D LV  GAT   SPA+        I 
Sbjct: 4   IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63

Query: 63  MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
           ML +     SV+F + GV E +      IDMST+    + K+   + +KG   ++ PV  
Sbjct: 64  MLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123

Query: 123 SKQPAETGQLVILSAG 138
           +   A TG L++L+ G
Sbjct: 124 TSDNAITGTLLLLAGG 139

Length = 296

>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 25/78 (32%), Positives = 44/78 (56%)

Query: 143 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 202
           G   + + +  GP ML+ +++P F +    KD+ LAL    E    +P+ A A E + KA
Sbjct: 209 GAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKA 268

Query: 203 RSLGLGDNDFSAVFEVVK 220
            + G G+ DFSA+ ++++
Sbjct: 269 AAAGGGEEDFSALIKLLE 286

Length = 286

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score = 76.4 bits (188), Expect = 5e-16
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVT---VWNRTLSKCDELVAHGATVGGSPAEVIKKCTI 59
           +GF+GLG MG  ++ +LL++ F V    V+  TL + +     G   G SPAEV K   +
Sbjct: 327 IGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENA---GGLAGNSPAEVAKDVDV 383

Query: 60  TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS--KGGHFLE 117
            + M+A+   A +V+F   G +  +  G   +  STV     I++ R + +  +    ++
Sbjct: 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443

Query: 118 APVSGSKQPAETGQLVILSAG 138
           APVSG  + A  G L I+++G
Sbjct: 444 APVSGGVKRAAMGTLTIMASG 464

Length = 1378

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 2/152 (1%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           VGF+GL  +   ++ +LLR+GFKV  +  +    ++    G     SPAE  K     + 
Sbjct: 7   VGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVV 66

Query: 63  MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--HFLEAPV 120
           +L+ P     V F   G  + +  G   +  ST+      K+ + +T +      ++A V
Sbjct: 67  VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYV 126

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFKG 152
           S        G+L+I+++G  D    A P    
Sbjct: 127 SKGMSDLLNGKLMIIASGRSDAITRAQPFLSA 158

Length = 1378

>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating)

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 18/160 (11%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGS--PAEVIKKCTI 59
           ++G +GL +MG  +++N+  +GF V+V+NRT  K DE +A     G     A  I++   
Sbjct: 1   DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLA-EHAKGKKIVGAYSIEE--- 56

Query: 60  TIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITS 110
            +  L  P   + +V  K G     V+ Q+ P    G   ID     +  + +  + + +
Sbjct: 57  FVQSLERPRKIMLMV--KAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA 114

Query: 111 KGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           KG  F+ + VSG ++ A  G   I+  G  +   +  P+F
Sbjct: 115 KGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIF 153

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467

>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 15/140 (10%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTI 59
            ++G +GL +MG  +++N+  +G+ V V+NRT  K DE +A         PA  I++   
Sbjct: 4   ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEE--- 60

Query: 60  TIGMLADPAAALSVVFDKGG-----VLEQICP--GKG--YIDMSTVDHETSIKISRAITS 110
            +  L  P   L +V  K G     V+EQ+ P   KG   ID     ++ +I+ ++ ++ 
Sbjct: 61  FVASLEKPRKILLMV--KAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSE 118

Query: 111 KGGHFLEAPVSGSKQPAETG 130
           KG  F+   VSG ++ A  G
Sbjct: 119 KGILFVGMGVSGGEEGARHG 138

Length = 473

>gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 16/40 (40%), Positives = 29/40 (72%)

Query: 2  EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41
          ++G +GL +MG+ +++N+   GFK++V+NRT  K +E V 
Sbjct: 3  DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVK 42

Length = 470

>gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed

 Score = 51.7 bits (125), Expect = 5e-08
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK 56
          M++G +GLG MG  ++  LLR G +V  ++R     + L   GAT   S  E++ K
Sbjct: 1  MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAK 56

Length = 301

>gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCT-- 58
           M++G +GLG MG  +   LL  G  V  ++   +  +EL   GAT   S  E++ K +  
Sbjct: 1   MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAP 60

Query: 59  -ITIGMLADPAAAL--SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115
            I   M+  PA  +  +V+ D   +L     G   ID    +++ S++ ++ +  KG HF
Sbjct: 61  RIVWLMV--PAGDITDAVIDDLAPLLS---AGDIVIDGGNSNYKDSLRRAKLLAEKGIHF 115

Query: 116 LEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           L+   SG    AE G  +++  G+++      P+FK
Sbjct: 116 LDVGTSGGVWGAERGYCLMI-GGDEEAVERLEPIFK 150

Length = 300

>gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating)

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 25/145 (17%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-------SPAEVI 54
            +G  GL +MG+ +++N+   GF ++V+NRT SK DE V      G         P + +
Sbjct: 8   RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFV 67

Query: 55  K-----KCTITIGMLADPA----AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKIS 105
                 +  I +     P      ALS   + G  +         ID     +E + +  
Sbjct: 68  LSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCI---------IDGGNEWYENTERRI 118

Query: 106 RAITSKGGHFLEAPVSGSKQPAETG 130
           +    KG  +L   VSG ++ A  G
Sbjct: 119 KEAAEKGLLYLGMGVSGGEEGARNG 143

Length = 493

>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 23/64 (35%), Positives = 41/64 (64%)

Query: 157 MLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVF 216
           +L+ + +PAF +    KD+ +AL + ++  V MP+ AA+ E + +AR+ G G  D+SA+ 
Sbjct: 224 VLKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAIL 283

Query: 217 EVVK 220
           E V+
Sbjct: 284 EQVR 287

Length = 296

>gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating)

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 12/160 (7%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTI- 59
           M++G +GLG MG  I   L + G     ++        +     T   +  E+ ++ +  
Sbjct: 1   MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAP 60

Query: 60  TIGMLADPAAALSVVFDKGGVLEQICP----GKGYIDMSTVDHETSIKISRAITSKGGHF 115
            +  +  P   +        VLE++ P    G   ID     ++ S++  + +  KG H 
Sbjct: 61  RVVWVMVPHGIVD------AVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHL 114

Query: 116 LEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGP 155
           L+   SG     E G   ++  G+ +    A P+F    P
Sbjct: 115 LDCGTSGGVWGRERGYCFMI-GGDGEAFARAEPLFADVAP 153

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298

>gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41
          MGK +++N+  +G+ V V+NRT  K DE +A
Sbjct: 1  MGKNLALNIASHGYTVAVYNRTPEKTDEFLA 31

Length = 459

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32
             VG LGLG +G A++  L   GF V+ W+R+
Sbjct: 133 RRVGVLGLGELGAAVARRLAALGFPVSGWSRS 164

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 143 GGIANP-MFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 201
           GG+A   + + KG  ++   + P F +   QKD+ LAL        ++P  A   E F  
Sbjct: 206 GGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNT 265

Query: 202 ARSLGLGDNDFSAVFEVVKDL 222
            R+ G G  D SA+ + ++ L
Sbjct: 266 LRANGGGQLDHSALVQALELL 286

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291

>gnl|CDD|236326 PRK08655, PRK08655, prephenate dehydrogenase; Provisional

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 30/150 (20%)

Query: 1   MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATVGGSPAEVIKKC 57
           M++  +G  G +GK  +  L   GF+V V  R   K  E VA   G        +  K  
Sbjct: 1   MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE-VAKELGVEYANDNIDAAKDA 59

Query: 58  TITIGMLADPAAALSV---VFDKGGVLEQICP--GKGYIDMSTVDHETSIKI--SRAI-- 108
            I I         +SV   V +   V++++ P   +G + M      TS+K     A+  
Sbjct: 60  DIVI---------ISVPINVTED--VIKEVAPHVKEGSLLMDV----TSVKERPVEAMEE 104

Query: 109 -TSKGGHFLEA-PVSGSKQPAETGQLVILS 136
              +G   L   P+ G + P+  GQ+VIL+
Sbjct: 105 YAPEGVEILPTHPMFGPRTPSLKGQVVILT 134

Length = 437

>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 143 GGIA-NPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 201
           GG+A + +   K P ++  N+ P F +    KD+  AL         +P+ AA  E  + 
Sbjct: 209 GGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQA 268

Query: 202 ARSLGLGDNDFSAV 215
            ++ GLG  D SA+
Sbjct: 269 LKADGLGTADHSAL 282

Length = 296

>gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAH--GATVGGSPAEVI 54
          M +GF+G G MG  +    L +G     ++T+ NRT +K   +     G  V  +  EVI
Sbjct: 1  MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVI 60

Query: 55 KKCTI 59
           +  +
Sbjct: 61 SQSDL 65

Length = 273

>gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC--- 57
           M++G +GLG MG  ++  L  +G +V  ++      D     G T   S  E++ K    
Sbjct: 1   MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAP 60

Query: 58  -TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116
            TI + M+       SV+ D   +L    PG   +D     ++  ++ +  +  +G H++
Sbjct: 61  RTIWV-MVPAGEVTESVIKDLYPLLS---PGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116

Query: 117 EAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGP 155
           +   SG       G   ++  G+K++     P+FK   P
Sbjct: 117 DCGTSGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAP 154

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	100.0
KOG0409	327	consensus Predicted dehydrogenase [General functio	100.0
PRK15059	292	tartronate semialdehyde reductase; Provisional	100.0
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	100.0
PLN02858	1378	fructose-bisphosphate aldolase	100.0
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	100.0
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	100.0
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	100.0
PLN02858	1378	fructose-bisphosphate aldolase	100.0
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	100.0
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	100.0
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	100.0
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	100.0
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.97
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.97
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.96
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.95
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.94
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.93
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.93
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.9
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.9
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.89
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.88
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.84
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.84
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.84
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.83
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.77
PLN02688	266	pyrroline-5-carboxylate reductase	99.75
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.74
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.74
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.74
PRK08507	275	prephenate dehydrogenase; Validated	99.74
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.73
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.72
PRK08655	437	prephenate dehydrogenase; Provisional	99.71
PRK07417	279	arogenate dehydrogenase; Reviewed	99.71
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	99.71
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.7
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.7
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.69
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.69
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.67
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.66
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.65
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.65
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.65
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.63
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.62
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.62
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.62
PRK07680	273	late competence protein ComER; Validated	99.62
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.61
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.61
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.6
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.58
PRK06545	359	prephenate dehydrogenase; Validated	99.58
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.58
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.57
PLN02712	667	arogenate dehydrogenase	99.57
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.56
PLN02256	304	arogenate dehydrogenase	99.56
PRK07574	385	formate dehydrogenase; Provisional	99.54
PLN03139	386	formate dehydrogenase; Provisional	99.53
PLN02712	667	arogenate dehydrogenase	99.51
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.51
PF14833	122	NAD_binding_11: NAD-binding of NADP-dependent 3-hy	99.51
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.51
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.5
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.5
PRK12480	330	D-lactate dehydrogenase; Provisional	99.49
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.48
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.47
PRK13243	333	glyoxylate reductase; Reviewed	99.47
PRK06436	303	glycerate dehydrogenase; Provisional	99.47
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.47
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.45
PRK08605	332	D-lactate dehydrogenase; Validated	99.44
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.43
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.43
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.42
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.42
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.42
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.41
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.41
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.4
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.36
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.36
PRK08818	370	prephenate dehydrogenase; Provisional	99.36
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.35
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.35
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.34
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.32
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.32
PLN02928	347	oxidoreductase family protein	99.3
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.29
PRK13304	265	L-aspartate dehydrogenase; Reviewed	99.29
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.28
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.28
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.26
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.26
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.24
PRK06141	314	ornithine cyclodeaminase; Validated	99.24
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.23
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.23
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.21
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.21
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.18
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.17
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.17
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.16
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	99.16
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.13
PRK06932	314	glycerate dehydrogenase; Provisional	99.12
PRK06487	317	glycerate dehydrogenase; Provisional	99.11
PLN02306	386	hydroxypyruvate reductase	99.09
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.09
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	99.07
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.07
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.05
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.04
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	99.03
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	99.03
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.0
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.92
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.91
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.87
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.87
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.85
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.85
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.84
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.84
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.83
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.82
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.82
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.82
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.81
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.81
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.79
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.78
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.77
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.77
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.76
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.76
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.75
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.74
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.73
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.71
PLN02494	477	adenosylhomocysteinase	98.71
PRK06444	197	prephenate dehydrogenase; Provisional	98.7
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	98.68
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	98.68
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.68
TIGR00036	266	dapB dihydrodipicolinate reductase.	98.68
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.68
PRK07340	304	ornithine cyclodeaminase; Validated	98.68
PRK06407	301	ornithine cyclodeaminase; Provisional	98.67
PRK06823	315	ornithine cyclodeaminase; Validated	98.65
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.65
PRK05225	487	ketol-acid reductoisomerase; Validated	98.64
PRK08618	325	ornithine cyclodeaminase; Validated	98.61
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	98.61
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.6
PLN00203	519	glutamyl-tRNA reductase	98.6
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.57
PRK11579	346	putative oxidoreductase; Provisional	98.57
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.57
PRK06046	326	alanine dehydrogenase; Validated	98.56
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.55
PRK08291	330	ectoine utilization protein EutC; Validated	98.52
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.52
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.51
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.51
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.49
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	98.49
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.48
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.48
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.44
PRK07589	346	ornithine cyclodeaminase; Validated	98.43
PRK10206	344	putative oxidoreductase; Provisional	98.42
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	98.42
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.42
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	98.41
PRK06223	307	malate dehydrogenase; Reviewed	98.41
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	98.4
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.4
PRK06349	426	homoserine dehydrogenase; Provisional	98.38
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.35
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.35
PRK06199	379	ornithine cyclodeaminase; Validated	98.35
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	98.33
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.33
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.32
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.32
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.31
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.3
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	98.29
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.27
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.24
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.24
PRK04148	134	hypothetical protein; Provisional	98.22
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.21
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	98.21
PTZ00117	319	malate dehydrogenase; Provisional	98.21
PRK08300	302	acetaldehyde dehydrogenase; Validated	98.2
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.2
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	98.19
PRK09496	453	trkA potassium transporter peripheral membrane com	98.18
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.18
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	98.16
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	98.15
PRK06270	341	homoserine dehydrogenase; Provisional	98.14
PRK10669	558	putative cation:proton antiport protein; Provision	98.12
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.12
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.11
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	98.08
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	98.07
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.05
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	98.04
PRK03659	601	glutathione-regulated potassium-efflux system prot	98.04
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.03
COG2910	211	Putative NADH-flavin reductase [General function p	98.02
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.99
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.98
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.98
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.97
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.92
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.92
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.89
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.88
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.87
PRK14982	340	acyl-ACP reductase; Provisional	97.87
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.85
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.85
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.83
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.82
PRK06392	326	homoserine dehydrogenase; Provisional	97.81
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	97.81
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.79
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.79
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	97.78
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.78
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.77
PRK08374	336	homoserine dehydrogenase; Provisional	97.76
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.75
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	97.74
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.74
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.74
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.73
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.72
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.72
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.72
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	97.72
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.71
CHL00194	317	ycf39 Ycf39; Provisional	97.7
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.7
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.67
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.66
PLN02383	344	aspartate semialdehyde dehydrogenase	97.66
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.64
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.64
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.62
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.61
PRK09496	453	trkA potassium transporter peripheral membrane com	97.61
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.61
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.6
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.59
PRK15076	431	alpha-galactosidase; Provisional	97.58
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.58
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.58
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.58
PRK08328	231	hypothetical protein; Provisional	97.58
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.58
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.56
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.53
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.53
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.51
PRK05086	312	malate dehydrogenase; Provisional	97.5
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.5
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.49
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.48
PRK08223	287	hypothetical protein; Validated	97.48
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.47
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.45
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.44
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.44
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.44
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.43
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.42
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.41
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.4
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	97.39
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	97.39
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.38
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.38
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	97.35
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.35
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.35
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.35
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.35
PLN02602	350	lactate dehydrogenase	97.35
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	97.34
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.34
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.33
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.33
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	97.32
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	97.32
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.31
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	97.31
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	97.31
PLN02477	410	glutamate dehydrogenase	97.3
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.3
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	97.3
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	97.28
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.27
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.27
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	97.26
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.24
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	97.24
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.24
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	97.24
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.22
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.22
PRK05442	326	malate dehydrogenase; Provisional	97.21
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.21
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.21
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.2
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	97.2
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.2
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.2
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.19
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.16
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.16
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.15
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.14
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.13
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.13
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.12
PRK09414	445	glutamate dehydrogenase; Provisional	97.11
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.11
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.11
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	97.1
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.1
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.1
PLN03209	576	translocon at the inner envelope of chloroplast su	97.08
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.08
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.07
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.06
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.04
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.04
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.03
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.03
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	97.03
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.02
PLN00106	323	malate dehydrogenase	97.01
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.99
PRK14851	679	hypothetical protein; Provisional	96.97
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.96
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.93
PRK06813	346	homoserine dehydrogenase; Validated	96.93
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.93
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.92
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	96.92
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.92
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.91
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.9
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.9
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.88
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.86
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.85
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.84
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.84
COG2344	211	AT-rich DNA-binding protein [General function pred	96.83
PRK14852	989	hypothetical protein; Provisional	96.82
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.82
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	96.81
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	96.81
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.81
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.8
PRK07411	390	hypothetical protein; Validated	96.79
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	96.77
PRK08309	177	short chain dehydrogenase; Provisional	96.77
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.76
PRK14030	445	glutamate dehydrogenase; Provisional	96.76
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.75
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.71
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	96.68
PRK10538	248	malonic semialdehyde reductase; Provisional	96.67
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.67
PRK14031	444	glutamate dehydrogenase; Provisional	96.66
PLN02427	386	UDP-apiose/xylose synthase	96.65
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.64
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.63
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	96.62
PTZ00325	321	malate dehydrogenase; Provisional	96.61
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.61
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.56
COG5495	289	Uncharacterized conserved protein [Function unknow	96.55
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.54
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.53
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	96.53
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.53
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.52
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.52
PLN02775	286	Probable dihydrodipicolinate reductase	96.5
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	96.46
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.46
PRK06182	273	short chain dehydrogenase; Validated	96.46
PRK05865	854	hypothetical protein; Provisional	96.46
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.44
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.44
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	96.44
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.43
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	96.43
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.42
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.42
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.41
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.4
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	96.38
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.35
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.35
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	96.34
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	96.31
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.29
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	96.29
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	96.28
PRK06180	277	short chain dehydrogenase; Provisional	96.28
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	96.27
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.26
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.26
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	96.25
PRK06153	393	hypothetical protein; Provisional	96.25
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	96.25
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	96.25
PRK08017	256	oxidoreductase; Provisional	96.25
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	96.24
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.23
COG1832	140	Predicted CoA-binding protein [General function pr	96.23
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.22
PRK05693	274	short chain dehydrogenase; Provisional	96.22
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.21
PRK06753	373	hypothetical protein; Provisional	96.21
PRK10537	393	voltage-gated potassium channel; Provisional	96.2
PRK05993	277	short chain dehydrogenase; Provisional	96.2
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	96.18
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.17
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.16
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	96.16
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.15
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.13
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	96.11
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	96.1
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.09
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.08
PLN00016	378	RNA-binding protein; Provisional	96.08
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.06
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.06
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	96.06
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.05
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.05
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.05
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.05
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.05
PRK12939	250	short chain dehydrogenase; Provisional	96.03
PRK12828	239	short chain dehydrogenase; Provisional	96.03
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.03
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.03
PRK07877	722	hypothetical protein; Provisional	96.03
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.02
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.02
PRK05866	293	short chain dehydrogenase; Provisional	96.01
PRK07326	237	short chain dehydrogenase; Provisional	96.0
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.0
PRK05884	223	short chain dehydrogenase; Provisional	96.0
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	95.99
PRK07454	241	short chain dehydrogenase; Provisional	95.98
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	95.98
PRK07825	273	short chain dehydrogenase; Provisional	95.97
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	95.96
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.95
PRK12829	264	short chain dehydrogenase; Provisional	95.93
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.92
PLN02214	342	cinnamoyl-CoA reductase	95.92
PRK06057	255	short chain dehydrogenase; Provisional	95.91
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.9
PRK07774	250	short chain dehydrogenase; Provisional	95.89
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.87
PLN02650	351	dihydroflavonol-4-reductase	95.87
PRK12320	699	hypothetical protein; Provisional	95.87
PLN02740	381	Alcohol dehydrogenase-like	95.85
PRK08265	261	short chain dehydrogenase; Provisional	95.85
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.84
PRK07538	413	hypothetical protein; Provisional	95.84
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.83
PRK06139	330	short chain dehydrogenase; Provisional	95.82
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	95.81
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.81

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=1.6e-55  Score=365.04  Aligned_cols=220  Identities=40%  Similarity=0.667  Sum_probs=213.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |||+|||+|.||.+||+||.++||+|++|||++++ .+.+...|+..+.++.|+++++|+||+|+|++.++++|++|+++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            68999999999999999999999999999999999 66677779999999999999999999999999999999999999


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-------------------
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-------------------  140 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-------------------  140 (226)
                      +.+.+++|+++|||||++|..++++++.++++|+.|+|+||+|++..+++|+|++|+||++                   
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~  160 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH  160 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence            9999999999999999999999999999999999999999999999999999999999998                   


Q ss_pred             ----------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHH
Q 027255          141 ----------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD  174 (226)
Q Consensus       141 ----------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd  174 (226)
                                                                    ..++..||+++.+.++|++++|+|+|+++++.||
T Consensus       161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD  240 (286)
T COG2084         161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD  240 (286)
T ss_pred             ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence                                                          4567899999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 027255          175 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  220 (226)
Q Consensus       175 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~  220 (226)
                      ++++++++++.|+++|+++++.++|+.+.+.|+|++|++++++.++
T Consensus       241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~  286 (286)
T COG2084         241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE  286 (286)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence            9999999999999999999999999999999999999999999874

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=100.00  E-value=2.3e-53  Score=346.84  Aligned_cols=225  Identities=43%  Similarity=0.747  Sum_probs=218.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|+||++|+.||.++||.|++|||+.+++++|++.|++++.+|.|+++.+|+||+|+|++.+++++++|+.++
T Consensus        36 ~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gv  115 (327)
T KOG0409|consen   36 TRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGV  115 (327)
T ss_pred             ceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcEE-EecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-------------------
Q 027255           81 LEQICPGKGY-IDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-------------------  140 (226)
Q Consensus        81 ~~~l~~g~iv-vd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-------------------  140 (226)
                      ++.++++... ||+||++|.++++|++.+..++.+|+|+||+|+..+|++|+|+||+|||+                   
T Consensus       116 l~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~  195 (327)
T KOG0409|consen  116 LSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF  195 (327)
T ss_pred             eeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEE
Confidence            9999999887 99999999999999999999999999999999999999999999999998                   


Q ss_pred             ----------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHH
Q 027255          141 ----------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD  174 (226)
Q Consensus       141 ----------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd  174 (226)
                                                                    +.|..+|+++.++.|.|..++|.|+|.++++.||
T Consensus       196 ~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KD  275 (327)
T KOG0409|consen  196 LGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKD  275 (327)
T ss_pred             ecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHH
Confidence                                                          5688899999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccC
Q 027255          175 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRS  225 (226)
Q Consensus       175 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~  225 (226)
                      ++++.+.++..+.|+|+...++|+|+.+.+.|+|+.||+++|+.+++.+..
T Consensus       276 Lgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~  326 (327)
T KOG0409|consen  276 LGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI  326 (327)
T ss_pred             HHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999876543

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=100.00  E-value=6.5e-47  Score=319.33  Aligned_cols=222  Identities=29%  Similarity=0.493  Sum_probs=209.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||||||+|.||.+||++|.++||+|++|||++. .+++.+.|+..+.++.++++++|+||+|+|++.+++++++++.++
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~   79 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC   79 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence            7999999999999999999999999999999985 577888899889999999999999999999999999999887788


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.+.+|++|||+||++|.+++++++.+.++|+.|+|+||+|++.+++.|++++|+||++                    
T Consensus        80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~  159 (292)
T PRK15059         80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV  159 (292)
T ss_pred             hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence            888889999999999999999999999999999999999999999999999999999997                    


Q ss_pred             ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  175 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  175 (226)
                                                                   ..+.+.|++++.+.+++.+++|.++|+++++.||+
T Consensus       160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl  239 (292)
T PRK15059        160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL  239 (292)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence                                                         34567789999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      +++++++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..
T Consensus       240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~  287 (292)
T PRK15059        240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMA  287 (292)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998754

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=100.00  E-value=5e-45  Score=308.80  Aligned_cols=222  Identities=32%  Similarity=0.513  Sum_probs=206.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|+|||+|.||.+||++|+++||+|++|||++++.+++.+.|+..+.++.++++++|+||+|+|++.+++.++++.+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            38999999999999999999999999999999999999999999889999999999999999999988899999877788


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.+++++++||+||+.|...+++++.+.++|+.|+|+||+|++..++.|++++|+||++                    
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~  161 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA  161 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence            888889999999999999999999999999999999999999999999999999999987                    


Q ss_pred             ---------------------------------------------CCCCCcchhhccccc-ccccCcccCCccchHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD  174 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd  174 (226)
                                                                   ..+...++++..+.+ ++.+++|.++|+++++.||
T Consensus       162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD  241 (296)
T PRK15461        162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD  241 (296)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence                                                         233445566665554 8899999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255          175 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  222 (226)
Q Consensus       175 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  222 (226)
                      ++++++++++.|+++|+.++++++|+.+.++|+|++|++++++++++.
T Consensus       242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  289 (296)
T PRK15461        242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVS  289 (296)
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998763

>PLN02858 fructose-bisphosphate aldolase

Probab=100.00  E-value=5.3e-44  Score=348.95  Aligned_cols=222  Identities=22%  Similarity=0.328  Sum_probs=214.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      .+|||||+|.||.+||+||+++||+|++|||++++.+++.+.|+..++|+.+++++||+||+|+|++.+++++++|++++
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~   84 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA   84 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcC--CcEEecCCCCChHhhccCcEEEEeccCC------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG--GHFLEAPVSGSKQPAETGQLVILSAGEK------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g--~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------------  140 (226)
                      .+.+.+|++|||+||++|..++++++.+.++|  +.|+|+||+|++..|+.|++++|+||++                  
T Consensus        85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~  164 (1378)
T PLN02858         85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY  164 (1378)
T ss_pred             HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence            99999999999999999999999999999999  9999999999999999999999999998                  


Q ss_pred             ------------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHH
Q 027255          141 ------------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ  172 (226)
Q Consensus       141 ------------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  172 (226)
                                                                      +.+++.||+++.+.++++.++|.++|++++++
T Consensus       165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~  244 (1378)
T PLN02858        165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV  244 (1378)
T ss_pred             EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHH
Confidence                                                            45678899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255          173 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  222 (226)
Q Consensus       173 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  222 (226)
                      ||+++++++|++.|+++|+++.++++|+.+.+.|+|++|++++++++++.
T Consensus       245 KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~  294 (1378)
T PLN02858        245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKV  294 (1378)
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999763

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=100.00  E-value=2.5e-43  Score=297.44  Aligned_cols=216  Identities=29%  Similarity=0.433  Sum_probs=200.1

Q ss_pred             EEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccccccc
Q 027255            5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQI   84 (226)
Q Consensus         5 vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l   84 (226)
                      |||+|.||.+||++|.++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.++++++++++++.+.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            69999999999999999999999999999999999999998899999999999999999999889999998888888888


Q ss_pred             CCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC------------------------
Q 027255           85 CPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK------------------------  140 (226)
Q Consensus        85 ~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------------------  140 (226)
                      ++++++||+||++|...+++++.+.++|+.|+|+||+|++..++.|++++|+||++                        
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g  160 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG  160 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence            89999999999999999999999999999999999999999999999999999988                        


Q ss_pred             -----------------------------------------CCCCCcchhhccccc-------ccccCcccCCccchHHH
Q 027255          141 -----------------------------------------DLGGIANPMFKGKGP-------TMLQSNYAPAFPLKHQQ  172 (226)
Q Consensus       141 -----------------------------------------~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~  172 (226)
                                                               ..+.+.++++..+.+       .+.+++|.++|++++++
T Consensus       161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  240 (288)
T TIGR01692       161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML  240 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence                                                     334555666655443       34679999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 027255          173 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  220 (226)
Q Consensus       173 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~  220 (226)
                      ||++++.+++++.|+++|+.+++.++|+.+.++|+|++|+++++++++
T Consensus       241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~  288 (288)
T TIGR01692       241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR  288 (288)
T ss_pred             hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHhC
Confidence            999999999999999999999999999999999999999999999763

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=100.00  E-value=1.1e-41  Score=287.87  Aligned_cols=221  Identities=32%  Similarity=0.544  Sum_probs=207.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL   81 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~   81 (226)
                      ||||||+|.||.+||++|+++||+|++|||++++.+.+.+.|...+.++.++++++|+||+|+|++.+++.++++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            69999999999999999999999999999999999999999998888999999999999999999889999987766677


Q ss_pred             cccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC---------------------
Q 027255           82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK---------------------  140 (226)
Q Consensus        82 ~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~---------------------  140 (226)
                      +.++++++|||+||+.|.+.+++.+.++++|++|+|+|++|++..+..|++.+|+||++                     
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g  160 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG  160 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence            77889999999999999999999999999999999999999999999999999999987                     


Q ss_pred             --------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHHH
Q 027255          141 --------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR  176 (226)
Q Consensus       141 --------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  176 (226)
                                                                  ..+...+++++.+.+++.+++|.++|+++++.||++
T Consensus       161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~  240 (291)
T TIGR01505       161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN  240 (291)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence                                                        234557788888888999999999999999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255          177 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  222 (226)
Q Consensus       177 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  222 (226)
                      ++++++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++.
T Consensus       241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~  286 (291)
T TIGR01505       241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL  286 (291)
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999764

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=100.00  E-value=1.7e-41  Score=287.35  Aligned_cols=222  Identities=33%  Similarity=0.567  Sum_probs=207.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|+|||+|.||.+||++|+++|++|++|||++++.+.+.+.|+..+.+++++++++|+||+|+|++.+++.++++.+++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            68999999999999999999999999999999999999998898888999999999999999999989999998776678


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++|||+||+.|...+++.+.+.++|++|+|+||+|+++.+..|++.+|+||++                    
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~  162 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  162 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence            888889999999999999999999999999999999999999999999999999999986                    


Q ss_pred             ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  175 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  175 (226)
                                                                   ..+...+++++.+.+++.+++|.++|+++++.||+
T Consensus       163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl  242 (296)
T PRK11559        163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL  242 (296)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence                                                         23455677788888889999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255          176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  222 (226)
Q Consensus       176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  222 (226)
                      +++++++++.|+++|+++.++++|+.+.+.|+|++|++++++++++.
T Consensus       243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~  289 (296)
T PRK11559        243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKL  289 (296)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999764

>PLN02858 fructose-bisphosphate aldolase

Probab=100.00  E-value=2.7e-41  Score=329.99  Aligned_cols=222  Identities=28%  Similarity=0.448  Sum_probs=211.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||.+||++|+++||+|++|||++++.+.+...|+..+.++.+++++||+||+|+|++.+++++++++.++
T Consensus       325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~  404 (1378)
T PLN02858        325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGA  404 (1378)
T ss_pred             CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhH
Confidence            47999999999999999999999999999999999999999998889999999999999999999999999999988888


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHh--cCCcEEecCCCCChHhhccCcEEEEeccCC------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITS--KGGHFLEAPVSGSKQPAETGQLVILSAGEK------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~--~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------------  140 (226)
                      .+.+.+|++|||+||++|..++++++.+.+  +|+.|+|+||+|++..++.|++++|+||++                  
T Consensus       405 ~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~  484 (1378)
T PLN02858        405 VSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY  484 (1378)
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEE
Confidence            888899999999999999999999999999  899999999999999999999999999997                  


Q ss_pred             ------------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHH
Q 027255          141 ------------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ  172 (226)
Q Consensus       141 ------------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  172 (226)
                                                                      ..+++.||+++.+.+++++++|.++|+++++.
T Consensus       485 ~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~  564 (1378)
T PLN02858        485 VIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFV  564 (1378)
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHH
Confidence                                                            34567788899999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255          173 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  222 (226)
Q Consensus       173 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  222 (226)
                      ||++++++++++.|+|+|++.+++++|+.+.++|+|++|++++++++++.
T Consensus       565 KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~  614 (1378)
T PLN02858        565 KDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETL  614 (1378)
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999763

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=100.00  E-value=5.9e-37  Score=272.66  Aligned_cols=201  Identities=21%  Similarity=0.309  Sum_probs=179.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCc---ccCCHHHHhhh---CCeEEEecCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GAT---VGGSPAEVIKK---CTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~---~~~s~~~~~~~---advvi~~~p~~~~~   70 (226)
                      ++|||||+|.||.+||+||+++||+|++|||++++++.+.+.    |+.   .+.+++++++.   +|+||+|+|+++++
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            479999999999999999999999999999999999998764    544   67899999986   99999999999999


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC----------
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK----------  140 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~----------  140 (226)
                      ++++   +++++.+.+|++|||+||+.|.+++++++.++++|++|+|+||+|++.+|+.|+ ++|+||++          
T Consensus        87 ~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL  162 (493)
T PLN02350         87 DQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDIL  162 (493)
T ss_pred             HHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHH
Confidence            9999   788899999999999999999999999999999999999999999999999999 89999997          


Q ss_pred             -----------------------------------------------------------------CCCCCcchhhccccc
Q 027255          141 -----------------------------------------------------------------DLGGIANPMFKGKGP  155 (226)
Q Consensus       141 -----------------------------------------------------------------~~~~~~s~~~~~~~~  155 (226)
                                                                                       +.+...|++++...+
T Consensus       163 ~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~  242 (493)
T PLN02350        163 EKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITAD  242 (493)
T ss_pred             HHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHH
Confidence                                                                             233455666666667


Q ss_pred             ccccCc-ccCCccchHHHHHHH------HHHHHHhhcCCCchH-HHHHHHHHHHHHHc
Q 027255          156 TMLQSN-YAPAFPLKHQQKDMR------LALALGDENAVSMPI-AAAANEAFKKARSL  205 (226)
Q Consensus       156 ~~~~~~-~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~a~~~  205 (226)
                      .+..++ |.++|.++++.||++      .+.+.|.++|+|+|+ .+++...|......
T Consensus       243 ~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~  300 (493)
T PLN02350        243 IFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKE  300 (493)
T ss_pred             HHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHH
Confidence            677664 888999999999999      899999999999999 88888887765543

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=100.00  E-value=7.1e-37  Score=259.38  Aligned_cols=215  Identities=20%  Similarity=0.239  Sum_probs=192.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh---CCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v~~~~   77 (226)
                      |+|||||+|.||.+||++|.++|++|++|||++++.+.+.+.|+..+.++++++++   +|+||+|+|++.++++++   
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~---   77 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI---   77 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence            79999999999999999999999999999999999999988899999999999876   599999999988999998   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-----------------
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-----------------  140 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-----------------  140 (226)
                      +++.+.+++|++|||+||+.|...+++++.+.++|+.|+|+||+|++..++.|+ ++|+||++                 
T Consensus        78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~  156 (299)
T PRK12490         78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG  156 (299)
T ss_pred             HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence            678888889999999999999999999999999999999999999999999998 79999997                 


Q ss_pred             -----------------------------------------------------CC-CCCcchhhcccccccccCcccCCc
Q 027255          141 -----------------------------------------------------DL-GGIANPMFKGKGPTMLQSNYAPAF  166 (226)
Q Consensus       141 -----------------------------------------------------~~-~~~~s~~~~~~~~~~~~~~~~~~~  166 (226)
                                                                           +. +...|++++.+.+.+..+++  .|
T Consensus       157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~  234 (299)
T PRK12490        157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LA  234 (299)
T ss_pred             CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hh
Confidence                                                                 11 12455666666666665543  36


Q ss_pred             cchHHHHHH---HHHHHHHhhcCCCchHHHHHH-HHHHHHHHcCCCCCChHHHHHHHHh
Q 027255          167 PLKHQQKDM---RLALALGDENAVSMPIAAAAN-EAFKKARSLGLGDNDFSAVFEVVKD  221 (226)
Q Consensus       167 ~~~~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~~~  221 (226)
                      .++.+.||+   +++++.+++.|+|+|++..+. .+|....+.|.|..|++++.+++..
T Consensus       235 ~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~  293 (299)
T PRK12490        235 GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG  293 (299)
T ss_pred             hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCC
Confidence            789999998   899999999999999999995 9999999999999999999998754

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=100.00  E-value=4.9e-36  Score=233.05  Aligned_cols=151  Identities=37%  Similarity=0.644  Sum_probs=132.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||||||+|.||++||++|.++||+|++|||++++.+++.+.|++.+.|+.|+++++|+||+|+|+++++++++++++ +
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i   80 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-I   80 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-H
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-H
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999997766 9


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhcc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKG  152 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~  152 (226)
                      .+.+.+|++|||+||++|...+++++.+.++|+.|+|+||+|+++.+++|++++|+||++..-....++++.
T Consensus        81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~  152 (163)
T PF03446_consen   81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEA  152 (163)
T ss_dssp             GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHH
T ss_pred             hhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999996433333444443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=100.00  E-value=5.7e-34  Score=241.86  Aligned_cols=215  Identities=23%  Similarity=0.332  Sum_probs=182.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh---CCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v~~~~   77 (226)
                      |+|||||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..+.+++++++.   +|+||+|+|++.++++++   
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~---   77 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI---   77 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence            89999999999999999999999999999999999999999999999999999876   699999999987899998   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-----------------
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-----------------  140 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-----------------  140 (226)
                      +++.+.+++++++||+||+.|..++++++.++++|+.|+|+||+|++..++.|. ++|+||++                 
T Consensus        78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~  156 (301)
T PRK09599         78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA  156 (301)
T ss_pred             HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence            677888889999999999999999999999999999999999999999999995 89999997                 


Q ss_pred             ------------------------------------------------------CCCC-CcchhhcccccccccCcccCC
Q 027255          141 ------------------------------------------------------DLGG-IANPMFKGKGPTMLQSNYAPA  165 (226)
Q Consensus       141 ------------------------------------------------------~~~~-~~s~~~~~~~~~~~~~~~~~~  165 (226)
                                                                            +.+. ..|++++.+.+.+.. +  +.
T Consensus       157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~--~~  233 (301)
T PRK09599        157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAE-D--PK  233 (301)
T ss_pred             cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhc-C--CC
Confidence                                                                  1111 234444444444422 2  22


Q ss_pred             cc-chHHHHH---HHHHHHHHhhcCCCchHHHHHHH-HHHHHHHcCCCCCChHHHHHHHHhh
Q 027255          166 FP-LKHQQKD---MRLALALGDENAVSMPIAAAANE-AFKKARSLGLGDNDFSAVFEVVKDL  222 (226)
Q Consensus       166 ~~-~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~~-~~~~a~~~g~g~~d~~~~~~~~~~~  222 (226)
                      |. +..+.||   ++++.+.|.+.|+|+|++.++.. .|....+.|++..|.+++.+++...
T Consensus       234 ~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h  295 (301)
T PRK09599        234 LDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGH  295 (301)
T ss_pred             HHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCC
Confidence            32 4445666   59999999999999999999555 5999999999999999999987543

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.97  E-value=3.3e-30  Score=218.49  Aligned_cols=192  Identities=18%  Similarity=0.240  Sum_probs=164.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh---hCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK---KCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~---~advvi~~~p~~~~~~~v~~~~   77 (226)
                      |+|||||+|.||.+||++|.++||+|.+|||++++.+.+.+.|+..+.+++++++   ++|+||+|+|++ .+++++   
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~---   76 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL---   76 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence            8999999999999999999999999999999999999999988877788877654   579999999997 899999   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-----------------
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-----------------  140 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-----------------  140 (226)
                      +++.+.+++|++|||+||+.|..+.++.+.+.++|++|+|+||+|++.+++.| +++|+||++                 
T Consensus        77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~  155 (298)
T TIGR00872        77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE  155 (298)
T ss_pred             HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence            78888899999999999999999999999999999999999999999999999 589999987                 


Q ss_pred             -----------------------------------------------------CCCC-CcchhhcccccccccCcccCCc
Q 027255          141 -----------------------------------------------------DLGG-IANPMFKGKGPTMLQSNYAPAF  166 (226)
Q Consensus       141 -----------------------------------------------------~~~~-~~s~~~~~~~~~~~~~~~~~~~  166 (226)
                                                                           +.+. ..|++++...+.+..+++.+.|
T Consensus       156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~  235 (298)
T TIGR00872       156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF  235 (298)
T ss_pred             CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHH
Confidence                                                                 1122 2445555554445555555566


Q ss_pred             cch-HHHHHHHHHHHHHhhcCCCchHHHHHHH
Q 027255          167 PLK-HQQKDMRLALALGDENAVSMPIAAAANE  197 (226)
Q Consensus       167 ~~~-~~~kd~~~~~~~a~~~g~~~p~~~~~~~  197 (226)
                      ... ...+|.+.+...+.+.|+|+|.+.++..
T Consensus       236 ~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~  267 (298)
T TIGR00872       236 SGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQ  267 (298)
T ss_pred             HHHHHhhccHHHHHHHHHHhCCCHHHHHHHHH
Confidence            544 4678889999999999999999999653

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.97  E-value=1.6e-29  Score=224.71  Aligned_cols=152  Identities=22%  Similarity=0.342  Sum_probs=137.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhh---hCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIK---KCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~---~advvi~~~p~~~~~~   71 (226)
                      ++|||||+|.||++||++|+++||+|++|||++++++.+.+.    |  +..+.+++++++   ++|+||+|+|+++.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            479999999999999999999999999999999999998764    5  446889999987   4899999999999999


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhc
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK  151 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~  151 (226)
                      +++   +++.+.+.+|++|||++|+.+..+.+..+.+.++|++|+|+||+|++.+|+.|. ++|+||++..-....|+++
T Consensus        82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~  157 (470)
T PTZ00142         82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE  157 (470)
T ss_pred             HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence            999   788999999999999999999999999999999999999999999999999999 8999999866555667776


Q ss_pred             ccccc
Q 027255          152 GKGPT  156 (226)
Q Consensus       152 ~~~~~  156 (226)
                      ..+.+
T Consensus       158 ~ia~~  162 (470)
T PTZ00142        158 KCSAK  162 (470)
T ss_pred             HHhhh
Confidence            66544

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.96  E-value=2.3e-28  Score=217.40  Aligned_cols=152  Identities=25%  Similarity=0.406  Sum_probs=136.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhh---hCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIK---KCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~---~advvi~~~p~~~~~~~v   73 (226)
                      +|||||+|.||.+||++|+++||+|++|||++++.+.+.+.     ++..+.+++++++   ++|+||+|+|++..++++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            48999999999999999999999999999999999999876     2567788888875   589999999999999999


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccc
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGK  153 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~  153 (226)
                      +   +++.+.+.+|++|||+||+.|..+.+..+.+.++|++|+|+||+|++.+|+.|. ++|+||++..-....|+++..
T Consensus        81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~i  156 (467)
T TIGR00873        81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKI  156 (467)
T ss_pred             H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHH
Confidence            9   788899999999999999999999999999999999999999999999999998 899999986655666777766


Q ss_pred             cccc
Q 027255          154 GPTM  157 (226)
Q Consensus       154 ~~~~  157 (226)
                      +.++
T Consensus       157 a~~~  160 (467)
T TIGR00873       157 AAKV  160 (467)
T ss_pred             hhhc
Confidence            6543

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.95  E-value=8.9e-27  Score=206.53  Aligned_cols=143  Identities=25%  Similarity=0.391  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhh---CCeEEEecCCHHHHHHHhhccccccc
Q 027255           11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDKGGVLE   82 (226)
Q Consensus        11 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v~~~~~~l~~   82 (226)
                      ||.+||+||+++||+|.+|||++++.+.+.+.     |+..+.|+++++++   +|+||+|+|++.++++++   +++++
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~   77 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP   77 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence            89999999999999999999999999999874     58889999999985   899999999999999999   78999


Q ss_pred             ccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccccccc
Q 027255           83 QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTM  157 (226)
Q Consensus        83 ~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~~~~  157 (226)
                      .+.+|.+|||+||+.|..+++.++.++++|++|+|+||+|++.+|+.|. ++|+||++..-....|+++..+.++
T Consensus        78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~  151 (459)
T PRK09287         78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKV  151 (459)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999998 8999999876666777777776654

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.94  E-value=1.9e-26  Score=203.56  Aligned_cols=199  Identities=18%  Similarity=0.152  Sum_probs=159.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-------------------CC-CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+|.||.+||.+|+++||+|++||+++++++.+.+                   .| ++.+.++.++++++|+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            89999999999999999999999999999999999988764                   23 56677888999999999


Q ss_pred             EEecCCHH---------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--CCc-EEecCCCCChHhhc
Q 027255           61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGH-FLEAPVSGSKQPAE  128 (226)
Q Consensus        61 i~~~p~~~---------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~-~ld~pv~g~~~~a~  128 (226)
                      |+|+|++.         .+..++   +++.+.++++++||++||+.|.+.+++.+.+.++  |.. ++|.|+.++|..+.
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~  157 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR  157 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence            99999864         366666   6777888899999999999999999998666554  554 67899999999999


Q ss_pred             cCcE--------EEEeccCC-----------CCC------------------------------------------CCcc
Q 027255          129 TGQL--------VILSAGEK-----------DLG------------------------------------------GIAN  147 (226)
Q Consensus       129 ~g~~--------~~~~gg~~-----------~~~------------------------------------------~~~s  147 (226)
                      .|++        .+++|+++           ..+                                          ....
T Consensus       158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~  237 (411)
T TIGR03026       158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY  237 (411)
T ss_pred             CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            9987        78998776           010                                          0000


Q ss_pred             hhhc--ccccccccCcccCCc--cchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 027255          148 PMFK--GKGPTMLQSNYAPAF--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  202 (226)
Q Consensus       148 ~~~~--~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  202 (226)
                      .+.+  ...+++..+.|.|+|  ...++.||++++++.++++|+++|+++++.++-+.-
T Consensus       238 ~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~  296 (411)
T TIGR03026       238 EVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ  296 (411)
T ss_pred             HHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence            0011  113566778888876  567799999999999999999999999998876543

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.93  E-value=1.7e-25  Score=192.17  Aligned_cols=206  Identities=16%  Similarity=0.234  Sum_probs=167.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------C------CcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------G------ATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------g------~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||++||.+|+++||+|++|+|++++.+.+...        |      +..+.+++++++++|+||+|+|+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~   84 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS   84 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence            799999999999999999999999999999999988888764        3      34567888988999999999998


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecCC-CCHHH--HHHHHHHHHh---cCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMST-VDHET--SIKISRAITS---KGGHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~--~~~l~~~~~~---~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                      . ++++++       +.++++.++|++++ ..|..  .+.+++.+.+   +++.++++|..........+++++++|++.
T Consensus        85 ~-~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~  156 (328)
T PRK14618         85 K-ALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEP  156 (328)
T ss_pred             H-HHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCH
Confidence            5 677776       44567889999998 46554  6677787766   678889999888877777789999999986


Q ss_pred             --------------------------------------------------------------------------------
Q 027255          141 --------------------------------------------------------------------------------  140 (226)
Q Consensus       141 --------------------------------------------------------------------------------  140 (226)
                                                                                                      
T Consensus       157 ~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~  236 (328)
T PRK14618        157 GLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYG  236 (328)
T ss_pred             HHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhc
Confidence                                                                                            


Q ss_pred             --CC----CCCcchhhccc--ccccccC---c-ccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCC
Q 027255          141 --DL----GGIANPMFKGK--GPTMLQS---N-YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLG  208 (226)
Q Consensus       141 --~~----~~~~s~~~~~~--~~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g  208 (226)
                        ..    ++..|+..+++  ++++..+   + +.++|.+.++.||+++++++++++++++|+++.+++++       ++
T Consensus       237 ~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~~  309 (328)
T PRK14618        237 LSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------RG  309 (328)
T ss_pred             CcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hC
Confidence              01    13345556666  3367777   4 67789999999999999999999999999999999988       46


Q ss_pred             CCChHHHHHHHHh
Q 027255          209 DNDFSAVFEVVKD  221 (226)
Q Consensus       209 ~~d~~~~~~~~~~  221 (226)
                      +.|..++++.+-+
T Consensus       310 ~~~~~~~~~~~~~  322 (328)
T PRK14618        310 GWDPLAGLRSLMG  322 (328)
T ss_pred             CCCHHHHHHHHhc
Confidence            6677776666543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.93  E-value=5e-25  Score=175.22  Aligned_cols=204  Identities=24%  Similarity=0.320  Sum_probs=169.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh---CCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v~~~~   77 (226)
                      |+||+||+|.||..|.++|.+.||+|++||+|++..+++...|++.++|+.+.++.   ..+|++++|..+.+..++   
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi---   77 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI---   77 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence            89999999999999999999999999999999999999999999999999998764   689999999988899999   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccccccc
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTM  157 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~~~~  157 (226)
                      +.+.+.|.+|.+|||-.++...++.+.++.++++|++|+|+..+|+.-+++.|-. +|+||++.......|+|+...+.-
T Consensus        78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~-lMiGG~~~a~~~~~pif~~lA~ge  156 (300)
T COG1023          78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYC-LMIGGDEEAVERLEPIFKALAPGE  156 (300)
T ss_pred             HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCce-EEecCcHHHHHHHHHHHHhhCcCc
Confidence            8899999999999999999999999999999999999999999999999999975 999999866666677777766531


Q ss_pred             ----ccCcccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 027255          158 ----LQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD  221 (226)
Q Consensus       158 ----~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~  221 (226)
                          .-|.-..+--+++.+.-+++.+..|-..|+            +... ...=+.|+.++.++|+.
T Consensus       157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGf------------elL~-~s~fD~D~~~VA~vW~h  211 (300)
T COG1023         157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGF------------ELLK-NSPFDYDLEAVAEVWNH  211 (300)
T ss_pred             CccccccCCCcchhHHHHhccHHHHHHHHHHHHH------------HHHH-hCCCCCCHHHHHHHHhC
Confidence                122222344578888888877665544443            2222 22356778888777764

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.90  E-value=2.6e-23  Score=178.07  Aligned_cols=136  Identities=19%  Similarity=0.297  Sum_probs=113.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------------CCcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||..||.+|+++||+|++|+|++++.+.+...              ++..+.+++++++++|+||+|+|+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            699999999999999999999999999999999999888775              355567888888999999999988


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecC-CCCHHHHHHHHHHHHhc-----CCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMS-TVDHETSIKISRAITSK-----GGHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~s-t~~~~~~~~l~~~~~~~-----g~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                       .++++++   .++.+.+.+++++|+++ ++.+...+.+++.+.+.     ...++++|.++....+..+++.++.+++.
T Consensus        82 -~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~  157 (325)
T PRK00094         82 -QALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE  157 (325)
T ss_pred             -HHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence             6788888   67778888899999988 67776666677776664     44578888887776777778878877765

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.90  E-value=1.6e-23  Score=178.41  Aligned_cols=194  Identities=18%  Similarity=0.301  Sum_probs=146.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||++||++|.++||+|++|+|++.             .+++++++++|+||+|+|+ .++++++   +++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~l   67 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQV   67 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HHH
Confidence            7999999999999999999999999999999864             5788899999999999999 5888888   666


Q ss_pred             cc-ccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCC--CChHhh-----ccCcEEEEeccCC-----------
Q 027255           81 LE-QICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVS--GSKQPA-----ETGQLVILSAGEK-----------  140 (226)
Q Consensus        81 ~~-~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~--g~~~~a-----~~g~~~~~~gg~~-----------  140 (226)
                      .+ .+.+++++|++++ ..|...+.+++.+..+   |.+.|+.  ++|..+     +.+++++++|++.           
T Consensus        68 ~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~  144 (308)
T PRK14619         68 QALNLPPETIIVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFS  144 (308)
T ss_pred             HHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhC
Confidence            55 3678899999987 6777767666666543   4566763  343332     3368889999887           


Q ss_pred             ----------C------------------------------------------------CCCCcchhhc--------ccc
Q 027255          141 ----------D------------------------------------------------LGGIANPMFK--------GKG  154 (226)
Q Consensus       141 ----------~------------------------------------------------~~~~~s~~~~--------~~~  154 (226)
                                +                                                .|.....+++        ...
T Consensus       145 ~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~  224 (308)
T PRK14619        145 SERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATC  224 (308)
T ss_pred             CCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheee
Confidence                      0                                                0000000111        012


Q ss_pred             cccccCcccCCccchHH----------------HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 027255          155 PTMLQSNYAPAFPLKHQ----------------QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV  218 (226)
Q Consensus       155 ~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~  218 (226)
                      +.+.+|+|.++|.+..+                .||++++++++++.|+++|++.+++++|       +++.+...+++.
T Consensus       225 ~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~~~~~~~~~  297 (308)
T PRK14619        225 TSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEITPQQALEE  297 (308)
T ss_pred             cCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCCCHHHHHHH
Confidence            35678888888877777                9999999999999999999999999999       466677776666


Q ss_pred             HHh
Q 027255          219 VKD  221 (226)
Q Consensus       219 ~~~  221 (226)
                      +-+
T Consensus       298 l~~  300 (308)
T PRK14619        298 LME  300 (308)
T ss_pred             HHc
Confidence            543

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.89  E-value=1.7e-22  Score=178.44  Aligned_cols=198  Identities=15%  Similarity=0.158  Sum_probs=143.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc----------------ccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----------------VGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~----------------~~~s~~~~~~~advvi~~~   64 (226)
                      |||+|||+|.||.+||.+|++ ||+|++||+++++++.++ .|..                .+++..+++++||++|+|+
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            799999999999999999877 699999999999999998 4432                3445556789999999999


Q ss_pred             CCH------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--CCcEEe--------cCCCCChHhhc
Q 027255           65 ADP------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLE--------APVSGSKQPAE  128 (226)
Q Consensus        65 p~~------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~~ld--------~pv~g~~~~a~  128 (226)
                      |++      ..++.++.+.+++.+.+++|++||++||+.|.+++++.+...++  |..+.|        .|+.+|.....
T Consensus        85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~  164 (425)
T PRK15182         85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR  164 (425)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence            988      34566666557888999999999999999999999765554443  766666        45666666666


Q ss_pred             cCcEEEEeccCCC---------------CCC---------------------------------------Ccchhhcccc
Q 027255          129 TGQLVILSAGEKD---------------LGG---------------------------------------IANPMFKGKG  154 (226)
Q Consensus       129 ~g~~~~~~gg~~~---------------~~~---------------------------------------~~s~~~~~~~  154 (226)
                      ..++..+++|...               .+.                                       ....+.+..+
T Consensus       165 ~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~  244 (425)
T PRK15182        165 LTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAG  244 (425)
T ss_pred             ccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence            6666666666541               010                                       0000000000


Q ss_pred             cccccCcccCC-ccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 027255          155 PTMLQSNYAPA-FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFK  200 (226)
Q Consensus       155 ~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~  200 (226)
                      ....-..+.|+ |.=.++-||..+....+++.|.++++.++++++-+
T Consensus       245 ~~~~~~~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~  291 (425)
T PRK15182        245 SKWNFLPFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLND  291 (425)
T ss_pred             CCCCcccCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            01011123455 66678889999999999999999999998887644

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.88  E-value=1.2e-21  Score=167.00  Aligned_cols=208  Identities=15%  Similarity=0.154  Sum_probs=159.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~~~~~~   56 (226)
                      |+|+|||+|.||.+||.+|+++||+|++|||++++.+..           .+.|             +..+.++++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            589999999999999999999999999999999877653           3344             2577889999999


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEe
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS  136 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~  136 (226)
                      +|+|+.|+|++..++..+++  .+.+.. ++.+++.+||. +....++++.+...+..+++.|+.+....    .++.++
T Consensus        83 ad~Vi~avpe~~~~k~~~~~--~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lveiv  154 (308)
T PRK06129         83 ADYVQESAPENLELKRALFA--ELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI----PVVEVV  154 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHH--HHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC----ceEEEe
Confidence            99999999997777666653  344444 55555554444 44567788888777889999999864221    366788


Q ss_pred             ccCC-------------------------------------------------------------CCCCCcchhhccccc
Q 027255          137 AGEK-------------------------------------------------------------DLGGIANPMFKGKGP  155 (226)
Q Consensus       137 gg~~-------------------------------------------------------------~~~~~~s~~~~~~~~  155 (226)
                      +|+.                                                             ..+.+.+|.+  .+|
T Consensus       155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~--~gp  232 (308)
T PRK06129        155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF--MGP  232 (308)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--cCH
Confidence            7443                                                             1223333333  577


Q ss_pred             ccccCcccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 027255          156 TMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV  218 (226)
Q Consensus       156 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~  218 (226)
                      .++.+.|.++|...++.||..++.+++++.+.|.|++....+.....++.-++..++..+.++
T Consensus       233 ~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (308)
T PRK06129        233 FETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW  295 (308)
T ss_pred             HHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            777778888999999999999999999999999999987777777777777888889888764

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.84  E-value=5.3e-20  Score=154.68  Aligned_cols=136  Identities=18%  Similarity=0.254  Sum_probs=117.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------------CCcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |+|+|||.|+||+++|..|+++||+|++|.|+++..+++...              ++.+++++.++++++|+|++.+|+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            689999999999999999999999999999999999988764              145688999999999999999999


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhc----CCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~----g~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                       +.+++++   .++.+.++++.++|.+++. .+.+.+.+.+.+.+.    -+.+|.+|-+..+.....++.+++++-|.
T Consensus        82 -~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~  156 (329)
T COG0240          82 -QALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQ  156 (329)
T ss_pred             -HHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence             7899999   7787788899999999984 666666666666654    36799999999999999999877777666

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.84  E-value=5.1e-20  Score=160.96  Aligned_cols=128  Identities=17%  Similarity=0.153  Sum_probs=108.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH----------------CCCcc--cCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----------------HGATV--GGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----------------~g~~~--~~s~~~~~~~advvi~   62 (226)
                      |||+|||+|.||.+||..|+ .||+|++||+++++++.+.+                .+.+.  ..++.++++++|+||+
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            89999999999999997776 59999999999999998876                23334  3346788899999999


Q ss_pred             ecCCH----------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcE
Q 027255           63 MLADP----------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQL  132 (226)
Q Consensus        63 ~~p~~----------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~  132 (226)
                      |+|++          ..+++++   +++.+ +++|++||+.||+.|.+++++.+.+.+.++.|       +|..+..|++
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a  148 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA  148 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence            99987          6778887   67766 68999999999999999999999887766655       6777888988


Q ss_pred             --------EEEeccCC
Q 027255          133 --------VILSAGEK  140 (226)
Q Consensus       133 --------~~~~gg~~  140 (226)
                              .+++|++.
T Consensus       149 ~~d~~~p~rvv~G~~~  164 (388)
T PRK15057        149 LYDNLHPSRIVIGERS  164 (388)
T ss_pred             cccccCCCEEEEEcCc
Confidence                    89999886

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.84  E-value=7.5e-20  Score=161.53  Aligned_cols=137  Identities=12%  Similarity=0.060  Sum_probs=110.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHH---------------hhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEV---------------IKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s~~~~---------------~~~advvi~~~   64 (226)
                      |||+|||+|.||.+||.+|+++||+|++||+++++++.+....... ...++++               .+++|+||+|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            6899999999999999999999999999999999999865332221 1112222               24799999999


Q ss_pred             CCH---------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCC--------------cEEecC--
Q 027255           65 ADP---------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--------------HFLEAP--  119 (226)
Q Consensus        65 p~~---------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~--------------~~ld~p--  119 (226)
                      |++         ..+..++   +++.+.+++|++||++||+.|.+++++...+.+++.              .++++|  
T Consensus        84 ptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~  160 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPER  160 (415)
T ss_pred             CCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCc
Confidence            997         5777777   778888999999999999999999999998877533              357888  


Q ss_pred             CCCChHhhccCcEEEEecc-CC
Q 027255          120 VSGSKQPAETGQLVILSAG-EK  140 (226)
Q Consensus       120 v~g~~~~a~~g~~~~~~gg-~~  140 (226)
                      +..|...+..+++..++|| ++
T Consensus       161 ~~~G~~~~~~~~~~~vvgG~~~  182 (415)
T PRK11064        161 VLPGQVMVELIKNDRVIGGMTP  182 (415)
T ss_pred             cCCCChhhhhcCCCEEEEeCCH
Confidence            7777777777888899999 44

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2e-20  Score=158.48  Aligned_cols=205  Identities=24%  Similarity=0.384  Sum_probs=154.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhh---hCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIK---KCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~---~advvi~~~p~~~~~~~v   73 (226)
                      .||+||+|.||+.+|.|+.++||+|.+|||++++.+++.+.     .+..+.|++|.+.   ....|++++.....+..+
T Consensus         5 ~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~   84 (473)
T COG0362           5 DIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAV   84 (473)
T ss_pred             ceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHHH
Confidence            59999999999999999999999999999999999998765     3567788888764   578899999877778888


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccc
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGK  153 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~  153 (226)
                      +   +++++.|.+|.++||-.+....++.+-.+.+.++|+.|+...|+||+.+|..|.. +|.||++.......|+++..
T Consensus        85 I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~~I  160 (473)
T COG0362          85 I---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILTKI  160 (473)
T ss_pred             H---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHHHH
Confidence            8   8899999999999999988777777778889999999999999999999999985 99999987666666666654


Q ss_pred             ccccccCc-------ccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 027255          154 GPTMLQSN-------YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD  221 (226)
Q Consensus       154 ~~~~~~~~-------~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~  221 (226)
                      ..+.-.+.       -..+--+++.+.-+++.         +|.+...++.+++..  .|+..++.+.+++-|.+
T Consensus       161 aAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYg---------DMQlIaE~Y~ilk~~--lgls~~ei~~vF~~WN~  224 (473)
T COG0362         161 AAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYG---------DMQLIAEAYDILKDG--LGLSAEEIAEVFEEWNK  224 (473)
T ss_pred             HhhcCCCCceeeECCCCCCceeeeeecCchHH---------HHHHHHHHHHHHHHh--cCCCHHHHHHHHHHhcc
Confidence            43322111       11122344444444432         234444455554432  35555666666555544

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.77  E-value=1.8e-18  Score=145.40  Aligned_cols=127  Identities=20%  Similarity=0.238  Sum_probs=102.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC----CeEEEEcCCch-hHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLS-KCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G----~~V~~~dr~~~-~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      |||+|||+|+||.+|+++|.++|    ++|++|||+++ +.+.+... |+..+.++.++++++|+||+|+|+ ..+.+++
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~vl   82 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAEAL   82 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHHHH
Confidence            79999999999999999999998    78999999864 66777654 888888999999999999999987 6777777


Q ss_pred             hcccccccccCCCcEEEec-CCCCHHHHHHHHHHHHhcCCcEEecCCCCC---hHhhccCcEEEEeccCC
Q 027255           75 FDKGGVLEQICPGKGYIDM-STVDHETSIKISRAITSKGGHFLEAPVSGS---KQPAETGQLVILSAGEK  140 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~pv~g~---~~~a~~g~~~~~~gg~~  140 (226)
                         .++.+.+.++++||++ ++++++..+++.    ..     ++||++.   .+.+..+.++++++|+.
T Consensus        83 ---~~l~~~~~~~~liIs~~aGi~~~~l~~~~----~~-----~~~v~r~mPn~~~~~~~~~t~~~~~~~  140 (279)
T PRK07679         83 ---IPFKEYIHNNQLIISLLAGVSTHSIRNLL----QK-----DVPIIRAMPNTSAAILKSATAISPSKH  140 (279)
T ss_pred             ---HHHHhhcCCCCEEEEECCCCCHHHHHHHc----CC-----CCeEEEECCCHHHHHhcccEEEeeCCC
Confidence               6777777788999996 778887666643    12     3567766   44666677888988874

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.75  E-value=1.8e-17  Score=138.35  Aligned_cols=180  Identities=16%  Similarity=0.218  Sum_probs=121.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC----eEEEE-cCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      |||+|||+|+||.+|+++|.++||    +|++| ||++++.+.+.+.|+..+.+..++++++|+||+|+| ++++++++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            899999999999999999999998    89999 999999999988899999999999999999999996 47899998 


Q ss_pred             cccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEe-cCCCCChHhhccCcEEEEecc---CCCCCCCcchhh
Q 027255           76 DKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLE-APVSGSKQPAETGQLVILSAG---EKDLGGIANPMF  150 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld-~pv~g~~~~a~~g~~~~~~gg---~~~~~~~~s~~~  150 (226)
                        .++.+.+.++++||++++ +.....+   +.+...  .++. .|..+.....   ..+.++.+   ++.......+++
T Consensus        79 --~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~~--~vvr~mP~~~~~~~~---~~~~l~~~~~~~~~~~~~v~~l~  148 (266)
T PLN02688         79 --TELRPLLSKDKLLVSVAAGITLADLQ---EWAGGR--RVVRVMPNTPCLVGE---AASVMSLGPAATADDRDLVATLF  148 (266)
T ss_pred             --HHHHhhcCCCCEEEEecCCCcHHHHH---HHcCCC--CEEEECCCcHHHHhC---ceEEEEeCCCCCHHHHHHHHHHH
Confidence              667777788998887644 4444333   333221  5664 6766554433   33334433   222122233444


Q ss_pred             ccccccc-c-cCccc-----CCccchHHHHHHHHHHHHHhhcCCCchHH
Q 027255          151 KGKGPTM-L-QSNYA-----PAFPLKHQQKDMRLALALGDENAVSMPIA  192 (226)
Q Consensus       151 ~~~~~~~-~-~~~~~-----~~~~~~~~~kd~~~~~~~a~~~g~~~p~~  192 (226)
                      +..+.-. . ...++     .+.......--++.+.+.+.+.|++....
T Consensus       149 ~~~G~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a  197 (266)
T PLN02688        149 GAVGKIWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVA  197 (266)
T ss_pred             HhCCCEEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            4433311 1 11111     12222334455666777788889987654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.74  E-value=1.1e-17  Score=141.28  Aligned_cols=130  Identities=16%  Similarity=0.209  Sum_probs=103.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC------------------------CCcccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH------------------------GATVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~------------------------g~~~~~s~~~~~~~   56 (226)
                      .+|+|||+|.||..||.+|+++||+|++||+++++++++.+.                        +++.+.++.+++++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            479999999999999999999999999999999988875421                        13457788899999


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEE-EecCCCCHHHHHHHHHHHH-hcCCcEEecCCCCChHhhccCcEEE
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGY-IDMSTVDHETSIKISRAIT-SKGGHFLEAPVSGSKQPAETGQLVI  134 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~iv-vd~st~~~~~~~~l~~~~~-~~g~~~ld~pv~g~~~~a~~g~~~~  134 (226)
                      ||+||.|+|++..++..+++  ++.+.+++++++ +++||..|....+..+... ..|++|+ +|+.++       .++.
T Consensus        82 aD~Vi~avpe~~~~k~~~~~--~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lve  151 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFE--TADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLVE  151 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceEE
Confidence            99999999998887777653  466778888866 7899999876554433221 1488888 898775       5899


Q ss_pred             EeccCC
Q 027255          135 LSAGEK  140 (226)
Q Consensus       135 ~~gg~~  140 (226)
                      |++|+.
T Consensus       152 ~v~g~~  157 (288)
T PRK09260        152 LIRGLE  157 (288)
T ss_pred             EeCCCC
Confidence            999954

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.74  E-value=1.6e-17  Score=149.90  Aligned_cols=182  Identities=19%  Similarity=0.177  Sum_probs=130.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-------------------CC-CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+                   .| +..++++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            58999999999999999999999999999999998776532                   12 67788999999999999


Q ss_pred             EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                      +.|+|+..+++..+++  ++.+.++++ .+|++||+.+... .+.+.+...+..+++.|+...    ..+.++.+++|+.
T Consensus        85 ieavpe~~~vk~~l~~--~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~  156 (495)
T PRK07531         85 QESVPERLDLKRRVLA--EIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGK  156 (495)
T ss_pred             EEcCcCCHHHHHHHHH--HHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCC
Confidence            9999998888887763  455556555 4677777766544 667777777889999998732    2447889999984


Q ss_pred             C---CCCCcchhhcccccc-cccCcccCCccchHHHHH-HHHHHHHHhhcCCCch
Q 027255          141 D---LGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKD-MRLALALGDENAVSMP  190 (226)
Q Consensus       141 ~---~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd-~~~~~~~a~~~g~~~p  190 (226)
                      .   .-....++++..+.. +.-+...++|-...+.-- +..++.++++.+++..
T Consensus       157 t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~  211 (495)
T PRK07531        157 TSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTE  211 (495)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            2   112223444444322 222334567755555555 4777777777777643

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.74  E-value=3e-17  Score=137.21  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=94.2

Q ss_pred             CeEEEEecChh--------------------HHHHHHHHHhCCCeEEEEcCCchhH-----HHHHHCCCcccCCHHHHhh
Q 027255            1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLSKC-----DELVAHGATVGGSPAEVIK   55 (226)
Q Consensus         1 m~IgvIG~G~m--------------------G~~~A~~l~~~G~~V~~~dr~~~~~-----~~l~~~g~~~~~s~~~~~~   55 (226)
                      |||.|.|+|+-                    |.+||++|+++||+|++|||++++.     +.+.+.|+..++++.++++
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa   80 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK   80 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence            89999999974                    8899999999999999999987655     4588889999999999999


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHH
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRA  107 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~  107 (226)
                      ++|+||+|+|+++++++++   .++.+.+++|++|||+||++|.....+-+.
T Consensus        81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~  129 (341)
T TIGR01724        81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEK  129 (341)
T ss_pred             CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHH
Confidence            9999999999999999998   678899999999999999999988777666

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.74  E-value=7.3e-17  Score=135.39  Aligned_cols=131  Identities=24%  Similarity=0.415  Sum_probs=103.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~~-~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      |||+|||+|.||..||+.|.++|+  +|++|||++++.+.+.+.|+. .+.+++++. ++|+||+|+|. ..+.+++   
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~-~~~~~~~---   75 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPV-DAIIEIL---   75 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcH-HHHHHHH---
Confidence            799999999999999999999996  789999999999888887864 455777765 49999999988 4566677   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCC----hHhhc----cCcEEEEeccCC
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGS----KQPAE----TGQLVILSAGEK  140 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~----~~~a~----~g~~~~~~gg~~  140 (226)
                      .++.+ ++++++|+|++++.+...+.+.+.   .+..|+.+ |+.|+    +..+.    .|..+++++++.
T Consensus        76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~  143 (275)
T PRK08507         76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEK  143 (275)
T ss_pred             HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCC
Confidence            66777 888999999999877766655443   24578999 99885    44433    677888887543

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.73  E-value=5.2e-17  Score=140.16  Aligned_cols=109  Identities=21%  Similarity=0.298  Sum_probs=81.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-----------------cCCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------------GGSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------------~~s~~~~~~~advvi~~   63 (226)
                      |||+|||+|.||..+|..|+++||+|++|+|++. .+.+.+.|...                 ..++ +.++.+|+||+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            6899999999999999999999999999999754 46666655432                 2344 567789999999


Q ss_pred             cCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        64 ~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ++. ....+++   +.+.+.+.++++|+++++. ....+.+.+.+.+  ..++++
T Consensus        81 vk~-~~~~~~~---~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~--~~~~~g  128 (341)
T PRK08229         81 VKS-AATADAA---AALAGHARPGAVVVSFQNG-VRNADVLRAALPG--ATVLAG  128 (341)
T ss_pred             ecC-cchHHHH---HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCC--CcEEEE
Confidence            988 4567777   6777888888998888653 3334455555543  345555

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.72  E-value=1.7e-16  Score=137.29  Aligned_cols=136  Identities=17%  Similarity=0.135  Sum_probs=106.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-------CeEEEEcCCch-----hHHHHHHCC--------------CcccCCHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAHG--------------ATVGGSPAEVI   54 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-------~~V~~~dr~~~-----~~~~l~~~g--------------~~~~~s~~~~~   54 (226)
                      |||+|||.|+||+++|..|+++|       |+|.+|.|+++     ..+.+.+.+              +..++++.+++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            68999999999999999999997       89999999986     366666432              34577888999


Q ss_pred             hhCCeEEEecCCHHHHHHHhhccccccc--ccCCCcEEEecCCC-CHHHH--HHHHHHHHh---cCCcEEecCCCCChHh
Q 027255           55 KKCTITIGMLADPAAALSVVFDKGGVLE--QICPGKGYIDMSTV-DHETS--IKISRAITS---KGGHFLEAPVSGSKQP  126 (226)
Q Consensus        55 ~~advvi~~~p~~~~~~~v~~~~~~l~~--~l~~g~ivvd~st~-~~~~~--~~l~~~~~~---~g~~~ld~pv~g~~~~  126 (226)
                      +++|+|++++|. +.+++++   +++.+  .++++.++|.++.. .+.+.  +.+.+.+++   ..+.++.+|.+..+..
T Consensus        92 ~~aDiIvlAVPs-q~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A~Eva  167 (365)
T PTZ00345         92 EDADLLIFVIPH-QFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVANDVA  167 (365)
T ss_pred             hcCCEEEEEcCh-HHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHHHHHH
Confidence            999999999988 7899999   77777  67777789988764 22221  233333333   3566789999999998


Q ss_pred             hccCcEEEEeccCC
Q 027255          127 AETGQLVILSAGEK  140 (226)
Q Consensus       127 a~~g~~~~~~gg~~  140 (226)
                      .+..+.+++++-+.
T Consensus       168 ~~~pt~~vias~~~  181 (365)
T PTZ00345        168 REEFSEATIGCEDK  181 (365)
T ss_pred             cCCCcEEEEEeCCH
Confidence            88999888887765

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.71  E-value=1.8e-16  Score=140.89  Aligned_cols=134  Identities=25%  Similarity=0.366  Sum_probs=114.3

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-HCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |+|+||| +|.||..+|+.|.++|++|++|+|++++...+. +.|+..+.+..++++++|+||+|+|. ..+.+++   .
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl---~   76 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI---K   76 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH---H
Confidence            8999997 899999999999999999999999998865544 45877777888999999999999998 5667887   7


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChHhhccCcEEEEeccC
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~~a~~g~~~~~~gg~  139 (226)
                      ++.+.++++++|+|++++.+...+.+.+.+. .++.|+.+ |++|+......+...+++.++
T Consensus        77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCC
Confidence            7888888999999999998888888877653 57899999 999976666778888888765

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.71  E-value=4.8e-17  Score=136.81  Aligned_cols=127  Identities=21%  Similarity=0.385  Sum_probs=99.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+|+|||+|.||..||..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|. ..+.+++   ++
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~-~~~~~~~---~~   76 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPI-GLLLPPS---EQ   76 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCH-HHHHHHH---HH
Confidence            899999999999999999999999999999999999888887753 233334577899999999987 4556666   67


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe-cCCCCCh-HhhccCcEEEE
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGSK-QPAETGQLVIL  135 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld-~pv~g~~-~~a~~g~~~~~  135 (226)
                      +.+.++++.+|+|++++.+...+.+.+.    ...|+. .|++|++ .+.+.+...+|
T Consensus        77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf  130 (279)
T PRK07417         77 LIPALPPEAIVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLF  130 (279)
T ss_pred             HHHhCCCCcEEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHh
Confidence            7788888999999999987766555433    335888 5999987 45554444333

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.5e-17  Score=137.94  Aligned_cols=206  Identities=22%  Similarity=0.375  Sum_probs=151.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC---C--CcccCCHHHHhh---hCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH---G--ATVGGSPAEVIK---KCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~---g--~~~~~s~~~~~~---~advvi~~~p~~~~~~~   72 (226)
                      +.||+||++.||+.++.|.+.+||.|.+|||+.++++++.+.   |  +....|+++.+.   ...+|++.+.....+..
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            368999999999999999999999999999999999998664   2  445778999875   47889999988888998


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhcc
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKG  152 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~  152 (226)
                      .+   +++.+.+.+|.+|||-.+.....+.+-.+.+.++|+-|+.+.|+||+.+|+.|.. +|.||+......--++++.
T Consensus        87 ~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq~  162 (487)
T KOG2653|consen   87 FI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQK  162 (487)
T ss_pred             HH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHHH
Confidence            88   8899999999999999988777777777888899999999999999999999985 9999998666555555554


Q ss_pred             cccccccC--------cccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 027255          153 KGPTMLQS--------NYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD  221 (226)
Q Consensus       153 ~~~~~~~~--------~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~  221 (226)
                      ......++        +-..+--+++.+..+++-         +|.++..++.++...  -|+.++..+.++.-|.+
T Consensus       163 iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYG---------DMqLI~EaY~vlk~~--~gls~~eia~vF~~WN~  228 (487)
T KOG2653|consen  163 IAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYG---------DMQLICEAYDVLKSV--LGLSNDEIAEVFDDWNK  228 (487)
T ss_pred             HHHHhcCCCCCeeeecCCCCccchhhhccCcccc---------hHHHHHHHHHHHHHh--cCCcHHHHHHHHHhhcc
Confidence            43322211        111122244443333221         344555555555532  35556666666555543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.70  E-value=1.7e-16  Score=143.33  Aligned_cols=124  Identities=19%  Similarity=0.356  Sum_probs=102.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhhC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKKC   57 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~~~~~~a   57 (226)
                      +|+|||+|.||..||.+|+.+||+|++||++++++++.           .+.|             ++.+.+++++ .+|
T Consensus         9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~-~~a   87 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL-ADC   87 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-CCC
Confidence            69999999999999999999999999999999988773           4555             4677888664 699


Q ss_pred             CeEEEecCCHHHHHHHhhcccccccccCCCcEE-EecCCCCHHHHHHHHHHHHh----cCCcEEe-cCCCCChHhhccCc
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGY-IDMSTVDHETSIKISRAITS----KGGHFLE-APVSGSKQPAETGQ  131 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~iv-vd~st~~~~~~~~l~~~~~~----~g~~~ld-~pv~g~~~~a~~g~  131 (226)
                      |+||.|+|++..++..++++  +...+++++++ .|+||.++.   ++++.+..    .|++|++ +|++         .
T Consensus        88 DlViEav~E~~~vK~~vf~~--l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~---------~  153 (507)
T PRK08268         88 DLVVEAIVERLDVKQALFAQ--LEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM---------K  153 (507)
T ss_pred             CEEEEcCcccHHHHHHHHHH--HHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC---------e
Confidence            99999999999999998743  55666788888 489999886   45555443    3899999 8888         5


Q ss_pred             EEEEeccCC
Q 027255          132 LVILSAGEK  140 (226)
Q Consensus       132 ~~~~~gg~~  140 (226)
                      |+.+++|+.
T Consensus       154 LvEvv~g~~  162 (507)
T PRK08268        154 LVEVVSGLA  162 (507)
T ss_pred             eEEEeCCCC
Confidence            889998854

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.70  E-value=6.8e-17  Score=124.69  Aligned_cols=134  Identities=19%  Similarity=0.232  Sum_probs=103.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhhCCeEEEecCCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      ||+|||.|+||+++|..|+.+||+|++|.|+++.++.+.+.+              +.++++++++++++|+|++++|. 
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs-   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS-   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence            799999999999999999999999999999999999887643              34678899999999999999998 


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCCC-HHH----HHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTVD-HET----SIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~----~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~  139 (226)
                      ...++++   +.+.+.+++++++|.++..- +.+    .+.+.+.+....+.++.+|.+..+...+..+..++++-+
T Consensus        80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~  153 (157)
T PF01210_consen   80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKN  153 (157)
T ss_dssp             GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESS
T ss_pred             HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecc
Confidence            6788999   88999999999999998753 333    344444444445789999999999999888887777654

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.69  E-value=3.4e-16  Score=134.66  Aligned_cols=132  Identities=17%  Similarity=0.200  Sum_probs=108.8

Q ss_pred             CeEEEEecChh--------------------HHHHHHHHHhCCCeEEEEcCCch-----hHHHHHHCCCcccCCHHHHhh
Q 027255            1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK   55 (226)
Q Consensus         1 m~IgvIG~G~m--------------------G~~~A~~l~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s~~~~~~   55 (226)
                      |||.|.|+|+-                    |.+||.+|+++||+|++|||+++     +.+.+...|+.++.++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~   80 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK   80 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence            78999999974                    88999999999999999999987     455677789988899999999


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHH-HHHHHHHH----hcCCcEEe-cCCCCChHhhcc
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETS-IKISRAIT----SKGGHFLE-APVSGSKQPAET  129 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~-~~l~~~~~----~~g~~~ld-~pv~g~~~~a~~  129 (226)
                      ++|+||+|+|++.++++++   .++.+.++++++|||+||+.|... +.+.+.+.    ..|+.+.+ +++.|    ++.
T Consensus        81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G----ae~  153 (342)
T PRK12557         81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG----TPQ  153 (342)
T ss_pred             CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc----ccc
Confidence            9999999999977689998   678888989999999999999987 67777765    33565553 34444    455


Q ss_pred             CcEEEEeccC
Q 027255          130 GQLVILSAGE  139 (226)
Q Consensus       130 g~~~~~~gg~  139 (226)
                      +.+.+|+||.
T Consensus       154 g~l~Vm~gg~  163 (342)
T PRK12557        154 HGHYVIAGKT  163 (342)
T ss_pred             chheEEeCCC
Confidence            6678888874

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.69  E-value=4e-16  Score=134.10  Aligned_cols=134  Identities=14%  Similarity=0.095  Sum_probs=107.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCC--------CeEEEEcC-----CchhHHHHHHC--------C------CcccCCHHHHh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG--------FKVTVWNR-----TLSKCDELVAH--------G------ATVGGSPAEVI   54 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G--------~~V~~~dr-----~~~~~~~l~~~--------g------~~~~~s~~~~~   54 (226)
                      ||+|||.|+||+++|..|+.+|        |+|++|.|     +++..+.+.+.        |      +++++++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            6999999999999999999999        99999998     54555555432        1      34567889999


Q ss_pred             hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC-CHH--HHHHHHHHHHh---cCCcEEecCCCCChHhhc
Q 027255           55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHE--TSIKISRAITS---KGGHFLEAPVSGSKQPAE  128 (226)
Q Consensus        55 ~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~--~~~~l~~~~~~---~g~~~ld~pv~g~~~~a~  128 (226)
                      +++|+||+++|+ +.+++++   ..+.+.+++++++|.++.. .+.  +.+.+.+.+.+   ..+.++.+|.+..+...+
T Consensus        81 ~~ADiIIlAVPs-~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~  156 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKE  156 (342)
T ss_pred             hcCCEEEEECCh-HHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcC
Confidence            999999999998 7899988   7888888888999998874 444  44444444443   356779999999999999


Q ss_pred             cCcEEEEeccC
Q 027255          129 TGQLVILSAGE  139 (226)
Q Consensus       129 ~g~~~~~~gg~  139 (226)
                      ..+.+++++-+
T Consensus       157 ~pt~~~ia~~~  167 (342)
T TIGR03376       157 KFSETTVGYRD  167 (342)
T ss_pred             CCceEEEEeCC
Confidence            99998888888

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.67  E-value=3.8e-16  Score=140.70  Aligned_cols=125  Identities=19%  Similarity=0.270  Sum_probs=97.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~~~~~~   56 (226)
                      .+|+|||+|.||..||.+++++||+|++||++++++++.           .+.|             ++.+.++++ +.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            479999999999999999999999999999999988753           3334             346778865 469


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEE-ecCCCCHHHHHHHHHHH----HhcCCcEEe-cCCCCChHhhccC
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAI----TSKGGHFLE-APVSGSKQPAETG  130 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv-d~st~~~~~~~~l~~~~----~~~g~~~ld-~pv~g~~~~a~~g  130 (226)
                      ||+||.|+|++.+++..+|+  ++...++++.++. ++||.++.   ++++.+    +..|.+|++ +|++         
T Consensus        85 aDlVIEav~E~~~vK~~vf~--~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~---------  150 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFA--QLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM---------  150 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHH--HHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC---------
Confidence            99999999999999998874  3556666666654 56666664   344444    335899999 8888         


Q ss_pred             cEEEEeccCC
Q 027255          131 QLVILSAGEK  140 (226)
Q Consensus       131 ~~~~~~gg~~  140 (226)
                      .++.+++|+.
T Consensus       151 ~LvEvv~g~~  160 (503)
T TIGR02279       151 ALVEVVSGLA  160 (503)
T ss_pred             ceEEEeCCCC
Confidence            3889999954

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.66  E-value=6.7e-15  Score=122.41  Aligned_cols=204  Identities=16%  Similarity=0.195  Sum_probs=132.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCe---EEEEcCCchhHHHHHHC--CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~---V~~~dr~~~~~~~l~~~--g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      |||||||+|+||.+|++.|.+.|++   +.+|+|++++.+.+.+.  ++..+.+..++++++|+||+|+| ++.+.+++ 
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl-   78 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL-   78 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence            8999999999999999999998864   57999999999888775  57778899999999999999998 57888888 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccccc
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGP  155 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~~  155 (226)
                        +++ . +.++++||++...  .....+.+.+......+...|+.   +.+.....+.++.++.    ...++++..+.
T Consensus        79 --~~l-~-~~~~~~vis~~ag--~~~~~l~~~~~~~~~~~r~~P~~---~~a~~~g~t~~~~~~~----~~~~l~~~lG~  145 (258)
T PRK06476         79 --RAL-R-FRPGQTVISVIAA--TDRAALLEWIGHDVKLVRAIPLP---FVAERKGVTAIYPPDP----FVAALFDALGT  145 (258)
T ss_pred             --HHh-c-cCCCCEEEEECCC--CCHHHHHHHhCCCCCEEEECCCC---hhhhCCCCeEecCCHH----HHHHHHHhcCC
Confidence              444 2 4578888886543  34455555554444567788883   2233334455555542    22333333332


Q ss_pred             cc--ccCcccCCc-----cchHHHHHHHHHHHHHhhcCCCchHH-HHHHHHHHHHHHcC--CCCCChHHHHHHH
Q 027255          156 TM--LQSNYAPAF-----PLKHQQKDMRLALALGDENAVSMPIA-AAANEAFKKARSLG--LGDNDFSAVFEVV  219 (226)
Q Consensus       156 ~~--~~~~~~~~~-----~~~~~~kd~~~~~~~a~~~g~~~p~~-~~~~~~~~~a~~~g--~g~~d~~~~~~~~  219 (226)
                      .+  .+.+.-..+     ....+..=+..+.+.+.+.|++.... +.+.+.+..+.+..  .++.++..+.+.+
T Consensus       146 ~~~~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v  219 (258)
T PRK06476        146 AVECDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREF  219 (258)
T ss_pred             cEEECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhC
Confidence            22  111111111     23344445778888899999986543 44445555444331  3445556665543

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.65  E-value=3.5e-15  Score=128.89  Aligned_cols=134  Identities=15%  Similarity=0.211  Sum_probs=95.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC---------------CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---------------ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g---------------~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+|.||+.+|..|+++| +|.+|.|+++..+.+.+.+               +..++++.++++++|+||+++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            69999999999999999999999 6889999999988887542               2345677788899999999998


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHh----cCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~----~g~~~ld~pv~g~~~~a~~g~~~~~~gg~  139 (226)
                      . ..+++++   +.+.+.+.+++++|.++.. ...+.+.+.+.+.+    ..+..+.+|-+..+......+..++.+-+
T Consensus        87 s-~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~  161 (341)
T PRK12439         87 S-HGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPD  161 (341)
T ss_pred             H-HHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCC
Confidence            7 6789998   7888888888888887764 33223333333333    22345666755554444444444444433

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.65  E-value=9.1e-16  Score=121.34  Aligned_cols=118  Identities=19%  Similarity=0.256  Sum_probs=85.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+|.+|.++|..|+++||+|++||.++++++.+.+.                    ...++.+..++++++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            899999999999999999999999999999999999887643                    135677888989999999


Q ss_pred             EEecCCH---------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHH-HHHHhcC-----CcEEecCCC
Q 027255           61 IGMLADP---------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKIS-RAITSKG-----GHFLEAPVS  121 (226)
Q Consensus        61 i~~~p~~---------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~-~~~~~~g-----~~~ld~pv~  121 (226)
                      |+|+|++         ..++.++   +.+.+.++++++||..||+.|.+++++. ..+.+.+     +.+.-+|-+
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr  153 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER  153 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred             EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence            9999865         3466677   7788899999999999999999999555 4444433     356666644

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=2.9e-15  Score=128.11  Aligned_cols=196  Identities=17%  Similarity=0.128  Sum_probs=141.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~~~~~~advv   60 (226)
                      |||.|||.|.+|...+..|++.||+|+.+|.++++++.+...                   | .+++++.+++++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            899999999999999999999999999999999999887643                   1 56788999999999999


Q ss_pred             EEecCCHH---------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcC----CcEEecCCCCChHhh
Q 027255           61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG----GHFLEAPVSGSKQPA  127 (226)
Q Consensus        61 i~~~p~~~---------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g----~~~ld~pv~g~~~~a  127 (226)
                      |+|+|++.         .++.++   +.+.+.++..++||.-||+.|.+.+.+.+.+....    +.++..|-+=.+..|
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A  157 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA  157 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence            99999754         466666   77888887779999999999999999998887754    335555544333222


Q ss_pred             ccCcE---EEEeccCCCC-------------------------------------------------------CCCcchh
Q 027255          128 ETGQL---VILSAGEKDL-------------------------------------------------------GGIANPM  149 (226)
Q Consensus       128 ~~g~~---~~~~gg~~~~-------------------------------------------------------~~~~s~~  149 (226)
                      -...+   -+.+|.....                                                       |.....+
T Consensus       158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V  237 (414)
T COG1004         158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQV  237 (414)
T ss_pred             hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            21111   1556654410                                                       0000111


Q ss_pred             hccc--ccccccCcccC--CccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 027255          150 FKGK--GPTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAF  199 (226)
Q Consensus       150 ~~~~--~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~  199 (226)
                      .+..  -+|+-..-..+  ||.=.++-||++..+..++++|.+.+|++++.++=
T Consensus       238 ~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN  291 (414)
T COG1004         238 AEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVN  291 (414)
T ss_pred             HHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            1111  13333222233  55668889999999999999999999999886653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.63  E-value=9.2e-15  Score=125.51  Aligned_cols=135  Identities=16%  Similarity=0.240  Sum_probs=91.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHh-hhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVI-KKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~~~~-~~advvi~~~p   65 (226)
                      |||+|||+|.||+.+|..|+++||+|.+|+|+++.++.+.+.+              +....++.+.+ ..+|+||+++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            8999999999999999999999999999999998888887631              12345666665 58999999998


Q ss_pred             CHHHHHHHhhccccccc-ccCCCcEEEecCCCC-HH----HHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255           66 DPAAALSVVFDKGGVLE-QICPGKGYIDMSTVD-HE----TSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~-~l~~g~ivvd~st~~-~~----~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~  139 (226)
                      + .++++++   +.+.+ .+.+++.++.+++.- ..    ..+.+.+.+..+.+..+.+|.+.........+...+.|.+
T Consensus        81 s-~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~  156 (326)
T PRK14620         81 T-QQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN  156 (326)
T ss_pred             H-HHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence            7 7788888   77777 777777666665532 21    1233344443333445556654333332333344444433

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.62  E-value=1.6e-15  Score=107.28  Aligned_cols=89  Identities=24%  Similarity=0.408  Sum_probs=76.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCC---CeEEEE-cCCchhHHHHHHC-CCcccC-CHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW-NRTLSKCDELVAH-GATVGG-SPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G---~~V~~~-dr~~~~~~~l~~~-g~~~~~-s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ||||||.|+||++|++.|.++|   ++|+++ +|++++.+++.+. ++.... +..++++++|+||+|+|. .++.+++ 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHH-
Confidence            7999999999999999999999   899955 9999999998665 666666 899999999999999976 7888888 


Q ss_pred             cccccccccCCCcEEEecCC
Q 027255           76 DKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st   95 (226)
                        ..+ ....+++++|+++.
T Consensus        79 --~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   79 --SEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             --HHH-HHHHTTSEEEEEST
T ss_pred             --HHH-hhccCCCEEEEeCC
Confidence              667 66779999999764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.62  E-value=1.8e-15  Score=127.58  Aligned_cols=120  Identities=19%  Similarity=0.246  Sum_probs=95.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHH-----------HHHCCC-------------cccCCHHHHhhhC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHGA-------------TVGGSPAEVIKKC   57 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-----------l~~~g~-------------~~~~s~~~~~~~a   57 (226)
                      +|+|||+|.||..||.+++.+||+|++||++++..+.           +.+.|.             +.++++ +.+++|
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~   85 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADR   85 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCC
Confidence            7999999999999999999999999999999998776           444442             256777 557999


Q ss_pred             CeEEEecCCHHHHHHHhhccccccccc-CCCcEEEecCCCCHHHHHHHHHHHHhc--CCcEEe-cCCCCCh
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQI-CPGKGYIDMSTVDHETSIKISRAITSK--GGHFLE-APVSGSK  124 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l-~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~~ld-~pv~g~~  124 (226)
                      |+||.|+|++..++..+|+  .+...+ ++++++++.||+.|.+.........++  |.+|.+ +|+++..
T Consensus        86 d~ViEav~E~~~~K~~l~~--~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv  154 (286)
T PRK07819         86 QLVIEAVVEDEAVKTEIFA--ELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV  154 (286)
T ss_pred             CEEEEecccCHHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE
Confidence            9999999999999998874  355555 789999998888777666555444445  788888 5666543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.62  E-value=5.4e-15  Score=125.97  Aligned_cols=119  Identities=21%  Similarity=0.378  Sum_probs=98.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCC--cccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~--~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      ++|+|||+|.||..+|+.|.+.|+  +|++|||++++.+.+.+.|+  ..+.++.++++++|+||+|+|. .....++  
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~--   83 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVA--   83 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHH--
Confidence            589999999999999999999985  89999999999888887775  3456788888999999999998 4556666  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCCh
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSK  124 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~  124 (226)
                       +++.+.++++.+|+|++++.....+.+.+.+. .++.|+.+ |+.|++
T Consensus        84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e  130 (307)
T PRK07502         84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTE  130 (307)
T ss_pred             -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCc
Confidence             56667788899999999988877777666543 47789998 999865

>PRK07680 late competence protein ComER; Validated

Probab=99.62  E-value=4.3e-15  Score=124.57  Aligned_cols=127  Identities=17%  Similarity=0.278  Sum_probs=99.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC----eEEEEcCCchhHHHHHHC--CCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~l~~~--g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      |+|+|||+|.||..|++.|.++|+    +|.+|+|++++.+.+.+.  |+....+..+++.++|+||+|+|. ..+++++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence            799999999999999999999984    799999999988887664  677788899999999999999975 6788888


Q ss_pred             hcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEec
Q 027255           75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA  137 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~g  137 (226)
                         +++.+.+.++++||+++...  ..+.+.+.+..+.++++..    .+..+..|...++.|
T Consensus        80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g  133 (273)
T PRK07680         80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFG  133 (273)
T ss_pred             ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeC
Confidence               77777888889999998743  3455555554444455542    344566787766654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.61  E-value=2.9e-15  Score=126.88  Aligned_cols=130  Identities=18%  Similarity=0.252  Sum_probs=95.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHH-----------HHHCC------------CcccCCHHHHhhhC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHG------------ATVGGSPAEVIKKC   57 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-----------l~~~g------------~~~~~s~~~~~~~a   57 (226)
                      ++|+|||+|.||.+||.+|+++|++|++||+++++.++           +.+.|            .....+..+++++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            37999999999999999999999999999999988753           33333            12233344678999


Q ss_pred             CeEEEecCCHHHHHHHhhcccccccccCCCcEEE-ecCCCCHHHHHHHHHH-HHhcCCcEEecCCCCChHhhccCcEEEE
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRA-ITSKGGHFLEAPVSGSKQPAETGQLVIL  135 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv-d~st~~~~~~~~l~~~-~~~~g~~~ld~pv~g~~~~a~~g~~~~~  135 (226)
                      |+||.|+|++.+++..+++  ++.+.++++++|+ ++|++++....+.... .+-.+++|.+.|..+        .++.+
T Consensus        85 D~Vieav~e~~~~k~~v~~--~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~--------~lvei  154 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFS--ELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIM--------KLVEI  154 (295)
T ss_pred             CEEEEcCccCHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccC--------ceEEE
Confidence            9999999988888888764  3667788888886 7888877655443322 112378889888764        44566


Q ss_pred             eccCC
Q 027255          136 SAGEK  140 (226)
Q Consensus       136 ~gg~~  140 (226)
                      +.|+.
T Consensus       155 v~g~~  159 (295)
T PLN02545        155 IRGAD  159 (295)
T ss_pred             eCCCC
Confidence            66643

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.61  E-value=2.8e-14  Score=127.54  Aligned_cols=120  Identities=16%  Similarity=0.165  Sum_probs=99.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHCC-------------------CcccCCHHHHhhhCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHG-------------------ATVGGSPAEVIKKCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~~~~~~adv   59 (226)
                      |+|+|||+|.+|.++|..|+++  ||+|+++|+++++++.+.+.+                   ...+++..++++++|+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            8999999999999999999988  478999999999999875432                   3355667788899999


Q ss_pred             EEEecCCHH--------------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--C--CcEEecCCC
Q 027255           60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--G--GHFLEAPVS  121 (226)
Q Consensus        60 vi~~~p~~~--------------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g--~~~ld~pv~  121 (226)
                      +|+|+|++.              .++.++   +.+.+.++++++||..||+.|.+++++...+.+.  |  +.+.-+|-+
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PEr  158 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEF  158 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCc
Confidence            999998654              466666   7788889999999999999999999999988764  3  456677755


Q ss_pred             CC
Q 027255          122 GS  123 (226)
Q Consensus       122 g~  123 (226)
                      =.
T Consensus       159 l~  160 (473)
T PLN02353        159 LA  160 (473)
T ss_pred             cC
Confidence            33

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.60  E-value=7.6e-15  Score=128.13  Aligned_cols=119  Identities=16%  Similarity=0.246  Sum_probs=97.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+||| +|.||..+|+.|.++||+|++|||++.             .++++++++||+||+|+|.. ....++   .+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~---~~  161 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVI---AR  161 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHH---HH
Confidence            4799998 999999999999999999999998641             35678888999999999995 456666   66


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE-ecCCCCChHhhccCcEEEEeccCC
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l-d~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                      +.+ ++++++|+|++|+.+.....+.+...   ..|+ ..|++|++...-.+..++++++..
T Consensus       162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~  219 (374)
T PRK11199        162 LPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQ  219 (374)
T ss_pred             HhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCC
Confidence            777 88999999999998888877776532   2588 779999987777778888877643

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.58  E-value=8.3e-15  Score=123.94  Aligned_cols=115  Identities=19%  Similarity=0.346  Sum_probs=87.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~   56 (226)
                      ++|+|||+|.||..||.+|+++|++|++||+++++++.+.+           .|             ++.+++.+ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            47999999999999999999999999999999998776432           23             34556664 5789


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEE-ecCCCCHHHHHHHHHHHHh----cCCcEEe-cCCC
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAITS----KGGHFLE-APVS  121 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv-d~st~~~~~~~~l~~~~~~----~g~~~ld-~pv~  121 (226)
                      ||+||.|+|++.+++..++  .++.+.++++++++ ++|+..+.   ++++.+..    .|++|++ +|++
T Consensus        84 aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~  149 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVM  149 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccC
Confidence            9999999998777666554  46778888899887 56666654   46665532    2778888 4444

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.58  E-value=3.7e-14  Score=123.27  Aligned_cols=134  Identities=15%  Similarity=0.211  Sum_probs=102.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc----ccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----VGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~----~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      ++|+|||+|.||..||+.|.++|++|.+|++++++.+.....+..    ...++.+++++||+||+|+|. ..+.+++  
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl--   77 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL--   77 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH--
Confidence            589999999999999999999999999999988876554444332    235677888999999999998 5678888  


Q ss_pred             cccccc-ccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChH-h-------hccCcEEEEeccC
Q 027255           77 KGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQ-P-------AETGQLVILSAGE  139 (226)
Q Consensus        77 ~~~l~~-~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~-~-------a~~g~~~~~~gg~  139 (226)
                       .++.+ .++++.+|.|.++++....+.+.+. ...+..|+.+ |+.|++. +       .-.+..++++.++
T Consensus        78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~  148 (359)
T PRK06545         78 -AELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDD  148 (359)
T ss_pred             -HHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCC
Confidence             66766 4778999999999998877777665 3457789994 9998742 1       1244445666544

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.58  E-value=1.6e-14  Score=120.98  Aligned_cols=98  Identities=18%  Similarity=0.245  Sum_probs=84.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC----eEEEEcCCchhHHHHHH-CCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      |||+|||+|+||.+|++.|.++|+    +|++|||++++.+.+.+ .|+..+.+..+++++||+||+|+|. ..+++++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence            589999999999999999999885    69999999999988875 6887888899999999999999985 8899998 


Q ss_pred             cccccccccCCCcEEEecCCC-CHHHHH
Q 027255           76 DKGGVLEQICPGKGYIDMSTV-DHETSI  102 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~-~~~~~~  102 (226)
                        +++.+.++++++||+.... +.+..+
T Consensus        81 --~~l~~~~~~~~lvISi~AGi~i~~l~  106 (272)
T PRK12491         81 --NQIKDQIKNDVIVVTIAAGKSIKSTE  106 (272)
T ss_pred             --HHHHHhhcCCcEEEEeCCCCcHHHHH
Confidence              7777778788899997664 444433

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.57  E-value=6.6e-14  Score=117.10  Aligned_cols=135  Identities=21%  Similarity=0.306  Sum_probs=104.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh--HHHHHHCCCccc--CCH-HHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVG--GSP-AEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~--~~~l~~~g~~~~--~s~-~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      |+|+|+|+|.||..+|+.|.++|+.|.+|+++...  .+...+.|+...  .+. .+.+..+|+||+++|- .+..+++ 
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l-   81 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL-   81 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH-
Confidence            68999999999999999999999998777665554  444444555432  233 6677789999999998 6777888 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCCh--HhhccCcEEEEeccCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSK--QPAETGQLVILSAGEK  140 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~--~~a~~g~~~~~~gg~~  140 (226)
                        +.+.+.+++|++|+|.+++.-...+.+.+...+.. .|+.+ |++|++  ..--++..++++-++.
T Consensus        82 --~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~  146 (279)
T COG0287          82 --KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEG  146 (279)
T ss_pred             --HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCC
Confidence              78888999999999999998888888877776555 89988 999994  3334566666665543

>PLN02712 arogenate dehydrogenase

Probab=99.57  E-value=3.3e-14  Score=131.96  Aligned_cols=120  Identities=13%  Similarity=0.213  Sum_probs=96.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-hCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+|||||+|.||..+|+.|.+.|++|++|||+... +...+.|+..+.+.+++++ .+|+||+|+|. ..+.+++   +.
T Consensus       370 ~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi---~~  444 (667)
T PLN02712        370 LKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL---KS  444 (667)
T ss_pred             CEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH---HH
Confidence            68999999999999999999999999999998654 4555678877788888876 58999999996 6777777   55


Q ss_pred             ccc-ccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE-ecCCCCChHh
Q 027255           80 VLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQP  126 (226)
Q Consensus        80 l~~-~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l-d~pv~g~~~~  126 (226)
                      +.. .++++++|+|++++.....+.+.+. ...++.|+ ..|++|.+..
T Consensus       445 l~~~~lk~g~ivvDv~SvK~~~~~~~~~~-l~~~~~~v~~HPm~G~e~~  492 (667)
T PLN02712        445 LPFQRLKRSTLFVDVLSVKEFPRNLFLQH-LPQDFDILCTHPMFGPESG  492 (667)
T ss_pred             HHHhcCCCCcEEEECCCccHHHHHHHHHh-ccCCCceEeeCCCCCcccc
Confidence            543 5778999999999875444444444 34578888 7799998864

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=2e-14  Score=122.68  Aligned_cols=107  Identities=22%  Similarity=0.322  Sum_probs=91.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~~~~~~advv   60 (226)
                      ++|+|||||.+|.++|..++++|++|+.+|.++.+++.+.+.                   | .+.++++.++. .||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~-~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK-ECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc-cCCEE
Confidence            589999999999999999999999999999999998887643                   1 45566666654 89999


Q ss_pred             EEecCCHH---------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255           61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK  111 (226)
Q Consensus        61 i~~~p~~~---------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~  111 (226)
                      ++|+|++-         .++...   +.+.+.|++|.+||--||+.|.+++++...+.+.
T Consensus        89 iI~VPTPl~~~~~pDls~v~~aa---~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~  145 (436)
T COG0677          89 IICVPTPLKKYREPDLSYVESAA---RSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE  145 (436)
T ss_pred             EEEecCCcCCCCCCChHHHHHHH---HHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence            99999752         345555   6788999999999999999999999999999885

>PLN02256 arogenate dehydrogenase

Probab=99.56  E-value=6.1e-14  Score=119.07  Aligned_cols=120  Identities=14%  Similarity=0.259  Sum_probs=96.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+|+|||+|.||..+|+.|.+.|++|++|++++.. +.....|+....+.++++ .++|+||+|+|. ..+.+++   ..
T Consensus        37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl---~~  111 (304)
T PLN02256         37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVL---RS  111 (304)
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHH---Hh
Confidence            68999999999999999999999999999998743 444556877778888876 469999999987 5778887   66


Q ss_pred             c-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChHh
Q 027255           80 V-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQP  126 (226)
Q Consensus        80 l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~~  126 (226)
                      + .+.++++++|+|.+++.-...+.+.+.+. .+..|+-+ |++|.+..
T Consensus       112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~  159 (304)
T PLN02256        112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESG  159 (304)
T ss_pred             hhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCC
Confidence            6 56678999999999987666666666553 35678877 88888753

>PRK07574 formate dehydrogenase; Provisional

Probab=99.54  E-value=7.7e-14  Score=121.59  Aligned_cols=112  Identities=18%  Similarity=0.121  Sum_probs=98.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+.+|++|...|.+|++|||++...+.....|+....+++++++.||+|++++|..++.+.++.  .+.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~  270 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--ADV  270 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HHH
Confidence            589999999999999999999999999999987544444455777678999999999999999999999999883  467


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      +..+++|.++||++....-....+.+.+.+..+.
T Consensus       271 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~  304 (385)
T PRK07574        271 LSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA  304 (385)
T ss_pred             HhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence            7889999999999999999999999999886554

>PLN03139 formate dehydrogenase; Provisional

Probab=99.53  E-value=1.3e-13  Score=120.10  Aligned_cols=113  Identities=12%  Similarity=0.077  Sum_probs=99.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|.+|.+|||++...+.....|+....++++++++||+|++++|..+..+.++.  .+.
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~  277 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KER  277 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HHH
Confidence            579999999999999999999999999999986555555556777777999999999999999999999999873  357


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcE
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~  115 (226)
                      +..+++|.++||++....-....+.+.+.+.-+..
T Consensus       278 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~G  312 (386)
T PLN03139        278 IAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGG  312 (386)
T ss_pred             HhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceE
Confidence            88899999999999999999999999998765543

>PLN02712 arogenate dehydrogenase

Probab=99.51  E-value=2.2e-13  Score=126.52  Aligned_cols=119  Identities=12%  Similarity=0.210  Sum_probs=96.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+|+|||+|.||..+|+.|.+.|++|++|||+... +...+.|+..+.++.+++ +++|+|++|+|. ..+.+++   ++
T Consensus        53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~~  127 (667)
T PLN02712         53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---KS  127 (667)
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---Hh
Confidence            68999999999999999999999999999998544 455567888888888866 469999999996 6788888   55


Q ss_pred             cc-cccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChH
Q 027255           80 VL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQ  125 (226)
Q Consensus        80 l~-~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~  125 (226)
                      +. +.++++++|+|++++.....+.+.+.+. .+..|+.. |++|.+.
T Consensus       128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~-~~~~~v~~HPMaG~e~  174 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP-EDFDIICSHPMFGPQS  174 (667)
T ss_pred             hhhhcCCCCeEEEECCCCcHHHHHHHHHhcC-CCCeEEeeCCcCCCcc
Confidence            54 5678899999999988766666665553 46677777 9998874

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.51  E-value=4e-14  Score=108.60  Aligned_cols=112  Identities=21%  Similarity=0.243  Sum_probs=89.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CC----cccCCHHHHhhhCCeEEEecCCHHH-HHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GA----TVGGSPAEVIKKCTITIGMLADPAA-ALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~----~~~~s~~~~~~~advvi~~~p~~~~-~~~v   73 (226)
                      ++|+|||+|.||..+++.|.+.| ++|++|||++++.+.+.+. +.    ....+..++++++|+|++|+|.+.+ ++.+
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~   99 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL   99 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence            47999999999999999999986 7899999999988876654 32    2456777778999999999998665 3444


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+..    ..++++++++|+++..+.+  .+.+.+++.|+.++++
T Consensus       100 ~~~~----~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g  138 (155)
T cd01065         100 PLPP----SLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG  138 (155)
T ss_pred             CCCH----HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence            3221    3467899999999985544  8888899999988876

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D

Probab=99.51  E-value=2.9e-14  Score=105.42  Aligned_cols=78  Identities=36%  Similarity=0.706  Sum_probs=70.9

Q ss_pred             CCCCcchhhcccccc-cccCcccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 027255          142 LGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV  219 (226)
Q Consensus       142 ~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~  219 (226)
                      .+++.|++++.+.|+ +.+++|.++|++++++||++++++++++.|+|+|+.+.+.++|+.+.++|+|++|+++++++|
T Consensus        44 ~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~  122 (122)
T PF14833_consen   44 AGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL  122 (122)
T ss_dssp             TSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred             cCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence            466788999999985 999999999999999999999999999999999999999999999999999999999999986

...

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.51  E-value=1.7e-14  Score=106.88  Aligned_cols=108  Identities=20%  Similarity=0.335  Sum_probs=73.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||+|||.|++|..+++.|.++||+|. +|+|+++..+++... +...+.++.++++.+|++|+++|+ .++.++.   +
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va---~   86 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVA---E   86 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHH---H
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHH---H
Confidence            689999999999999999999999987 468998888877664 555667788999999999999999 5788888   7


Q ss_pred             ccccc--cCCCcEEEecCCCCHHHHHHHHHHHHhcCCcE
Q 027255           79 GVLEQ--ICPGKGYIDMSTVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        79 ~l~~~--l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~  115 (226)
                      ++...  ..+|++|+.||-..+....   +-++++|+..
T Consensus        87 ~La~~~~~~~g~iVvHtSGa~~~~vL---~p~~~~Ga~~  122 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTSGALGSDVL---APARERGAIV  122 (127)
T ss_dssp             HHHCC--S-TT-EEEES-SS--GGGG---HHHHHTT-EE
T ss_pred             HHHHhccCCCCcEEEECCCCChHHhh---hhHHHCCCeE
Confidence            77666  7799999999976544332   3344556543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.50  E-value=8.7e-13  Score=110.13  Aligned_cols=127  Identities=17%  Similarity=0.223  Sum_probs=92.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC---CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G---~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |+|+|||+|.||..+++.|.++|   ++|.+|+|++++.+.+.+. |+....+..++++++|+||+|+|. ..+++++  
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~--   79 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL--   79 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH--
Confidence            68999999999999999999999   7899999999998888875 888888888989999999999977 6788888  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEec
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA  137 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~g  137 (226)
                       +.+.+.+  +++||.++...+.  ..+.+.+. .+..++.+ +-..+.....+...++.+
T Consensus        80 -~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~-~~~~iv~~-~P~~p~~~~~~~~~i~~~  133 (267)
T PRK11880         80 -SELKGQL--DKLVVSIAAGVTL--ARLERLLG-ADLPVVRA-MPNTPALVGAGMTALTAN  133 (267)
T ss_pred             -HHHHhhc--CCEEEEecCCCCH--HHHHHhcC-CCCcEEEe-cCCchHHHcCceEEEecC
Confidence             6666655  5677777665432  23444432 34555553 112333444444434443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.50  E-value=7.5e-14  Score=119.04  Aligned_cols=105  Identities=14%  Similarity=0.155  Sum_probs=82.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------C---------CCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H---------GATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~---------g~~~~~s~~~~~~~advv   60 (226)
                      .+|+|||+|.||..||.+++.+||+|++||++++..+.+..           .         .+..++++++++++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            37999999999999999999999999999999987654322           2         235677888999999999


Q ss_pred             EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHH
Q 027255           61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAIT  109 (226)
Q Consensus        61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~  109 (226)
                      +.|+|....++..++  .++.+.+++++ |+.+||+. ....++++.+.
T Consensus        88 iEavpE~l~vK~~lf--~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~  132 (321)
T PRK07066         88 QESAPEREALKLELH--ERISRAAKPDA-IIASSTSG-LLPTDFYARAT  132 (321)
T ss_pred             EECCcCCHHHHHHHH--HHHHHhCCCCe-EEEECCCc-cCHHHHHHhcC
Confidence            999999999998887  56777787777 66666653 34455666553

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.49  E-value=2.6e-13  Score=116.56  Aligned_cols=109  Identities=16%  Similarity=0.128  Sum_probs=92.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+++|+.|...|++|++|||+++....+    .....+++++++++|+|++++|...+.+.++.  .++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~  220 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFD--KAM  220 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHH
Confidence            589999999999999999999999999999998654322    23456899999999999999999888777763  467


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcE
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~  115 (226)
                      ++.+++|.++|+++....-....+.+.+.+..+..
T Consensus       221 l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~g  255 (330)
T PRK12480        221 FDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLG  255 (330)
T ss_pred             HhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeE
Confidence            78899999999999988888889999998765543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.48  E-value=9.9e-14  Score=117.14  Aligned_cols=97  Identities=16%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-------------------------CCcccCCHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------------GATVGGSPAEVIK   55 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-------------------------g~~~~~s~~~~~~   55 (226)
                      ++|+|||+|.||..||..|+.+|++|++||++++.++++.+.                         ++..+++.+++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            479999999999999999999999999999999876655321                         3345788889999


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEE-ecCCCCHH
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHE   99 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv-d~st~~~~   99 (226)
                      ++|+||.|+|++..++..++  .++.+.++++++|+ ++||..+.
T Consensus        84 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~~  126 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLPS  126 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCHH
Confidence            99999999998655544443  55777787888885 45555554

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.47  E-value=8.2e-13  Score=112.19  Aligned_cols=116  Identities=18%  Similarity=0.221  Sum_probs=85.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-------------ccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-------------VGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.||..+|..|+++||+|++|+| +++.+.+.+.|..             ..++.+++.+.+|+||+|+|. 
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-   78 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-   78 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence            8999999999999999999999999999999 8888888776532             134556666889999999987 


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc----CCcEEecCCCC
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSG  122 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~----g~~~ld~pv~g  122 (226)
                      .++++++   +.+.+.+.++++||.+.+.- ...+.+.+.+.+.    ++.++.++..+
T Consensus        79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~  133 (305)
T PRK12921         79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNG  133 (305)
T ss_pred             cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECC
Confidence            5677877   67777777788888776542 2233455544332    34455555444

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.47  E-value=3.7e-13  Score=115.76  Aligned_cols=110  Identities=13%  Similarity=0.157  Sum_probs=93.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|+.|...|++|.+|||++... .....+.. ..++++++++||+|++++|..+..+.++.  .+.
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~~  226 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMIN--EER  226 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccC--HHH
Confidence            479999999999999999999999999999987643 22334554 35899999999999999999888888873  357


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ++.+++|.++||+++...-..+.+.+.+.+..+.
T Consensus       227 ~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~  260 (333)
T PRK13243        227 LKLMKPTAILVNTARGKVVDTKALVKALKEGWIA  260 (333)
T ss_pred             HhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence            7889999999999999999999999999876544

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.47  E-value=3.4e-13  Score=114.34  Aligned_cols=106  Identities=15%  Similarity=0.289  Sum_probs=90.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|||||+|.||+.+|+.+...|++|++|||+...      .+.. ...++++++++||+|++++|..++.+.++.  .+
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~  194 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--SK  194 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--HH
Confidence            47999999999999999988889999999998542      2332 256899999999999999999899988873  45


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      .+..+++|.++||+++..+.....+.+.+.+..+.
T Consensus       195 ~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~  229 (303)
T PRK06436        195 MLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDK  229 (303)
T ss_pred             HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCce
Confidence            67889999999999999999999999999876443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.47  E-value=4.6e-13  Score=114.24  Aligned_cols=128  Identities=20%  Similarity=0.274  Sum_probs=86.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----C--------------CcccCCHHHHhhhCCeEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----G--------------ATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g--------------~~~~~s~~~~~~~advvi   61 (226)
                      ++|+|||+|.||..||..|+++|++|++||+++++.+.+.+.     +              +..++++.+++++||+||
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            479999999999999999999999999999999988776541     2              245677888889999999


Q ss_pred             EecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc----CCcEEecCCCCChHhhccCcEEEEec
Q 027255           62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSA  137 (226)
Q Consensus        62 ~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~----g~~~ld~pv~g~~~~a~~g~~~~~~g  137 (226)
                      +|+|.+..+...++  ..+.+.++++++|+ ++|..+. ..++++.+...    ++++.+.|..        +.++.++.
T Consensus        85 ~av~~~~~~~~~v~--~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~~~ig~h~~~p~~~--------~~l~~i~~  152 (311)
T PRK06130         85 EAVPEKLELKRDVF--ARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPERFVGTHFFTPADV--------IPLVEVVR  152 (311)
T ss_pred             EeccCcHHHHHHHH--HHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcccEEEEccCCCCcc--------CceEEEeC
Confidence            99998765444333  44555565555554 3333322 33566655331    4444444422        22455666


Q ss_pred             cCC
Q 027255          138 GEK  140 (226)
Q Consensus       138 g~~  140 (226)
                      |+.
T Consensus       153 g~~  155 (311)
T PRK06130        153 GDK  155 (311)
T ss_pred             CCC
Confidence            653

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.45  E-value=7.4e-13  Score=125.12  Aligned_cols=121  Identities=17%  Similarity=0.205  Sum_probs=101.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHCCCc--ccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGAT--VGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~g~~--~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      .+|+|||+|.||..+++.|.++|  ++|++|||++++.+.+.+.|+.  ...+..++++++|+||+|+|. ..+++++  
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl--   80 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVL--   80 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHH--
Confidence            47999999999999999999998  4899999999998888877764  456678888999999999987 5788888  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE-ecCCCCChH
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQ  125 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l-d~pv~g~~~  125 (226)
                       ..+.+.++++.+|+|++++.....+.+.+.+....++|+ ..|++|++.
T Consensus        81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~  129 (735)
T PRK14806         81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEK  129 (735)
T ss_pred             -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCc
Confidence             677777888999999999998888888777655556654 559887763

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.44  E-value=7.9e-13  Score=113.75  Aligned_cols=109  Identities=11%  Similarity=0.130  Sum_probs=89.8

Q ss_pred             CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+|||||+|.||+.+|++|+ ..|.+|++||+++....   ..++....+++++++++|+|++++|.....+.++ + .+
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li-~-~~  221 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF-N-AD  221 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc-C-HH
Confidence            68999999999999999994 46889999999876431   2234556789999999999999999977776654 2 24


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      .++.+++|.++||+|+........+.+.+.+..+.
T Consensus       222 ~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  256 (332)
T PRK08605        222 LFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK  256 (332)
T ss_pred             HHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence            67789999999999999999999999999876554

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.43  E-value=3.8e-13  Score=113.75  Aligned_cols=117  Identities=21%  Similarity=0.334  Sum_probs=84.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH--------------CCC-------------cccCCHHHHh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--------------HGA-------------TVGGSPAEVI   54 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~--------------~g~-------------~~~~s~~~~~   54 (226)
                      +|+|||+|.||..||..|+.+|++|++||++++.++...+              .|.             ...++. +++
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~   83 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESL   83 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHh
Confidence            7999999999999999999999999999999988764321              121             234444 577


Q ss_pred             hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc----CCcEEe-cCCCCC
Q 027255           55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLE-APVSGS  123 (226)
Q Consensus        55 ~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~----g~~~ld-~pv~g~  123 (226)
                      +++|+||.|+|.+..++..++  .++.+.++++++++..++.  ....++++.+...    |.+|.+ +|+++.
T Consensus        84 ~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~ig~hf~~P~~~~~~  153 (291)
T PRK06035         84 SDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSG--IMIAEIATALERKDRFIGMHWFNPAPVMKL  153 (291)
T ss_pred             CCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCcccEEEEecCCCcccCcc
Confidence            899999999999776555554  4566777788888755443  2345566665432    677777 666654

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.43  E-value=7.7e-13  Score=111.62  Aligned_cols=90  Identities=24%  Similarity=0.248  Sum_probs=74.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||++||++|...|++|++|+|.....+.....|..+ .++++++++||+|++++|++.+ +.++.  +++
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~t-~~V~~--~ei   92 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEV   92 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChHH-HHHHH--HHH
Confidence            4799999999999999999999999999988655545555567765 4899999999999999999554 77774  458


Q ss_pred             ccccCCCcEEEecC
Q 027255           81 LEQICPGKGYIDMS   94 (226)
Q Consensus        81 ~~~l~~g~ivvd~s   94 (226)
                      ++.+++|++++-.-
T Consensus        93 l~~MK~GaiL~f~h  106 (335)
T PRK13403         93 EENLREGQMLLFSH  106 (335)
T ss_pred             HhcCCCCCEEEECC
Confidence            88999999876543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.42  E-value=9.5e-13  Score=106.94  Aligned_cols=91  Identities=26%  Similarity=0.415  Sum_probs=73.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------CCc---ccCCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------GAT---VGGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------g~~---~~~s~~~~~~~advvi~~~p~~~   68 (226)
                      |||+||| +|+||+.+++.|+++||+|.+|+|++++.+.+...        |..   ...+..++++++|+||+|+|. .
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-D   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-H
Confidence            8999997 89999999999999999999999999988776542        221   234667888999999999987 6


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      ++++++   +++.+.+ ++++|||++..
T Consensus        80 ~~~~~l---~~l~~~l-~~~vvI~~~ng  103 (219)
T TIGR01915        80 HVLKTL---ESLRDEL-SGKLVISPVVP  103 (219)
T ss_pred             HHHHHH---HHHHHhc-cCCEEEEeccC
Confidence            677777   5565555 45899999875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.42  E-value=6.7e-13  Score=104.47  Aligned_cols=111  Identities=18%  Similarity=0.221  Sum_probs=90.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+...|.+|++|||+..........+. ...++++++++||+|++++|..+..+.++.  ...
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~--~~~  113 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLIN--AEF  113 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBS--HHH
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeee--eee
Confidence            47999999999999999999999999999999887665666666 455999999999999999997777777662  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      +..+++|.++|+++....-....+.+.+++.-+.
T Consensus       114 l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~  147 (178)
T PF02826_consen  114 LAKMKPGAVLVNVARGELVDEDALLDALESGKIA  147 (178)
T ss_dssp             HHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred             eeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence            7889999999999998888888899999876443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.42  E-value=4.1e-12  Score=107.75  Aligned_cols=91  Identities=20%  Similarity=0.285  Sum_probs=75.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-----------cCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------GGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |||+|||+|.||..+|..|.++||+|++|+|++++.+.+.+.|...           ..++.++ +.+|+||++++. .+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence            8999999999999999999999999999999988888888777532           4455555 789999999987 56


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +++++   ..+.+.+.++++||.+.+.
T Consensus        79 ~~~~~---~~l~~~l~~~~~iv~~~nG  102 (304)
T PRK06522         79 LPAAL---PSLAPLLGPDTPVLFLQNG  102 (304)
T ss_pred             HHHHH---HHHhhhcCCCCEEEEecCC
Confidence            78887   7777777777788776654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.41  E-value=1.1e-12  Score=111.76  Aligned_cols=110  Identities=17%  Similarity=0.338  Sum_probs=91.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++++...+..  .....++++++++||+|++++|..++.+.++.  .+.
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~~  212 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIIN--QQL  212 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhH--HHH
Confidence            47999999999999999999999999999998754321111  11235789999999999999999999998884  357


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      +..+++|.++||++....-....+.+.+.+..+.
T Consensus       213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~  246 (312)
T PRK15469        213 LEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK  246 (312)
T ss_pred             HhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence            7889999999999999888888999999876554

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.41  E-value=1.8e-12  Score=102.72  Aligned_cols=91  Identities=21%  Similarity=0.315  Sum_probs=72.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHC-CCc-ccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAH-GAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~-g~~-~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      |+|+|+|.|+||.++|++|+++||+|.+-+|+.+ +.+...+. +.. ...+..++++.+|+||+++|. .++..++   
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~---   77 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVL---   77 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHH---
Confidence            6899999999999999999999999999866554 44444332 332 345788899999999999999 6777887   


Q ss_pred             cccccccCCCcEEEecCCC
Q 027255           78 GGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~   96 (226)
                      .++...+ .|++|||++.-
T Consensus        78 ~~l~~~~-~~KIvID~tnp   95 (211)
T COG2085          78 AELRDAL-GGKIVIDATNP   95 (211)
T ss_pred             HHHHHHh-CCeEEEecCCC
Confidence            6676666 49999999874

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.40  E-value=6.8e-12  Score=103.39  Aligned_cols=208  Identities=13%  Similarity=0.095  Sum_probs=120.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC---e-EEEEcC-CchhHHHHHH-CCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF---K-VTVWNR-TLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~---~-V~~~dr-~~~~~~~l~~-~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      |||+|||+|.||++++..|.++|+   + +++++| ++++.+.+.+ .++..+.+.+++++++|+||+++|+ ...++++
T Consensus         5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~v~   83 (245)
T PRK07634          5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEELL   83 (245)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHHHH
Confidence            579999999999999999998873   3 778887 4678887776 4777778899999999999999988 5678887


Q ss_pred             hcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCc-EEecCCCCChHhhccCcEEEEeccCC--CCCCCcchhh
Q 027255           75 FDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGH-FLEAPVSGSKQPAETGQLVILSAGEK--DLGGIANPMF  150 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~-~ld~pv~g~~~~a~~g~~~~~~gg~~--~~~~~~s~~~  150 (226)
                         +++.+.++ +++||+++.. +.+.   +.+.+.. +.. ..-.|-+..  ....|...+.++.+.  ........++
T Consensus        84 ---~~l~~~~~-~~~vis~~~gi~~~~---l~~~~~~-~~~v~r~~Pn~a~--~v~~g~~~~~~~~~~~~~~~~~v~~lf  153 (245)
T PRK07634         84 ---AELSPLLS-NQLVVTVAAGIGPSY---LEERLPK-GTPVAWIMPNTAA--EIGKSISLYTMGQSVNETHKETLQLIL  153 (245)
T ss_pred             ---HHHHhhcc-CCEEEEECCCCCHHH---HHHHcCC-CCeEEEECCcHHH--HHhcCCeEEeeCCCCCHHHHHHHHHHH
Confidence               66666664 6788888764 4443   4444432 222 233453332  233443333333221  0011112223


Q ss_pred             cccccc--cccCcccC-----CccchHHHHHHHHHHHHHhhcCCCchHH-HHHHHHHHHHHHcCCCCCChHHHHHHH
Q 027255          151 KGKGPT--MLQSNYAP-----AFPLKHQQKDMRLALALGDENAVSMPIA-AAANEAFKKARSLGLGDNDFSAVFEVV  219 (226)
Q Consensus       151 ~~~~~~--~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~g~~~p~~-~~~~~~~~~a~~~g~g~~d~~~~~~~~  219 (226)
                      +..+..  +...++..     +..-..+..=++.+.+.+.+.|++-... +.+.+.+..+.+.-....+...+.+.+
T Consensus       154 ~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~l~~~v  230 (245)
T PRK07634        154 KGIGTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQTQDPANLREQV  230 (245)
T ss_pred             HhCCCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhC
Confidence            322221  11112211     2222344455667777888889986553 334444444433211124566665543

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.36  E-value=3.7e-12  Score=115.82  Aligned_cols=111  Identities=13%  Similarity=0.156  Sum_probs=94.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|.+|++||+.... +.....|+..++++++++++||+|++++|..++.+.++.  .+.
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~  215 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIG--AEE  215 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HHH
Confidence            47999999999999999999999999999986332 233445776667899999999999999999888888872  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ++.+++|.++||++....-....+.+.+.+..+.
T Consensus       216 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  249 (525)
T TIGR01327       216 LAKMKKGVIIVNCARGGIIDEAALYEALEEGHVR  249 (525)
T ss_pred             HhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCee
Confidence            7789999999999999999999999999887664

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.36  E-value=7.8e-12  Score=103.47  Aligned_cols=91  Identities=26%  Similarity=0.392  Sum_probs=78.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC----CeEEEEcCCchhHHHHHH-CCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G----~~V~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      |||||||+|+||.+|+..|.++|    .+|++.||++++.+.+.+ .|+..+.+..++++++|+||+++ .|+.+++++ 
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl-   79 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL-   79 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence            68999999999999999999999    589999999999975544 57766778889999999999999 558899999 


Q ss_pred             cccccccccCCCcEEEecCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~   96 (226)
                        ..+.+ ..++++||.....
T Consensus        80 --~~l~~-~~~~~lvISiaAG   97 (266)
T COG0345          80 --SKLKP-LTKDKLVISIAAG   97 (266)
T ss_pred             --HHhhc-ccCCCEEEEEeCC
Confidence              77766 6789999997664

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.36  E-value=1.2e-11  Score=107.38  Aligned_cols=120  Identities=13%  Similarity=0.249  Sum_probs=92.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLR-NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ++|+|||+ |.||..+|+.|.+ .|++|++||++.+           ...++.+++++||+||+|+|- ..+.+++   +
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l---~   69 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALI---E   69 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHH---H
Confidence            58999999 9999999999986 4899999998522           234677889999999999998 5677777   6


Q ss_pred             ccccc---cCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChH-hhccCcEEEEeccC
Q 027255           79 GVLEQ---ICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQ-PAETGQLVILSAGE  139 (226)
Q Consensus        79 ~l~~~---l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~-~a~~g~~~~~~gg~  139 (226)
                      ++.+.   ++++++|+|.+++.....+.+    .+.+..|+.+ |++|++. ..-++...+++.+.
T Consensus        70 ~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~  131 (370)
T PRK08818         70 EYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEAR  131 (370)
T ss_pred             HHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCC
Confidence            66654   789999999999986655554    2346778888 9999864 33356666766543

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.35  E-value=5e-12  Score=106.47  Aligned_cols=102  Identities=20%  Similarity=0.263  Sum_probs=74.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHH-----------HHHHCC-------------CcccCCHHHHhhhC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-----------ELVAHG-------------ATVGGSPAEVIKKC   57 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-----------~l~~~g-------------~~~~~s~~~~~~~a   57 (226)
                      ||+|||+|.||.+||..|+++|++|++||+++++++           .+.+.|             +..+++.+ .+++|
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~a   83 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDA   83 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence            699999999999999999999999999999999875           333444             23355654 47899


Q ss_pred             CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHH
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAI  108 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~  108 (226)
                      |+||+|+|.+..++..++  ..+.+.++++++++. +|.+.... .+++.+
T Consensus        84 DlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s-~ts~~~~~-~la~~~  130 (282)
T PRK05808         84 DLVIEAATENMDLKKKIF--AQLDEIAKPEAILAT-NTSSLSIT-ELAAAT  130 (282)
T ss_pred             CeeeecccccHHHHHHHH--HHHHhhCCCCcEEEE-CCCCCCHH-HHHHhh
Confidence            999999988666664444  557777878887733 33322222 556655

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.35  E-value=9.8e-12  Score=104.06  Aligned_cols=116  Identities=18%  Similarity=0.222  Sum_probs=90.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      |||||||+|.||+.++++|.+.  ++++. +|||++++.+++.+. |. ..+.+++++++++|+|++|+|++.+ .++. 
T Consensus         7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~-   84 (271)
T PRK13302          7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAIV-   84 (271)
T ss_pred             eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHHH-
Confidence            5899999999999999999873  78865 889999998877654 53 5678999999999999999998654 4443 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcE-EecCCCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF-LEAPVSGS  123 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~-ld~pv~g~  123 (226)
                        .   ..++.|+.++..++......+++.+.++++|..+ +...-.++
T Consensus        85 --~---~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g  128 (271)
T PRK13302         85 --E---PVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLG  128 (271)
T ss_pred             --H---HHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHh
Confidence              2   4456788777777776777899999999998875 54333333

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.34  E-value=6.1e-12  Score=114.39  Aligned_cols=113  Identities=17%  Similarity=0.230  Sum_probs=95.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||+... +.....|+..+ ++++++++||+|++++|..+..+.++.  .+.
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~  216 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEE  216 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHH
Confidence            47999999999999999999999999999996542 33345577666 899999999999999999888888873  357


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc--EEe
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH--FLE  117 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~--~ld  117 (226)
                      ++.+++|.++||++....-....+.+.+.+.-+.  .+|
T Consensus       217 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLD  255 (526)
T PRK13581        217 LAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALD  255 (526)
T ss_pred             HhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEe
Confidence            7889999999999999998999999999876543  355

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.32  E-value=1.4e-11  Score=103.52  Aligned_cols=92  Identities=17%  Similarity=0.377  Sum_probs=74.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC----CeEEEEcCCc-hhHHHHHHC--CCcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTL-SKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G----~~V~~~dr~~-~~~~~l~~~--g~~~~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      |+|+|||+|+||.+|++.|.++|    ++|++|+|++ ++.+.+...  +...+.+..++++++|+||+|+|. +.++++
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence            58999999999999999999998    7899999865 445555443  344567888889999999999985 778888


Q ss_pred             hhcccccccccCCCcEEEecCCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +   .++.+.+.++++||.....
T Consensus        81 l---~~l~~~l~~~~~ivS~~aG  100 (277)
T PRK06928         81 L---KDCAPVLTPDRHVVSIAAG  100 (277)
T ss_pred             H---HHHHhhcCCCCEEEEECCC
Confidence            8   7777778788888887764

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.32  E-value=1.1e-11  Score=105.68  Aligned_cols=95  Identities=24%  Similarity=0.211  Sum_probs=75.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHH-HHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-LVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+|||+|+||+++|++|...|++|++++++.++... ..+.|+... +++++++++|+|++++|+..+ ..++.  ++
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~~--~~   93 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVYE--EE   93 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHHH--HH
Confidence            57999999999999999999999999998887554433 444577655 899999999999999998554 67763  35


Q ss_pred             cccccCCCcEEEecCCCCHH
Q 027255           80 VLEQICPGKGYIDMSTVDHE   99 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~   99 (226)
                      +.+.+++|++|+-+.-....
T Consensus        94 I~~~Lk~g~iL~~a~G~~i~  113 (330)
T PRK05479         94 IEPNLKEGAALAFAHGFNIH  113 (330)
T ss_pred             HHhcCCCCCEEEECCCCChh
Confidence            77888899988665554443

>PLN02928 oxidoreductase family protein

Probab=99.30  E-value=1.8e-11  Score=105.81  Aligned_cols=111  Identities=16%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH------------HHCCCcccCCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL------------VAHGATVGGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l------------~~~g~~~~~s~~~~~~~advvi~~~p~~~   68 (226)
                      ++|||||+|.||+.+|+.|...|.+|++|||+..+....            ..... ...++++++++||+|++++|...
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~  238 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTK  238 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCCh
Confidence            479999999999999999999999999999974432111            11112 34689999999999999999888


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ..+.++.  .+.+..+++|.++||++....-....+.+.+.+.-+.
T Consensus       239 ~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~  282 (347)
T PLN02928        239 ETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG  282 (347)
T ss_pred             HhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence            8888773  3567889999999999998888888999999876554

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.29  E-value=1.7e-11  Score=102.06  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=75.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC----eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||+|||+|+||.+|++.|.++++    ++++++|++++.      +...+.++.++++++|+||+|+|. .++++++  
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl--   74 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKP-DLAGKVL--   74 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCH-HHHHHHH--
Confidence            799999999999999999998872    499999987652      445567888888999999999965 7899999  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHH
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKI  104 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l  104 (226)
                       .++.+.+.++.+|.+++.++.+..+.+
T Consensus        75 -~~i~~~l~~~~iIS~~aGi~~~~l~~~  101 (260)
T PTZ00431         75 -LEIKPYLGSKLLISICGGLNLKTLEEM  101 (260)
T ss_pred             -HHHHhhccCCEEEEEeCCccHHHHHHH
Confidence             777777766667777777877666543

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=99.29  E-value=3.4e-11  Score=100.55  Aligned_cols=111  Identities=23%  Similarity=0.374  Sum_probs=86.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||||||+|.||..+++.+.+.  +++ +.+|||++++.+.+.+. +...+.+.++++.++|+|++|+|. ....+..  
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~--   78 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVV--   78 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHH--
Confidence            7999999999999999999876  466 55899999998887654 677788999988899999999976 4455554  


Q ss_pred             ccccccccCCCcEEEecCC---CCHHHHHHHHHHHHhcCCc-EEec
Q 027255           77 KGGVLEQICPGKGYIDMST---VDHETSIKISRAITSKGGH-FLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st---~~~~~~~~l~~~~~~~g~~-~ld~  118 (226)
                       .   ..++.|+.++.+|+   .++...+++.+.++++|.. +++.
T Consensus        79 -~---~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s  120 (265)
T PRK13304         79 -P---KSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS  120 (265)
T ss_pred             -H---HHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence             2   33456666666666   3677788999999888865 4544

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.28  E-value=1.7e-11  Score=106.75  Aligned_cols=111  Identities=19%  Similarity=0.223  Sum_probs=88.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHH----HHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA----AALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~----~~~~v~~~   76 (226)
                      ++|||||+|+||+.+|+.+...|++|.+||+.....     .+.....++++++++||+|++++|...    ..+.++ +
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li-~  190 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL-D  190 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccC-C
Confidence            479999999999999999999999999999864321     122335689999999999999999754    344444 3


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCC--cEEec
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--HFLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~--~~ld~  118 (226)
                       .+.+..+++|.++||++....-....+.+.+.+..+  ..+|.
T Consensus       191 -~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV  233 (381)
T PRK00257        191 -EAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDV  233 (381)
T ss_pred             -HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeC
Confidence             246678999999999999999999999999977644  34565

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.28  E-value=2.5e-11  Score=103.76  Aligned_cols=111  Identities=20%  Similarity=0.200  Sum_probs=93.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+..-|.+|.+||+...+- .....+.....++++++++||+|++.+|-.+..+.++.  .+.
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~~  219 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AEE  219 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HHH
Confidence            479999999999999999999999999999943332 22234667778999999999999999999888988883  345


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      +..+++|.++|+++....-+...|.+.+.+..+.
T Consensus       220 ~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~  253 (324)
T COG0111         220 LAKMKPGAILINAARGGVVDEDALLAALDSGKIA  253 (324)
T ss_pred             HhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence            6789999999999999888888999998775443

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.26  E-value=4.3e-11  Score=102.01  Aligned_cols=94  Identities=21%  Similarity=0.253  Sum_probs=71.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcC-CchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+|||+|+||.++|++|...|++|+++++ ++++.+.+.+.|+... +..++++++|+|++++|+..+...++   ++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~e   79 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---AE   79 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---HH
Confidence            5899999999999999999999999887654 4456666777788654 58889999999999999864666555   56


Q ss_pred             cccccCCCcEEEecCCCCH
Q 027255           80 VLEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~   98 (226)
                      +.+.++++.+|.-+.-.+.
T Consensus        80 i~~~l~~g~iVs~aaG~~i   98 (314)
T TIGR00465        80 IQPLLKEGKTLGFSHGFNI   98 (314)
T ss_pred             HHhhCCCCcEEEEeCCccH
Confidence            7777877764433333443

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.26  E-value=2.6e-11  Score=95.56  Aligned_cols=93  Identities=17%  Similarity=0.287  Sum_probs=69.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------C-------------CCcccCCHHHHhhhC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H-------------GATVGGSPAEVIKKC   57 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~~~~~~a   57 (226)
                      ||+|||+|.||..||..++.+|++|++||++++..+...+           .             .+..+++++++. ++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            7999999999999999999999999999999997654321           1             245678888888 99


Q ss_pred             CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~   97 (226)
                      |+||.++|.+-.++.-+|  ..+.+.+++++++...|+.-
T Consensus        80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl  117 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSL  117 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS
T ss_pred             heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCC
Confidence            999999999888777665  55777788888877665543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.24  E-value=7.9e-11  Score=100.64  Aligned_cols=110  Identities=18%  Similarity=0.206  Sum_probs=93.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      +++||||+|.+|+++|+++..-|.+|..|||++. .+.-...+....+ ++++++++|+|++.+|-..+.+.++.  ...
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~~  222 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AEE  222 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HHH
Confidence            5899999999999999999977889999999876 3333334466655 99999999999999999899888873  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ++.+++|.++|+++....-+.+.+.+.+++..+.
T Consensus       223 l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~  256 (324)
T COG1052         223 LAKMKPGAILVNTARGGLVDEQALIDALKSGKIA  256 (324)
T ss_pred             HHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence            7889999999999999999999999999886544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=99.24  E-value=1.7e-11  Score=104.78  Aligned_cols=108  Identities=17%  Similarity=0.224  Sum_probs=85.9

Q ss_pred             eEEEEecChhHHHHHHHHHh--CCCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      +|+|||+|.||..+++.+..  ...+|++|||++++.+.+.+.    |  +.++.+++++++++|+|++++|..   +.+
T Consensus       127 ~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pv  203 (314)
T PRK06141        127 RLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPL  203 (314)
T ss_pred             eEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCE
Confidence            79999999999999986654  447899999999999888764    4  556789999999999998888764   333


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +.     .+.+++|+ +|++.+..+...+++...+.+++..|+|-
T Consensus       204 l~-----~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~  242 (314)
T PRK06141        204 VR-----GEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT  242 (314)
T ss_pred             ec-----HHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence            31     14567888 77888777778888888887788788886

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.23  E-value=5.9e-11  Score=104.74  Aligned_cols=108  Identities=17%  Similarity=0.167  Sum_probs=91.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+...|.+|.+||+++..    ...++....++++++++||+|++++|..+..+.++.  .+.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~--~~~  225 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG--AEE  225 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC--HHH
Confidence            47999999999999999999999999999987432    112445567899999999999999998888888773  346


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      +..+++|.++|+++....-....+.+.+.+..+.
T Consensus       226 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  259 (409)
T PRK11790        226 LALMKPGAILINASRGTVVDIDALADALKSGHLA  259 (409)
T ss_pred             HhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence            7889999999999999998999999999887554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.23  E-value=7.2e-11  Score=99.57  Aligned_cols=109  Identities=21%  Similarity=0.216  Sum_probs=83.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      .+|+|||+|.||+.+|+.|...|.+|++++|++++.+.+.+.|....  .++.+.++++|+||.++|..-..+       
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~-------  224 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTA-------  224 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCH-------
Confidence            37999999999999999999999999999999988877776676543  356778889999999998742112       


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      ..++.++++.++||+++..-.+.  + +.+++.|+..+-+|
T Consensus       225 ~~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~  262 (287)
T TIGR02853       225 DVLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP  262 (287)
T ss_pred             HHHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence            23466788999999998543322  2 45577888877655

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.21  E-value=1.2e-10  Score=99.87  Aligned_cols=110  Identities=11%  Similarity=0.096  Sum_probs=90.3

Q ss_pred             CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|||||+|.+|+.+|+.+. .-|.+|..|||.... +.....++.. .++++++++||+|++++|-.+..+.++.  ..
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~--~~  221 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG--AE  221 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC--HH
Confidence            47999999999999999997 778899999987432 2223345544 4899999999999999999888888773  34


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      .+..+++|.++|+++....-....+.+.+.+.-+.
T Consensus       222 ~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~  256 (323)
T PRK15409        222 QFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH  256 (323)
T ss_pred             HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence            67889999999999999888889999999876543

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.21  E-value=6.3e-11  Score=90.33  Aligned_cols=91  Identities=26%  Similarity=0.311  Sum_probs=68.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+|||.|+.|.+.|.||.+.|++|++..|..+ ..++..+.|.++ .+..|+++.+|+|++.+|+ +...+++.  +.
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD-~~q~~vy~--~~   80 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPD-EVQPEVYE--EE   80 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-H-HHHHHHHH--HH
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCCh-HHHHHHHH--HH
Confidence            4799999999999999999999999999988877 666777778876 4799999999999999998 55556653  56


Q ss_pred             cccccCCCcEEEecCC
Q 027255           80 VLEQICPGKGYIDMST   95 (226)
Q Consensus        80 l~~~l~~g~ivvd~st   95 (226)
                      +.+.+++|+.++-..-
T Consensus        81 I~p~l~~G~~L~fahG   96 (165)
T PF07991_consen   81 IAPNLKPGATLVFAHG   96 (165)
T ss_dssp             HHHHS-TT-EEEESSS
T ss_pred             HHhhCCCCCEEEeCCc
Confidence            8899999998876543

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.18  E-value=9.1e-11  Score=98.64  Aligned_cols=74  Identities=20%  Similarity=0.278  Sum_probs=64.4

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+|||.| .||.+||.+|.++|++|++|++...              ++++++++||+||+|++.+..++..+     
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~-----  220 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW-----  220 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh-----
Confidence            479999996 9999999999999999999987643              78899999999999999987666554     


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                          +++|.+|||+++..
T Consensus       221 ----ik~GaiVIDvgin~  234 (301)
T PRK14194        221 ----LKPGAVVIDVGINR  234 (301)
T ss_pred             ----ccCCcEEEEecccc
Confidence                67999999998653

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.17  E-value=4.6e-10  Score=82.23  Aligned_cols=108  Identities=20%  Similarity=0.299  Sum_probs=86.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeE-EEEcCCchhHHHHHH-CCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVA-HGATVGGSPAEVIK--KCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V-~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~   74 (226)
                      |||+|||+|.+|+.....+.+.  ++++ .++|+++++.+.+.+ .|+..++|.+++++  +.|+|++++|+..+.+.+.
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~   80 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK   80 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence            6899999999999999999876  4564 478999999888754 58889999999998  6899999999977776654


Q ss_pred             hcccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcE
Q 027255           75 FDKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        75 ~~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~  115 (226)
                             ..++.|. ++++-- ..++++.+++.+.++++|..+
T Consensus        81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~  116 (120)
T PF01408_consen   81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV  116 (120)
T ss_dssp             -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred             -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence                   3344555 455543 358999999999999988764

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.17  E-value=1.5e-10  Score=100.65  Aligned_cols=111  Identities=15%  Similarity=0.175  Sum_probs=86.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHH----HHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA----ALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~----~~~v~~~   76 (226)
                      ++|||||+|+||+.+|+.|...|.+|.+||+.....    ... ....++++++++||+|++++|-...    ...++ +
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li-~  190 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA-D  190 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCccccccccc-C
Confidence            479999999999999999999999999999753321    111 1346899999999999999995442    44444 2


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCC--cEEec
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--HFLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~--~~ld~  118 (226)
                       .+.+..+++|.++||++....-....+.+.+++..+  ..+|.
T Consensus       191 -~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV  233 (378)
T PRK15438        191 -EKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDV  233 (378)
T ss_pred             -HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEec
Confidence             345678999999999999988888999999877643  34565

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.16  E-value=1.4e-10  Score=98.89  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=89.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+..-|.+|..|||+....    ..+.. ..++++++++||+|++++|-.+..+.++.  ...
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~~  218 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIA--YKE  218 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccC--HHH
Confidence            479999999999999999999999999999974321    12333 45899999999999999998888888773  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ++.+++|.++|+++....-....+.+.+++..+.
T Consensus       219 ~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~  252 (311)
T PRK08410        219 LKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY  252 (311)
T ss_pred             HHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence            7889999999999999888889999999875444

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=99.16  E-value=2.5e-10  Score=91.44  Aligned_cols=157  Identities=17%  Similarity=0.157  Sum_probs=103.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhh-hCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |+|+|+|+|+||+.+|++|.+.|++|+++|+++++.+.+.+. +....++ .++.. ++|+++.|........+.+    
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~----  103 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI----  103 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH----
Confidence            579999999999999999999999999999999998888766 7665544 44543 7999997765432223333    


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC--CCChHhhccCcEEEEeccCCCCCCCcchhhcccccc
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV--SGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT  156 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv--~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~~~  156 (226)
                         +.+ +.++|++..+... +..+-.+.++++|+.|++--+  +|+.          .+           .+++...  
T Consensus       104 ---~~l-~~~~v~~~AN~~~-~~~~~~~~L~~~Gi~~~Pd~~~NaGGv----------~~-----------~~~e~~~--  155 (200)
T cd01075         104 ---PQL-KAKAIAGAANNQL-ADPRHGQMLHERGILYAPDYVVNAGGL----------IN-----------VADELYG--  155 (200)
T ss_pred             ---HHc-CCCEEEECCcCcc-CCHhHHHHHHHCCCEEeCceeeeCcCc----------ee-----------ehhHHhC--
Confidence               334 3567777766432 215667888999999987432  2321          11           1111111  


Q ss_pred             cccCccc-CCccchHHHHHHHHHHHHHhhcCCCchHHH
Q 027255          157 MLQSNYA-PAFPLKHQQKDMRLALALGDENAVSMPIAA  193 (226)
Q Consensus       157 ~~~~~~~-~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~  193 (226)
                         +... ..-.++...+.+..+++.+++.++++....
T Consensus       156 ---~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA  190 (200)
T cd01075         156 ---GNEARVLAKVEAIYDTLLEIFAQAKQDGITTLEAA  190 (200)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence               0010 011344557888888999999988765443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.13  E-value=1.5e-10  Score=98.87  Aligned_cols=105  Identities=18%  Similarity=0.209  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHhCCCeEEEEcCCchh-------HHH-----------HHHCC-------------CcccCC--HHHHhhhC
Q 027255           11 MGKAISMNLLRNGFKVTVWNRTLSK-------CDE-----------LVAHG-------------ATVGGS--PAEVIKKC   57 (226)
Q Consensus        11 mG~~~A~~l~~~G~~V~~~dr~~~~-------~~~-----------l~~~g-------------~~~~~s--~~~~~~~a   57 (226)
                      ||..||..++.+|++|++||++++.       +++           +.+.|             ++.+.+  +.+++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            8999999999999999999999842       111           12222             333433  66888999


Q ss_pred             CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHH----hcCCcEEecC
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAIT----SKGGHFLEAP  119 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~----~~g~~~ld~p  119 (226)
                      |+||.|+|.+..++..+|++  +.+.+++++++  +|++++....++++.+.    -.|.+|++.|
T Consensus        81 D~ViEav~E~~~~K~~~f~~--l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp  142 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRW--LGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPA  142 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHH--HHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCcc
Confidence            99999999999999998854  77788888888  55566666677888773    3488999998

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.12  E-value=4.4e-10  Score=96.00  Aligned_cols=106  Identities=14%  Similarity=0.063  Sum_probs=88.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+..-|.+|+.|+|....  ..   .. ...++++++++||+|++++|-.+..+.++.  .+.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~~  219 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLIN--AET  219 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccC--HHH
Confidence            47999999999999999999999999999986431  11   11 135899999999999999998888888773  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ++.+++|.++|+++....-....+.+.+.+..+.
T Consensus       220 l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~  253 (314)
T PRK06932        220 LALMKPTAFLINTGRGPLVDEQALLDALENGKIA  253 (314)
T ss_pred             HHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence            7889999999999999888888999999876554

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.11  E-value=4.6e-10  Score=96.05  Aligned_cols=105  Identities=14%  Similarity=0.074  Sum_probs=87.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+...|.+|.+|||.... .     ... ..++++++++||+|++++|-.+..+.++.  ...
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~--~~~  219 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLIG--ARE  219 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCcC--HHH
Confidence            37999999999999999999999999999986431 1     111 34899999999999999998888888773  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ++.+++|.++|+++....-....+.+.+.+.-+.
T Consensus       220 ~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~  253 (317)
T PRK06487        220 LALMKPGALLINTARGGLVDEQALADALRSGHLG  253 (317)
T ss_pred             HhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence            7889999999999998888888999999876554

>PLN02306 hydroxypyruvate reductase

Probab=99.09  E-value=9e-10  Score=96.37  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=88.9

Q ss_pred             CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchh-HHHH-HHCC------------CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSK-CDEL-VAHG------------ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~-~~~l-~~~g------------~~~~~s~~~~~~~advvi~~~p   65 (226)
                      ++|||||+|.+|+.+|+.+. ..|.+|..||+++.. .+.+ ...+            .....++++++++||+|++++|
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~P  245 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPV  245 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCC
Confidence            47999999999999999986 679999999998642 1211 1111            1234689999999999999999


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      -....+.++.  ...++.+++|.++|+++....-....+.+.+.+..+.
T Consensus       246 lt~~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~  292 (386)
T PLN02306        246 LDKTTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMF  292 (386)
T ss_pred             CChhhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCee
Confidence            8888888873  3567889999999999998888888899998776443

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.09  E-value=1.1e-09  Score=91.17  Aligned_cols=120  Identities=19%  Similarity=0.311  Sum_probs=89.6

Q ss_pred             HHHHHHhCC--CeEEEEcCCchhHHHHHHCCCcccC-CHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEE
Q 027255           15 ISMNLLRNG--FKVTVWNRTLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI   91 (226)
Q Consensus        15 ~A~~l~~~G--~~V~~~dr~~~~~~~l~~~g~~~~~-s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv   91 (226)
                      +|+.|.++|  ++|++||++++..+...+.|+.... +..++++++|+||+|+|- ..+..++   +.+.+.++++++|+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l---~~~~~~~~~~~iv~   76 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL---EEIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH---HHHHCGS-TTSEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH---HHhhhhcCCCcEEE
Confidence            588899998  7899999999998888888865432 226789999999999988 5677888   78888899999999


Q ss_pred             ecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCCh--------HhhccCcEEEEeccC
Q 027255           92 DMSTVDHETSIKISRAITSKGGHFLEA-PVSGSK--------QPAETGQLVILSAGE  139 (226)
Q Consensus        92 d~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~--------~~a~~g~~~~~~gg~  139 (226)
                      |.+++.-...+.+.+.+. .+..|+.+ |++|++        ..--+|...+++-++
T Consensus        77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~  132 (258)
T PF02153_consen   77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGE  132 (258)
T ss_dssp             E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECT
T ss_pred             EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCC
Confidence            999999888888777665 68888888 888882        222257777777554

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=99.07  E-value=4e-10  Score=94.36  Aligned_cols=112  Identities=23%  Similarity=0.256  Sum_probs=82.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCcccCCHHHH-hhhCCeEEEecCCHH--HHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEV-IKKCTITIGMLADPA--AALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~~~-~~~advvi~~~p~~~--~~~~v   73 (226)
                      +++.|+|+|.+|++++..|++.|++|+++||++++.+.+.+.    +.....+..+. ..++|+||.|+|..-  ...++
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~  197 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEP  197 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCC
Confidence            368999999999999999999999999999999988777653    32222333333 357999999998741  12111


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+    -...++++.+++|+++..+.+  .+.+.++++|+.++|+
T Consensus       198 ~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG  236 (270)
T TIGR00507       198 PV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG  236 (270)
T ss_pred             CC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence            10    123467899999999876655  5888889999998876

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.07  E-value=1.4e-09  Score=92.90  Aligned_cols=101  Identities=18%  Similarity=0.223  Sum_probs=71.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc--------------cCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~--------------~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||..+|..|.++||+|++|.|++.  +.+...|...              ..++ +....+|+||+|++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~   82 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKT   82 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecC
Confidence            7999999999999999999999999999999863  4455544321              1222 345678999999987


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHH
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAIT  109 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~  109 (226)
                       .++.+++   +.+.+.+.++.+|+.+...- ...+.+.+.+.
T Consensus        83 -~~~~~~~---~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~  120 (313)
T PRK06249         83 -TANALLA---PLIPQVAAPDAKVLLLQNGL-GVEEQLREILP  120 (313)
T ss_pred             -CChHhHH---HHHhhhcCCCCEEEEecCCC-CcHHHHHHHCC
Confidence             4566666   56667777777777765542 23344555543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.05  E-value=1.1e-09  Score=92.83  Aligned_cols=108  Identities=23%  Similarity=0.225  Sum_probs=82.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      +|++|||.|.+|..++..|...|.+|+++||++++.+.....|....  .++.+.+.++|+||.++|..-..++      
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~------  226 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE------  226 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH------
Confidence            47999999999999999999999999999999988777777787654  3567788899999999986322222      


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                       .++.++++.+|||+++....+.  + +.++++|+..+-+
T Consensus       227 -~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~~  262 (296)
T PRK08306        227 -VLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALLA  262 (296)
T ss_pred             -HHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEEE
Confidence             3466789999999987543322  1 3445667766543

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.04  E-value=1e-09  Score=92.47  Aligned_cols=73  Identities=23%  Similarity=0.338  Sum_probs=63.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEc-CCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWN-RTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ++|+||| .|.||.+||.+|.++|++|++|+ |++               +++++++++|+|++|++.+..++..+    
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~----  219 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW----  219 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe----
Confidence            4799999 99999999999999999999995 765               36888999999999999987665543    


Q ss_pred             ccccccCCCcEEEecCCCC
Q 027255           79 GVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~   97 (226)
                           +++|++|||++...
T Consensus       220 -----lk~GavVIDvGin~  233 (296)
T PRK14188        220 -----IKPGATVIDVGINR  233 (296)
T ss_pred             -----ecCCCEEEEcCCcc
Confidence                 67999999998754

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=99.03  E-value=2.4e-09  Score=90.05  Aligned_cols=119  Identities=13%  Similarity=0.172  Sum_probs=92.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-HCCCcccCCHHHHhh-hCCeEEEecCCHHHHHHHhhcccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      +|||||.|+||+-+|.-|.++||.|.+++|+.  .+.++ ..|....+.+.++++ ..|+|++|+. ...++.++   ..
T Consensus        54 ~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekil---at  127 (480)
T KOG2380|consen   54 VIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKIL---AT  127 (480)
T ss_pred             EEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHH---Hh
Confidence            69999999999999999999999999999976  44444 458777888888876 5899999994 46777777   33


Q ss_pred             ccc-ccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChHhh
Q 027255           80 VLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQPA  127 (226)
Q Consensus        80 l~~-~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~~a  127 (226)
                      +-. .++.|++++|..+...-....+.+.+.+ .+..+-+ |++|+...-
T Consensus       128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvn  176 (480)
T KOG2380|consen  128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVN  176 (480)
T ss_pred             cCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCC
Confidence            333 3789999999998876666667776654 6666655 888877433

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=99.03  E-value=1.7e-09  Score=92.01  Aligned_cols=108  Identities=19%  Similarity=0.165  Sum_probs=92.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||+|+|.+|+.+|++|...|..+.-+.|++...+...+.+.. ..+..+.+.++|+|++|+|.....+.++.  ..+
T Consensus       163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~  239 (336)
T KOG0069|consen  163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKF  239 (336)
T ss_pred             CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHH
Confidence            479999999999999999999884455567888777777776666 56789999999999999999999999884  357


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSK  111 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~  111 (226)
                      +..+++|.++|+++....-..+.+.+.+++.
T Consensus       240 ~~~mk~g~vlVN~aRG~iide~~l~eaL~sG  270 (336)
T KOG0069|consen  240 IEKMKDGAVLVNTARGAIIDEEALVEALKSG  270 (336)
T ss_pred             HHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence            8899999999999999888888888888763

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.00  E-value=1.5e-09  Score=91.70  Aligned_cols=96  Identities=17%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~   56 (226)
                      ++|+|||.|.||+.||..++..|++|+++|++++.+++..           +.|             ++...++. .+++
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~   82 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD   82 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence            5899999999999999999998899999999977655432           222             23344444 6789


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCC-CCHH
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST-VDHE   99 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~   99 (226)
                      ||+|+.++|.+..++.-+|  ..+-+..++++++-..|+ .++.
T Consensus        83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~it  124 (307)
T COG1250          83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSIT  124 (307)
T ss_pred             CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCHH
Confidence            9999999999888887776  446666767777654333 4443

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.92  E-value=1.1e-08  Score=87.23  Aligned_cols=105  Identities=15%  Similarity=0.243  Sum_probs=80.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc------------cCCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV------------GGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~------------~~s~~~~~~~advvi~~~p~~~   68 (226)
                      |||.|+|+|.||+-++..|.++|++|+++.|++. .+++++.|..+            .....+....+|+||+++-. -
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~   78 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-Y   78 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-c
Confidence            8999999999999999999999999999999876 88888876432            22233445579999999955 7


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK  111 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~  111 (226)
                      ++++++   ..+.+.+.+.+.|+-+-+.-.. .+.+.+...+.
T Consensus        79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~-~e~l~~~~~~~  117 (307)
T COG1893          79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGH-EEELRKILPKE  117 (307)
T ss_pred             cHHHHH---HHhhhcCCCCcEEEEEeCCCcH-HHHHHHhCCcc
Confidence            788888   7888889888877766554332 22566655554

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.91  E-value=6.9e-08  Score=82.29  Aligned_cols=92  Identities=18%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCccc-----------CCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG-----------GSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~-----------~s~~~~~~~advvi~~~p~~~   68 (226)
                      |||+|||+|.||.-+|..|.+.|++|++++|+.++++.+++. |+...           ....+.....|+||+|+-. .
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~-~   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKA-Y   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCH-H
Confidence            899999999999999999999999999999988888888754 43221           1111223468999999955 6


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      ++.+++   ..+.+.+.+++.||-+-+.
T Consensus        82 ~~~~al---~~l~~~l~~~t~vv~lQNG  106 (305)
T PRK05708         82 DAEPAV---ASLAHRLAPGAELLLLQNG  106 (305)
T ss_pred             hHHHHH---HHHHhhCCCCCEEEEEeCC
Confidence            677887   7788888888877766553

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.87  E-value=8.6e-09  Score=97.07  Aligned_cols=92  Identities=15%  Similarity=0.188  Sum_probs=72.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhhC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKKC   57 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~~~~~~a   57 (226)
                      +|+|||+|.||..||..++.+||+|++||++++.+++.           .+.|             ++++.+. +.+++|
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  393 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERV  393 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence            79999999999999999999999999999999876542           1122             4445666 456899


Q ss_pred             CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      |+||.++|.+-.++.-+|  .++.+.+++++++...|++
T Consensus       394 DlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSs  430 (715)
T PRK11730        394 DVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTST  430 (715)
T ss_pred             CEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCC
Confidence            999999999888887776  4576778788877654444

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.87  E-value=1.7e-08  Score=87.85  Aligned_cols=117  Identities=20%  Similarity=0.267  Sum_probs=93.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCC---C-------cccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG---A-------TVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g---~-------~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |+|.|||+|.+|+.+|..|+++| ++|++.||+++++.++....   +       .-...+.+++++.|+||.|.|....
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            68999999999999999999999 99999999999999987653   2       1233566788899999999988544


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEecCCCCChH
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEAPVSGSKQ  125 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~pv~g~~~  125 (226)
                      . .++      ..+++.|..++|+|-..+.. .++.+.+.+.|+. ++++.+.-|..
T Consensus        82 ~-~i~------ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~  130 (389)
T COG1748          82 L-TIL------KACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT  130 (389)
T ss_pred             H-HHH------HHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence            4 443      35667899999999887776 8888999998876 46666655543

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.85  E-value=8.7e-09  Score=86.15  Aligned_cols=74  Identities=22%  Similarity=0.220  Sum_probs=62.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+|||. |.||.+||.+|.++|+.|++|+..              +.++++.+++||+||++++.+..++..+     
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~-----  219 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF-----  219 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH-----
Confidence            47999999 999999999999999999999422              1268889999999999999987766543     


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                          +++|.++||++...
T Consensus       220 ----ik~GavVIDvgin~  233 (284)
T PRK14179        220 ----VKEGAVVIDVGMNR  233 (284)
T ss_pred             ----ccCCcEEEEeccee
Confidence                67999999998754

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.85  E-value=7.2e-09  Score=89.00  Aligned_cols=108  Identities=18%  Similarity=0.251  Sum_probs=77.9

Q ss_pred             eEEEEecChhHHHHHHHHHh--CCCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      ++||||+|.||...++.+..  ...+|++|||++++.+.+.+.    |  +..+.+++++++++|+|++|+|+.+   .+
T Consensus       130 ~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P~  206 (325)
T TIGR02371       130 VLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---PV  206 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---cE
Confidence            69999999999998777764  346899999999998877652    5  4568899999999999999998743   22


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +.     .+.+++|..|...++..|... ++...+-++.-.|+|.
T Consensus       207 ~~-----~~~l~~g~~v~~vGs~~p~~~-Eld~~~l~~a~v~vD~  245 (325)
T TIGR02371       207 VK-----ADWVSEGTHINAIGADAPGKQ-ELDPEILKNAKIFVDD  245 (325)
T ss_pred             ec-----HHHcCCCCEEEecCCCCcccc-cCCHHHHhcCcEEECC
Confidence            21     134689999988888776433 2332222223345664

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.84  E-value=1.3e-08  Score=95.89  Aligned_cols=93  Identities=16%  Similarity=0.175  Sum_probs=73.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~   56 (226)
                      .+|+|||+|.||..||..++.+|++|+++|++++.+++..           +.|             ++.+.+. +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            3799999999999999999999999999999998766422           112             3445555 45689


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      ||+||.++|.+-.++.-+|  .++-+.+++++++...|+.
T Consensus       393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~  430 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTST  430 (714)
T ss_pred             CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCC
Confidence            9999999999888887776  5577778788887665444

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.84  E-value=9.8e-09  Score=96.49  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=71.4

Q ss_pred             CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchhHHHHH-----------HC-------------CCcccCCHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AH-------------GATVGGSPAEVIK   55 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~~~~~   55 (226)
                      .+|+|||+|.||..||..++ .+|++|++||++++..++..           +.             .++.+++. +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            37999999999999999998 58999999999998655421           11             13455666 4678


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +||+||.++|.+-.++.-+|  .++-+.+++++++...|+.
T Consensus       384 ~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~  422 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSS  422 (699)
T ss_pred             cCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCC
Confidence            99999999999888887665  5566778788777654443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.83  E-value=8.9e-09  Score=96.91  Aligned_cols=93  Identities=16%  Similarity=0.202  Sum_probs=72.7

Q ss_pred             CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIK   55 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~   55 (226)
                      .+|+|||+|.||..||..++ .+|++|++||++++..++..           +.|             ++.+++. +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            37999999999999999999 88999999999988655421           112             3445565 5678


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +||+||.++|.+-.++.-+|  .++-+.+++++++...|+.
T Consensus       389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~  427 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSS  427 (708)
T ss_pred             cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCC
Confidence            99999999999888887766  5576778888888765544

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.82  E-value=3.4e-08  Score=82.54  Aligned_cols=121  Identities=17%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCc--hhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL--SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~--~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||+|||+|.||+.+++.+.+. +.++. ++++..  ++.......++..+.+++++..+.|+|+.|.|...+ .+..  
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~--   78 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHV--   78 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHH--
Confidence            6999999999999999999875 45543 444432  232222223667788888884568999999988544 3443  


Q ss_pred             ccccccccCCCcEEEecCCC---CHHHHHHHHHHHHhcCCc-EEecCCCCChHhhc
Q 027255           77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGH-FLEAPVSGSKQPAE  128 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~---~~~~~~~l~~~~~~~g~~-~ld~pv~g~~~~a~  128 (226)
                          ...+..|+.++..++.   .++..+++.+.+++.|.. |++....|+.....
T Consensus        79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~  130 (265)
T PRK13303         79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA  130 (265)
T ss_pred             ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence                2456678777776664   566678888888888865 56666666655433

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.82  E-value=5.3e-08  Score=82.08  Aligned_cols=133  Identities=17%  Similarity=0.120  Sum_probs=94.9

Q ss_pred             eEEEEecChhHHHHHHHHHhC--CC-----eEEEEcCCchhHH---HHH----HC--------------CCcccCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN--GF-----KVTVWNRTLSKCD---ELV----AH--------------GATVGGSPAEV   53 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~--G~-----~V~~~dr~~~~~~---~l~----~~--------------g~~~~~s~~~~   53 (226)
                      ||+|||.|+||+.+|+.+.++  .+     +|..|-+..+.-.   .+.    ..              ++.+++++.++
T Consensus        23 kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea  102 (372)
T KOG2711|consen   23 KVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEA  102 (372)
T ss_pred             EEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHH
Confidence            799999999999999999864  22     5777754333211   221    11              24568899999


Q ss_pred             hhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC----HH-HHHHHHHHHHhc---CCcEEecCCCCChH
Q 027255           54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD----HE-TSIKISRAITSK---GGHFLEAPVSGSKQ  125 (226)
Q Consensus        54 ~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~----~~-~~~~l~~~~~~~---g~~~ld~pv~g~~~  125 (226)
                      +.++|+++..+|. +.+..++   +++...++++...|+++..-    +. ..+-+++.+.+.   .+.+|.+|-...+.
T Consensus       103 ~~dADilvf~vPh-Qf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EV  178 (372)
T KOG2711|consen  103 AKDADILVFVVPH-QFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEV  178 (372)
T ss_pred             hccCCEEEEeCCh-hhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHH
Confidence            9999999999998 7899999   88999999999999998642    11 234455555544   45688888888877


Q ss_pred             hhccCcEEEEecc
Q 027255          126 PAETGQLVILSAG  138 (226)
Q Consensus       126 ~a~~g~~~~~~gg  138 (226)
                      ..+.-.-+...+-
T Consensus       179 a~~~f~e~tIg~~  191 (372)
T KOG2711|consen  179 ANEKFCETTIGYK  191 (372)
T ss_pred             HhccccceeEecc
Confidence            7666554444433

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.82  E-value=1.1e-08  Score=87.47  Aligned_cols=91  Identities=21%  Similarity=0.348  Sum_probs=67.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CCccc--CCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVG--GSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      ++|+|||+|.||..+++.|...| ++|+++||++++.+.+.+. |....  .+..+++.++|+||.|+|.+.. .+.+  
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~--  255 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV--  255 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH--
Confidence            58999999999999999999866 6899999999988777664 54332  3456777889999999998654 3322  


Q ss_pred             cccccccc-CCCcEEEecCC
Q 027255           77 KGGVLEQI-CPGKGYIDMST   95 (226)
Q Consensus        77 ~~~l~~~l-~~g~ivvd~st   95 (226)
                       ....+.. .++.++||.+.
T Consensus       256 -~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         256 -ERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             -HHHHhhCCCCCeEEEEeCC
Confidence             2121222 35789999984

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.81  E-value=2e-08  Score=81.52  Aligned_cols=105  Identities=17%  Similarity=0.225  Sum_probs=88.3

Q ss_pred             CeEEEEecChh--------------------HHHHHHHHHhCCCeEEEEcCCchh-----HHHHHHCCCcccCCHHHHhh
Q 027255            1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLSK-----CDELVAHGATVGGSPAEVIK   55 (226)
Q Consensus         1 m~IgvIG~G~m--------------------G~~~A~~l~~~G~~V~~~dr~~~~-----~~~l~~~g~~~~~s~~~~~~   55 (226)
                      |||.|.|+|+-                    |..||..++++||+|.+.++|.+-     .+++...|++++++..++++
T Consensus         2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~   81 (340)
T COG4007           2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE   81 (340)
T ss_pred             ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence            78999999874                    788999999999999999877553     45566779999999999999


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHH-HHHHHHHH
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHET-SIKISRAI  108 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~-~~~l~~~~  108 (226)
                      .+++.++.+|-..+.-.+.   +.++++++.|.+|.+++|++|-. ...+...+
T Consensus        82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~L  132 (340)
T COG4007          82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGEL  132 (340)
T ss_pred             cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhh
Confidence            9999999999987887887   78899999999999999987753 34444444

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.81  E-value=8.6e-08  Score=76.60  Aligned_cols=106  Identities=25%  Similarity=0.358  Sum_probs=79.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |+||+||+|.+|..+.+.+...  .++ +.+|||+.+++.++.+. +...++++++.++..|+++.|. +++++++..  
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~--   77 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV--   77 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence            7999999999999999887643  355 78999999999887664 5666688999999999999998 557888776  


Q ss_pred             ccccccccCCCcEEEecCC---CCHHHHHHHHHHHHhcCC
Q 027255           77 KGGVLEQICPGKGYIDMST---VDHETSIKISRAITSKGG  113 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st---~~~~~~~~l~~~~~~~g~  113 (226)
                       .   +.|+.|.-+|-+|+   ..|...+++.+.++..+.
T Consensus        78 -~---~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~  113 (255)
T COG1712          78 -P---KILKAGIDVIVMSVGALADEGLRERLRELAKCGGA  113 (255)
T ss_pred             -H---HHHhcCCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence             3   44556655555554   356666666666555443

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.79  E-value=1.8e-08  Score=95.13  Aligned_cols=91  Identities=18%  Similarity=0.145  Sum_probs=72.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhhC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKKC   57 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~a   57 (226)
                      +|+|||+|.||..||..++.+|++|++||++++.+++..           +.|             ++.+.+.+ .+++|
T Consensus       337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a  415 (737)
T TIGR02441       337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNA  415 (737)
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence            799999999999999999999999999999998866522           112             44456664 56899


Q ss_pred             CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      |+||.++|.+-.++.-+|  .++-+.+++++++...|+
T Consensus       416 DlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTS  451 (737)
T TIGR02441       416 DMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTS  451 (737)
T ss_pred             CeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCC
Confidence            999999999888887776  457777888887765443

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.78  E-value=1.7e-08  Score=76.96  Aligned_cols=100  Identities=14%  Similarity=0.238  Sum_probs=73.9

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC--------------CHHHHhhhCCeEEEecCCHH
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------------SPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--------------s~~~~~~~advvi~~~p~~~   68 (226)
                      |.|+|+|.||.-+|..|.+.|++|.++.|++ +.+.+.+.|++...              +..+..+.+|+||+|+.. .
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c
Confidence            7899999999999999999999999999998 88888877653321              122456779999999966 6


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHH
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAI  108 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~  108 (226)
                      ++++++   +.+.+.+.+++.|+.+-+.- ...+.+.+.+
T Consensus        79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~-g~~~~l~~~~  114 (151)
T PF02558_consen   79 QLEQAL---QSLKPYLDPNTTIVSLQNGM-GNEEVLAEYF  114 (151)
T ss_dssp             GHHHHH---HHHCTGEETTEEEEEESSSS-SHHHHHHCHS
T ss_pred             chHHHH---HHHhhccCCCcEEEEEeCCC-CcHHHHHHHc
Confidence            777888   77888888886666655542 2224444444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.77  E-value=8.4e-09  Score=77.50  Aligned_cols=69  Identities=23%  Similarity=0.250  Sum_probs=56.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHCC------CcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHG------ATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~g------~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      .++.|||+|.||+.++..|...|.+ |+++||+.++++.+.+.-      .....+..+...++|+||.|+|.+..
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            3789999999999999999999986 999999999999887642      22345666778899999999987643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.77  E-value=1.1e-07  Score=78.54  Aligned_cols=117  Identities=13%  Similarity=0.168  Sum_probs=87.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC---Ce-EEEEcCCchhHHHHHHCCCcccCCHHHH-hhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG---FK-VTVWNRTLSKCDELVAHGATVGGSPAEV-IKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G---~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~-~~~advvi~~~p~~~~~~~v~~   75 (226)
                      +|||+||+|.||+.+++.|.+.+   ++ +.+++|++++.+.+... ..++.+++++ ...+|+|+.|-+. +++++.. 
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~-~av~e~~-   79 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQ-QAIAEHA-   79 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCH-HHHHHHH-
Confidence            58999999999999999987643   55 55789998888888765 7788999996 6789999999954 7777776 


Q ss_pred             cccccccccCCCcEEEecCC---CCHHHHHHHHHHHHhcCCc-EEecCCCCChH
Q 027255           76 DKGGVLEQICPGKGYIDMST---VDHETSIKISRAITSKGGH-FLEAPVSGSKQ  125 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st---~~~~~~~~l~~~~~~~g~~-~ld~pv~g~~~  125 (226)
                        .   +.|..|.-++-+|.   .++...+++.+.+++.|.+ |+-+.-.||-.
T Consensus        80 --~---~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD  128 (267)
T PRK13301         80 --E---GCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD  128 (267)
T ss_pred             --H---HHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence              3   44556776666665   3677888888888776643 55554444433

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.76  E-value=4.6e-08  Score=72.43  Aligned_cols=110  Identities=27%  Similarity=0.380  Sum_probs=72.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-CCCeE-EEEcCCch-h----HHHHH---HCCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLR-NGFKV-TVWNRTLS-K----CDELV---AHGATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~-~G~~V-~~~dr~~~-~----~~~l~---~~g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |||+++|+ |.||+.+++.+.+ .++++ .+++|+++ .    ...+.   ..++.+..+++++.+.+|+||-++ .++.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~   79 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA   79 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence            79999999 9999999999998 68884 46788872 1    11221   347788899999999999999988 6666


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCH-HHHHHHHHHHHhcCCcEEecC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~-~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +.+.+   +   ..++.+..+|-.+|... +..+.+.+ +.++ +..+-+|
T Consensus        80 ~~~~~---~---~~~~~g~~~ViGTTG~~~~~~~~l~~-~a~~-~~vl~a~  122 (124)
T PF01113_consen   80 VYDNL---E---YALKHGVPLVIGTTGFSDEQIDELEE-LAKK-IPVLIAP  122 (124)
T ss_dssp             HHHHH---H---HHHHHT-EEEEE-SSSHHHHHHHHHH-HTTT-SEEEE-S
T ss_pred             hHHHH---H---HHHhCCCCEEEECCCCCHHHHHHHHH-Hhcc-CCEEEeC
Confidence            66665   3   23445778888888764 44455544 3333 5555444

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.76  E-value=7e-08  Score=85.88  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=72.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|+|||+|.+|+.+|+.+...|.+|+++++++.+.......|+.. .+.+++++.+|+|++++.+...+.      ...
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~------~e~  327 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIIT------LEH  327 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccC------HHH
Confidence            4799999999999999999999999999999988765555567654 468899999999999975433222      124


Q ss_pred             ccccCCCcEEEecCCCCH
Q 027255           81 LEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~   98 (226)
                      ++.+++|.++++.+....
T Consensus       328 ~~~MKpGAiLINvGr~d~  345 (476)
T PTZ00075        328 MRRMKNNAIVGNIGHFDN  345 (476)
T ss_pred             HhccCCCcEEEEcCCCch
Confidence            477899999999988753

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.75  E-value=8.2e-08  Score=79.86  Aligned_cols=112  Identities=18%  Similarity=0.170  Sum_probs=78.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      |||+|||+ |.||+.+++.+.+. ++++. ++|+++++.......++....+++++++.+|+|+.++|... ..+++   
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~-~~~~~---   77 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEA-TLENL---   77 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHH-HHHHH---
Confidence            69999998 99999999998864 67755 58998876655433466677899998888999998886644 34443   


Q ss_pred             cccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           78 GGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                         ...++.|..+|..+| .+++..+++.+ +. +++..+=+|-+
T Consensus        78 ---~~al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~  117 (257)
T PRK00048         78 ---EFALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNF  117 (257)
T ss_pred             ---HHHHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcc
Confidence               244556766655554 47777777777 33 55555555543

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.74  E-value=1.3e-07  Score=83.20  Aligned_cols=101  Identities=20%  Similarity=0.129  Sum_probs=78.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      .+|+|+|+|.+|+.+|+.+...|.+|+++++++.+.......|..+. +.+++++++|+||.++.+...+..-      .
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~------~  268 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGE------H  268 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHH------H
Confidence            37999999999999999999999999999999988766666677544 5688899999999988765544432      3


Q ss_pred             ccccCCCcEEEecCCCCH-HHHHHHHHHH
Q 027255           81 LEQICPGKGYIDMSTVDH-ETSIKISRAI  108 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~-~~~~~l~~~~  108 (226)
                      +..+++|.++++.+.... -....+.+.+
T Consensus       269 ~~~mK~GailiN~G~~~~eId~~aL~~~~  297 (406)
T TIGR00936       269 FENMKDGAIVANIGHFDVEIDVKALEELA  297 (406)
T ss_pred             HhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence            467889999999987654 3444454444

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.73  E-value=1.6e-07  Score=80.05  Aligned_cols=109  Identities=8%  Similarity=0.119  Sum_probs=78.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCc-hhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL-SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~-~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      +||+|||+|+||+.+++.+.++ ++++. +|+|++ ++..  ...++....+..++..+.|+|++|+|+..+.+.+.   
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~---   78 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA---   78 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH---
Confidence            4899999999999999999875 68866 579986 4332  12344455677777788999999999877766554   


Q ss_pred             cccccccCCCcEEEecCCC---CHHHHHHHHHHHHhc-CCcEEec
Q 027255           78 GGVLEQICPGKGYIDMSTV---DHETSIKISRAITSK-GGHFLEA  118 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~---~~~~~~~l~~~~~~~-g~~~ld~  118 (226)
                          +.+..|.-+|++...   .|+..+++.+.+++. ++.++.+
T Consensus        79 ----~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~  119 (324)
T TIGR01921        79 ----PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIST  119 (324)
T ss_pred             ----HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence                556788888887643   356677777766653 4444453

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.71  E-value=2.1e-07  Score=80.09  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=87.0

Q ss_pred             CeEEEEecChh-HHHHHHHHHhCCC--e-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhhh--CCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIM-GKAISMNLLRNGF--K-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~m-G~~~A~~l~~~G~--~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~~--advvi~~~p~~~~~~~   72 (226)
                      +||||||+|.+ +...+..+.+.+.  + |.++|+++++++.+.+. |+ ..+++.++++++  .|+|++++|+..+.+.
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~   83 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAEL   83 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHH
Confidence            58999999955 4668888888763  4 66789999999888775 66 478899999986  5899999999888877


Q ss_pred             HhhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      ++       ..+..|+.|+.--  +.++++.++|.+..+++|..+.-+-
T Consensus        84 ~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~  125 (342)
T COG0673          84 AL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGF  125 (342)
T ss_pred             HH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeeh
Confidence            65       5566777665544  3578899999999999877655443

>PLN02494 adenosylhomocysteinase

Probab=98.71  E-value=1.2e-07  Score=84.17  Aligned_cols=98  Identities=11%  Similarity=0.116  Sum_probs=75.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHH-HHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA-LSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~-~~v~~~~~~   79 (226)
                      .+|+|+|+|.+|+.+|+.+...|.+|+++++++.+.......|..+. +.+++++.+|+|+++..+...+ .+.      
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~------  327 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDH------  327 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHH------
Confidence            36999999999999999999999999999999987666666677654 6788999999999877654332 333      


Q ss_pred             cccccCCCcEEEecCCC-CHHHHHHHHH
Q 027255           80 VLEQICPGKGYIDMSTV-DHETSIKISR  106 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~-~~~~~~~l~~  106 (226)
                       ++.++++.++++.+.. ..-....+.+
T Consensus       328 -L~~MK~GAiLiNvGr~~~eID~~aL~~  354 (477)
T PLN02494        328 -MRKMKNNAIVCNIGHFDNEIDMLGLET  354 (477)
T ss_pred             -HhcCCCCCEEEEcCCCCCccCHHHHhh
Confidence             3678899999999884 3334444443

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.70  E-value=9.7e-08  Score=76.12  Aligned_cols=80  Identities=24%  Similarity=0.332  Sum_probs=62.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |||+|||. |.||+.+++.|.++||.|+                          +.+||+||+|+|- ....+++   +.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv-~~~~~~i---~~   50 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPI-DAALNYI---ES   50 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCH-HHHHHHH---HH
Confidence            89999998 9999999999999999986                          2589999999998 4566666   33


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCCh
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSK  124 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~  124 (226)
                      +.      .+++|.+++.-...        +....|+.. |++|..
T Consensus        51 ~~------~~v~Dv~SvK~~i~--------~~~~~~vg~HPMfGp~   82 (197)
T PRK06444         51 YD------NNFVEISSVKWPFK--------KYSGKIVSIHPLFGPM   82 (197)
T ss_pred             hC------CeEEeccccCHHHH--------HhcCCEEecCCCCCCC
Confidence            32      37899998876422        124578877 899843

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=98.68  E-value=8e-08  Score=86.60  Aligned_cols=103  Identities=21%  Similarity=0.318  Sum_probs=75.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCccc--CCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      ++++|+|+|.+|++++..|.+.|++|+++||++++.+.+.+. +....  .+..+ +.++|+||.|+|.+..+...    
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~~----  407 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPKA----  407 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCcchhH----
Confidence            478999999999999999999999999999999988887654 22211  22222 46799999999986432211    


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                            +.  .+++|+....+.+.  +.+.++++|+..+++
T Consensus       408 ------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~G  438 (477)
T PRK09310        408 ------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIYG  438 (477)
T ss_pred             ------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEECc
Confidence                  11  38999988765544  667888888887665

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=98.68  E-value=7.6e-08  Score=82.29  Aligned_cols=110  Identities=13%  Similarity=0.166  Sum_probs=87.1

Q ss_pred             eEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHC----C---CcccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH----G---ATVGGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~----g---~~~~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      .++|||+|.++....+.+..-  --+|.+|+|+++..+++...    +   +..+.|.++++++||+|++|+|+.+   .
T Consensus       132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---P  208 (330)
T COG2423         132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---P  208 (330)
T ss_pred             EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---C
Confidence            589999999999999998863  34799999999999887643    3   5688999999999999999999855   4


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      ++.     .+.+++|..|..+++-.|...+--.+.+.+.+..|+|.+
T Consensus       209 il~-----~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~  250 (330)
T COG2423         209 VLK-----AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL  250 (330)
T ss_pred             eec-----HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence            441     245779999998888777666555566666668888875

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.68  E-value=1.8e-07  Score=82.63  Aligned_cols=91  Identities=18%  Similarity=0.121  Sum_probs=73.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      .+|+|+|+|.+|+.+|+.+...|.+|+++|+++.+.......|..+ .+.+++++.+|+||.++.+...+..      ..
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~------~~  285 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITA------EH  285 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHH------HH
Confidence            3699999999999999999999999999999998876666667664 4688999999999999866443432      23


Q ss_pred             ccccCCCcEEEecCCCCH
Q 027255           81 LEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~   98 (226)
                      +..+++|.++++.+....
T Consensus       286 ~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        286 MEAMKDGAILANIGHFDN  303 (425)
T ss_pred             HhcCCCCCEEEEcCCCCC
Confidence            467889999999987543

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=98.68  E-value=2.1e-07  Score=77.78  Aligned_cols=114  Identities=19%  Similarity=0.226  Sum_probs=78.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHh-CCCeEE-EEcCC-chhH----HHHHH---CCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLR-NGFKVT-VWNRT-LSKC----DELVA---HGATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~-~~~~----~~l~~---~g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |||+|+| +|.||+.+++.+.. .++++. ++||. +++.    ..+..   .|+.++++++++...+|+|+.++|.. .
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~-~   80 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPE-G   80 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChH-H
Confidence            6999999 69999999999986 577755 57854 3221    12211   35667788888855689999999764 4


Q ss_pred             HHHHhhcccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                      ..+.+      ...+..|..+|..+| .+++..+++.+.+++.|+.++-+|-+
T Consensus        81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf  127 (266)
T TIGR00036        81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF  127 (266)
T ss_pred             HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence            44444      245566766655444 67888888888887777776665543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.68  E-value=1e-07  Score=73.11  Aligned_cols=91  Identities=20%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      +++.|+|.|..|+.+|+.|...|.+|++++++|-++-+....|.++. +.++++..+|++|+++-....+..      +.
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~------e~   96 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITG------EH   96 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-H------HH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCH------HH
Confidence            36889999999999999999999999999999988777777788765 689999999999998865332221      12


Q ss_pred             ccccCCCcEEEecCCCCH
Q 027255           81 LEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~   98 (226)
                      ++.++.|.++.+.+...-
T Consensus        97 ~~~mkdgail~n~Gh~d~  114 (162)
T PF00670_consen   97 FRQMKDGAILANAGHFDV  114 (162)
T ss_dssp             HHHS-TTEEEEESSSSTT
T ss_pred             HHHhcCCeEEeccCcCce
Confidence            366889999999887543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.68  E-value=1.2e-07  Score=80.85  Aligned_cols=108  Identities=14%  Similarity=0.187  Sum_probs=79.1

Q ss_pred             CeEEEEecChhHHHHHHHHHh-CC-CeEEEEcCCchhHHHHHHC----CCcc-cCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----GATV-GGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~-~G-~~V~~~dr~~~~~~~l~~~----g~~~-~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      .+|+|||+|.+|..+++.+.. .+ .+|.+|+|++++.+.+.+.    +... +.+.+++++++|+|++|+|...   .+
T Consensus       126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl  202 (304)
T PRK07340        126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PV  202 (304)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ce
Confidence            379999999999999999975 45 4699999999998887654    3333 4788899999999999998864   33


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +   .   ..+++|+.|...++..|...+--.+.+... -.|+|.
T Consensus       203 ~---~---~~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~  240 (304)
T PRK07340        203 Y---P---EAARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD  240 (304)
T ss_pred             e---C---ccCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence            3   2   235799999998887775433222333333 346776

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=98.67  E-value=5.8e-08  Score=82.51  Aligned_cols=109  Identities=6%  Similarity=0.049  Sum_probs=80.4

Q ss_pred             eEEEEecChhHHHHHHHHHhC-C-CeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G-~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      +++|||+|..|...++.+..- . .+|++|+|++++.+.|.+.     |  +.++.++++++.+||+|++++|..+   .
T Consensus       119 ~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~---P  195 (301)
T PRK06407        119 NFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT---P  195 (301)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---c
Confidence            689999999999999888863 2 4699999999998887543     4  4567899999999999999998743   3


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ++.     .+.+++|..|.-..+..|...+--.+.+.+....|+|.
T Consensus       196 ~~~-----~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~  236 (301)
T PRK06407        196 IFN-----RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH  236 (301)
T ss_pred             Eec-----HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence            331     13467888888888777754433334444444567775

>PRK06823 ornithine cyclodeaminase; Validated

Probab=98.65  E-value=9e-08  Score=81.81  Aligned_cols=109  Identities=17%  Similarity=0.228  Sum_probs=79.6

Q ss_pred             eEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHC----CC--cccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH----GA--TVGGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~----g~--~~~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      +++|||+|..+...++.+..-  -.+|++|+|++++.+.+.+.    +.  .++++.+++++++|+|++|++..+   .+
T Consensus       130 ~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P~  206 (315)
T PRK06823        130 AIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---PL  206 (315)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---ce
Confidence            689999999999999988753  24799999999998876642    43  447899999999999999998643   33


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +.     .+.+++|..|+..++..|...+--.+.+.+....|+|-
T Consensus       207 ~~-----~~~l~~G~hi~~iGs~~p~~~Eld~~~l~~a~~vvvD~  246 (315)
T PRK06823        207 LQ-----AEDIQPGTHITAVGADSPGKQELDAELVARADKILVDS  246 (315)
T ss_pred             eC-----HHHcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence            31     13567999999888877754333333444434456775

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.65  E-value=1.3e-07  Score=78.66  Aligned_cols=88  Identities=22%  Similarity=0.244  Sum_probs=71.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+|||.|+-|.+.|.||..+|.+|++--|..+. .+...+.|..+ .+.+|+++.+|+|++.+|+ ..-.+++.  +.
T Consensus        19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PD-e~q~~vy~--~~   94 (338)
T COG0059          19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPD-EQQKEVYE--KE   94 (338)
T ss_pred             CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCch-hhHHHHHH--HH
Confidence            47999999999999999999999998887776555 56666678775 5799999999999999998 55666762  36


Q ss_pred             cccccCCCcEEEe
Q 027255           80 VLEQICPGKGYID   92 (226)
Q Consensus        80 l~~~l~~g~ivvd   92 (226)
                      +.+.|+.|+.+.-
T Consensus        95 I~p~Lk~G~aL~F  107 (338)
T COG0059          95 IAPNLKEGAALGF  107 (338)
T ss_pred             hhhhhcCCceEEe
Confidence            8888888886543

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.64  E-value=6.9e-08  Score=84.95  Aligned_cols=87  Identities=20%  Similarity=0.276  Sum_probs=69.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCC------chhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT------LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~------~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      ++|+|||+|..|++.|.+|...|++|++--|.      .+..+.+.+.|..+ .++.|+++.||+|++.+|+. .-..+.
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~  114 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVV  114 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHH
Confidence            57999999999999999999999999854443      34555566678765 67999999999999999996 444454


Q ss_pred             hcccccccccCCCcEEEe
Q 027255           75 FDKGGVLEQICPGKGYID   92 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd   92 (226)
                         +.+.+.+++|..+.-
T Consensus       115 ---~~i~p~LK~Ga~L~f  129 (487)
T PRK05225        115 ---RAVQPLMKQGAALGY  129 (487)
T ss_pred             ---HHHHhhCCCCCEEEe
Confidence               678899998887654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.61  E-value=1.9e-07  Score=80.35  Aligned_cols=108  Identities=19%  Similarity=0.220  Sum_probs=79.4

Q ss_pred             eEEEEecChhHHHHHHHHHh-CC-CeEEEEcCCchhHHHHHHC-----CC--cccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~-~G-~~V~~~dr~~~~~~~l~~~-----g~--~~~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      +++|||+|.+|..++..++. .+ .+|.+|||++++.+++.+.     ++  ..+.+.++++.++|+|++|+|...   .
T Consensus       129 ~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~---p  205 (325)
T PRK08618        129 TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT---P  205 (325)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC---c
Confidence            69999999999999988764 34 4699999999999887652     43  356788999999999999998753   3


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ++   .   ..+++|+.|+...+..|...+--.+.+.+....|+|.
T Consensus       206 ~i---~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~  245 (325)
T PRK08618        206 VF---S---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES  245 (325)
T ss_pred             ch---H---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence            33   1   4568999999888877754433233444434456676

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=98.61  E-value=8.2e-07  Score=76.67  Aligned_cols=108  Identities=11%  Similarity=0.142  Sum_probs=83.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCC----HHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLAD----PAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~----~~~~~~   72 (226)
                      .||+|||+ .||...+..+.+.  ++++. ++|+++++++++.+. |+..+++.++++++.|++++++|+    ..+.+.
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~   82 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL   82 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence            48999999 6899999999875  46754 689999999988775 888889999999888999998864    244443


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      +.       ..++.|+.|+.--....++.+++.+.++++|+.+.
T Consensus        83 a~-------~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        83 AR-------ALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             HH-------HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            33       45667777666655567888999988888876543

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.60  E-value=1.4e-07  Score=69.51  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=59.9

Q ss_pred             eEEEEec-ChhHHHHHHHHHhC-CCeEEEE-cCCchhHHHHHHCC--Cc-c---cCCHHHH-hhhCCeEEEecCCHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRN-GFKVTVW-NRTLSKCDELVAHG--AT-V---GGSPAEV-IKKCTITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~-dr~~~~~~~l~~~g--~~-~---~~s~~~~-~~~advvi~~~p~~~~~~   71 (226)
                      ||+|||. |.+|..++..|... ++++... +++.++.+.+...+  +. .   ..+..+. ..++|+||+|+|++.+.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            6899995 99999999999984 7887655 66554433333322  11 0   1111112 247999999999965554


Q ss_pred             HHhhcccccccccCCCcEEEecCCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .+    ..+...+.+|+++||+|+.
T Consensus        81 ~~----~~~~~~~~~g~~viD~s~~  101 (122)
T smart00859       81 IA----PLLPKAAEAGVKVIDLSSA  101 (122)
T ss_pred             HH----HHHHhhhcCCCEEEECCcc
Confidence            33    2334556799999999985

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PLN00203 glutamyl-tRNA reductase

Probab=98.60  E-value=1.2e-07  Score=85.94  Aligned_cols=68  Identities=19%  Similarity=0.242  Sum_probs=56.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--CCc----ccCCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--GAT----VGGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--g~~----~~~s~~~~~~~advvi~~~p~~~   68 (226)
                      .+|+|||+|.||..++++|...|+ +|+++||++++.+.+.+.  +..    ...+..+++.++|+||+|+|.+.
T Consensus       267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence            379999999999999999999996 699999999999988764  322    23566778899999999986543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.57  E-value=5.7e-07  Score=79.32  Aligned_cols=88  Identities=18%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL   81 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~   81 (226)
                      +|+|+|+|.+|..+++.+...|.+|+++|+++.+.+.....|+... +.+++++.+|+||.|+.+...+..-      .+
T Consensus       204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~------~l  276 (413)
T cd00401         204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGE------HF  276 (413)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHH------HH
Confidence            7999999999999999999999999999999999888888888554 4578888999999998765544433      24


Q ss_pred             cccCCCcEEEecCCC
Q 027255           82 EQICPGKGYIDMSTV   96 (226)
Q Consensus        82 ~~l~~g~ivvd~st~   96 (226)
                      ..+++|.++++.+..
T Consensus       277 ~~mk~GgilvnvG~~  291 (413)
T cd00401         277 EQMKDGAIVCNIGHF  291 (413)
T ss_pred             hcCCCCcEEEEeCCC
Confidence            678899999998854

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK11579 putative oxidoreductase; Provisional

Probab=98.57  E-value=1.2e-06  Score=76.01  Aligned_cols=109  Identities=17%  Similarity=0.205  Sum_probs=79.7

Q ss_pred             CeEEEEecChhHHH-HHHHHHh-CCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~   74 (226)
                      +||||||+|.||.. .+..+.+ .++++. ++|+++++...  .. +...+.+++++++  +.|+|++|+|+..+.+.++
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~   82 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA--DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK   82 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh--hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence            48999999999984 5666655 367765 78999876542  22 5567889999986  4799999999988777665


Q ss_pred             hcccccccccCCCcEEE-ecC-CCCHHHHHHHHHHHHhcCCcEEec
Q 027255           75 FDKGGVLEQICPGKGYI-DMS-TVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivv-d~s-t~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                             ..++.|+.|+ +-- +.+.+..++|.+.++++|+.+.-+
T Consensus        83 -------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~  121 (346)
T PRK11579         83 -------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVF  121 (346)
T ss_pred             -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence                   4456676554 432 357788899999888888765433

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.57  E-value=6.5e-07  Score=86.65  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=83.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCC-Ce-------------EEEEcCCchhHHHHHHC--C---Ccc-cCCHHHHh---hhCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG-FK-------------VTVWNRTLSKCDELVAH--G---ATV-GGSPAEVI---KKCT   58 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G-~~-------------V~~~dr~~~~~~~l~~~--g---~~~-~~s~~~~~---~~ad   58 (226)
                      +|+|||+|.||+..++.|++.. ++             |.+.|+++++++++.+.  +   +.. +.+.+++.   +++|
T Consensus       571 rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~D  650 (1042)
T PLN02819        571 NVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVD  650 (1042)
T ss_pred             cEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCC
Confidence            7999999999999999998753 33             88999999998887663  4   233 45656554   5799


Q ss_pred             eEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        59 vvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +|++|+|..-+..-+       ..+++.|+.+++.+ ......+++.+.++++|+.++-.
T Consensus       651 aVIsalP~~~H~~VA-------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e  702 (1042)
T PLN02819        651 VVISLLPASCHAVVA-------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCE  702 (1042)
T ss_pred             EEEECCCchhhHHHH-------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEEC
Confidence            999999996554333       25667888888887 55667788999999999876443

>PRK06046 alanine dehydrogenase; Validated

Probab=98.56  E-value=1.9e-07  Score=80.38  Aligned_cols=108  Identities=21%  Similarity=0.262  Sum_probs=77.7

Q ss_pred             eEEEEecChhHHHHHHHHHhC-C-CeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G-~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      +|+|||+|.+|...++.+... + ..|.+|||++++.+++.+.     +  +..+.+.+++++ +|+|++|+|+..   .
T Consensus       131 ~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~---P  206 (326)
T PRK06046        131 VVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK---P  206 (326)
T ss_pred             EEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---c
Confidence            699999999999999999853 4 3688999999998887653     4  345778999987 999999999843   3


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      ++.     .+.+++|+.|...++..|...+ +...+-.+.-.|+|..
T Consensus       207 ~~~-----~~~l~~g~hV~~iGs~~p~~~E-l~~~~~~~a~vvvD~~  247 (326)
T PRK06046        207 VVK-----AEWIKEGTHINAIGADAPGKQE-LDPEILLRAKVVVDDM  247 (326)
T ss_pred             Eec-----HHHcCCCCEEEecCCCCCcccc-CCHHHHhCCcEEECCH
Confidence            331     1346799999888887774333 3333323334577763

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.55  E-value=2e-07  Score=80.14  Aligned_cols=89  Identities=17%  Similarity=0.327  Sum_probs=68.3

Q ss_pred             eEEEEecChhHHHHHHHHHh-CCC-eEEEEcCCchhHHHHHHC-----CCc--ccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR-NGF-KVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~-~G~-~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      +++|||+|.++...+..|.. .+. +|++|+|++++.+.+.+.     |+.  .+.+++++++++|+|+.|+|..+   .
T Consensus       131 ~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~---p  207 (326)
T TIGR02992       131 VVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET---P  207 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---c
Confidence            69999999999999999974 564 699999999999887653     443  36788999999999999998743   2


Q ss_pred             HhhcccccccccCCCcEEEecCCCCH
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~   98 (226)
                      ++.     .+.+++|..+...+...|
T Consensus       208 ~i~-----~~~l~~g~~i~~vg~~~p  228 (326)
T TIGR02992       208 ILH-----AEWLEPGQHVTAMGSDAE  228 (326)
T ss_pred             Eec-----HHHcCCCcEEEeeCCCCC
Confidence            231     134678888877665433

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.52  E-value=2.9e-07  Score=79.30  Aligned_cols=88  Identities=19%  Similarity=0.274  Sum_probs=66.2

Q ss_pred             CeEEEEecChhHHHHHHHHHh-CC-CeEEEEcCCchhHHHHHHC-----CCc--ccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~-~G-~~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      ++|+|||+|.+|..++..+.. .+ .+|++|+|++++.+.+.+.     |+.  ...++++++.++|+|++++|...   
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~---  209 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE---  209 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---
Confidence            479999999999999998875 44 5799999999999988662     443  46788999999999999998743   


Q ss_pred             HHhhcccccccccCCCcEEEecCCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .++   .  ...+++|..+....+.
T Consensus       210 p~i---~--~~~l~~g~~v~~vg~d  229 (330)
T PRK08291        210 PIL---K--AEWLHPGLHVTAMGSD  229 (330)
T ss_pred             cEe---c--HHHcCCCceEEeeCCC
Confidence            222   1  1235677777665543

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.52  E-value=2.9e-07  Score=77.49  Aligned_cols=113  Identities=20%  Similarity=0.245  Sum_probs=78.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-C----CcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-G----ATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g----~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++.|+|+|.+|++++..|...| .+|++++|+.++.+.+.+. +    +....+..+.+.++|+||.++|.+-.- +.- 
T Consensus       125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~-~~~-  202 (278)
T PRK00258        125 RILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG-ELP-  202 (278)
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC-CCC-
Confidence            6899999999999999999999 7899999999998887654 1    111113346667899999999874321 000 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ...-....++++.+++|+.- .|..+ .+.+.++++|+..+++
T Consensus       203 ~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~~G  243 (278)
T PRK00258        203 LPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTIDG  243 (278)
T ss_pred             CCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeecCC
Confidence            00001234678899999976 34332 4566677788876654

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.51  E-value=3.6e-07  Score=77.09  Aligned_cols=111  Identities=22%  Similarity=0.238  Sum_probs=77.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-----C-Ccc--cCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G-ATV--GGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-----g-~~~--~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      +|.|||+|.+|++++..|...|. +|+++||+.++++.+.+.     . ...  ..+..+.++++|+||.|+|..-.-..
T Consensus       129 ~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~  208 (284)
T PRK12549        129 RVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHP  208 (284)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCC
Confidence            68999999999999999999997 799999999999888653     1 111  23445567789999999986421000


Q ss_pred             Hhhccccc-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           73 VVFDKGGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        73 v~~~~~~l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      -    ..+ ...+.++.+++|+.-.... + .+.+.++++|+..+|+
T Consensus       209 ~----~~~~~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~G  249 (284)
T PRK12549        209 G----LPLPAELLRPGLWVADIVYFPLE-T-ELLRAARALGCRTLDG  249 (284)
T ss_pred             C----CCCCHHHcCCCcEEEEeeeCCCC-C-HHHHHHHHCCCeEecC
Confidence            0    001 1236678899998764332 2 4566677788877665

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.51  E-value=9.4e-07  Score=75.30  Aligned_cols=65  Identities=11%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHH----HC--------CCcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----AH--------GATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~----~~--------g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||..+|..++.+|+ +|.++|++++..+...    +.        .++.+.+.++ +++||+||++++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence            799999999999999999999887 8999999776543211    11        1333566666 6899999999873

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.49  E-value=7.4e-08  Score=77.02  Aligned_cols=89  Identities=11%  Similarity=0.148  Sum_probs=67.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----------C------------------CcccCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----------G------------------ATVGGSPAE   52 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----------g------------------~~~~~s~~~   52 (226)
                      +|+|||.|.||+.||+--+..|++|+++|++++.+.+..+.           +                  +..+++..+
T Consensus        13 ~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~   92 (298)
T KOG2304|consen   13 NVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSD   92 (298)
T ss_pred             ceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHH
Confidence            59999999999999999999999999999999876654321           1                  345677888


Q ss_pred             HhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEe
Q 027255           53 VIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYID   92 (226)
Q Consensus        53 ~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd   92 (226)
                      +++++|+||.++-....++.-+|  ..+-...++.+++..
T Consensus        93 ~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~t  130 (298)
T KOG2304|consen   93 AVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILAT  130 (298)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEee
Confidence            88889999988766666665555  344455555555543

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=98.49  E-value=9.6e-07  Score=74.00  Aligned_cols=136  Identities=15%  Similarity=0.181  Sum_probs=96.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHC-------------------CCcccCCHHHHhhhCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH-------------------GATVGGSPAEVIKKCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~adv   59 (226)
                      +||+.||+|.+|.+-+..++-+-  .+|++.|.+..++..+...                   +.-+.++.+.+++++|+
T Consensus         2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl   81 (481)
T KOG2666|consen    2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL   81 (481)
T ss_pred             ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence            58999999999999888776543  5788999998887766432                   23457788999999999


Q ss_pred             EEEecCCHH--------------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--CCc--EEecCCC
Q 027255           60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGH--FLEAPVS  121 (226)
Q Consensus        60 vi~~~p~~~--------------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~--~ld~pv~  121 (226)
                      ||+.+.++.              .++...   +-+.+.....++++.-||+....++.+...+...  |+.  .|.-|-+
T Consensus        82 vfisvntptkt~g~gkg~aadlky~es~a---r~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpef  158 (481)
T KOG2666|consen   82 VFISVNTPTKTYGLGKGKAADLKYWESAA---RMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEF  158 (481)
T ss_pred             EEEEecCCcccccCCCCcccchhHHHHHH---HHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHH
Confidence            999986543              122222   3344555678999999999999999999998532  554  4666654


Q ss_pred             CChHhh----ccCcEEEEeccCC
Q 027255          122 GSKQPA----ETGQLVILSAGEK  140 (226)
Q Consensus       122 g~~~~a----~~g~~~~~~gg~~  140 (226)
                      =.+..|    .++. -++.||++
T Consensus       159 laegtaikdl~npd-rvligg~e  180 (481)
T KOG2666|consen  159 LAEGTAIKDLFNPD-RVLIGGRE  180 (481)
T ss_pred             hcccchhhhhcCCc-eEEECCCC
Confidence            322222    1222 27888887

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.48  E-value=1.8e-07  Score=83.20  Aligned_cols=69  Identities=30%  Similarity=0.466  Sum_probs=56.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CCcc--cCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATV--GGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~~~--~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      ++|+|||+|.||..+++.|...|+ +|++++|++++.+.+... |...  ..+..+.+.++|+||.|++.+..
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~  255 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP  255 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence            479999999999999999999997 799999999998877654 4332  24456677889999999987543

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.48  E-value=3.4e-07  Score=81.26  Aligned_cols=69  Identities=26%  Similarity=0.411  Sum_probs=56.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      .+|+|||+|.||..+++.|...| .+|++|||++++.+.+.+. |..  ...+..+++.++|+||.|++.+..
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~  253 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHP  253 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCc
Confidence            37999999999999999999999 7899999999988777654 432  224566778899999999876543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.44  E-value=9e-07  Score=68.87  Aligned_cols=73  Identities=26%  Similarity=0.337  Sum_probs=58.4

Q ss_pred             CeEEEEecChh-HHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      .+|.|||.|.| |..+|++|.+.|.+|++.+|+.              .++.+.+.++|+||++++.+.    ++ ..  
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii-~~--  103 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV-KG--  103 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee-cH--
Confidence            37899999997 9999999999999999999984              245678899999999998854    22 11  


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                        +.++++.++||.+.-
T Consensus       104 --~~~~~~~viIDla~p  118 (168)
T cd01080         104 --DMVKPGAVVIDVGIN  118 (168)
T ss_pred             --HHccCCeEEEEccCC
Confidence              235678999998864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07589 ornithine cyclodeaminase; Validated

Probab=98.43  E-value=4.7e-07  Score=78.26  Aligned_cols=110  Identities=13%  Similarity=0.137  Sum_probs=76.5

Q ss_pred             eEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      +++|||+|..+...++.+..-  -.+|++|+|++++.+.+.+.    +  +.++.+++++++++|+|++++|+.. -..+
T Consensus       131 ~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~Pv  209 (346)
T PRK07589        131 TMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NATI  209 (346)
T ss_pred             EEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CCce
Confidence            589999999999988777642  24799999999998876642    3  4457899999999999999997532 1122


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +.     .+.+++|+.|.-..+..|...+--.+.+.+ .-.|+|.
T Consensus       210 l~-----~~~lkpG~hV~aIGs~~p~~~Eld~~~l~~-a~v~vD~  248 (346)
T PRK07589        210 LT-----DDMVEPGMHINAVGGDCPGKTELHPDILRR-ARVFVEY  248 (346)
T ss_pred             ec-----HHHcCCCcEEEecCCCCCCcccCCHHHHhc-CEEEECC
Confidence            31     134678998888877766543322333333 3356674

>PRK10206 putative oxidoreductase; Provisional

Probab=98.42  E-value=2.7e-06  Score=73.73  Aligned_cols=111  Identities=13%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             CeEEEEecChhHH-HHHHHHHh--CCCeEE-EEcCCchhHHHHHHCC-CcccCCHHHHhh--hCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGK-AISMNLLR--NGFKVT-VWNRTLSKCDELVAHG-ATVGGSPAEVIK--KCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~--~G~~V~-~~dr~~~~~~~l~~~g-~~~~~s~~~~~~--~advvi~~~p~~~~~~~v   73 (226)
                      +||||||+|.++. ..+..+..  .+++|. ++|+++++.+.....+ +..+++.+++++  +.|+|++|+|+..+.+.+
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~   81 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA   81 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence            4899999999765 34554533  356764 7899986653333344 667889999996  479999999998887766


Q ss_pred             hhcccccccccCCCcE-EEecC-CCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKG-YIDMS-TVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~i-vvd~s-t~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .       ..++.|+. +++-- +.+....++|.+.++++|+.+.-+
T Consensus        82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~  121 (344)
T PRK10206         82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPY  121 (344)
T ss_pred             H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEE
Confidence            5       44556654 44433 346788899999888888765444

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.42  E-value=3.5e-06  Score=71.53  Aligned_cols=111  Identities=18%  Similarity=0.249  Sum_probs=89.3

Q ss_pred             eEEEEecChhHHHHHHHHHh---CCCeEE-EEcCCchhHHHHHHC-CC---cccCCHHHHhhhC--CeEEEecCCHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR---NGFKVT-VWNRTLSKCDELVAH-GA---TVGGSPAEVIKKC--TITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~---~G~~V~-~~dr~~~~~~~l~~~-g~---~~~~s~~~~~~~a--dvvi~~~p~~~~~~   71 (226)
                      |+||+|+|.|++-.++.|.-   .+|.|. +++|+.+++.++++. ++   ++..|.+|++++.  |+|.+..|++++.+
T Consensus         8 r~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~e   87 (351)
T KOG2741|consen    8 RWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYE   87 (351)
T ss_pred             EEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHH
Confidence            79999999999999999863   478755 679999999888775 43   6788999999875  99999999998887


Q ss_pred             HHhhcccccccccCCCc-EEEecCC-CCHHHHHHHHHHHHhcCCcEEecC
Q 027255           72 SVVFDKGGVLEQICPGK-GYIDMST-VDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~-ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      -+.       ..+..++ ++++--. .+..+.+++-+.++++|+.++++-
T Consensus        88 vv~-------l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~  130 (351)
T KOG2741|consen   88 VVM-------LALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGL  130 (351)
T ss_pred             HHH-------HHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeee
Confidence            766       2233444 5565443 578899999999999999999884

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.42  E-value=1.2e-06  Score=76.99  Aligned_cols=115  Identities=28%  Similarity=0.351  Sum_probs=79.4

Q ss_pred             EEEEecChhHHHHHHHHHhCC-C-eEEEEcCCchhHHHHHHC--C--C-----cc--cCCHHHHhhhCCeEEEecCCHHH
Q 027255            3 VGFLGLGIMGKAISMNLLRNG-F-KVTVWNRTLSKCDELVAH--G--A-----TV--GGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G-~-~V~~~dr~~~~~~~l~~~--g--~-----~~--~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |.|||+|.+|+.+++.|++.+ + +|++.||+.++++++.+.  +  +     .+  ..++.++++++|+||.|+|.. .
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence            789999999999999999886 4 899999999999988752  2  1     11  123567788999999999774 3


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChH
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQ  125 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~  125 (226)
                      -..++      ..++..|..+||.+- ......++.+.++++|+.+|-+ .+.-|..
T Consensus        80 ~~~v~------~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~  129 (386)
T PF03435_consen   80 GEPVA------RACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS  129 (386)
T ss_dssp             HHHHH------HHHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred             hHHHH------HHHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence            33444      245667889999332 3667778888888888876544 5554443

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=98.41  E-value=1.4e-06  Score=73.53  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=86.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      +++||||+|.+|+.+|+++...|-.|+.||.-.- .+...+.|++.. +.+|++..||+|.+.+|-.++.+.++.  +.-
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin--~~t  222 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLN--DET  222 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccC--HHH
Confidence            4689999999999999999999988888875322 234555677764 799999999999999998888888874  245


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSK  111 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~  111 (226)
                      +..+++|..||+++....-+...+-+.+..-
T Consensus       223 fA~mKkGVriIN~aRGGvVDe~ALv~Al~sG  253 (406)
T KOG0068|consen  223 FAKMKKGVRIINVARGGVVDEPALVRALDSG  253 (406)
T ss_pred             HHHhhCCcEEEEecCCceechHHHHHHHhcC
Confidence            6778999999999998777777777777553

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.41  E-value=9.6e-07  Score=75.26  Aligned_cols=63  Identities=13%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHH----HC----C--Ccc--cCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----AH----G--ATV--GGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~----~~----g--~~~--~~s~~~~~~~advvi~~~   64 (226)
                      |||+|||+|.||..+|..++..|+ +|.++|+++++.+...    ..    +  .+.  +.+. +.+++||+||++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence            689999999999999999999876 9999999887654322    11    1  122  3444 5678999999986

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=98.40  E-value=5.7e-07  Score=76.93  Aligned_cols=110  Identities=15%  Similarity=0.262  Sum_probs=67.5

Q ss_pred             eEEEEecChhHHHHHHHHHh-CC-CeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~-~G-~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      +++|||+|..+...++.+.. .. .+|++|+|+++++++|.+.    +  +..+.++++++++||+|++|+|..... .+
T Consensus       130 ~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P~  208 (313)
T PF02423_consen  130 TLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-PV  208 (313)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-ES
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-cc
Confidence            68999999999999998875 33 4799999999998887653    3  346889999999999999999774411 23


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +.     ...+++|.+|...++..|.. +++...+-++.-.++|.
T Consensus       209 ~~-----~~~l~~g~hi~~iGs~~~~~-~El~~~~~~~a~~~vd~  247 (313)
T PF02423_consen  209 FD-----AEWLKPGTHINAIGSYTPGM-RELDDELLKRADIVVDS  247 (313)
T ss_dssp             B------GGGS-TT-EEEE-S-SSTTB-ESB-HHHHHCSEEEESC
T ss_pred             cc-----HHHcCCCcEEEEecCCCCch-hhcCHHHhccCCEEEcc
Confidence            31     14577999999888876643 23333333333334444

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.40  E-value=1e-06  Score=77.10  Aligned_cols=92  Identities=22%  Similarity=0.364  Sum_probs=66.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcc---c---CCHHHHhhhCCeEEEecCCHH-HHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV---G---GSPAEVIKKCTITIGMLADPA-AALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~---~---~s~~~~~~~advvi~~~p~~~-~~~~v   73 (226)
                      +|.|||+|.+|...++.+...|.+|+++||++++.+.+... +..+   .   .++.+.+.++|+||.+++.+. ....+
T Consensus       169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~l  248 (370)
T TIGR00518       169 DVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKL  248 (370)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcC
Confidence            58999999999999999999999999999999988877654 3321   1   234567788999999974311 11111


Q ss_pred             hhcccccccccCCCcEEEecCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      + . ......++++.+|||.+.
T Consensus       249 i-t-~~~l~~mk~g~vIvDva~  268 (370)
T TIGR00518       249 V-S-NSLVAQMKPGAVIVDVAI  268 (370)
T ss_pred             c-C-HHHHhcCCCCCEEEEEec
Confidence            1 1 223355788999999874

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.38  E-value=1.4e-06  Score=77.61  Aligned_cols=119  Identities=24%  Similarity=0.374  Sum_probs=82.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--------C--Ce-EEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--------G--FK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--------G--~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~   67 (226)
                      ++||+||+|.+|+.+++.|.++        |  .+ +.+++|++++.+.+...+..++.++++++++  .|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            3799999999999999888653        3  34 4467998877543322345677889999864  69999988653


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE-EecCCCCChH
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHF-LEAPVSGSKQ  125 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~-ld~pv~g~~~  125 (226)
                      ....+.+      ...++.|+.||.... ......+++.+.++++|+.+ .++-|.|+-|
T Consensus        84 ~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiP  137 (426)
T PRK06349         84 EPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIP  137 (426)
T ss_pred             hHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCc
Confidence            3222332      356778888886554 23456678888888889864 4676666644

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.35  E-value=1.5e-06  Score=69.15  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=64.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCc--c--cCC---HHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GAT--V--GGS---PAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~--~--~~s---~~~~~~~advvi~~~p~~   67 (226)
                      +++.|+|. |.+|+.+++.|++.|++|++++|++++.+.+.+.     +..  .  ..+   ..++++++|+||.++|.+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g  108 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG  108 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence            47899995 9999999999999999999999999988776542     221  1  122   246778899999999876


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCCC
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~   97 (226)
                      ......      .....+++.+++|+.-..
T Consensus       109 ~~~~~~------~~~~~~~~~vv~D~~~~~  132 (194)
T cd01078         109 VELLEK------LAWAPKPLAVAADVNAVP  132 (194)
T ss_pred             ceechh------hhcccCceeEEEEccCCC
Confidence            531111      112344578899986543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.35  E-value=1.5e-06  Score=76.21  Aligned_cols=66  Identities=30%  Similarity=0.473  Sum_probs=56.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhhCCeEEEecCCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~~~~~~advvi~~~p~~   67 (226)
                      ++.|||+|.||.-.|++|..+| .+|++.||+.++++.++.. |+.  ...+..+.+..+|+||+++..+
T Consensus       180 ~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~  249 (414)
T COG0373         180 KVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP  249 (414)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence            6899999999999999999999 6799999999999998775 533  3456677788999999997554

>PRK06199 ornithine cyclodeaminase; Validated

Probab=98.35  E-value=1.1e-06  Score=76.93  Aligned_cols=89  Identities=24%  Similarity=0.276  Sum_probs=65.7

Q ss_pred             eEEEEecChhHHHHHHHHHhC--C-CeEEEEcCCchhHHHHHHC------C---CcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN--G-FKVTVWNRTLSKCDELVAH------G---ATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~--G-~~V~~~dr~~~~~~~l~~~------g---~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      +++|||+|.++....+.+..-  . -+|++|+|++++.+.+.+.      +   +.++.++++++++||+|++|++..+.
T Consensus       157 ~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~~  236 (379)
T PRK06199        157 VVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETG  236 (379)
T ss_pred             EEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCCC
Confidence            689999999999999998762  2 3799999999998876542      2   45678999999999999999975331


Q ss_pred             ---HHHHhhcccccccccCCCcEEEecCC
Q 027255           70 ---ALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        70 ---~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                         ..-++.     .+.+++|+.|+..++
T Consensus       237 ~~s~~Pv~~-----~~~lkpG~hv~~ig~  260 (379)
T PRK06199        237 DPSTYPYVK-----REWVKPGAFLLMPAA  260 (379)
T ss_pred             CCCcCcEec-----HHHcCCCcEEecCCc
Confidence               112231     134678887765444

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=98.33  E-value=4.2e-06  Score=70.39  Aligned_cols=89  Identities=17%  Similarity=0.193  Sum_probs=66.0

Q ss_pred             CeEEEEecChhHHHHHHHHHh-CCCeEE-EEcCCchhH--HHHHHCCCcc-cCCHHHHhh--hCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKC--DELVAHGATV-GGSPAEVIK--KCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~-~G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~~~~~--~advvi~~~p~~~~~~~v   73 (226)
                      +||||||+|.||+.++..+.+ .++++. ++|+++++.  +...+.|+.. ..+.+++++  +.|+|++++|+..+.+..
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a   81 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA   81 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            589999999999999888775 456755 679888753  3344467754 457888875  478899999997776655


Q ss_pred             hhcccccccccCCCcEEEecCCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .       ..++.|+.++|.+..
T Consensus        82 ~-------~al~aGk~VIdekPa   97 (285)
T TIGR03215        82 R-------LLAELGKIVIDLTPA   97 (285)
T ss_pred             H-------HHHHcCCEEEECCcc
Confidence            4       456688888887754

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.33  E-value=2.9e-06  Score=69.25  Aligned_cols=108  Identities=16%  Similarity=0.229  Sum_probs=71.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC---eEEEEcCC----chhH-------HHHHHC-CC-cccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRT----LSKC-------DELVAH-GA-TVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~---~V~~~dr~----~~~~-------~~l~~~-g~-~~~~s~~~~~~~advvi~~~   64 (226)
                      ++|.|+|+|.+|+.+|..|.+.|.   +++++||+    .++.       +.+.+. +. ....++.++++++|+||-++
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT  105 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS  105 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence            478999999999999999999996   59999999    4543       233322 11 11136778888999999999


Q ss_pred             CCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEec
Q 027255           65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEA  118 (226)
Q Consensus        65 p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~  118 (226)
                      |..-..++.+       +.+.++.++++.++-.+   +.+.+.+.+.|+. +.++
T Consensus       106 ~~G~~~~~~l-------~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~i~a~G  150 (226)
T cd05311         106 RPGVVKKEMI-------KKMAKDPIVFALANPVP---EIWPEEAKEAGADIVATG  150 (226)
T ss_pred             CCCCCCHHHH-------HhhCCCCEEEEeCCCCC---cCCHHHHHHcCCcEEEeC
Confidence            7432222333       44456778888874332   3455666666775 5554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.32  E-value=2.7e-06  Score=69.35  Aligned_cols=68  Identities=19%  Similarity=0.393  Sum_probs=53.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH--CCCcc---cCC----HHHH-hhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGATV---GGS----PAEV-IKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~--~g~~~---~~s----~~~~-~~~advvi~~~p~~~   68 (226)
                      |+|.|||+|.+|..+|+.|.+.||+|.+.|++++++++...  ....+   ..+    +.++ ++++|+++.++.++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence            89999999999999999999999999999999999988554  33222   122    2233 456899999997743

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.32  E-value=2.6e-06  Score=72.71  Aligned_cols=66  Identities=17%  Similarity=0.249  Sum_probs=50.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHH----HHHCC-----CcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAHG-----ATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~----l~~~g-----~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.+|..+|..|+.+|  ++|.++|+++++.+.    +....     .....+..+.+++||+||++.+.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCC
Confidence            89999999999999999999999  589999999887653    22111     11112334567899999999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.31  E-value=3.9e-06  Score=74.71  Aligned_cols=66  Identities=11%  Similarity=0.199  Sum_probs=52.6

Q ss_pred             CeEEEEecChhHHHHHH--HH----HhCCCeEEEEcCCchhHHHHHHC------------CCcccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISM--NL----LRNGFKVTVWNRTLSKCDELVAH------------GATVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~--~l----~~~G~~V~~~dr~~~~~~~l~~~------------g~~~~~s~~~~~~~advvi~   62 (226)
                      |||+|||.|.||..++.  .+    ..+|++|.+||+++++.+.....            .+..+++..+++++||+||+
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            68999999999998665  34    44678999999999887765331            13457788899999999999


Q ss_pred             ecCC
Q 027255           63 MLAD   66 (226)
Q Consensus        63 ~~p~   66 (226)
                      ++|.
T Consensus        81 ai~~   84 (423)
T cd05297          81 TIQV   84 (423)
T ss_pred             eeEe
Confidence            9984

linked to 3D####ucture

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.30  E-value=1.5e-06  Score=63.98  Aligned_cols=88  Identities=19%  Similarity=0.248  Sum_probs=58.3

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCC-Ce-EEEEcCCchhHHHHHHC--------CCcccCCHHHHhhhCCeEEEecCCHHHH
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNG-FK-VTVWNRTLSKCDELVAH--------GATVGGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G-~~-V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      ||+||| .|.+|+.+.+.|.++- ++ +.++.++.+.-..+...        ...+.....+.+.++|+||+|+|+. ..
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-AS   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HH
Confidence            799999 9999999999999853 34 55667666332223222        1223333344558999999999874 44


Q ss_pred             HHHhhcccccccccCCCcEEEecCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .+..   .   ..+++|..|||.|+.
T Consensus        80 ~~~~---~---~~~~~g~~ViD~s~~   99 (121)
T PF01118_consen   80 KELA---P---KLLKAGIKVIDLSGD   99 (121)
T ss_dssp             HHHH---H---HHHHTTSEEEESSST
T ss_pred             HHHH---H---HHhhCCcEEEeCCHH
Confidence            4544   2   235688999999975

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=98.29  E-value=1.1e-05  Score=61.00  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=74.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|.+|+.++++|++.|+ +++++|.+.-....+..+        |...+....+.++  ..++-+...+....-
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            68999999999999999999997 699998775444344332        2222222333322  134444444321111


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      ...       ...+.+-.+||+++.. +.....+.+.+++.++.|+++.+.|
T Consensus        81 ~~~-------~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g  124 (143)
T cd01483          81 DNL-------DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG  124 (143)
T ss_pred             hhH-------HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            011       1334466788888776 6678889999999999999998877

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.27  E-value=1.5e-06  Score=76.97  Aligned_cols=69  Identities=20%  Similarity=0.235  Sum_probs=56.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-C-Cc--ccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G-AT--VGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g-~~--~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      ++|.|||+|.||+.++++|...|. +++++||++++++.+.+. + ..  ..++..+.+.++|+||.|++.+..
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~  255 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY  255 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence            379999999999999999999995 699999999999988774 3 32  234556778899999999987654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.24  E-value=5.2e-06  Score=70.83  Aligned_cols=66  Identities=14%  Similarity=0.189  Sum_probs=51.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHC--------C--CcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH--------G--ATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~--------g--~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      +||+|||+|.+|+.+|..|+..|  ++|.++|+++++++.+...        +  ........+.+++||+||++...
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~   78 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA   78 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence            58999999999999999999999  6899999999987655431        1  12222333457899999999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.24  E-value=4.3e-06  Score=69.08  Aligned_cols=70  Identities=17%  Similarity=0.235  Sum_probs=59.3

Q ss_pred             CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC
Q 027255           24 FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        24 ~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~   97 (226)
                      ++|++|+|++++.+.+.+. |+..+.+..++++++|+||+|++ +..+++++   ..+.+.+.++++||+++..-
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi   80 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGV   80 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCC
Confidence            6899999999999888664 88888899999999999999998 68899998   66766666778999987653

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK04148 hypothetical protein; Provisional

Probab=98.22  E-value=1.4e-05  Score=59.53  Aligned_cols=90  Identities=14%  Similarity=0.132  Sum_probs=66.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|..||+| -|..+|..|.+.|++|++.|.++..++.+++.+..+     ....-+.-+++|.|..+-|.++..+.++ 
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~-   95 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL-   95 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence            469999999 999999999999999999999999999888876543     3344466788999998888866555554 


Q ss_pred             cccccccccCCCcEEEecCC
Q 027255           76 DKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st   95 (226)
                         .+.......-+|.-++.
T Consensus        96 ---~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         96 ---ELAKKINVPLIIKPLSG  112 (134)
T ss_pred             ---HHHHHcCCCEEEEcCCC
Confidence               34444434444444443

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.21  E-value=6.7e-06  Score=56.73  Aligned_cols=62  Identities=29%  Similarity=0.356  Sum_probs=49.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++++|+|.|.+|..++..|... +.+|++|||                          |++|.|++.+....+-      
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~------   71 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE------   71 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH------
Confidence            3799999999999999999998 678999999                          9999999875544331      


Q ss_pred             cccccCCCcEEEecC
Q 027255           80 VLEQICPGKGYIDMS   94 (226)
Q Consensus        80 l~~~l~~g~ivvd~s   94 (226)
                      ....+.++.+|+|++
T Consensus        72 ~~~~~~~~~~v~~~a   86 (86)
T cd05191          72 ATAKINEGAVVIDLA   86 (86)
T ss_pred             HHHhcCCCCEEEecC
Confidence            113456788888864

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=98.21  E-value=5.4e-06  Score=71.89  Aligned_cols=89  Identities=19%  Similarity=0.281  Sum_probs=59.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHH-C----CC---ccc-CCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-H----GA---TVG-GSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~-~----g~---~~~-~s~~~~~~~advvi~~~p~~~   68 (226)
                      |||+|||+ |.+|..+.+.|.++ ++++. +++++.+.-+.+.. .    +.   ... .+.+++.+++|+||+|+|+..
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            79999998 99999999999976 56777 55654432222221 1    11   111 145566668999999999964


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      + +++.   .   .....|..|||.|+.
T Consensus        81 s-~~~~---~---~~~~~G~~VIDlS~~  101 (346)
T TIGR01850        81 S-AELA---P---ELLAAGVKVIDLSAD  101 (346)
T ss_pred             H-HHHH---H---HHHhCCCEEEeCChh
Confidence            4 4443   2   223478999999974

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.21  E-value=9.8e-06  Score=69.52  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHH----H----CC--Cc--ccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELV----A----HG--AT--VGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~----~----~g--~~--~~~s~~~~~~~advvi~~~   64 (226)
                      +||+|||+|.||..+|..++..| .++.++|+++++.+...    .    .+  ..  ...+.+ .+++||+|+++.
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            58999999999999999999988 68999999887543211    1    01  12  234555 779999999998

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=98.20  E-value=1.2e-05  Score=68.00  Aligned_cols=110  Identities=11%  Similarity=0.170  Sum_probs=75.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhH--HHHHHCCCcc-cCCHHHHhh-----hCCeEEEecCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKC--DELVAHGATV-GGSPAEVIK-----KCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~~~~~-----~advvi~~~p~~~~~   70 (226)
                      +||||||+|.+|+.+...+.+. +.++. ++|++++..  ....+.|+.. ..+.+++++     +.|+||.++|...+.
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~   84 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHV   84 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHH
Confidence            4799999999999988887754 56654 679988642  3444568765 477888885     478899999886655


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCC------HHHHHHHHHHHHhcCCcEEecC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVD------HETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~------~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +...       ...+.|+.+||.+...      |+...+  +.....+..++.+|
T Consensus        85 e~a~-------~a~eaGk~VID~sPA~~~PlvVP~VN~~--~~~~~~~~~iia~p  130 (302)
T PRK08300         85 RHAA-------KLREAGIRAIDLTPAAIGPYCVPAVNLD--EHLDAPNVNMVTCG  130 (302)
T ss_pred             HHHH-------HHHHcCCeEEECCccccCCcccCcCCHH--HHhcccCCCEEECc
Confidence            5443       3456899999988643      222211  12223456777777

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.20  E-value=3.5e-06  Score=61.58  Aligned_cols=104  Identities=15%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             CeEEEEe----cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLG----LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG----~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      ++|+|||    .+.+|..+.++|.++|++|+..|...+.+     .|...+.++.|.-...|++++++|. +.+.+++  
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v--   72 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV--   72 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH--
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHH--
Confidence            4799999    79999999999999999999998877543     4777888999844789999999976 5666776  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                       +++.+ +..+.+++..+    ...+++.+.+++.|+.++.-
T Consensus        73 -~~~~~-~g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp  108 (116)
T PF13380_consen   73 -DEAAA-LGVKAVWLQPG----AESEELIEAAREAGIRVIGP  108 (116)
T ss_dssp             -HHHHH-HT-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred             -HHHHH-cCCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence             54433 23566777666    44556777778889988744

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=98.19  E-value=6.6e-06  Score=69.40  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=74.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-C----CcccC---CHHHHhhhCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G----ATVGG---SPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g----~~~~~---s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      ++.|||+|.++++++..|...|. +|+++||++++.+.+.+. +    +....   +..+...++|+||.|+|.......
T Consensus       127 ~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~  206 (282)
T TIGR01809       127 RGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADY  206 (282)
T ss_pred             eEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCH
Confidence            68899999999999999999996 699999999999988764 1    11122   223445679999999986432211


Q ss_pred             H-hhcccc--cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           73 V-VFDKGG--VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        73 v-~~~~~~--l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      . +.....  ....+.++.+++|+--. |..+ .+.+.++++|+..+++
T Consensus       207 ~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~G  253 (282)
T TIGR01809       207 VDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVISG  253 (282)
T ss_pred             HHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEECc
Confidence            1 100000  00123467788898643 3222 3455566778777655

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=98.18  E-value=8.7e-06  Score=72.86  Aligned_cols=69  Identities=17%  Similarity=0.204  Sum_probs=55.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-CCCccc-------CCHHHH-hhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVG-------GSPAEV-IKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-~g~~~~-------~s~~~~-~~~advvi~~~p~~~~   69 (226)
                      |+|.|+|+|.+|..+++.|.+.|++|+++++++++.+.+.+ .+....       ..+.++ ++++|.|+++++++..
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            89999999999999999999999999999999999988876 443221       122333 5679999999987543

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.18  E-value=7.7e-06  Score=66.75  Aligned_cols=93  Identities=20%  Similarity=0.309  Sum_probs=74.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC----eEEEEcCCchhHHH-HHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDE-LVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~-l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      |+|||||.|+|..++++.+.+.|.    +++.+-.+...... +...|+..+.+-.+.++.+|++++++ .+..+..++ 
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl-   78 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL-   78 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence            799999999999999999999984    56666664333333 67778887777799999999999999 558899998 


Q ss_pred             cccccccccCCCcEEEecCCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~   97 (226)
                        .++...+..+++++..--..
T Consensus        79 --s~~~~~~~~~~iivS~aaG~   98 (267)
T KOG3124|consen   79 --SEIKPKVSKGKIIVSVAAGK   98 (267)
T ss_pred             --hcCccccccceEEEEEeecc
Confidence              66766677888998876543

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=98.16  E-value=7.7e-06  Score=70.88  Aligned_cols=88  Identities=19%  Similarity=0.228  Sum_probs=57.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEEE-EcCCchhHHHHHHC-----CC--cccCCHHH-HhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTV-WNRTLSKCDELVAH-----GA--TVGGSPAE-VIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~-~dr~~~~~~~l~~~-----g~--~~~~s~~~-~~~~advvi~~~p~~~~   69 (226)
                      |||+|||+ |.+|..+++.|.++ ++++.. .+|. +..+.+.+.     +.  ....+.++ ..+++|+||+|+|+..+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence            58999997 99999999999976 577654 5543 332223211     11  01222222 45679999999999655


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .+.+.       ..++.|+.|||.|+.
T Consensus        82 ~~~v~-------~a~~aG~~VID~S~~  101 (343)
T PRK00436         82 MDLAP-------QLLEAGVKVIDLSAD  101 (343)
T ss_pred             HHHHH-------HHHhCCCEEEECCcc
Confidence            44443       334578999999974

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=98.15  E-value=1.3e-05  Score=69.41  Aligned_cols=70  Identities=19%  Similarity=0.339  Sum_probs=51.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHH-------------------CCCcccCCHHHHhhhCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~-------------------~g~~~~~s~~~~~~~adv   59 (226)
                      +||||+|+|.||+.+++.+.++ +++|. +++++++....+..                   .++.+..++.++.+++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            5899999999999999998864 56755 56777655444333                   134445677888888999


Q ss_pred             EEEecCCHHHH
Q 027255           60 TIGMLADPAAA   70 (226)
Q Consensus        60 vi~~~p~~~~~   70 (226)
                      |+.|+|.....
T Consensus        82 VIdaT~~~~~~   92 (341)
T PRK04207         82 VVDATPGGVGA   92 (341)
T ss_pred             EEECCCchhhH
Confidence            99999885443

>PRK06270 homoserine dehydrogenase; Provisional

Probab=98.14  E-value=2.4e-05  Score=67.78  Aligned_cols=122  Identities=19%  Similarity=0.243  Sum_probs=78.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhC----------CCeEE-EEcCC----------chhHHHHHHC-CC-c------ccCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN----------GFKVT-VWNRT----------LSKCDELVAH-GA-T------VGGSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~----------G~~V~-~~dr~----------~~~~~~l~~~-g~-~------~~~s~~   51 (226)
                      ++|+++|+|.||+.+++.|.++          +.+|. ++|++          .+++..+.+. +. .      ...++.
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4799999999999999999765          34543 56753          3344444332 21 1      124778


Q ss_pred             HHhh--hCCeEEEecCCHHHH----HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEE-ecCCCCC
Q 027255           52 EVIK--KCTITIGMLADPAAA----LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL-EAPVSGS  123 (226)
Q Consensus        52 ~~~~--~advvi~~~p~~~~~----~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~l-d~pv~g~  123 (226)
                      ++++  +.|+|+.|+|+..+.    .+.      +...+..|+.||..++. ......++.+.++++|+.+. .+.|.++
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~------~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~g  156 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSH------CRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGA  156 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHH------HHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeec
Confidence            8874  579999999874331    222      23556788888876542 12245678888888888764 6777766


Q ss_pred             hHhhc
Q 027255          124 KQPAE  128 (226)
Q Consensus       124 ~~~a~  128 (226)
                      -|...
T Consensus       157 lPii~  161 (341)
T PRK06270        157 MPIIN  161 (341)
T ss_pred             hhHHH
Confidence            55443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=98.12  E-value=3.7e-05  Score=70.85  Aligned_cols=109  Identities=18%  Similarity=0.245  Sum_probs=72.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc---CCHHHH-----hhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEV-----IKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~---~s~~~~-----~~~advvi~~~p~~~~~~~v   73 (226)
                      +|-|+|+|.+|+.+|+.|.++|++|.++|.|+++++++.+.|..+.   .+..+.     ++++|.++++++++.....+
T Consensus       419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~i  498 (558)
T PRK10669        419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEI  498 (558)
T ss_pred             CEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHH
Confidence            4779999999999999999999999999999999999988875431   112222     35789999999886655444


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      .   ...... .+...++-.. .+++..+    .+++.|+.++=.|
T Consensus       499 v---~~~~~~-~~~~~iiar~-~~~~~~~----~l~~~Gad~vv~p  535 (558)
T PRK10669        499 V---ASAREK-RPDIEIIARA-HYDDEVA----YITERGANQVVMG  535 (558)
T ss_pred             H---HHHHHH-CCCCeEEEEE-CCHHHHH----HHHHcCCCEEECh
Confidence            4   222222 2333333222 2343333    3455677765544

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.12  E-value=9.8e-06  Score=68.93  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=46.1

Q ss_pred             EEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHH----HHHC----C----CcccCCHHHHhhhCCeEEEecC
Q 027255            3 VGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVAH----G----ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~----l~~~----g----~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |+|||+|.||..+|..++.+|+ +|+++|+++++.+.    +...    +    ++...+. +.+++||+||++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999998876 99999999876432    1111    1    1223444 55789999999773

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=1.3e-05  Score=67.41  Aligned_cols=73  Identities=18%  Similarity=0.285  Sum_probs=59.7

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      .+|.|||.|. +|.++|..|...|..|+++++..              .++.+.+++||+||.+++.+..+..       
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~-------  217 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK-------  217 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH-------
Confidence            3789999988 99999999999999999998753              3567888999999999988543221       


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                        +.+++|.+|||.++.
T Consensus       218 --~~vk~gavVIDvGi~  232 (286)
T PRK14175        218 --DVVKEGAVIIDVGNT  232 (286)
T ss_pred             --HHcCCCcEEEEcCCC
Confidence              246789999999874

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.11  E-value=4.7e-06  Score=63.04  Aligned_cols=65  Identities=17%  Similarity=0.326  Sum_probs=51.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHC----------CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~----------g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+ |..|..+|..|...+.  ++.++|+++++++.....          .........+.+++||+|+++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            89999999 9999999999998874  799999998766543211          23344466777889999999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=98.08  E-value=0.0001  Score=53.35  Aligned_cols=72  Identities=26%  Similarity=0.424  Sum_probs=55.5

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhhCCeEEEecCCHHHHHHHh
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~----~~~advvi~~~p~~~~~~~v~   74 (226)
                      |-|+|+|.+|..+++.|.+.+.+|.+.++++++.+.+.+.|..+.    .++..+    +++++.|+++++++.....+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~   80 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA   80 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence            568999999999999999977799999999999999999885441    222222    356899999998876554444

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=98.07  E-value=2.1e-05  Score=57.34  Aligned_cols=102  Identities=17%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             ecChhHHHHHHHHHhC----CCeE-EEEcCC--chhHHHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhcc
Q 027255            7 GLGIMGKAISMNLLRN----GFKV-TVWNRT--LSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         7 G~G~mG~~~A~~l~~~----G~~V-~~~dr~--~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~~   77 (226)
                      |+|.+|+.+++.|.++    +++| .+++|+  .+....-...+...+.+++++++  ..|+||-|.+. +.+.+.+   
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~---   76 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYY---   76 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHH---
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHH---
Confidence            8999999999999986    4564 467888  22222222235667889999988  89999999766 5565555   


Q ss_pred             cccccccCCCcEEEecCCC---CHHHHHHHHHHHHhcCCcE
Q 027255           78 GGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHF  115 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~---~~~~~~~l~~~~~~~g~~~  115 (226)
                         .+.++.|..||..|..   ++...++|.+.+++.|.++
T Consensus        77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~  114 (117)
T PF03447_consen   77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI  114 (117)
T ss_dssp             ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred             ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence               3566789999998864   4457788888888888765

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.05  E-value=6.6e-05  Score=60.22  Aligned_cols=110  Identities=21%  Similarity=0.245  Sum_probs=70.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHCC-CcccC-C-HHHHhhhCCeEEEecCCHHHHHHHhh-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG-S-PAEVIKKCTITIGMLADPAAALSVVF-   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~-s-~~~~~~~advvi~~~p~~~~~~~v~~-   75 (226)
                      ++|.|||.|.+|...++.|.+.|++|++++++.. .+..+...+ +.... . ..+.+.++|+||.++.+++.-..+.. 
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~i~~~   90 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQVKED   90 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHHHHHH
Confidence            4789999999999999999999999999987653 334554443 22211 1 12345789999999977543332221 


Q ss_pred             -cccccc--------------cccCCCcEEEecCC--CCHHHHHHHHHHHHh
Q 027255           76 -DKGGVL--------------EQICPGKGYIDMST--VDHETSIKISRAITS  110 (226)
Q Consensus        76 -~~~~l~--------------~~l~~g~ivvd~st--~~~~~~~~l~~~~~~  110 (226)
                       ....+.              .....|.+.|-.||  .+|..++.+.+.+.+
T Consensus        91 a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~  142 (202)
T PRK06718         91 LPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEA  142 (202)
T ss_pred             HHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence             000111              11234666666665  488888888887765

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=98.04  E-value=1.9e-05  Score=66.40  Aligned_cols=110  Identities=24%  Similarity=0.305  Sum_probs=76.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC----CCc-ccCCHHHH--hhhCCeEEEecCCHHHHHH-
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----GAT-VGGSPAEV--IKKCTITIGMLADPAAALS-   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~----g~~-~~~s~~~~--~~~advvi~~~p~~~~~~~-   72 (226)
                      ++.|+|+|.++++++..|++.|. +++++||+.++.+++.+.    +.. ......+.  .+++|+||-++|-.-.-.. 
T Consensus       128 ~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~  207 (283)
T COG0169         128 RVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEG  207 (283)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCCC
Confidence            58999999999999999999995 799999999999988764    211 11222222  1258999999986433221 


Q ss_pred             --HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           73 --VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        73 --v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                        .+    . ...++++.++.|+--.... + .+.++++++|...+|+
T Consensus       208 ~~~~----~-~~~l~~~~~v~D~vY~P~~-T-plL~~A~~~G~~~idG  248 (283)
T COG0169         208 DSPV----P-AELLPKGAIVYDVVYNPLE-T-PLLREARAQGAKTIDG  248 (283)
T ss_pred             CCCC----c-HHhcCcCCEEEEeccCCCC-C-HHHHHHHHcCCeEECc
Confidence              11    1 3457788999998654322 2 3566777888887776

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=98.04  E-value=6.4e-05  Score=69.89  Aligned_cols=108  Identities=18%  Similarity=0.252  Sum_probs=74.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc---CCHHHH-----hhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEV-----IKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~---~s~~~~-----~~~advvi~~~p~~~~~~~v   73 (226)
                      +|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.|..+.   .+-.+.     ++++|.+++++++++....+
T Consensus       402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i  481 (601)
T PRK03659        402 QVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKI  481 (601)
T ss_pred             CEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHH
Confidence            5889999999999999999999999999999999999988875431   122222     35789999999997766555


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +   ....+ ..|...++--+ .++..    .+.+.+.|+..+--
T Consensus       482 ~---~~~r~-~~p~~~IiaRa-~~~~~----~~~L~~~Ga~~vv~  517 (601)
T PRK03659        482 V---ELCQQ-HFPHLHILARA-RGRVE----AHELLQAGVTQFSR  517 (601)
T ss_pred             H---HHHHH-HCCCCeEEEEe-CCHHH----HHHHHhCCCCEEEc
Confidence            5   22333 33443333322 23333    34555668776543

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.03  E-value=4.2e-05  Score=65.67  Aligned_cols=63  Identities=14%  Similarity=0.220  Sum_probs=47.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHH--HH---HH---CC----CcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCD--EL---VA---HG----ATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~--~l---~~---~g----~~~~~s~~~~~~~advvi~~~   64 (226)
                      +||+|||+|.||..+|..++..|+ +|.++|+++++++  .+   ..   .+    +..+.+. +.+++||+||++.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            489999999999999999999995 8999999998542  11   11   11    2223455 5779999999965

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=98.02  E-value=9.1e-06  Score=63.31  Aligned_cols=65  Identities=23%  Similarity=0.213  Sum_probs=51.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+ |..|+.+++-..+.||+|+.+-||++++..++..     .+---++..+.+.+-|+||.+.-
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence            89999998 9999999999999999999999999998654221     12112344577788999999863

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.99  E-value=1.2e-05  Score=64.55  Aligned_cols=92  Identities=15%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC--------------CcccCCHHHHhhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG--------------ATVGGSPAEVIKK   56 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g--------------~~~~~s~~~~~~~   56 (226)
                      ||+|+|.|..|+.+|..++..||+|.+||..++.+....           +.|              +..++++.|++++
T Consensus         5 ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~   84 (313)
T KOG2305|consen    5 KIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKG   84 (313)
T ss_pred             ceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhh
Confidence            799999999999999999999999999999988754321           222              3557899999999


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +=.|-.|+|.+-.++.-++  .++-+.+ ..+.|+..||+
T Consensus        85 Ai~iQEcvpE~L~lkk~ly--~qlD~i~-d~~tIlaSSTS  121 (313)
T KOG2305|consen   85 AIHIQECVPEDLNLKKQLY--KQLDEIA-DPTTILASSTS  121 (313)
T ss_pred             hhhHHhhchHhhHHHHHHH--HHHHHhc-CCceEEecccc
Confidence            9888899999877776664  3343334 44555555554

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.98  E-value=3.8e-05  Score=69.48  Aligned_cols=88  Identities=18%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-CC--------------------------HHHHh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GS--------------------------PAEVI   54 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--------------------------~~~~~   54 (226)
                      |+.|+|+|.+|...+..+...|..|+++|+++++.+.+...|.... -+                          ..+.+
T Consensus       166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~  245 (511)
T TIGR00561       166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQA  245 (511)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999888877775430 01                          23445


Q ss_pred             hhCCeEEEec-----CCHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255           55 KKCTITIGML-----ADPAAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        55 ~~advvi~~~-----p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      +++|+||.++     |.+.-+.      ++..+.+++|.+|||.+.
T Consensus       246 ~~~DIVI~TalipG~~aP~Lit------~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       246 KEVDIIITTALIPGKPAPKLIT------EEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             CCCCEEEECcccCCCCCCeeeh------HHHHhhCCCCCEEEEeee
Confidence            7799999988     4431111      223467888999998874

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.98  E-value=4.1e-05  Score=62.51  Aligned_cols=107  Identities=18%  Similarity=0.201  Sum_probs=71.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcC----------CchhHHHHHHC-C-------CcccCCHHHHh-hhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVI-KKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr----------~~~~~~~l~~~-g-------~~~~~s~~~~~-~~advv   60 (226)
                      ++|.|.|+|++|+.+|+.|.+.|.+|+ +.|.          +.+.+.++.+. |       .... +.++.. .+||++
T Consensus        32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dvl  110 (227)
T cd01076          32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDIL  110 (227)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccEE
Confidence            589999999999999999999999988 6677          66666655443 2       1111 223322 368999


Q ss_pred             EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +-|.+.+....+.+   .    .+ +=++|+...+. |-+ .+..+.++++|+.|+.-
T Consensus       111 ip~a~~~~i~~~~~---~----~l-~a~~I~egAN~-~~t-~~a~~~L~~rGi~~~PD  158 (227)
T cd01076         111 IPAALENQITADNA---D----RI-KAKIIVEAANG-PTT-PEADEILHERGVLVVPD  158 (227)
T ss_pred             EecCccCccCHHHH---h----hc-eeeEEEeCCCC-CCC-HHHHHHHHHCCCEEECh
Confidence            99987755444444   2    23 23456665554 333 55677888999988654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=3.4e-05  Score=64.76  Aligned_cols=74  Identities=20%  Similarity=0.319  Sum_probs=60.2

Q ss_pred             CeEEEEecChh-HHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||.|.. |.+++..|.+.|..|++++..              +.++.+.++++|+||++++.+..+..       
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~~-------  217 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLTA-------  217 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccCH-------
Confidence            37899999988 999999999999999998653              24677888999999999997542211       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        ..+++|.++||.++..
T Consensus       218 --~~ik~gavVIDVGin~  233 (285)
T PRK14189        218 --DMVKPGATVIDVGMNR  233 (285)
T ss_pred             --HHcCCCCEEEEccccc
Confidence              5578999999998753

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.97  E-value=1.6e-05  Score=61.87  Aligned_cols=93  Identities=24%  Similarity=0.198  Sum_probs=64.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC--------------------------CHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------------------------SPAEVI   54 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--------------------------s~~~~~   54 (226)
                      .+|.|+|.|..|..-++.+...|++|+++|.++++.+.+...+.....                          .+.+.+
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i  100 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI  100 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence            379999999999999999999999999999999988887776532211                          244666


Q ss_pred             hhCCeEEEecC-CHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255           55 KKCTITIGMLA-DPAAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        55 ~~advvi~~~p-~~~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      +.+|+||.+.- .......++.  ++-.+.++++.+|+|.|.
T Consensus       101 ~~~d~vI~~~~~~~~~~P~lvt--~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen  101 APADIVIGNGLYWGKRAPRLVT--EEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HH-SEEEEHHHBTTSS---SBE--HHHHHTSSTTEEEEETTG
T ss_pred             hhCcEEeeecccCCCCCCEEEE--hHHhhccCCCceEEEEEe
Confidence            78999997542 2222222221  233466889999999874

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.92  E-value=5.1e-05  Score=64.26  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=71.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCc---hhHHHHHH----CC--Ccc--c--C---CHHHHhhhCCeEEEec
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL---SKCDELVA----HG--ATV--G--G---SPAEVIKKCTITIGML   64 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~---~~~~~l~~----~g--~~~--~--~---s~~~~~~~advvi~~~   64 (226)
                      ++.|+|.|.+|++++..|++.|.+ |++++|++   ++.+++.+    .+  +..  +  .   +..+.++.+|+||.++
T Consensus       128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaT  207 (289)
T PRK12548        128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNAT  207 (289)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeC
Confidence            578999999999999999999986 99999997   56655433    11  111  1  1   1233456789999999


Q ss_pred             CCHHH--HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           65 ADPAA--ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        65 p~~~~--~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      |-.-.  .....+   .-...+.++.+++|+.-....  -.+.+.++++|+..+++
T Consensus       208 p~Gm~~~~~~~~~---~~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~G  258 (289)
T PRK12548        208 LVGMKPNDGETNI---KDTSVFRKDLVVADTVYNPKK--TKLLEDAEAAGCKTVGG  258 (289)
T ss_pred             CCCCCCCCCCCCC---CcHHhcCCCCEEEEecCCCCC--CHHHHHHHHCCCeeeCc
Confidence            85321  000000   001346678899998754322  23556667778776665

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.92  E-value=4.9e-05  Score=63.43  Aligned_cols=62  Identities=16%  Similarity=0.327  Sum_probs=48.9

Q ss_pred             EEEEec-ChhHHHHHHHHHhCC----CeEEEEcCCchhHHHHHH-----------CCCcccCCHHHHhhhCCeEEEec
Q 027255            3 VGFLGL-GIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-----------HGATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G----~~V~~~dr~~~~~~~l~~-----------~g~~~~~s~~~~~~~advvi~~~   64 (226)
                      |+|||+ |.||..++..|+..|    .+|.++|+++++++....           ..+..++++.+++++||+|+++.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~   78 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA   78 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence            689999 999999999999988    789999999876554322           12233556688899999999954

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.89  E-value=5.1e-05  Score=64.01  Aligned_cols=112  Identities=20%  Similarity=0.209  Sum_probs=73.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-----CC--cccCCH---HHHhhhCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----GA--TVGGSP---AEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-----g~--~~~~s~---~~~~~~advvi~~~p~~~~~   70 (226)
                      ++.|+|+|..+++++..|.+.|. +|+++||++++.+.+.+.     +.  ....+.   .+...++|+||-++|-.-.-
T Consensus       129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~  208 (283)
T PRK14027        129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPA  208 (283)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCC
Confidence            68899999999999999999986 699999999999888653     11  111222   33456799999999853210


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ..-.  +-. ...+.++.+++|+--.... + .+.+.++++|+..+|+
T Consensus       209 ~~~~--~~~-~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~G  251 (283)
T PRK14027        209 HPGT--AFD-VSCLTKDHWVGDVVYMPIE-T-ELLKAARALGCETLDG  251 (283)
T ss_pred             CCCC--CCC-HHHcCCCcEEEEcccCCCC-C-HHHHHHHHCCCEEEcc
Confidence            0000  000 1235677889998653222 2 3455667778877665

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.88  E-value=9.1e-05  Score=63.31  Aligned_cols=64  Identities=23%  Similarity=0.350  Sum_probs=46.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCc--hhHHHH----H----HCC--Ccc--cCCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTL--SKCDEL----V----AHG--ATV--GGSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~--~~~~~l----~----~~g--~~~--~~s~~~~~~~advvi~~   63 (226)
                      |||+|||+ |..|..++..|+..|+  +|+++||++  ++++..    .    ..+  ...  ..+. +.++++|+||++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            89999998 9999999999999987  499999965  433221    1    112  122  3344 558999999999


Q ss_pred             cC
Q 027255           64 LA   65 (226)
Q Consensus        64 ~p   65 (226)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            85

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.87  E-value=0.00011  Score=62.85  Aligned_cols=65  Identities=12%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHH----C-----CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA----H-----GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~----~-----g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      +||+|||+|.+|..+|..|+..|.  ++.++|++.++++....    .     ......+.-+.+++||+||++.-
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag   82 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG   82 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence            589999999999999999999886  79999998887544321    1     22333344566799999999753

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.87  E-value=3.8e-05  Score=66.18  Aligned_cols=109  Identities=23%  Similarity=0.244  Sum_probs=75.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-C-CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      ++|.|+|+ |.||+.+++.|..+ | .++++++|++++...+... +.....+..+++.++|+|+.+...+..   +...
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~---~~I~  232 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKG---VEID  232 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcC---CcCC
Confidence            47999998 89999999999854 5 5899999999888887654 211223577888899999988754332   2111


Q ss_pred             ccccccccCCCcEEEecCC---CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           77 KGGVLEQICPGKGYIDMST---VDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st---~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      +    +.++++.++||.+-   +.|..        .+.|+.++|+.+.--|
T Consensus       233 ~----~~l~~~~~viDiAvPRDVd~~v--------~~~~V~v~~gG~V~~p  271 (340)
T PRK14982        233 P----ETLKKPCLMIDGGYPKNLDTKV--------QGPGIHVLKGGIVEHS  271 (340)
T ss_pred             H----HHhCCCeEEEEecCCCCCCccc--------CCCCEEEEeCCccccC
Confidence            1    34468899999874   34322        2357888886554433

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.85  E-value=7.8e-05  Score=67.57  Aligned_cols=87  Identities=21%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc--CC---------------HH----------HHh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GS---------------PA----------EVI   54 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s---------------~~----------~~~   54 (226)
                      ||.|||+|.+|...+..+...|.+|+++|+++++.+...+.|++..  +.               .+          +.+
T Consensus       167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~  246 (509)
T PRK09424        167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA  246 (509)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence            7999999999999999999999999999999999998888887632  11               01          112


Q ss_pred             hhCCeEEEecCCHH-----H-HHHHhhcccccccccCCCcEEEecCC
Q 027255           55 KKCTITIGMLADPA-----A-ALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        55 ~~advvi~~~p~~~-----~-~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      +++|+||.|...+.     . .++.+       +.+++|.+|+|.+.
T Consensus       247 ~gaDVVIetag~pg~~aP~lit~~~v-------~~mkpGgvIVdvg~  286 (509)
T PRK09424        247 KEVDIIITTALIPGKPAPKLITAEMV-------ASMKPGSVIVDLAA  286 (509)
T ss_pred             CCCCEEEECCCCCcccCcchHHHHHH-------HhcCCCCEEEEEcc
Confidence            46899999985422     2 24443       66778888888775

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.85  E-value=0.00017  Score=58.46  Aligned_cols=110  Identities=17%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCe-EEEEcCCc----------hhHHHHHHCC-CcccC-----CHHHHh-hhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL----------SKCDELVAHG-ATVGG-----SPAEVI-KKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~----------~~~~~l~~~g-~~~~~-----s~~~~~-~~advvi~   62 (226)
                      ++|.|.|+|++|+.+|+.|.+.|.. |.+.|.+.          +.++...+.+ +...+     +.+++. .+||+++.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlip  103 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAP  103 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEee
Confidence            5899999999999999999999885 66789887          6665554442 22211     112322 36899999


Q ss_pred             ecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        63 ~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      |.+.+....+..       ..+ +=++|+...+. |.+. +..+.+.++|+.|+.--+
T Consensus       104 aA~~~~i~~~~a-------~~l-~a~~V~e~AN~-p~t~-~a~~~L~~~Gi~v~Pd~~  151 (217)
T cd05211         104 CALGNVIDLENA-------KKL-KAKVVAEGANN-PTTD-EALRILHERGIVVAPDIV  151 (217)
T ss_pred             ccccCccChhhH-------hhc-CccEEEeCCCC-CCCH-HHHHHHHHCCcEEEChHH
Confidence            987753332222       223 23455555543 3222 567788889988765433

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.83  E-value=5.8e-05  Score=58.92  Aligned_cols=62  Identities=27%  Similarity=0.446  Sum_probs=50.6

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecCC
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p~   66 (226)
                      |.|+|. |.+|+.+++.|.+.||+|++..|++++.+.  ..++++       ..+..++++++|+||.+++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            679996 999999999999999999999999998877  334322       22345677899999999974

...

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.82  E-value=0.00024  Score=66.30  Aligned_cols=112  Identities=22%  Similarity=0.245  Sum_probs=76.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc----cCCHHHH----hhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGSPAEV----IKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~----~~s~~~~----~~~advvi~~~p~~~~~~~v   73 (226)
                      +|-|+|+|.+|+.+++.|.++|+++++.|.|+++++.+++.|..+    .++++-+    ++++|.+++++++++....+
T Consensus       402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i  481 (621)
T PRK03562        402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQL  481 (621)
T ss_pred             cEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999999998887644    1222211    24689999999887766555


Q ss_pred             hhcccccccccCCC-cEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           74 VFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        74 ~~~~~~l~~~l~~g-~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      .   ..... +.|+ .+++-.  .++.    -.+.+.+.|+.++.-+...+
T Consensus       482 ~---~~ar~-~~p~~~iiaRa--~d~~----~~~~L~~~Gad~v~~e~~e~  522 (621)
T PRK03562        482 V---ELVKE-HFPHLQIIARA--RDVD----HYIRLRQAGVEKPERETFEG  522 (621)
T ss_pred             H---HHHHH-hCCCCeEEEEE--CCHH----HHHHHHHCCCCEEehhhHhH
Confidence            4   22222 2233 344322  2333    24455677888776555543

>PRK06392 homoserine dehydrogenase; Provisional

Probab=97.81  E-value=4.7e-05  Score=65.43  Aligned_cols=125  Identities=14%  Similarity=0.138  Sum_probs=76.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhC------C--Ce-EEEEcCCchhH-------HHH---HHCC-C--cccC--CHHHHh-h
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN------G--FK-VTVWNRTLSKC-------DEL---VAHG-A--TVGG--SPAEVI-K   55 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~------G--~~-V~~~dr~~~~~-------~~l---~~~g-~--~~~~--s~~~~~-~   55 (226)
                      |||++||+|++|+.+++.|.++      |  .+ |.++|++....       +.+   .+.| .  ....  ++.++. .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            7999999999999999999873      3  44 34557654221       111   2212 1  1112  455553 3


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCH-HHHHHHHHHHHhcCCc-EEecCCCCChHhhc
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGH-FLEAPVSGSKQPAE  128 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~-~~~~~l~~~~~~~g~~-~ld~pv~g~~~~a~  128 (226)
                      ++|+|+-|+|+...-...+   .-+.+.++.|..||-.+.... ....++.+.++++|+. +.++.|.|+-|-..
T Consensus        81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~  152 (326)
T PRK06392         81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFS  152 (326)
T ss_pred             CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhh
Confidence            6899999998532100011   112456778999998886422 3456677777778876 46787887765443

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.81  E-value=5.6e-05  Score=64.57  Aligned_cols=194  Identities=19%  Similarity=0.195  Sum_probs=111.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--------CCeEE---EEcCCchhHHHHHHCC-CcccCCH-----HHHhh--hCCeEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--------GFKVT---VWNRTLSKCDELVAHG-ATVGGSP-----AEVIK--KCTITI   61 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--------G~~V~---~~dr~~~~~~~l~~~g-~~~~~s~-----~~~~~--~advvi   61 (226)
                      ++|+++|+|.+|+.+++.|.++        |.++.   +.+|+......+.-.+ ..+..+.     .+.+.  +.|+|+
T Consensus         4 v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvv   83 (333)
T COG0460           4 VKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVVV   83 (333)
T ss_pred             EEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEEE
Confidence            4799999999999999999875        33433   3466655543111112 2233333     44443  457888


Q ss_pred             EecCC-HHHHHHHhhcccccccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCc-EEecCCCCChHhhccCcEEEEecc
Q 027255           62 GMLAD-PAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGH-FLEAPVSGSKQPAETGQLVILSAG  138 (226)
Q Consensus        62 ~~~p~-~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~-~ld~pv~g~~~~a~~g~~~~~~gg  138 (226)
                      -+++. ....+. +   +.+...++.|+.||-..... -..-.++.+.+++.|+. +.++.|.|+-|-...=+- .+. |
T Consensus        84 e~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~-~l~-g  157 (333)
T COG0460          84 ELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKLLRE-LLA-G  157 (333)
T ss_pred             ecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHHHHh-hcc-c
Confidence            88776 333332 2   33457788899998766532 22345778888888865 678888888654322111 011 2


Q ss_pred             CCCCCCCcchhhcccccccccCcccCCccchHHH---HHHHHHHHHHhhcCC-------CchHHHHHHHHHHHHHHcCCC
Q 027255          139 EKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ---KDMRLALALGDENAV-------SMPIAAAANEAFKKARSLGLG  208 (226)
Q Consensus       139 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~---kd~~~~~~~a~~~g~-------~~p~~~~~~~~~~~a~~~g~g  208 (226)
                      ++        +.+.  ..+++|.-.  |=+..|.   .+.+.+++.|+++|+       ++.-.++++++.-.+...+..
T Consensus       158 ~~--------I~~i--~GIlNGT~N--yIlt~m~~~~~~f~dal~eAq~lGyAE~DPt~DleG~DaA~Kl~ILa~~~~g~  225 (333)
T COG0460         158 DE--------ILSI--RGILNGTTN--YILTRMEEGGLSFEDALAEAQELGYAEADPTDDLEGIDAARKLVILARLAFGT  225 (333)
T ss_pred             Cc--------eEEE--EEEEeccHH--HHHHHHHccCCCHHHHHHHHHHcCCCCCCCCCCccchHHHHHHHHHHHHHcCC
Confidence            21        1111  112333222  2122221   256778888888887       456778888888888866554


Q ss_pred             CCCh
Q 027255          209 DNDF  212 (226)
Q Consensus       209 ~~d~  212 (226)
                      ....
T Consensus       226 ~~~~  229 (333)
T COG0460         226 PETL  229 (333)
T ss_pred             CCCh
Confidence            4433

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.79  E-value=0.00011  Score=56.60  Aligned_cols=75  Identities=25%  Similarity=0.382  Sum_probs=53.0

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||-+ ..|.+++..|.++|..|++++...              .++.+.++++|+||+++..+..++.       
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~~-------   95 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIKA-------   95 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B-G-------
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecccccccc-------
Confidence            478999997 599999999999999999998764              3566778899999999987654321       


Q ss_pred             cccccCCCcEEEecCCCCH
Q 027255           80 VLEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~   98 (226)
                        +.+++|.++||+++...
T Consensus        96 --~~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   96 --DWIKPGAVVIDVGINYV  112 (160)
T ss_dssp             --GGS-TTEEEEE--CEEE
T ss_pred             --ccccCCcEEEecCCccc
Confidence              34689999999987544

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.79  E-value=0.00012  Score=61.41  Aligned_cols=74  Identities=23%  Similarity=0.335  Sum_probs=60.5

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||-+. .|.+++..|.+.|..|+++++.              +.++.+.++++|+||.++..+..+..       
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~-------  218 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG-------  218 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH-------
Confidence            3689999998 9999999999999999999864              23678889999999999977553322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.+|||.++..
T Consensus       219 --~~vk~gavVIDvGin~  234 (285)
T PRK10792        219 --EWIKPGAIVIDVGINR  234 (285)
T ss_pred             --HHcCCCcEEEEccccc
Confidence              4567999999998543

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=97.78  E-value=8.6e-05  Score=62.48  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc--------------cCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255           10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus        10 ~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~--------------~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      .||..+|..|.++||+|++|+|+ ++.+.+.+.|...              ..++++ ....|+||+|++. .++++++ 
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs-~~~~~~l-   76 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKA-YQTEEAA-   76 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccc-hhHHHHH-
Confidence            47999999999999999999997 6677777665321              223344 4678999999987 4678887 


Q ss_pred             cccccccccCCCcEEEecCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~   96 (226)
                        +.+.+.+.++++||.+...
T Consensus        77 --~~l~~~l~~~~~iv~~qNG   95 (293)
T TIGR00745        77 --ALLLPLIGKNTKVLFLQNG   95 (293)
T ss_pred             --HHhHhhcCCCCEEEEccCC
Confidence              7788888888888876654

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.78  E-value=6.6e-05  Score=65.90  Aligned_cols=88  Identities=13%  Similarity=0.099  Sum_probs=59.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCC-------CcccCCHH-HHhhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATVGGSPA-EVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~-~~~~~advvi~~~p~~~~~   70 (226)
                      |||+|+|+ |..|..+.+.|.++ .++|+.+.++.++-+.+....       .....+.+ +.++++|+||+++|+. ..
T Consensus        39 ~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-~s  117 (381)
T PLN02968         39 KRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-TT  117 (381)
T ss_pred             cEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-HH
Confidence            58999998 99999999999988 678888776544433322211       11112222 2247899999999884 45


Q ss_pred             HHHhhcccccccccCCCcEEEecCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .+++       +.+..|..|||+|+.
T Consensus       118 ~~i~-------~~~~~g~~VIDlSs~  136 (381)
T PLN02968        118 QEII-------KALPKDLKIVDLSAD  136 (381)
T ss_pred             HHHH-------HHHhCCCEEEEcCch
Confidence            5554       223468899999964

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.77  E-value=0.00014  Score=61.51  Aligned_cols=112  Identities=14%  Similarity=0.131  Sum_probs=72.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCc---hhHHHHHHC-C----Cc-ccCCH------HHHhhhCCeEEEecC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---SKCDELVAH-G----AT-VGGSP------AEVIKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~---~~~~~l~~~-g----~~-~~~s~------~~~~~~advvi~~~p   65 (226)
                      ++.|||+|..+++++..|+..|. +|+++||++   ++++.+.+. +    .. ...++      .+...++|+||.++|
T Consensus       126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp  205 (288)
T PRK12749        126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTK  205 (288)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCC
Confidence            68899999999999999999885 799999995   477777553 1    11 11222      234557899999998


Q ss_pred             CHHH--HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           66 DPAA--ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        66 ~~~~--~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      -.-.  .....   .--...++++.+++|+--. |..+ .+.+.++++|+..+|+
T Consensus       206 ~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~G  255 (288)
T PRK12749        206 VGMKPLENESL---VNDISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTIDG  255 (288)
T ss_pred             CCCCCCCCCCC---CCcHHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEECC
Confidence            5321  00101   0001235678889998643 3332 4566677888887665

>PRK08374 homoserine dehydrogenase; Provisional

Probab=97.76  E-value=0.00012  Score=63.31  Aligned_cols=121  Identities=20%  Similarity=0.247  Sum_probs=74.0

Q ss_pred             CeEEEEecChhHHHHHHHHHh--------CCC--eEE-EEcCCch----------hHHHHHHCCC---cc-------cCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLR--------NGF--KVT-VWNRTLS----------KCDELVAHGA---TV-------GGS   49 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~--------~G~--~V~-~~dr~~~----------~~~~l~~~g~---~~-------~~s   49 (226)
                      ++|+++|+|++|+.+++.|.+        .|.  +|. +.|++..          ++.+..+.+.   ..       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            479999999999999999877        464  333 4464422          1111121111   01       115


Q ss_pred             HHHHh--hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCcEE-ecCCCCChH
Q 027255           50 PAEVI--KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFL-EAPVSGSKQ  125 (226)
Q Consensus        50 ~~~~~--~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~~l-d~pv~g~~~  125 (226)
                      +.+++  ..+|+|+-+++. ....+.+      ...+..|..||-.++.. ....+++.+..++++..++ ++.+.++.|
T Consensus        83 ~~ell~~~~~DVvVd~t~~-~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP  155 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTND-KNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP  155 (336)
T ss_pred             HHHHHhcCCCCEEEECCCc-HHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence            66776  368999999865 4444544      25567888888877741 1244466666667787754 555776765


Q ss_pred             hhc
Q 027255          126 PAE  128 (226)
Q Consensus       126 ~a~  128 (226)
                      -..
T Consensus       156 ii~  158 (336)
T PRK08374        156 IIG  158 (336)
T ss_pred             chH
Confidence            443

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.75  E-value=0.00027  Score=54.45  Aligned_cols=107  Identities=20%  Similarity=0.123  Sum_probs=68.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC-CcccC-CH-HHHhhhCCeEEEecCCHHHHHHHhhc-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-ATVGG-SP-AEVIKKCTITIGMLADPAAALSVVFD-   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-~~~~~-s~-~~~~~~advvi~~~p~~~~~~~v~~~-   76 (226)
                      .+|.|||.|.+|...++.|.+.|++|++++  ++..+++.+.+ +.+.. .+ .+-++++|+||.++.+++ +...+.. 
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e-~N~~i~~~   90 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA-VNMMVKQA   90 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH-HHHHHHHH
Confidence            378999999999999999999999999996  44445554432 22211 11 123567899999987644 3322210 


Q ss_pred             -c-cc--------------cccccCCCcEEEecCC--CCHHHHHHHHHHHHh
Q 027255           77 -K-GG--------------VLEQICPGKGYIDMST--VDHETSIKISRAITS  110 (226)
Q Consensus        77 -~-~~--------------l~~~l~~g~ivvd~st--~~~~~~~~l~~~~~~  110 (226)
                       . ..              .-.....+.+.|-.||  .+|..++.+.+.+.+
T Consensus        91 a~~~~~vn~~d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~  142 (157)
T PRK06719         91 AHDFQWVNVVSDGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS  142 (157)
T ss_pred             HHHCCcEEECCCCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence             0 00              0111334566666666  489888888887765

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.74  E-value=5.9e-05  Score=54.14  Aligned_cols=83  Identities=12%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHhCCCeEEEEcCCchhHHHHH---HCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCC
Q 027255           11 MGKAISMNLLRNGFKVTVWNRTLSKCDELV---AHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPG   87 (226)
Q Consensus        11 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~---~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g   87 (226)
                      -+..|++.|.+.|.+|.+||+.-.......   ..+++.++++.++++++|+|+++++.++ .+.+-  .+++...+.++
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~--~~~~~~~~~~~   94 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELD--WEEIAKLMRKP   94 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCG--HHHHHHHSCSS
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccC--HHHHHHhcCCC
Confidence            456789999999999999998776654444   2578888999999999999999998754 33321  13455666788


Q ss_pred             cEEEecCCC
Q 027255           88 KGYIDMSTV   96 (226)
Q Consensus        88 ~ivvd~st~   96 (226)
                      .+|+|+-.+
T Consensus        95 ~~iiD~~~~  103 (106)
T PF03720_consen   95 PVIIDGRNI  103 (106)
T ss_dssp             EEEEESSST
T ss_pred             CEEEECccc
Confidence            999998653

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.74  E-value=0.0001  Score=55.17  Aligned_cols=114  Identities=18%  Similarity=0.269  Sum_probs=69.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhhh--CCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIKK--CTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~--advvi~~~p~~~~   69 (226)
                      .||.|+|+|.+|+.+|++|++.|. +++++|.+.=....+..+        |...+....+.+.+  .++=+.+.+..-.
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~   82 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID   82 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence            479999999999999999999997 699998765443333322        22222223333332  3444555544221


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                       .+.+   ..+.   ..-.+||+++.. +.....+.+.+.+++..|+++-+.|
T Consensus        83 -~~~~---~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g  127 (135)
T PF00899_consen   83 -EENI---EELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG  127 (135)
T ss_dssp             -HHHH---HHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred             -cccc---cccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence             1111   1122   234577777554 6677788899999999999887664

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.74  E-value=0.00011  Score=58.82  Aligned_cols=32  Identities=31%  Similarity=0.547  Sum_probs=30.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT   32 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~   32 (226)
                      .+|+|+|+|.||+.+|.+|++.|+ +++++|++
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            379999999999999999999998 69999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.73  E-value=0.00014  Score=61.01  Aligned_cols=111  Identities=18%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHH-HHHhhccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAA-LSVVFDKG   78 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~-~~v~~~~~   78 (226)
                      ++.|+|+|..+++++..|.+.|. +|+++||++++.+.+.+. +......+  ....+|+||-|+|-.-.- .+.-  +.
T Consensus       124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~--~~  199 (272)
T PRK12550        124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEAD--KL  199 (272)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccccCCCCccc--cC
Confidence            58899999999999999999996 599999999999988764 22211111  124589999999853210 0000  00


Q ss_pred             cc-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           79 GV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        79 ~l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+ ...+.++.+++|+.-... . -.+.+.++++|+..+++
T Consensus       200 pi~~~~l~~~~~v~D~vY~P~-~-T~ll~~A~~~G~~~i~G  238 (272)
T PRK12550        200 AFPEAEIDAASVVFDVVALPA-E-TPLIRYARARGKTVITG  238 (272)
T ss_pred             CCCHHHcCCCCEEEEeecCCc-c-CHHHHHHHHCcCeEeCC
Confidence            01 133667889999865432 2 23556667788877665

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.72  E-value=0.00032  Score=56.22  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=69.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|.+|+.+|++|+..|. +++++|.+.=....+..+        |...+....+.++  +.++-+...+..- .
T Consensus        23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i-~  101 (202)
T TIGR02356        23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERV-T  101 (202)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcC-C
Confidence            69999999999999999999997 799999875433333322        2222222222222  2344444443211 0


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      .+.+      .+.+..-.+||+++. ++.....+.+.+.+.++.++++-+.|
T Consensus       102 ~~~~------~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ip~i~~~~~g  146 (202)
T TIGR02356       102 AENL------ELLINNVDLVLDCTD-NFATRYLINDACVALGTPLISAAVVG  146 (202)
T ss_pred             HHHH------HHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            1111      122334467888754 46667778888899999999987665

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.72  E-value=0.00011  Score=61.93  Aligned_cols=73  Identities=22%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||.|. .|++++..|...|..|++++|..              .++.+.++++|+||.+++.+..    +   . 
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~----v---~-  217 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPEL----I---K-  217 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCc----C---C-
Confidence            3789999998 99999999999999999999832              2455666899999999975441    2   1 


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                       .+.+++|.+++|....
T Consensus       218 -~~~lk~gavViDvg~n  233 (283)
T PRK14192        218 -KDWIKQGAVVVDAGFH  233 (283)
T ss_pred             -HHHcCCCCEEEEEEEe
Confidence             1447799999998754

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.72  E-value=0.00028  Score=61.06  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=69.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCC----------cccCCHHHHhh--hCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA----------TVGGSPAEVIK--KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~----------~~~~s~~~~~~--~advvi~~~p~~~   68 (226)
                      +|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+..+-.          ..+....+.++  +.++-+......-
T Consensus        26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~  105 (339)
T PRK07688         26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDV  105 (339)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            79999999999999999999998 89999987644444433311          11111222222  2444444432211


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      ...+ +      .+.+..-.+|||++. .+.....+.+.+.+.++.++.+.+.|
T Consensus       106 ~~~~-~------~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~~iP~i~~~~~g  151 (339)
T PRK07688        106 TAEE-L------EELVTGVDLIIDATD-NFETRFIVNDAAQKYGIPWIYGACVG  151 (339)
T ss_pred             CHHH-H------HHHHcCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEeeee
Confidence            1111 1      122334568888765 45666678888888888888876554

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=97.72  E-value=0.00024  Score=58.07  Aligned_cols=86  Identities=20%  Similarity=0.253  Sum_probs=66.5

Q ss_pred             EEEEcCCchhHHHHHHC-CCcccCCHHHHh-hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC---CHHH
Q 027255           26 VTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV---DHET  100 (226)
Q Consensus        26 V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~---~~~~  100 (226)
                      +.+||+++++.+.+.+. |+..+.+.++++ .+.|+|++|+|+..+.+...       ..++.|+.++-.+..   +.+.
T Consensus         5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~   77 (229)
T TIGR03855         5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL   77 (229)
T ss_pred             EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence            56899999999888764 788889999986 57999999999976655544       556677666656664   6688


Q ss_pred             HHHHHHHHHhcCCcEEec
Q 027255          101 SIKISRAITSKGGHFLEA  118 (226)
Q Consensus       101 ~~~l~~~~~~~g~~~ld~  118 (226)
                      .+++.+.+++.|..+.=.
T Consensus        78 ~~~l~~aA~~~g~~l~i~   95 (229)
T TIGR03855        78 RERLREVARSSGRKVYIP   95 (229)
T ss_pred             HHHHHHHHHhcCCEEEEC
Confidence            999999999988765433

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.71  E-value=0.00029  Score=63.22  Aligned_cols=107  Identities=19%  Similarity=0.198  Sum_probs=76.2

Q ss_pred             eEEEEec----ChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGL----GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~----G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      +|+|||.    |.+|..+.++|.+.||  +|+.+|+..+.     -.|.....+++++-+..|++++++|. +.+.+++ 
T Consensus         9 siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l-   81 (447)
T TIGR02717         9 SVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVV-   81 (447)
T ss_pred             EEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCH-HHHHHHH-
Confidence            6999999    8899999999999998  57666665432     24788899999998889999999987 5666666 


Q ss_pred             cccccccccCCCcEEEecCCCC------HHHHHHHHHHHHhcCCcEEec
Q 027255           76 DKGGVLEQICPGKGYIDMSTVD------HETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~------~~~~~~l~~~~~~~g~~~ld~  118 (226)
                        +++.+. .-..++|-.+-..      ....+++.+.+++.|++++.-
T Consensus        82 --~e~~~~-gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP  127 (447)
T TIGR02717        82 --EECGEK-GVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGP  127 (447)
T ss_pred             --HHHHhc-CCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence              444332 2234444332211      233567888888888887654

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.70  E-value=0.00011  Score=62.86  Aligned_cols=65  Identities=26%  Similarity=0.361  Sum_probs=51.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      |||.|+|. |.+|+.+++.|.++||+|++..|++++...+...++++       ..++.++++++|+||.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            89999995 99999999999999999999999987765555445433       2245567788999998754

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.70  E-value=0.00016  Score=61.46  Aligned_cols=63  Identities=17%  Similarity=0.292  Sum_probs=48.8

Q ss_pred             EEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHC---------CCcc--cCCHHHHhhhCCeEEEecCC
Q 027255            3 VGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH---------GATV--GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~---------g~~~--~~s~~~~~~~advvi~~~p~   66 (226)
                      |+|||+|.+|..+|..|+..|  +++.++|+++++++.....         ..+.  ..+ .+.+++||+||++...
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~   76 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence            689999999999999999988  6899999999876654331         0122  233 4678899999999864

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.67  E-value=0.00034  Score=54.74  Aligned_cols=112  Identities=14%  Similarity=0.148  Sum_probs=64.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-------CCcccCCHHHHhh--hCCeEEEecCCHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-------GATVGGSPAEVIK--KCTITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~--~advvi~~~p~~~~~~   71 (226)
                      ||.|||+|.+|+.++++|++.|. +++++|.+.=....+.++       |...+....+.++  +.++=+.+.+..-.-+
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~   80 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN   80 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence            68999999999999999999998 599999876222222221       2111111122221  2344443332211001


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc-CCcEEecCCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK-GGHFLEAPVS  121 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~-g~~~ld~pv~  121 (226)
                      .       +.+.++.-.+||++ +-.+.....+.+.+.++ ++.++.+-+.
T Consensus        81 ~-------~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~~~ip~i~~~~~  123 (174)
T cd01487          81 N-------LEGLFGDCDIVVEA-FDNAETKAMLAESLLGNKNKPVVCASGM  123 (174)
T ss_pred             h-------HHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHCCCCEEEEehh
Confidence            1       11223344688888 44566666677777776 8888776443

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.66  E-value=0.00011  Score=63.44  Aligned_cols=89  Identities=19%  Similarity=0.191  Sum_probs=57.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeE---EEEcCCchhHHHHHHCC--CcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKV---TVWNRTLSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V---~~~dr~~~~~~~l~~~g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      |||+|||. |..|..+.+.|.+++|++   ....+..+.-+.+.-.+  +...+...+.++++|+||.|+|.. ..+++.
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~   80 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYA   80 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHH
Confidence            68999997 999999999999988863   55544433333332122  222222223447899999999885 444444


Q ss_pred             hcccccccccCCCcEEEecCCC
Q 027255           75 FDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st~   96 (226)
                         .   ..+..|.+|||.|+.
T Consensus        81 ---~---~~~~~G~~VIDlS~~   96 (334)
T PRK14874         81 ---P---KAAAAGAVVIDNSSA   96 (334)
T ss_pred             ---H---HHHhCCCEEEECCch
Confidence               2   233568899999863

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.66  E-value=0.00012  Score=63.36  Aligned_cols=88  Identities=16%  Similarity=0.166  Sum_probs=55.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCe---EEEE--cCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVW--NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~---V~~~--dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      +||+|||. |..|..+.+.|.+.+|+   +...  .|+..+.-........+.....+.++++|+||+|+|+.. ..++.
T Consensus         8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~-s~~~~   86 (344)
T PLN02383          8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI-SKKFG   86 (344)
T ss_pred             CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH-HHHHH
Confidence            58999997 99999999999998874   3222  344333222211112222222245578999999999954 44444


Q ss_pred             hcccccccccCCCcEEEecCC
Q 027255           75 FDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st   95 (226)
                         .   .....|..|||.|.
T Consensus        87 ---~---~~~~~g~~VIDlS~  101 (344)
T PLN02383         87 ---P---IAVDKGAVVVDNSS  101 (344)
T ss_pred             ---H---HHHhCCCEEEECCc
Confidence               2   22347889999995

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.64  E-value=0.00088  Score=53.86  Aligned_cols=110  Identities=16%  Similarity=0.148  Sum_probs=72.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHCC-CcccC--CHHHHhhhCCeEEEecCCHHHHHHHhh-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG--SPAEVIKKCTITIGMLADPAAALSVVF-   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~--s~~~~~~~advvi~~~p~~~~~~~v~~-   75 (226)
                      .+|.|||.|.+|..-++.|++.|.+|++++.+.. ..+.+.+.| +....  -..+.++++++||.++.+++.-..+.. 
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i~~~   89 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRVAHA   89 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHHHHH
Confidence            3789999999999999999999999999987764 445555553 33211  113456789999998866532222221 


Q ss_pred             -----------ccccc----c-cccCCCcEEEecCC--CCHHHHHHHHHHHHh
Q 027255           76 -----------DKGGV----L-EQICPGKGYIDMST--VDHETSIKISRAITS  110 (226)
Q Consensus        76 -----------~~~~l----~-~~l~~g~ivvd~st--~~~~~~~~l~~~~~~  110 (226)
                                 ++.+.    . .....|.+.|-.||  .+|..++.+.+.+.+
T Consensus        90 a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~  142 (205)
T TIGR01470        90 ARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET  142 (205)
T ss_pred             HHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence                       00011    1 12345667766666  489999888888865

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.64  E-value=0.00077  Score=60.12  Aligned_cols=125  Identities=18%  Similarity=0.130  Sum_probs=80.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh----HHHHHHCCCcccC--CHHHHhhhCCeEEEec---CCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK----CDELVAHGATVGG--SPAEVIKKCTITIGML---ADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~----~~~l~~~g~~~~~--s~~~~~~~advvi~~~---p~~~~~~   71 (226)
                      |||.|+|+|.-|.++++.|.+.|++|+++|.++..    ...+...++.+..  ...+...++|+|+..-   |+...++
T Consensus         8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~   87 (448)
T COG0771           8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVE   87 (448)
T ss_pred             CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHH
Confidence            68999999999999999999999999999966655    2233345554422  1225667889888752   2333444


Q ss_pred             HHh-hc-----cccccccc-CCCcEE-EecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           72 SVV-FD-----KGGVLEQI-CPGKGY-IDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        72 ~v~-~~-----~~~l~~~l-~~g~iv-vd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ... .|     +-++.-.. .+..+| |.-|+....++.-++..+++.|....-+.-.|.|.
T Consensus        88 ~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~  149 (448)
T COG0771          88 AAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA  149 (448)
T ss_pred             HHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH
Confidence            432 11     11222222 123344 44455677888888999999898776666666654

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.62  E-value=0.00016  Score=61.93  Aligned_cols=63  Identities=14%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHH----HC-------CCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH-------GATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~----~~-------g~~~~~s~~~~~~~advvi~~~   64 (226)
                      +||+|||+|.+|..+|..|+..|.  ++.++|+++++++...    ..       .+..+.++++ +++||+||++.
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvita   79 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTA   79 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECC
Confidence            589999999999999999998874  7999999887654322    11       1222345555 78999999965

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.61  E-value=0.00022  Score=59.87  Aligned_cols=74  Identities=19%  Similarity=0.243  Sum_probs=58.9

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||-| ..|.++|..|.++|..|++++...              .++.+.+++||+|++++..+..+..       
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~~-------  216 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIKA-------  216 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCCH-------
Confidence            478999999 999999999999999999986432              2346788999999999987653321       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.++||.+...
T Consensus       217 --~~vk~GavVIDvGi~~  232 (285)
T PRK14191        217 --SMVKKGAVVVDIGINR  232 (285)
T ss_pred             --HHcCCCcEEEEeeccc
Confidence              3457999999988643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.61  E-value=0.00068  Score=60.71  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--CCcc-c---CCHHHH----hhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATV-G---GSPAEV----IKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--g~~~-~---~s~~~~----~~~advvi~~~p~~~   68 (226)
                      ++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.  +... .   .+.+.+    ++++|.|+++++++.
T Consensus       232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~  309 (453)
T PRK09496        232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE  309 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence            468999999999999999999999999999999999888775  3322 1   222222    357899999888753

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.61  E-value=0.00046  Score=52.08  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=31.0

Q ss_pred             CHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC
Q 027255           49 SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        49 s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~   97 (226)
                      ++++.+++||+|+++++.+..    +   +  .+.+++|.+++|.+...
T Consensus        64 ~l~~~v~~ADIVvsAtg~~~~----i---~--~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          64 QLQSKVHDADVVVVGSPKPEK----V---P--TEWIKPGATVINCSPTK  103 (140)
T ss_pred             CHHHHHhhCCEEEEecCCCCc----c---C--HHHcCCCCEEEEcCCCc
Confidence            678899999999999987532    2   1  24578999999988755

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.60  E-value=0.00015  Score=64.52  Aligned_cols=114  Identities=16%  Similarity=0.111  Sum_probs=67.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCH---HHHHHHhh-c
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP---AAALSVVF-D   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~---~~~~~v~~-~   76 (226)
                      .+|.|||+|.+|.++|+.|.+.|++|+++|+++..........-..........+++|+||.+.+.+   ..+++... |
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~g   83 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIASH   83 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHCC
Confidence            3799999999999999999999999999998876433211000011223444456789888876432   23333321 1


Q ss_pred             -----cccc-ccc--cCCCcEE-EecCCCCHHHHHHHHHHHHhcCCc
Q 027255           77 -----KGGV-LEQ--ICPGKGY-IDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        77 -----~~~l-~~~--l~~g~iv-vd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                           +..+ ...  ..+..+| |--|.....++.-+++.+...|..
T Consensus        84 ~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~  130 (418)
T PRK00683         84 IPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIP  130 (418)
T ss_pred             CcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCC
Confidence                 0011 111  1122344 444446777777788888877654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.59  E-value=0.0018  Score=58.33  Aligned_cols=115  Identities=16%  Similarity=0.195  Sum_probs=71.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-----hHHHHHHCCCcccC--CHHHHhhhCCeEEEec---CCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGG--SPAEVIKKCTITIGML---ADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~--s~~~~~~~advvi~~~---p~~~~~   70 (226)
                      ++|+|+|+|.-|.++|+.|.+.|++|+++|+++.     ..+++.+.|+....  ...+.+.++|+||..-   |+.+.+
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~p~~   94 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDSPEL   94 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCchHH
Confidence            3799999999999999999999999999998753     22456667876532  2234457899888763   122333


Q ss_pred             HHHhh-c-----ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255           71 LSVVF-D-----KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        71 ~~v~~-~-----~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~  115 (226)
                      ..... +     +-+++....+.++|--+.| ....+..-++..+...|...
T Consensus        95 ~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~  146 (458)
T PRK01710         95 VKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT  146 (458)
T ss_pred             HHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence            32221 1     0011111223345555555 56666777777777777654

>PRK15076 alpha-galactosidase; Provisional

Probab=97.58  E-value=0.0001  Score=65.70  Aligned_cols=66  Identities=14%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             CeEEEEecChhHHHHHH--HHH----hCCCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISM--NLL----RNGFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~--~l~----~~G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~~~~~~advvi~   62 (226)
                      |||+|||.|.||...+.  .++    -.+.+|.++|+++++.+....        .+    +..+++..+++++||+||+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            68999999999966554  443    245789999999988763211        12    3346677899999999999


Q ss_pred             ecCC
Q 027255           63 MLAD   66 (226)
Q Consensus        63 ~~p~   66 (226)
                      +.-.
T Consensus        82 ti~v   85 (431)
T PRK15076         82 AIQV   85 (431)
T ss_pred             eeee
Confidence            8754

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.58  E-value=0.00048  Score=59.60  Aligned_cols=114  Identities=17%  Similarity=0.207  Sum_probs=65.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC----------CCcccCCHHHHhh--hCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIK--KCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~----------g~~~~~s~~~~~~--~advvi~~~p~~   67 (226)
                      .+|.|||+|.+|+.+|.+|++.|+ +++++|++.-....+..+          |...+....+.++  +.++-+...+..
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~  104 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTD  104 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            379999999999999999999998 799999875322222221          1111111112221  245544444321


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      .. .+.+   +.   .+..-.+|||++. .+.....+.+.+.+.++.++.+.+.|
T Consensus       105 ~~-~~~~---~~---~~~~~DlVid~~D-~~~~r~~in~~~~~~~ip~i~~~~~g  151 (338)
T PRK12475        105 VT-VEEL---EE---LVKEVDLIIDATD-NFDTRLLINDLSQKYNIPWIYGGCVG  151 (338)
T ss_pred             CC-HHHH---HH---HhcCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            11 1111   11   1223467777764 45555667777777788777775554

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.58  E-value=0.00031  Score=59.00  Aligned_cols=73  Identities=14%  Similarity=0.114  Sum_probs=58.7

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      +++.|||-+. .|.++|..|.+.|..|++++...              .++.+.++++|+||.++..+..+..       
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~~i~~-------  223 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKHLIKA-------  223 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCccccCH-------
Confidence            4789999998 99999999999999999998432              3567788999999998876543211       


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                        ..+++|.+|||.++.
T Consensus       224 --~~vk~gavVIDvGin  238 (287)
T PRK14176        224 --DMVKEGAVIFDVGIT  238 (287)
T ss_pred             --HHcCCCcEEEEeccc
Confidence              356799999998875

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.58  E-value=0.00037  Score=59.85  Aligned_cols=44  Identities=23%  Similarity=0.185  Sum_probs=36.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|+|+|+|..|..-.+.....|.+|++++|++++.+.+.+.|+.
T Consensus       169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd  212 (339)
T COG1064         169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD  212 (339)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc
Confidence            69999999999855555555899999999999999888877653

>PRK08328 hypothetical protein; Provisional

Probab=97.58  E-value=0.00079  Score=55.14  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=72.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcc---c-C-CHHHHh----h--hCCeEEEecCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATV---G-G-SPAEVI----K--KCTITIGMLADPAA   69 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~---~-~-s~~~~~----~--~advvi~~~p~~~~   69 (226)
                      +|.|||+|..|+.++.+|++.|. +++++|.+.-....+..+-...   . . .-.+++    +  +.++.+.+.+.. .
T Consensus        29 ~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~-~  107 (231)
T PRK08328         29 KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGR-L  107 (231)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEecc-C
Confidence            69999999999999999999996 6889988766555554431100   0 0 111121    1  467776665431 1


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      .++-+      .+.++.-.+|||+.-. +..-..+.+.+.+.++.++.+.+.|.
T Consensus       108 ~~~~~------~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g~  154 (231)
T PRK08328        108 SEENI------DEVLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEGT  154 (231)
T ss_pred             CHHHH------HHHHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeeccC
Confidence            11111      1223345788888765 55666777788888999998877653

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.58  E-value=0.00049  Score=61.95  Aligned_cols=117  Identities=15%  Similarity=0.054  Sum_probs=72.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEec--CCH-----HHHHHHh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML--ADP-----AAALSVV   74 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~--p~~-----~~~~~v~   74 (226)
                      +|.|||+|..|.+.|+.|.+.|++|.++|+.+.....+...|+.......+-+.++|+||..-  |..     ..+....
T Consensus        11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v~~a~   90 (460)
T PRK01390         11 TVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVVDLAR   90 (460)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHHHHHH
Confidence            699999999999999999999999999998765555566667765432223356789887532  211     1333322


Q ss_pred             hc------cccccccc-----CCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEec
Q 027255           75 FD------KGGVLEQI-----CPGKGYIDMST-VDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        75 ~~------~~~l~~~l-----~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ..      ..++....     .+..+|--+.| ....++.-++..+...|..+.-+
T Consensus        91 ~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~  146 (460)
T PRK01390         91 AAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMG  146 (460)
T ss_pred             HcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEc
Confidence            11      00111111     12345544544 56667777777887777655433

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.56  E-value=0.0013  Score=59.75  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC--CHHHHhhhCCeEEEec--CC-HHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--SPAEVIKKCTITIGML--AD-PAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--s~~~~~~~advvi~~~--p~-~~~~~~v~~   75 (226)
                      .+|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.|+....  ...+.++++|+||.+-  |. .+.++..-.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~a~~   92 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAAAAA   92 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHHHHH
Confidence            379999999999999999999999999999887776666666776532  2345567899888764  22 122222210


Q ss_pred             ------ccccccccc-------CCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           76 ------DKGGVLEQI-------CPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        76 ------~~~~l~~~l-------~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                            ++-++.-..       .+..+|--+.| ....++.-+++.+...|....-..-.|.|
T Consensus        93 ~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~GniG~p  155 (488)
T PRK03369         93 AGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSP  155 (488)
T ss_pred             CCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCCchH
Confidence                  111111111       12245544444 56667777788888777543322234444

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.53  E-value=0.00071  Score=55.26  Aligned_cols=113  Identities=19%  Similarity=0.229  Sum_probs=69.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|..|+.+|++|++.|. +++++|.+.=....+..+        |-..+....+.++  +.++-+...+..-..
T Consensus        23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~  102 (228)
T cd00757          23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDA  102 (228)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCH
Confidence            79999999999999999999996 688998765443333322        2222222222222  234444444321101


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      ++ +      .+.+..-.+||++.. .+.....+.+.+.++++.++++.+.|
T Consensus       103 ~~-~------~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~g  146 (228)
T cd00757         103 EN-A------EELIAGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVLG  146 (228)
T ss_pred             HH-H------HHHHhCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            11 1      122223457777754 56677788888899999999987665

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.53  E-value=0.0026  Score=56.92  Aligned_cols=114  Identities=19%  Similarity=0.147  Sum_probs=70.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch----hHHHHHHCCCccc--CCHHHHhhh-CCeEEEec--C-CHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS----KCDELVAHGATVG--GSPAEVIKK-CTITIGML--A-DPAAAL   71 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~----~~~~l~~~g~~~~--~s~~~~~~~-advvi~~~--p-~~~~~~   71 (226)
                      +|.|+|.|.+|.++|+.|++.|++|.++|++..    ..+.+.+.|+...  ....+.... .|+||...  | +...++
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~~   86 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMVE   86 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHHH
Confidence            689999999999999999999999999998653    2344666676553  234454444 88877754  2 223333


Q ss_pred             HHhh------cccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255           72 SVVF------DKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        72 ~v~~------~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~  115 (226)
                      ....      ...++...+.+..+|.-+.| ....++.-++..+...|...
T Consensus        87 ~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~  137 (447)
T PRK02472         87 KALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA  137 (447)
T ss_pred             HHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence            3221      11112222223344544444 56677777788887777544

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.51  E-value=0.00078  Score=55.51  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=73.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|+|+|.+|+.+|.+|++.|. +++++|.+.-....+..+        |-..+....+.++  +.++-+...+..- .
T Consensus        26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i-~  104 (240)
T TIGR02355        26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKL-D  104 (240)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccC-C
Confidence            69999999999999999999996 688888775554444432        2222222223222  3455555553211 1


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      .+.      +.+.+..-.+|||++.. +.....+.+.+.+.++.++.+.+.|.
T Consensus       105 ~~~------~~~~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g~  150 (240)
T TIGR02355       105 DAE------LAALIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIRM  150 (240)
T ss_pred             HHH------HHHHhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEeccc
Confidence            111      11223345688887754 66777788899999999999877764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05086 malate dehydrogenase; Provisional

Probab=97.50  E-value=0.0005  Score=58.83  Aligned_cols=65  Identities=18%  Similarity=0.338  Sum_probs=46.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh---CCCeEEEEcCCchhH---HHHHHCC--Ccc----cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLR---NGFKVTVWNRTLSKC---DELVAHG--ATV----GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~---~G~~V~~~dr~~~~~---~~l~~~g--~~~----~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+ |.+|..++..|..   .++++.++|+++...   -.+...+  ..+    ..++.+.++++|+||+|.-
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG   78 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG   78 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            89999999 9999999988854   346899999986531   1233212  122    2455678889999999974

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.50  E-value=0.00014  Score=61.21  Aligned_cols=90  Identities=23%  Similarity=0.368  Sum_probs=67.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCc--c----cCCHHHHhhhCCeEEEec--CCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT--V----GGSPAEVIKKCTITIGML--ADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~--~----~~s~~~~~~~advvi~~~--p~~~~~~~   72 (226)
                      +|.|||-|..|+.-|+...-.|.+|++.|+|.+++..+... +.+  .    ...+++.+.++|+||-++  |...+ ..
T Consensus       170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-Pk  248 (371)
T COG0686         170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-PK  248 (371)
T ss_pred             cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC-ce
Confidence            68999999999999999999999999999999988777654 322  1    234667788999999876  33221 12


Q ss_pred             HhhcccccccccCCCcEEEecC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      +.+  ++....++||.+|||..
T Consensus       249 Lvt--~e~vk~MkpGsVivDVA  268 (371)
T COG0686         249 LVT--REMVKQMKPGSVIVDVA  268 (371)
T ss_pred             ehh--HHHHHhcCCCcEEEEEE
Confidence            221  44557899999999975

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.49  E-value=0.0025  Score=57.67  Aligned_cols=115  Identities=14%  Similarity=0.106  Sum_probs=72.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-HHCCCcccC--CHHHHhhhCCeEEEec---CCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-VAHGATVGG--SPAEVIKKCTITIGML---ADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-~~~g~~~~~--s~~~~~~~advvi~~~---p~~~~~~~v~   74 (226)
                      ++|.|+|+|..|.++|+.|.+.|++|+++|+++....++ ...|+....  ...+-+.++|+||..-   |+...+....
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~~~a~   95 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLLVDAQ   95 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHHHHHH
Confidence            369999999999999999999999999999987665543 344776543  2334456789888762   2323333322


Q ss_pred             h-c-----ccccccc------c-CCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255           75 F-D-----KGGVLEQ------I-CPGKGYIDMST-VDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        75 ~-~-----~~~l~~~------l-~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~  115 (226)
                      . |     .-++.-.      . .+.++|--+.| ....++.-+++.+...|...
T Consensus        96 ~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~  150 (473)
T PRK00141         96 SQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA  150 (473)
T ss_pred             HCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence            1 1     0011100      1 13345555555 56667777778887777654

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.48  E-value=0.00032  Score=60.31  Aligned_cols=58  Identities=12%  Similarity=0.169  Sum_probs=41.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~   63 (226)
                      .+|.|||+|.||...+++|.++|. +|++.||+.... .+....    ....+....+|+||+|
T Consensus       175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~  233 (338)
T PRK00676        175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFG  233 (338)
T ss_pred             CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEc
Confidence            378999999999999999999995 699999998531 111110    0111334578999986

>PRK08223 hypothetical protein; Validated

Probab=97.48  E-value=0.00089  Score=56.37  Aligned_cols=123  Identities=18%  Similarity=0.196  Sum_probs=75.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|..|+.++.+|++.|. +++++|.+.=....+..+        |-..+....+.+.  +.++=+...+..- .
T Consensus        29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l-~  107 (287)
T PRK08223         29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGI-G  107 (287)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEeccc-C
Confidence            69999999999999999999996 688888765444444333        2222222333332  2344344443211 0


Q ss_pred             HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEe
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS  136 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~  136 (226)
                      .      +.+.+.+..-.+|||++.. ....-..+.+.+.+.++.++.+.+.|..     |.+.++.
T Consensus       108 ~------~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~-----gqv~v~~  163 (287)
T PRK08223        108 K------ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMG-----TALLVFD  163 (287)
T ss_pred             c------cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCe-----EEEEEEc
Confidence            1      1111223344688888865 3466777888889999999998777643     4555554

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.47  E-value=0.00033  Score=57.01  Aligned_cols=64  Identities=27%  Similarity=0.348  Sum_probs=52.5

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCch--hHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecCC
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~--~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p~   66 (226)
                      |.|+|. |..|+.+++.|.+.+|+|.+.-|++.  ..+.+...|+++       ..++.++++++|.||++++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            689996 99999999999999999999988864  466777788654       23455678899999999983

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.45  E-value=0.0012  Score=52.72  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~   69 (226)
                      .+|.|||+|.+|..++++|+..|. +++++|.+.=....+..+        |-..+....+.++  +.++-+.+.+..  
T Consensus        22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~--   99 (197)
T cd01492          22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD--   99 (197)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC--
Confidence            379999999999999999999997 599998764333333221        2222222222222  356655544321  


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      +.+..   +   +.+..-.+||+++. .+.....+.+.+.++++.++.+-+.|.
T Consensus       100 ~~~~~---~---~~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G~  146 (197)
T cd01492         100 ISEKP---E---EFFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHGL  146 (197)
T ss_pred             ccccH---H---HHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            11111   1   11223357777644 577788899999999999888877663

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.44  E-value=0.0015  Score=52.23  Aligned_cols=116  Identities=17%  Similarity=0.268  Sum_probs=69.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC----------CCcccCCHHHHhh--hCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIK--KCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~----------g~~~~~s~~~~~~--~advvi~~~p~~   67 (226)
                      .+|.|||+|.+|..++++|+..|. +++++|.+.-....+..+          |...+....+.++  +.++-+......
T Consensus        20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~   99 (198)
T cd01485          20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED   99 (198)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence            379999999999999999999996 599998764332233221          2211212222222  345555444321


Q ss_pred             HH-HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           68 AA-ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        68 ~~-~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      .. ..+-.   .   ..+.+-.+||++. ..+.....+.+.+.++++.++.+-+.|.
T Consensus       100 ~~~~~~~~---~---~~~~~~dvVi~~~-d~~~~~~~ln~~c~~~~ip~i~~~~~G~  149 (198)
T cd01485         100 SLSNDSNI---E---EYLQKFTLVIATE-ENYERTAKVNDVCRKHHIPFISCATYGL  149 (198)
T ss_pred             cccchhhH---H---HHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence            10 01111   1   1223345777774 4477778889999999998888866553

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.44  E-value=0.00046  Score=57.79  Aligned_cols=74  Identities=15%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      .+|.|||-+ ..|+++|..|...|..|++++++.              .++.+.+++||+||.+++.+..+..       
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~~-------  211 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFITP-------  211 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccCH-------
Confidence            368999998 999999999999999999988653              3577888999999999976532221       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        ..+++|.+|||.+...
T Consensus       212 --~~vk~GavVIDVgi~~  227 (279)
T PRK14178        212 --DMVKPGATVIDVGINQ  227 (279)
T ss_pred             --HHcCCCcEEEEeeccc
Confidence              2358999999988653

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.44  E-value=0.00064  Score=56.96  Aligned_cols=74  Identities=22%  Similarity=0.240  Sum_probs=59.2

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||-+ ..|.++|..|.++|..|++++...              .++.+.+++||+|++++..+..+..       
T Consensus       158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i~~-------  216 (281)
T PRK14183        158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNLITE-------  216 (281)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccccCH-------
Confidence            378999998 899999999999999999886432              3456788999999999988654322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.++||.++..
T Consensus       217 --~~vk~gavvIDvGin~  232 (281)
T PRK14183        217 --DMVKEGAIVIDIGINR  232 (281)
T ss_pred             --HHcCCCcEEEEeeccc
Confidence              3467999999998654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.43  E-value=0.0015  Score=53.99  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=70.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|..|+.++++|+..|. +++++|.+.=....+..+        |...+....+.+.  +.++-+...+..-. 
T Consensus        34 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~-  112 (245)
T PRK05690         34 RVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD-  112 (245)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC-
Confidence            79999999999999999999996 688998765444444332        2222222222222  24554444432110 


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      .+-      +.+.+..-.+||+++. .+.....+.+.+.++++.++.+.+.|.
T Consensus       113 ~~~------~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~~g~  158 (245)
T PRK05690        113 DDE------LAALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAAIRM  158 (245)
T ss_pred             HHH------HHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeeeccC
Confidence            111      1122334568888865 556666788888889999998866553

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.42  E-value=0.0014  Score=58.76  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc-hhH----HHHHHCCCcc--cCCHHHHhhhCCeEEEecCCH---HHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKC----DELVAHGATV--GGSPAEVIKKCTITIGMLADP---AAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~-~~~----~~l~~~g~~~--~~s~~~~~~~advvi~~~p~~---~~~   70 (226)
                      ++|.|+|.|.+|.++|+.|++.|++|+++|++. +..    +++.+.|+.+  .....+....+|+||.+.-..   +.+
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCCHHH
Confidence            479999999999999999999999999999975 333    3444446543  223345566799999875321   111


Q ss_pred             HHHhh-cc-----cccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255           71 LSVVF-DK-----GGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGG  113 (226)
Q Consensus        71 ~~v~~-~~-----~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~  113 (226)
                      ...-. |-     -+......+..+|.-+.| ....+..-++..+...|.
T Consensus        86 ~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~  135 (450)
T PRK14106         86 VQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGR  135 (450)
T ss_pred             HHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence            11110 00     001111112445544545 566666677777776653

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.41  E-value=0.0012  Score=53.47  Aligned_cols=111  Identities=16%  Similarity=0.191  Sum_probs=63.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-------CCcccCCHHHHhh--hCCeEEEecCCHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-------GATVGGSPAEVIK--KCTITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~--~advvi~~~p~~~~~~   71 (226)
                      +|.|||+|.+|+.+|.+|++.|. +++++|.+.=....+..+       |-..+....+-++  +.++-+...+.. ...
T Consensus        30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~-i~~  108 (212)
T PRK08644         30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK-IDE  108 (212)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee-cCH
Confidence            69999999999999999999997 499999874322222222       2111111122221  234444333221 001


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc-CCcEEecCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK-GGHFLEAPV  120 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~-g~~~ld~pv  120 (226)
                      +.+   .   +.+..-.+||+++ -.+.....+.+.+.+. +..++.+..
T Consensus       109 ~~~---~---~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~~~  151 (212)
T PRK08644        109 DNI---E---ELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAASG  151 (212)
T ss_pred             HHH---H---HHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEeeh
Confidence            111   1   1223346888884 4555566777888887 888877643

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.40  E-value=0.0006  Score=58.32  Aligned_cols=89  Identities=19%  Similarity=0.268  Sum_probs=57.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-----CC---cc-cCCHHHH-hhhCCeEEEecCCHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-----GA---TV-GGSPAEV-IKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-----g~---~~-~~s~~~~-~~~advvi~~~p~~~   68 (226)
                      +||+|||. |.-|..+.+.|..+- .++..+..+..+-+.+.+.     |.   .. ..+++++ .++||+||+|+|+..
T Consensus         3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~   82 (349)
T COG0002           3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV   82 (349)
T ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence            58999997 999999999998874 4666665443222233322     21   11 1233343 345899999999976


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      ..+-+-       ..+.+|..|||+|+-
T Consensus        83 s~~~v~-------~l~~~g~~VIDLSad  103 (349)
T COG0002          83 SAELVP-------ELLEAGCKVIDLSAD  103 (349)
T ss_pred             HHHHHH-------HHHhCCCeEEECCcc
Confidence            554442       334467779999974

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=97.39  E-value=0.00032  Score=61.68  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=38.9

Q ss_pred             CeEEEEecChhHHHH-HHHHHhCCCeEEEEcCCchhHHHHHHCC
Q 027255            1 MEVGFLGLGIMGKAI-SMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (226)
Q Consensus         1 m~IgvIG~G~mG~~~-A~~l~~~G~~V~~~dr~~~~~~~l~~~g   43 (226)
                      |||.++|+|+||++. ...|.+.|++|++.|++++.++.+.++|
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qg   44 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRK   44 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCC
Confidence            899999999999954 7888889999999999999999998876

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=97.39  E-value=0.0016  Score=55.06  Aligned_cols=113  Identities=14%  Similarity=0.113  Sum_probs=77.6

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~~~~   77 (226)
                      ||.|.|. |.+|..+.++|.+.|++ .+|-.||.. .+++  .|.....+.+++-+.  .|+.++++|. +.+.+++   
T Consensus        10 ~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l---   82 (291)
T PRK05678         10 KVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI---   82 (291)
T ss_pred             eEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH---
Confidence            6888997 88999999999999987 554444431 1111  488889999999987  8999999987 5666666   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      ++..+. .-...+|-++-...+..+++.+.++++|++++---..|
T Consensus        83 ~e~~~~-gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G  126 (291)
T PRK05678         83 LEAIDA-GIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG  126 (291)
T ss_pred             HHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence            333331 12234444444455555688999999998877543333

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.38  E-value=0.00072  Score=58.17  Aligned_cols=67  Identities=19%  Similarity=0.301  Sum_probs=50.0

Q ss_pred             EEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHH-C------------------CCcccCCHHHHhhhCCeEE
Q 027255            3 VGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-H------------------GATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~-~------------------g~~~~~s~~~~~~~advvi   61 (226)
                      |||+|+|.+|+.+++.+... +.+|. +.|.+++....+.. .                  ++.+..+++++.+++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            68999999999999998754 46655 56777775544443 1                  2344567999999999999


Q ss_pred             EecCCHHH
Q 027255           62 GMLADPAA   69 (226)
Q Consensus        62 ~~~p~~~~   69 (226)
                      .|+|....
T Consensus        81 e~Tp~~~~   88 (333)
T TIGR01546        81 DATPGGIG   88 (333)
T ss_pred             ECCCCCCC
Confidence            99987543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.38  E-value=0.001  Score=61.02  Aligned_cols=112  Identities=16%  Similarity=0.145  Sum_probs=70.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcc--cCCHHHH-hhhCCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV--GGSPAEV-IKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~s~~~~-~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      ++.|+|.|.+|++++..|++.|++|+++||+.++.+.+.+. +...  ..+..+. ...+|+|+.++|-.-. ...-  .
T Consensus       381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~-~~~~--~  457 (529)
T PLN02520        381 LFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQ-PNVD--E  457 (529)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCC-CCCC--C
Confidence            57899999999999999999999999999999998888653 2211  1122221 2346778777764321 0000  0


Q ss_pred             ccc-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           78 GGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        78 ~~l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ..+ ...+++..+++|+.-....  -.+.+.++++|+..+++
T Consensus       458 ~pl~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~G  497 (529)
T PLN02520        458 TPISKHALKHYSLVFDAVYTPKI--TRLLREAEESGAIIVSG  497 (529)
T ss_pred             CcccHhhCCCCCEEEEeccCCCc--CHHHHHHHHCCCeEeCc
Confidence            001 1235567889998654322  23455566778776654

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.35  E-value=0.023  Score=49.77  Aligned_cols=67  Identities=18%  Similarity=0.206  Sum_probs=51.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-----C--------------------CcccCCHHHHhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G--------------------ATVGGSPAEVIK   55 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-----g--------------------~~~~~s~~~~~~   55 (226)
                      +|-|+|.|..+-.+|..+.+.+. +|-+.+|...+.+++.+.     +                    -....+.+++..
T Consensus         3 ~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g   82 (429)
T PF10100_consen    3 NVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEG   82 (429)
T ss_pred             ceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcc
Confidence            68999999999999999998775 699999987777665431     1                    123455666666


Q ss_pred             hCCeEEEecCCHH
Q 027255           56 KCTITIGMLADPA   68 (226)
Q Consensus        56 ~advvi~~~p~~~   68 (226)
                      +=|.+|+|+|.++
T Consensus        83 ~WdtlILavtaDA   95 (429)
T PF10100_consen   83 EWDTLILAVTADA   95 (429)
T ss_pred             cccEEEEEechHH
Confidence            7799999998854

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.35  E-value=0.0024  Score=57.25  Aligned_cols=124  Identities=14%  Similarity=0.084  Sum_probs=77.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch--hHHHHHH--CCCcccC--CHHHHhhhCCeEEEec--C-CHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVA--HGATVGG--SPAEVIKKCTITIGML--A-DPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~--~~~~l~~--~g~~~~~--s~~~~~~~advvi~~~--p-~~~~~~~   72 (226)
                      .|.|||+|..|.++|+.|.+.|++|+++|..+.  ..+.+.+  .|+....  ...+.+.++|+|+..-  | +.+.+..
T Consensus         8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~   87 (448)
T PRK03803          8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRA   87 (448)
T ss_pred             eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHH
Confidence            489999999999999999999999999997643  2234555  3665532  2334556889887653  2 2233332


Q ss_pred             Hhh-c-----ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           73 VVF-D-----KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        73 v~~-~-----~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ... |     +.+++..+.+..+|.-+.| ....++.-++..+...|..+.-+...|.|.
T Consensus        88 a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~  147 (448)
T PRK03803         88 AAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA  147 (448)
T ss_pred             HHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence            221 1     1122222223445544544 567777788888888887766665566554

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.35  E-value=0.00049  Score=58.72  Aligned_cols=64  Identities=11%  Similarity=0.165  Sum_probs=47.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC-------CCcccCCHHHHhhhCCeEEEecC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-------GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~-------g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      ||+|||+|.+|..+|..|+.++.  ++.++|+++++++.    +...       ..++....-+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            79999999999999999998875  79999998775533    2221       12233344577889999999763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.35  E-value=0.0011  Score=52.55  Aligned_cols=86  Identities=12%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----CCCc----ccCCHHHHhhhCCeEEEecCCHHH-
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGAT----VGGSPAEVIKKCTITIGMLADPAA-   69 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----~g~~----~~~s~~~~~~~advvi~~~p~~~~-   69 (226)
                      ++|.|||- ...|.++|..|.+.|..|+++|.+.-..  +..     +-.+    ...++.+.+++||+||++++.+.. 
T Consensus        63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~  140 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYK  140 (197)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCc
Confidence            36889987 5689999999999999999997543221  110     0001    011267889999999999998664 


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~   97 (226)
                      +..         +.+++|.++||.++..
T Consensus       141 i~~---------d~ik~GavVIDVGi~~  159 (197)
T cd01079         141 VPT---------ELLKDGAICINFASIK  159 (197)
T ss_pred             cCH---------HHcCCCcEEEEcCCCc
Confidence            321         3467999999998763

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.35  E-value=0.0004  Score=56.13  Aligned_cols=67  Identities=25%  Similarity=0.330  Sum_probs=47.7

Q ss_pred             eEEEEecChhHHHHHHHHH--hCCCeEE-EEcCCchhHHHHHHCC--CcccCCHHHHhhh--CCeEEEecCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLL--RNGFKVT-VWNRTLSKCDELVAHG--ATVGGSPAEVIKK--CTITIGMLADPAA   69 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~--~~G~~V~-~~dr~~~~~~~l~~~g--~~~~~s~~~~~~~--advvi~~~p~~~~   69 (226)
                      +|+|||+|.+|..+++.+.  ..|+++. ++|+++++..... .|  +....++.++++.  .|+|++|+|...+
T Consensus        86 rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~  159 (213)
T PRK05472         86 NVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAA  159 (213)
T ss_pred             EEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence            7999999999999998643  4678866 5788877653322 12  2233456677654  8999999998554

>PLN02602 lactate dehydrogenase

Probab=97.35  E-value=0.00055  Score=59.45  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHH----HC-----CCccc--CCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH-----GATVG--GSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~----~~-----g~~~~--~s~~~~~~~advvi~~~   64 (226)
                      +||+|||+|.+|..+|..|+..+.  ++.++|+++++++...    ..     ...+.  .+.+ .+++||+||++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitA  113 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTA  113 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECC
Confidence            389999999999999999998875  7999999887654322    11     12332  2444 478999999985

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=97.34  E-value=0.00056  Score=59.26  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=55.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC-CeEEEE-cCCchhHHHHHHC-------CC-------cccCCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAH-------GA-------TVGGSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~-dr~~~~~~~l~~~-------g~-------~~~~s~~~~~~~advvi~~   63 (226)
                      |||+|+|+ |.||+.+++.|..+. +++... +.+++.-+.+...       +.       .+.....+...++|+||.|
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            79999996 999999999998876 576654 5543322222110       01       1111122345789999999


Q ss_pred             cCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        64 ~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +|...+. ++.   .   .....|..+||.|..
T Consensus        81 ~p~~~s~-~~~---~---~~~~~G~~VIDlsg~  106 (341)
T TIGR00978        81 LPSEVAE-EVE---P---KLAEAGKPVFSNASN  106 (341)
T ss_pred             CCHHHHH-HHH---H---HHHHCCCEEEECChh
Confidence            9985443 333   2   223468888888743

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.34  E-value=0.00041  Score=59.92  Aligned_cols=88  Identities=16%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEE--EcCCchhHH-HHHHCC--Cccc-CCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTV--WNRTLSKCD-ELVAHG--ATVG-GSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~--~dr~~~~~~-~l~~~g--~~~~-~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      |||+|+|+ |..|..+.+.|.+.+|++.-  +-.+.+... .+.-.+  ..+. .+..+ ++++|++|+++|.. ....+
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~~   82 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRSF   82 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHHH
Confidence            47999997 99999999999987775321  212222221 111112  2221 12223 47899999999974 44444


Q ss_pred             hhcccccccccCCCcEEEecCCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +   ..   ..+.|..+||.|..
T Consensus        83 v---~~---~~~~G~~VIDlS~~   99 (336)
T PRK05671         83 A---EK---ARAAGCSVIDLSGA   99 (336)
T ss_pred             H---HH---HHHCCCeEEECchh
Confidence            4   22   23468899999953

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.33  E-value=0.00092  Score=56.79  Aligned_cols=110  Identities=14%  Similarity=0.058  Sum_probs=76.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHH---HHHHhhc--
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA---ALSVVFD--   76 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~---~~~v~~~--   76 (226)
                      +++|||--.=-..+++.|.+.|++|+++.-+.+.   ....|+..+.+.+++++++|+|+..+|....   ++..+..  
T Consensus         4 ~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~   80 (296)
T PRK08306          4 HIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK   80 (296)
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence            7899999888899999999999999997654332   2334888888889999999999998774211   1111100  


Q ss_pred             ---ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           77 ---KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        77 ---~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                         +...++.++++++++ .+...|...    +.+.++|+.++|.+
T Consensus        81 ~~~~~~~l~~l~~~~~v~-~G~~~~~~~----~~~~~~gi~~~~~~  121 (296)
T PRK08306         81 LVLTEELLELTPEHCTIF-SGIANPYLK----ELAKETNRKLVELF  121 (296)
T ss_pred             CcchHHHHHhcCCCCEEE-EecCCHHHH----HHHHHCCCeEEEEe
Confidence               123456788887555 455666632    45668899887764

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.33  E-value=0.00049  Score=49.05  Aligned_cols=65  Identities=20%  Similarity=0.177  Sum_probs=44.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHHhhhCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      +|.|||.|.+|..=++.|++.|.+|+++.++.+..+    ..++. ....++.++++++|+.++.++..-
T Consensus         9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n   74 (103)
T PF13241_consen    9 RVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELN   74 (103)
T ss_dssp             EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHH
Confidence            689999999999999999999999999998862111    22221 122234466778788777664433

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=97.32  E-value=0.00053  Score=57.45  Aligned_cols=65  Identities=11%  Similarity=-0.050  Sum_probs=46.3

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC----CcccCCHHHHh------hh-CCeEEEecCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG----ATVGGSPAEVI------KK-CTITIGMLAD   66 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g----~~~~~s~~~~~------~~-advvi~~~p~   66 (226)
                      +|.|+|. |.+|+.+++.|.+.|++|++..|++++........    ..-.+++.+++      +. +|.|+.+.|.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~   77 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP   77 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence            5788987 99999999999999999999999987643210001    11123444555      45 8999988774

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=97.32  E-value=0.00079  Score=55.53  Aligned_cols=107  Identities=14%  Similarity=0.153  Sum_probs=79.5

Q ss_pred             EEEEecChhHHHHHHHHHhCC---CeEEEEcCCchhHHHHHHC----------CCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            3 VGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G---~~V~~~dr~~~~~~~l~~~----------g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      ..++|.|...........+.-   .+|.+|+|+++.++.+++.          -+..+.+.++++..+|+|+.|++.   
T Consensus       141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls---  217 (333)
T KOG3007|consen  141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS---  217 (333)
T ss_pred             EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc---
Confidence            468999999988877665532   4799999999998888762          245678899999999999999976   


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+.+++|     +.++||+.|=-..+..|. ..+.-..+-+.++.|+|.
T Consensus       218 tePilfg-----ewlkpgthIdlVGsf~p~-mhEcDdelIq~a~vfVDs  260 (333)
T KOG3007|consen  218 TEPILFG-----EWLKPGTHIDLVGSFKPV-MHECDDELIQSACVFVDS  260 (333)
T ss_pred             CCceeee-----eeecCCceEeeeccCCch-HHHHhHHHhhhheEEEec
Confidence            3455654     356688655444555554 556677777788999997

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.31  E-value=0.00094  Score=57.41  Aligned_cols=65  Identities=14%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCchh--HH----HHHHC------CCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CD----ELVAH------GATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~~~--~~----~l~~~------g~~~~~s~~~~~~~advv   60 (226)
                      +||+|||+ |.+|..+|..|+..|.       ++.++|+++..  ++    .+...      ...+..+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999999998775       79999995432  22    12211      123445566788999999


Q ss_pred             EEecC
Q 027255           61 IGMLA   65 (226)
Q Consensus        61 i~~~p   65 (226)
                      |++.-
T Consensus        83 vitaG   87 (322)
T cd01338          83 LLVGA   87 (322)
T ss_pred             EEeCC
Confidence            99863

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=97.31  E-value=0.0033  Score=56.47  Aligned_cols=112  Identities=18%  Similarity=0.216  Sum_probs=71.4

Q ss_pred             eEEEEecChhHHH-HHHHHHhCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhhCCeEEEec--C-CHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~~~~~~advvi~~~--p-~~~~~~~v~~   75 (226)
                      +|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.++++|+|+..-  | +...++....
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~   80 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE   80 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence            4789999999998 99999999999999997654 33456666876643 2234456789888752  2 2233433221


Q ss_pred             ------cccccccc-cCCCcEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255           76 ------DKGGVLEQ-ICPGKGYIDMST-VDHETSIKISRAITSKGG  113 (226)
Q Consensus        76 ------~~~~l~~~-l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~  113 (226)
                            ++.+++.. +++..+|.-+.| ....++.-++..+...|.
T Consensus        81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~  126 (448)
T TIGR01082        81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL  126 (448)
T ss_pred             cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence                  11122222 223345544444 677777778888888785

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=97.31  E-value=0.0032  Score=56.70  Aligned_cols=113  Identities=20%  Similarity=0.249  Sum_probs=72.5

Q ss_pred             CeEEEEecChhHHH-HHHHHHhCCCeEEEEcCCch-hHHHHHHCCCccc-CCHHHHhhhCCeEEEec--C-CHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVG-GSPAEVIKKCTITIGML--A-DPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~-~s~~~~~~~advvi~~~--p-~~~~~~~v~   74 (226)
                      ++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.++++|+||..-  | +...++...
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~   87 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR   87 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence            47999999999999 89999999999999997653 3445666677653 22334556789888753  2 223333322


Q ss_pred             h------ccccccccc-CCCcEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255           75 F------DKGGVLEQI-CPGKGYIDMST-VDHETSIKISRAITSKGG  113 (226)
Q Consensus        75 ~------~~~~l~~~l-~~g~ivvd~st-~~~~~~~~l~~~~~~~g~  113 (226)
                      .      ++.+++..+ .+..+|.-+.| ....++.-+.+.++..|.
T Consensus        88 ~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~  134 (461)
T PRK00421         88 ELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL  134 (461)
T ss_pred             HCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            1      112232222 22345544444 677777778888888774

>PLN02477 glutamate dehydrogenase

Probab=97.30  E-value=0.0016  Score=57.58  Aligned_cols=162  Identities=14%  Similarity=0.166  Sum_probs=91.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCC----------chhHHHHHHCC--------CcccCCHHHH-hhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRT----------LSKCDELVAHG--------ATVGGSPAEV-IKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~----------~~~~~~l~~~g--------~~~~~s~~~~-~~~advv   60 (226)
                      ++|.|.|+|++|+..|+.|.+.|.+|+ +.|.+          .+.+.+..+.+        .+.. +.+++ ..+||++
T Consensus       207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dvl  285 (410)
T PLN02477        207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDVL  285 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccEE
Confidence            479999999999999999999999987 66776          55553433321        1212 22332 3478988


Q ss_pred             EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                      +-|--......+.+       +.+ +=++|+...+...  +.+..+.+.++|+.|+.--+      +..|-.  .+    
T Consensus       286 iP~Al~~~I~~~na-------~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~PD~~------aNaGGV--iv----  343 (410)
T PLN02477        286 IPAALGGVINKENA-------ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLPDIY------ANSGGV--TV----  343 (410)
T ss_pred             eeccccccCCHhHH-------HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEChHH------hCCCCe--ee----
Confidence            87753322222222       223 3456666665432  44556788899998864322      222222  11    


Q ss_pred             CCCCCcchhhcccccccccCcccC---Cccch-HHHHHHHHHHHHHhhcCCCchHHH
Q 027255          141 DLGGIANPMFKGKGPTMLQSNYAP---AFPLK-HQQKDMRLALALGDENAVSMPIAA  193 (226)
Q Consensus       141 ~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~-~~~kd~~~~~~~a~~~g~~~p~~~  193 (226)
                             .+++.... ...-.|..   .-.++ .+.+-++.+.+.+++.++++...+
T Consensus       344 -------s~~E~~qn-~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA  392 (410)
T PLN02477        344 -------SYFEWVQN-IQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCSLRMGA  392 (410)
T ss_pred             -------eHHHhhhc-cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence                   12222110 00001111   12344 556778888999999998765543

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.30  E-value=0.00053  Score=58.52  Aligned_cols=78  Identities=24%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      +||+|||. |..|..+.+.|.++-+ ++.....+..+         .. .+.++.++++|+||+|+|+.... ++.   .
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s~-~~~---~   68 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAAR-EAV---A   68 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHHH-HHH---H
Confidence            48999995 9999999999998763 44333222221         01 23345567899999999986444 443   2


Q ss_pred             ccccccCCCcEEEecCC
Q 027255           79 GVLEQICPGKGYIDMST   95 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st   95 (226)
                      .+   .+.|..|||+|+
T Consensus        69 ~~---~~~g~~VIDlSa   82 (313)
T PRK11863         69 LI---DNPATRVIDAST   82 (313)
T ss_pred             HH---HhCCCEEEECCh
Confidence            22   347889999994

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=97.30  E-value=0.0029  Score=52.27  Aligned_cols=110  Identities=23%  Similarity=0.275  Sum_probs=72.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC-CeE-EEEcCCchhH-----HHHH---HCCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG-FKV-TVWNRTLSKC-----DELV---AHGATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G-~~V-~~~dr~~~~~-----~~l~---~~g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |||+|.|+ |.||+.+.+.+.... +++ -.++|.++..     .++.   ..|+.+.+++.....++|++|=.+ .|+.
T Consensus         3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~~   81 (266)
T COG0289           3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPEA   81 (266)
T ss_pred             ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cchh
Confidence            69999999 999999999998765 564 4578876532     2222   235666777778888999999877 4455


Q ss_pred             HHHHhhcccccccccCCCc-EEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           70 ALSVVFDKGGVLEQICPGK-GYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~-ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      ..+.+   +   -.++.+. +||-+|--+++..+.+.+..++  +..+=+|
T Consensus        82 ~~~~l---~---~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~  124 (266)
T COG0289          82 TLENL---E---FALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAP  124 (266)
T ss_pred             hHHHH---H---HHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEec
Confidence            55554   2   2233444 4554544677887777777655  4434444

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=97.28  E-value=0.0013  Score=55.91  Aligned_cols=76  Identities=24%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCC-CeEEEE-cCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ||+|+|. |..|..+.+.|..+- +++... .+..          .. ..+.+++++++|++|+|+|+.. ..+..   .
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----------~~-~~~~~~~~~~~D~vFlalp~~~-s~~~~---~   67 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----------KD-AAERAKLLNAADVAILCLPDDA-AREAV---S   67 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----------cC-cCCHhHhhcCCCEEEECCCHHH-HHHHH---H
Confidence            7999987 999999999999874 343322 2221          11 1245567788999999999864 44443   2


Q ss_pred             ccccccCCCcEEEecCC
Q 027255           79 GVLEQICPGKGYIDMST   95 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st   95 (226)
                      .   ....|..|||+|+
T Consensus        68 ~---~~~~g~~VIDlSa   81 (310)
T TIGR01851        68 L---VDNPNTCIIDAST   81 (310)
T ss_pred             H---HHhCCCEEEECCh
Confidence            2   2347889999994

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.27  E-value=0.0014  Score=55.18  Aligned_cols=74  Identities=23%  Similarity=0.330  Sum_probs=58.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.+++..|.+.|..|++++...              .++.+..++||+||+++..+..+..       
T Consensus       156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~~-------  214 (287)
T PRK14173        156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPHLITP-------  214 (287)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCccCH-------
Confidence            36889987 6789999999999999999887432              3567888999999999988653321       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.+|||.++..
T Consensus       215 --~~vk~GavVIDVGin~  230 (287)
T PRK14173        215 --EMVRPGAVVVDVGINR  230 (287)
T ss_pred             --HHcCCCCEEEEccCcc
Confidence              4467999999998754

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.27  E-value=0.00042  Score=60.02  Aligned_cols=87  Identities=16%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeE---EEEcCCchhHHHHHHCCC--cccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKV---TVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V---~~~dr~~~~~~~l~~~g~--~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ||+||| .|..|..+.+.|.+++|++   .++.++.+.-+.+...|.  ...+-..+.++++|+||.|+|... ..+.. 
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~-s~~~a-   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV-SKEFA-   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH-HHHHH-
Confidence            689999 5999999999999988873   344444333333322232  221112344578999999998854 44444 


Q ss_pred             cccccccccCCCcEEEecCC
Q 027255           76 DKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st   95 (226)
                        .   ..+..|..|||.|+
T Consensus        79 --~---~~~~~G~~VID~ss   93 (339)
T TIGR01296        79 --P---KAAKCGAIVIDNTS   93 (339)
T ss_pred             --H---HHHHCCCEEEECCH
Confidence              2   23356788999985

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=97.26  E-value=0.003  Score=53.31  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=78.0

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~~~~   77 (226)
                      ||.|.|. |.+|..+-+++...|++ .+|..||.+ .+++  .|.....|..++.+.  .|++++++|. ..+.+++   
T Consensus         8 ~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l---   80 (286)
T TIGR01019         8 KVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPA-PFAADAI---   80 (286)
T ss_pred             cEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHH---
Confidence            6888886 99999999999999998 677777763 1121  488889999999886  7999999987 5666666   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ++..+. .-...+|-++-......+++.+.++++|++++--
T Consensus        81 ~e~~~~-Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGP  120 (286)
T TIGR01019        81 FEAIDA-GIELIVCITEGIPVHDMLKVKRYMEESGTRLIGP  120 (286)
T ss_pred             HHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECC
Confidence            333331 1223444444444445678889999988877644

ATP citrate lyases appear to form an outgroup.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.24  E-value=0.002  Score=55.41  Aligned_cols=65  Identities=15%  Similarity=0.240  Sum_probs=47.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCc--hhHHH----HHHC------CCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDE----LVAH------GATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~----l~~~------g~~~~~s~~~~~~~advv   60 (226)
                      +||+|||+ |.+|..+|..|...+.       ++.++|+++  ++++.    +...      +..+..+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999998874       799999954  22221    2211      123334566788999999


Q ss_pred             EEecC
Q 027255           61 IGMLA   65 (226)
Q Consensus        61 i~~~p   65 (226)
                      +++.-
T Consensus        84 VitAG   88 (323)
T TIGR01759        84 LLVGA   88 (323)
T ss_pred             EEeCC
Confidence            98853

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=97.24  E-value=0.0035  Score=53.87  Aligned_cols=96  Identities=20%  Similarity=0.192  Sum_probs=72.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL   81 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~   81 (226)
                      ++-|.|.|..|+.+|.++...|.+|.|+..+|=++-+..=.|.++. ..+++++.+|++|+++-+-..++.      +-+
T Consensus       211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkdVi~~------eh~  283 (420)
T COG0499         211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKDVIRK------EHF  283 (420)
T ss_pred             eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcCccCH------HHH
Confidence            5678899999999999999999999999999887655555687765 478899999999999865332221      123


Q ss_pred             cccCCCcEEEecCC----CCHHHHHHH
Q 027255           82 EQICPGKGYIDMST----VDHETSIKI  104 (226)
Q Consensus        82 ~~l~~g~ivvd~st----~~~~~~~~l  104 (226)
                      ..++.|.++.+..-    +.+...+++
T Consensus       284 ~~MkDgaIl~N~GHFd~EI~~~~L~~~  310 (420)
T COG0499         284 EKMKDGAILANAGHFDVEIDVAGLEEL  310 (420)
T ss_pred             HhccCCeEEecccccceeccHHHHHHh
Confidence            55778889988874    344444444

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.24  E-value=0.0016  Score=54.70  Aligned_cols=74  Identities=19%  Similarity=0.294  Sum_probs=59.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.+++..|.++|..|++++...              .++.+..++||+|++++..+..+..       
T Consensus       160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~i~~-------  218 (284)
T PRK14177        160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEFIKA-------  218 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCccCH-------
Confidence            36889987 6789999999999999999997432              3567788999999999988654322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.+|||.++..
T Consensus       219 --~~ik~gavVIDvGin~  234 (284)
T PRK14177        219 --DWISEGAVLLDAGYNP  234 (284)
T ss_pred             --HHcCCCCEEEEecCcc
Confidence              4567999999998754

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=97.24  E-value=0.002  Score=57.53  Aligned_cols=123  Identities=16%  Similarity=0.159  Sum_probs=75.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-HH---H-HH-HCCCcccC-CHHHHhhhCCeEEEec--C-CHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CD---E-LV-AHGATVGG-SPAEVIKKCTITIGML--A-DPAAAL   71 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~---~-l~-~~g~~~~~-s~~~~~~~advvi~~~--p-~~~~~~   71 (226)
                      ||.|||+|..|.++|+.|.+.|++|+++|..+.. ..   . +. ..|+.+.. ...+.++++|+|+..-  | +.+.+.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~   80 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ   80 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence            5899999999999999999999999999976542 11   1 22 24765532 1234557899887753  2 223333


Q ss_pred             HHhh-c-----ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           72 SVVF-D-----KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        72 ~v~~-~-----~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      .... |     ..+++..+.+.++|.-+.| ....++.-++..+...|..+.-+.-.|.|
T Consensus        81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~  140 (433)
T TIGR01087        81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP  140 (433)
T ss_pred             HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence            2211 1     1122222223345544444 67777788888888888765555455555

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.22  E-value=0.0018  Score=54.45  Aligned_cols=74  Identities=22%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.++|..|.++|..|++++...              .++.+.+++||+||+++..+..+..       
T Consensus       158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~i~~-------  216 (284)
T PRK14170        158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKFVKK-------  216 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCccCH-------
Confidence            36889997 5689999999999999999986432              3577888999999999988654322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.++||.++..
T Consensus       217 --~~vk~GavVIDvGin~  232 (284)
T PRK14170        217 --DYIKPGAIVIDVGMDR  232 (284)
T ss_pred             --HHcCCCCEEEEccCcc
Confidence              3467999999998764

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.22  E-value=0.0018  Score=54.50  Aligned_cols=74  Identities=18%  Similarity=0.262  Sum_probs=58.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh--CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~--~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      +++.|||- ...|.+++..|.+  ++..|++++..              +.++.+.+++||+||+++..+..+..     
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~~-----  219 (284)
T PRK14193        159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVTA-----  219 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccCH-----
Confidence            36889987 6789999999998  68899998753              24678889999999999988653321     


Q ss_pred             cccccccCCCcEEEecCCCC
Q 027255           78 GGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~   97 (226)
                          +.+++|.++||.+...
T Consensus       220 ----~~ik~GavVIDvGin~  235 (284)
T PRK14193        220 ----DMVKPGAAVLDVGVSR  235 (284)
T ss_pred             ----HHcCCCCEEEEccccc
Confidence                4577999999998754

>PRK05442 malate dehydrogenase; Provisional

Probab=97.21  E-value=0.001  Score=57.22  Aligned_cols=65  Identities=15%  Similarity=0.272  Sum_probs=46.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCch--hHH----HHHHC------CCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLS--KCD----ELVAH------GATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~~--~~~----~l~~~------g~~~~~s~~~~~~~advv   60 (226)
                      +||+|||+ |.+|..+|..|...+.       ++.++|+++.  +++    .+...      ...+..+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999987663       7999998543  222    12211      234445666888999999


Q ss_pred             EEecC
Q 027255           61 IGMLA   65 (226)
Q Consensus        61 i~~~p   65 (226)
                      +++.-
T Consensus        85 VitaG   89 (326)
T PRK05442         85 LLVGA   89 (326)
T ss_pred             EEeCC
Confidence            98753

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.21  E-value=0.0018  Score=54.31  Aligned_cols=74  Identities=28%  Similarity=0.323  Sum_probs=58.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.+++..|.++|..|++++..              +.++.+.+++||+||+++..+..+..       
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~-------  217 (278)
T PRK14172        159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFIDE-------  217 (278)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH-------
Confidence            36889987 578999999999999999999753              23577888999999999988654322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.+|||.+...
T Consensus       218 --~~ik~gavVIDvGin~  233 (278)
T PRK14172        218 --EYVKEGAIVIDVGTSS  233 (278)
T ss_pred             --HHcCCCcEEEEeeccc
Confidence              3467999999987643

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.21  E-value=0.0018  Score=54.75  Aligned_cols=74  Identities=19%  Similarity=0.272  Sum_probs=58.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.+++..|.++|..|++++...              .++.+.+++||+||+++..+..+..       
T Consensus       159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~~-------  217 (297)
T PRK14186        159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRPNLIGA-------  217 (297)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCH-------
Confidence            36889987 5689999999999999999986432              3567888999999999988653321       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        ..+++|.+|||.++..
T Consensus       218 --~~ik~gavVIDvGin~  233 (297)
T PRK14186        218 --EMVKPGAVVVDVGIHR  233 (297)
T ss_pred             --HHcCCCCEEEEecccc
Confidence              4567999999988654

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.20  E-value=0.00085  Score=58.08  Aligned_cols=88  Identities=18%  Similarity=0.245  Sum_probs=56.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-CCCe---EEEEc--CCchhHHHHHHCCCccc-CCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLR-NGFK---VTVWN--RTLSKCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~-~G~~---V~~~d--r~~~~~~~l~~~g~~~~-~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      |||+|||+ |..|..|.+.|.+ ..++   +..+.  ++..+.-.+......+. .++.+ .++.|++|+++|.. ..++
T Consensus         6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~~   83 (347)
T PRK06728          6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSRQ   83 (347)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHHH
Confidence            58999998 9999999999995 5666   54443  33222222222222222 23333 47899999999885 4545


Q ss_pred             HhhcccccccccCCCcEEEecCCC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +.   .   ...+.|..|||.|+.
T Consensus        84 ~~---~---~~~~~G~~VID~Ss~  101 (347)
T PRK06728         84 FV---N---QAVSSGAIVIDNTSE  101 (347)
T ss_pred             HH---H---HHHHCCCEEEECchh
Confidence            54   2   223578999999853

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=97.20  E-value=0.00023  Score=50.04  Aligned_cols=71  Identities=30%  Similarity=0.348  Sum_probs=53.1

Q ss_pred             eEEEEecChhHHHHHHHHH-hCCCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHh
Q 027255            2 EVGFLGLGIMGKAISMNLL-RNGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVV   74 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~-~~G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~   74 (226)
                      +|.++|+|..|..++.++. ..|+. +.++|.++++..+-. .|+.+..+.+++.+.  .|+.++++|. ..++++.
T Consensus         5 ~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~-~~a~~~~   79 (96)
T PF02629_consen    5 NVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPA-EAAQEVA   79 (96)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-H-HHHHHHH
T ss_pred             eEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCH-HHHHHHH
Confidence            6899999999999986554 45776 557899998754211 267777789998887  9999999988 4455555

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.20  E-value=0.0018  Score=54.75  Aligned_cols=74  Identities=24%  Similarity=0.341  Sum_probs=58.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.+++..|.++|..|++++..              +.++.+.+++||+|++++..+..+.        
T Consensus       168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~--------  225 (299)
T PLN02516        168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIK--------  225 (299)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC--------
Confidence            36889997 568999999999999999999753              2457788999999999997753222        


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                       .+.+++|.+|||.++..
T Consensus       226 -~~~vk~gavVIDvGin~  242 (299)
T PLN02516        226 -GDWIKPGAAVIDVGTNA  242 (299)
T ss_pred             -HHHcCCCCEEEEeeccc
Confidence             14577999999988654

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.20  E-value=0.0017  Score=58.05  Aligned_cols=64  Identities=17%  Similarity=0.259  Sum_probs=49.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhC-------CC--eEEEEcCCchhHHHHH----HC------CCcccCCHHHHhhhCCeEE
Q 027255            2 EVGFLGL-GIMGKAISMNLLRN-------GF--KVTVWNRTLSKCDELV----AH------GATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~-------G~--~V~~~dr~~~~~~~l~----~~------g~~~~~s~~~~~~~advvi   61 (226)
                      ||+|||+ |.+|..+|-.|+..       +.  ++.++|++.++++...    ..      .+.+..+..+.+++||+||
T Consensus       102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVV  181 (444)
T PLN00112        102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWAL  181 (444)
T ss_pred             EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEE
Confidence            7999999 99999999999987       64  7889999998765422    11      2333456668889999999


Q ss_pred             EecC
Q 027255           62 GMLA   65 (226)
Q Consensus        62 ~~~p   65 (226)
                      ++.-
T Consensus       182 itAG  185 (444)
T PLN00112        182 LIGA  185 (444)
T ss_pred             ECCC
Confidence            9863

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.19  E-value=0.0019  Score=54.20  Aligned_cols=74  Identities=16%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.++|..|.+.+..|++++...              .++.+..++||+||+++..+..+..       
T Consensus       158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~-------  216 (282)
T PRK14166        158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLRS-------  216 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccCH-------
Confidence            36889987 5689999999999999999987542              3577888999999999988654332       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        ..+++|.++||.+...
T Consensus       217 --~~vk~GavVIDvGin~  232 (282)
T PRK14166        217 --DMVKEGVIVVDVGINR  232 (282)
T ss_pred             --HHcCCCCEEEEecccc
Confidence              3467999999988653

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.16  E-value=0.0026  Score=55.45  Aligned_cols=114  Identities=17%  Similarity=0.183  Sum_probs=65.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|..|+.++++|+..|. +++++|.+.=....+..+        |-..+....+-++  +.++-+...+..-..
T Consensus        30 ~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~  109 (355)
T PRK05597         30 KVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTW  109 (355)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCH
Confidence            79999999999999999999996 688888765333333222        2111212222221  245544444321111


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      ++..       +.+..-.+|||++.. +..-..+.+.+.+.++.++.+.+.|.
T Consensus       110 ~~~~-------~~~~~~DvVvd~~d~-~~~r~~~n~~c~~~~ip~v~~~~~g~  154 (355)
T PRK05597        110 SNAL-------DELRDADVILDGSDN-FDTRHLASWAAARLGIPHVWASILGF  154 (355)
T ss_pred             HHHH-------HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            1111       122234577777654 34444566677777887777766654

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.16  E-value=0.0019  Score=54.32  Aligned_cols=74  Identities=24%  Similarity=0.279  Sum_probs=58.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.++|..|.++|..|++++...              .++.+.+++||+||.++..+..+.        
T Consensus       159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p~~i~--------  216 (284)
T PRK14190        159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKPKLIT--------  216 (284)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCC--------
Confidence            36889987 6789999999999999999986432              357788999999999997765322        


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                       .+.+++|.+|||.+...
T Consensus       217 -~~~ik~gavVIDvGi~~  233 (284)
T PRK14190        217 -ADMVKEGAVVIDVGVNR  233 (284)
T ss_pred             -HHHcCCCCEEEEeeccc
Confidence             13467999999988654

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.15  E-value=0.0016  Score=56.08  Aligned_cols=64  Identities=13%  Similarity=0.164  Sum_probs=46.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC-------CeEEEEcCCch--hHHH----HHH------CCCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG-------FKVTVWNRTLS--KCDE----LVA------HGATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G-------~~V~~~dr~~~--~~~~----l~~------~g~~~~~s~~~~~~~advv   60 (226)
                      .||+|+|+ |.+|+.++..|...+       .+|.++|+++.  +++.    +..      ..+....+..+.+++||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            48999999 999999999998854       48999999653  2221    111      0122345667888999999


Q ss_pred             EEec
Q 027255           61 IGML   64 (226)
Q Consensus        61 i~~~   64 (226)
                      |.+.
T Consensus        83 I~tA   86 (325)
T cd01336          83 ILVG   86 (325)
T ss_pred             EEeC
Confidence            9875

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.14  E-value=0.0021  Score=54.72  Aligned_cols=64  Identities=22%  Similarity=0.338  Sum_probs=46.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHH----HHHC------CCcccC-CHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAH------GATVGG-SPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~----l~~~------g~~~~~-s~~~~~~~advvi~~~   64 (226)
                      |||+|||.|.+|+.+|-.|...+  .++.++|+++++.+-    +...      ...+.. .--+.++++|+|+++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence            79999999999999999998765  479999999665432    2211      122222 2246678999999987

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.13  E-value=0.0023  Score=53.72  Aligned_cols=74  Identities=18%  Similarity=0.254  Sum_probs=58.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.++|..|.++|..|++++...              .++.+..++||+||+++..+..+..       
T Consensus       157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~i~~-------  215 (282)
T PRK14169        157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHFIGA-------  215 (282)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCccCH-------
Confidence            36889987 5689999999999999999986432              2567888999999999988664322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.+|||.+...
T Consensus       216 --~~vk~GavVIDvGin~  231 (282)
T PRK14169        216 --DAVKPGAVVIDVGISR  231 (282)
T ss_pred             --HHcCCCcEEEEeeccc
Confidence              3467999999988654

>cd00704 MDH Malate dehydrogenase

Probab=97.13  E-value=0.0012  Score=56.84  Aligned_cols=64  Identities=14%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCc--hhHHHH----HHC------CCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDEL----VAH------GATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~l----~~~------g~~~~~s~~~~~~~advv   60 (226)
                      .||+|||+ |.+|+.++..|+..|.       ++.++|+++  ++.+..    ...      +..+..+..+.+++||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            38999999 9999999999997652       599999987  543221    111      223335677889999999


Q ss_pred             EEec
Q 027255           61 IGML   64 (226)
Q Consensus        61 i~~~   64 (226)
                      +++.
T Consensus        81 VitA   84 (323)
T cd00704          81 ILVG   84 (323)
T ss_pred             EEeC
Confidence            9875

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.12  E-value=0.0031  Score=54.86  Aligned_cols=88  Identities=22%  Similarity=0.250  Sum_probs=60.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHH-CCCcccCCHH---------HHh--hhCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-HGATVGGSPA---------EVI--KKCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~-~g~~~~~s~~---------~~~--~~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...+..+...|. +|++.|+++++++..++ .+.....+..         +..  ..+|++|.|+....
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~  250 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP  250 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence            58899999999988777777784 68888999999988877 4544332221         111  24888998887665


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .+.+.+       ..++++..++..+..
T Consensus       251 ~~~~ai-------~~~r~gG~v~~vGv~  271 (350)
T COG1063         251 ALDQAL-------EALRPGGTVVVVGVY  271 (350)
T ss_pred             HHHHHH-------HHhcCCCEEEEEecc
Confidence            555554       555666666655554

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.11  E-value=0.0024  Score=57.09  Aligned_cols=109  Identities=15%  Similarity=0.078  Sum_probs=68.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEE-c----------CCchhHHHHHHC------------CCcccCCHHHHhh-h
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW-N----------RTLSKCDELVAH------------GATVGGSPAEVIK-K   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~-d----------r~~~~~~~l~~~------------g~~~~~s~~~~~~-~   56 (226)
                      ++|.|.|.|++|+..|+.|.+.|.+|+.+ |          .+.+.+.+..+.            ++... +.+++.. +
T Consensus       233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~d  311 (445)
T PRK09414        233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSVP  311 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccccccC
Confidence            47999999999999999999999998876 7          666655444432            11111 2333333 6


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      |||++-|...+....+..   ..+.+  .+=++|+...+. |. +.+..+.+.++|+.|+.
T Consensus       312 ~DVliPaAl~n~It~~~a---~~i~~--~~akiIvEgAN~-p~-t~~A~~~L~~rGI~~vP  365 (445)
T PRK09414        312 CDIALPCATQNELDEEDA---KTLIA--NGVKAVAEGANM-PS-TPEAIEVFLEAGVLFAP  365 (445)
T ss_pred             CcEEEecCCcCcCCHHHH---HHHHH--cCCeEEEcCCCC-CC-CHHHHHHHHHCCcEEEC
Confidence            999999886644333333   22221  122456655554 33 44456778889988863

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.11  E-value=0.0023  Score=53.77  Aligned_cols=74  Identities=22%  Similarity=0.220  Sum_probs=58.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.+++..|.++|..|++++...              .++.+..++||+||+++..+..+..       
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~~-------  217 (282)
T PRK14180        159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNFITA-------  217 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCcCCH-------
Confidence            36889987 5689999999999999999987532              2566778999999999988654322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        ..+++|.+|||.++..
T Consensus       218 --~~vk~gavVIDvGin~  233 (282)
T PRK14180        218 --DMVKEGAVVIDVGINH  233 (282)
T ss_pred             --HHcCCCcEEEEecccc
Confidence              4467999999988643

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.11  E-value=0.0045  Score=55.95  Aligned_cols=108  Identities=10%  Similarity=0.019  Sum_probs=71.3

Q ss_pred             CeEEEEec----------ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----------------------CCcccC
Q 027255            1 MEVGFLGL----------GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----------------------GATVGG   48 (226)
Q Consensus         1 m~IgvIG~----------G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----------------------g~~~~~   48 (226)
                      .||+|+|+          .+-...+++.|.+.|.+|.+||+--...+.-...                      ++..+.
T Consensus       325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (473)
T PLN02353        325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW  404 (473)
T ss_pred             CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence            37899998          4577889999999999999999864332211011                      235567


Q ss_pred             CHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           49 SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        49 s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      ++.++++++|+|++++..++ .+..-  ...+.+.+.+..+|+|+-.....      +.+++.|+.|+.
T Consensus       405 ~~~~a~~~aD~vvi~t~~~e-f~~l~--~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~  464 (473)
T PLN02353        405 DAYEATKGAHGICILTEWDE-FKTLD--YQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS  464 (473)
T ss_pred             CHHHHhcCCCEEEECCCChH-hcccC--HHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence            77889999999999998754 43321  02333445455589998776421      222345887765

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=97.10  E-value=0.0056  Score=51.24  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.|+.
T Consensus       123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  167 (280)
T TIGR03366       123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT  167 (280)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence            588999999999998888888986 88889999988877777764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.10  E-value=0.0068  Score=54.85  Aligned_cols=114  Identities=20%  Similarity=0.116  Sum_probs=69.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-----hHHHHHHCCCcccCC-HHHHhhhCCeEEEec---CCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGS-PAEVIKKCTITIGML---ADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s-~~~~~~~advvi~~~---p~~~~~~~   72 (226)
                      +|.|||.|..|..+|..|.+.|++|+++|+++.     ..+.+.+.|+..... ..+....+|+||++.   |+...+..
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~~~   97 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLLAA   97 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHHHH
Confidence            699999999999999999999999999996643     224466668765321 111345689988875   33333222


Q ss_pred             Hhh------cccccc-cccC---CCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255           73 VVF------DKGGVL-EQIC---PGKGYIDMST-VDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        73 v~~------~~~~l~-~~l~---~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~  115 (226)
                      .-.      ++.+++ ..+.   +..+|.-+.| ....++.-++..+...|...
T Consensus        98 a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~  151 (480)
T PRK01438         98 AADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA  151 (480)
T ss_pred             HHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe
Confidence            211      111222 1222   2234544444 56677777788887766543

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.10  E-value=0.0025  Score=53.77  Aligned_cols=74  Identities=22%  Similarity=0.221  Sum_probs=58.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.+++..|.+++..|++++...              .++.+.+++||+||+++..+..+..       
T Consensus       161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~i~~-------  219 (294)
T PRK14187        161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNFVKY-------  219 (294)
T ss_pred             CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCH-------
Confidence            36889987 5689999999999999999987532              3567888999999999988664332       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.+|||.+...
T Consensus       220 --~~ik~gaiVIDVGin~  235 (294)
T PRK14187        220 --SWIKKGAIVIDVGINS  235 (294)
T ss_pred             --HHcCCCCEEEEecccc
Confidence              3467999999987653

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.08  E-value=0.0066  Score=55.83  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=46.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH---------CC------Ccc----cC---CHHHHhhhCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA---------HG------ATV----GG---SPAEVIKKCT   58 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~---------~g------~~~----~~---s~~~~~~~ad   58 (226)
                      +|.|.|. |.+|+.+++.|++.|++|++++|+.++.+.+.+         .|      +.+    ..   +..+++.++|
T Consensus        82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD  161 (576)
T PLN03209         82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS  161 (576)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence            4778876 999999999999999999999999988766532         11      111    12   2334566789


Q ss_pred             eEEEecC
Q 027255           59 ITIGMLA   65 (226)
Q Consensus        59 vvi~~~p   65 (226)
                      +||.+..
T Consensus       162 iVVn~AG  168 (576)
T PLN03209        162 VVICCIG  168 (576)
T ss_pred             EEEEccc
Confidence            9988863

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.08  E-value=0.00092  Score=57.70  Aligned_cols=87  Identities=18%  Similarity=0.203  Sum_probs=54.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC---eEEEEcC--CchhHHHHHHCCCcccCCHHHH-hhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVWNR--TLSKCDELVAHGATVGGSPAEV-IKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~---~V~~~dr--~~~~~~~l~~~g~~~~~s~~~~-~~~advvi~~~p~~~~~~~v   73 (226)
                      |+|+|||+ |..|..+.+.|.++.|   ++.....  +..+.-.+......+. ++++. .+++|++|+|+|.. ...++
T Consensus         5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~~~   82 (336)
T PRK08040          5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASAAY   82 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHHHH
Confidence            58999998 9999999999998554   4554432  2222111221122222 34443 26899999999885 44444


Q ss_pred             hhcccccccccCCCcEEEecCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      .   ..   ..+.|..|||+|.
T Consensus        83 ~---~~---~~~~g~~VIDlS~   98 (336)
T PRK08040         83 A---EE---ATNAGCLVIDSSG   98 (336)
T ss_pred             H---HH---HHHCCCEEEECCh
Confidence            4   22   2347899999995

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.07  E-value=0.0017  Score=55.52  Aligned_cols=65  Identities=18%  Similarity=0.274  Sum_probs=46.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchh--HHHHHHC--CCccc-----CCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSK--CDELVAH--GATVG-----GSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~l~~~--g~~~~-----~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+ |.+|..+|..|+..+.  ++.++|++..+  +..+...  .....     +++.+.++++|+|+++.-
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG   77 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG   77 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence            89999999 9999999999998884  79999987211  1122222  11222     223678899999999864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.06  E-value=0.0045  Score=53.59  Aligned_cols=45  Identities=36%  Similarity=0.397  Sum_probs=37.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcC---CchhHHHHHHCCCcc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR---TLSKCDELVAHGATV   46 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr---~~~~~~~l~~~g~~~   46 (226)
                      +|.|+|+|.+|...++.+...|.+|++++|   ++++.+.+.+.|+..
T Consensus       175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~  222 (355)
T cd08230         175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY  222 (355)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence            588999999999999888888999999998   677777777777653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.04  E-value=0.0031  Score=53.07  Aligned_cols=74  Identities=23%  Similarity=0.336  Sum_probs=58.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.+++..|.+.+..|++++...              .++.+..++||+||+++..+..+..       
T Consensus       160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp~~i~~-------  218 (288)
T PRK14171        160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSPLKLTA-------  218 (288)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCCCccCH-------
Confidence            36889987 5689999999999999999987421              3577888999999999987653322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        ..+++|.+|||.+...
T Consensus       219 --~~vk~GavVIDvGin~  234 (288)
T PRK14171        219 --EYFNPESIVIDVGINR  234 (288)
T ss_pred             --HHcCCCCEEEEeeccc
Confidence              4467999999988653

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.04  E-value=0.002  Score=56.03  Aligned_cols=87  Identities=20%  Similarity=0.260  Sum_probs=55.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCC-eEEEEcCCchhHHH-HHH---C-----------CCccc-CCHHHHhhhCCeEEE
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE-LVA---H-----------GATVG-GSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~-l~~---~-----------g~~~~-~s~~~~~~~advvi~   62 (226)
                      +||+|+| .|.+|..+.+.|.++.. ++..+.++++...+ +..   .           ...+. .+++ .+.++|+||.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence            4899998 79999999999997653 77777555443221 110   0           11121 2333 3478999999


Q ss_pred             ecCCHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255           63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        63 ~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      |+|... ..++.   +.   ....|..+||.|.
T Consensus        83 a~p~~~-s~~~~---~~---~~~~G~~vIDls~  108 (349)
T PRK08664         83 ALPSDV-AGEVE---EE---FAKAGKPVFSNAS  108 (349)
T ss_pred             eCChhH-HHHHH---HH---HHHCCCEEEECCc
Confidence            999853 33443   22   2246788899885

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.03  E-value=0.0064  Score=52.39  Aligned_cols=44  Identities=18%  Similarity=0.135  Sum_probs=38.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus       172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~  216 (343)
T PRK09880        172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD  216 (343)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence            68899999999988888888897 588999999999888777764

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.03  E-value=0.0032  Score=55.36  Aligned_cols=64  Identities=16%  Similarity=0.273  Sum_probs=46.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCC-------eEEEE--cCCchhHHHHHH----------CCCcccCCHHHHhhhCCeEE
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVW--NRTLSKCDELVA----------HGATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~--dr~~~~~~~l~~----------~g~~~~~s~~~~~~~advvi   61 (226)
                      ||+|||+ |.+|..+|-.|+..+.       .++++  |++.++++...-          ..+.+..+..+.+++||+||
T Consensus        46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVV  125 (387)
T TIGR01757        46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWAL  125 (387)
T ss_pred             EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEE
Confidence            7999999 9999999999998763       24445  888887654221          12343456668889999999


Q ss_pred             EecC
Q 027255           62 GMLA   65 (226)
Q Consensus        62 ~~~p   65 (226)
                      ++.-
T Consensus       126 itAG  129 (387)
T TIGR01757       126 LIGA  129 (387)
T ss_pred             ECCC
Confidence            9753

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=97.03  E-value=0.0041  Score=54.92  Aligned_cols=115  Identities=13%  Similarity=0.140  Sum_probs=69.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|..|..+|.+|+..|. +++++|.+.=....+..+        |-..+....+.+.  +.++-+.+.+..-..
T Consensus        44 ~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~  123 (392)
T PRK07878         44 RVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDP  123 (392)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCCh
Confidence            69999999999999999999997 688998765443334332        2111111222222  244544444321111


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      .+.       .+.+..-.+|||++. .+.....+.+.+.+.++.|+.+.+.|-.
T Consensus       124 ~~~-------~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p~v~~~~~g~~  169 (392)
T PRK07878        124 SNA-------VELFSQYDLILDGTD-NFATRYLVNDAAVLAGKPYVWGSIYRFE  169 (392)
T ss_pred             hHH-------HHHHhcCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEeccCE
Confidence            111       112233468888765 4566666888888889989888776643

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.02  E-value=0.013  Score=53.31  Aligned_cols=114  Identities=17%  Similarity=0.089  Sum_probs=69.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch--hHHHHHHC--CCcccC--CHHHHhhhCCeEEEe--cCCH-----H
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAH--GATVGG--SPAEVIKKCTITIGM--LADP-----A   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~--~~~~l~~~--g~~~~~--s~~~~~~~advvi~~--~p~~-----~   68 (226)
                      +|.|+|+|..|.++|+.|.+.|++|+++|....  ..+.+.+.  |+....  ...+.+.++|+||..  +|..     +
T Consensus         9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~~~~~   88 (498)
T PRK02006          9 MVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEAALAP   88 (498)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcccccCH
Confidence            699999999999999999999999999997543  33445555  444321  234556689988886  3332     2


Q ss_pred             HHHHHhh-c-----cccc-ccccC-------CCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255           69 AALSVVF-D-----KGGV-LEQIC-------PGKGYIDMST-VDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        69 ~~~~v~~-~-----~~~l-~~~l~-------~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~  115 (226)
                      .+...-. +     ..++ ...+.       ...+|--+.| ....++.-++..+...|...
T Consensus        89 ~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~  150 (498)
T PRK02006         89 LVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV  150 (498)
T ss_pred             HHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence            2222110 0     0011 11111       1144544444 67777778888888877653

>PLN00106 malate dehydrogenase

Probab=97.01  E-value=0.0037  Score=53.72  Aligned_cols=65  Identities=14%  Similarity=0.227  Sum_probs=46.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchhH--HHHHHC----CCc---ccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKC--DELVAH----GAT---VGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~l~~~----g~~---~~~s~~~~~~~advvi~~~p   65 (226)
                      .||+|||+ |.+|..+|..|+.++.  ++.++|+++...  ..+...    .+.   -.+++.++++++|+||++.-
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            37999999 9999999999997664  799999977221  122221    111   12345788999999999863

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.99  E-value=0.0038  Score=52.38  Aligned_cols=74  Identities=19%  Similarity=0.226  Sum_probs=57.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.+++..|.+++..|++++...              .++.+..++||+|++++..+..+..       
T Consensus       158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk~~~i~~-------  216 (282)
T PRK14182        158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGKAELVKG-------  216 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCccCH-------
Confidence            36889987 5689999999999999999986532              3567788999999999987543321       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.++||.+...
T Consensus       217 --~~ik~gaiVIDvGin~  232 (282)
T PRK14182        217 --AWVKEGAVVIDVGMNR  232 (282)
T ss_pred             --HHcCCCCEEEEeecee
Confidence              4467999999988654

>PRK14851 hypothetical protein; Provisional

Probab=96.97  E-value=0.0052  Score=57.85  Aligned_cols=115  Identities=14%  Similarity=0.076  Sum_probs=70.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|+|||+|..|+.++.+|+..|. +++++|.+.=....+..+        |...+.-..+.+.  +.++-|.+.+..-.-
T Consensus        45 ~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~  124 (679)
T PRK14851         45 KVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINA  124 (679)
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCCh
Confidence            79999999999999999999996 588887654333333332        2222222222222  245555554331111


Q ss_pred             HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      ++ +   .   ..+..-.+|||++.. .......+.+.+.+.++.++.+.+.|.
T Consensus       125 ~n-~---~---~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~  171 (679)
T PRK14851        125 DN-M---D---AFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGY  171 (679)
T ss_pred             HH-H---H---HHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccc
Confidence            11 1   1   222344688998875 345556777788888999999877664

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.96  E-value=0.0023  Score=54.70  Aligned_cols=64  Identities=23%  Similarity=0.215  Sum_probs=50.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHH---HHHC------------CCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDE---LVAH------------GATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~---l~~~------------g~~~~~s~~~~~~~advvi~~~   64 (226)
                      |+|.|-|+ |.+|+.+.+.|+.+||.|+..-|+++.-+.   +.+.            .+....+..+++++||.||=+.
T Consensus         7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A   86 (327)
T KOG1502|consen    7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA   86 (327)
T ss_pred             cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence            57889987 999999999999999999999998886322   3332            1334568889999999998654

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.93  E-value=0.0065  Score=53.84  Aligned_cols=107  Identities=11%  Similarity=0.127  Sum_probs=64.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh--hhCCeEEEe--cC-CHHHH---HH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI--KKCTITIGM--LA-DPAAA---LS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~--~~advvi~~--~p-~~~~~---~~   72 (226)
                      |+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.|+... . .+..  +++|+|+..  +| +.+.+   ++
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~   76 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN   76 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence            89999999999999999999 9999999996543221 223366553 2 2223  468877765  22 22222   22


Q ss_pred             HhhcccccccccCCCcEEEec-CCCCHHHHHHHHHHHHhcCC
Q 027255           73 VVFDKGGVLEQICPGKGYIDM-STVDHETSIKISRAITSKGG  113 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~~g~  113 (226)
                      ++ ++-+++..+. ..+|--+ |.....++.-++..+...|.
T Consensus        77 i~-~~~e~~~~~~-~~~i~ITGT~GKTTTt~ml~~iL~~~g~  116 (401)
T PRK03815         77 LI-SEYDYFYDVM-PFSIWISGTNGKTTTTQMTTHLLEDFGA  116 (401)
T ss_pred             Hh-hHHHHHHHhc-CCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence            22 1112222222 2344444 44566777777778877663

>PRK06813 homoserine dehydrogenase; Validated

Probab=96.93  E-value=0.0047  Score=53.57  Aligned_cols=121  Identities=14%  Similarity=0.180  Sum_probs=70.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--------CCeEE---EEcCCchhHH-------HHHHCC--Cc-----ccCCHHHHh-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--------GFKVT---VWNRTLSKCD-------ELVAHG--AT-----VGGSPAEVI-   54 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--------G~~V~---~~dr~~~~~~-------~l~~~g--~~-----~~~s~~~~~-   54 (226)
                      ++|+++|+|.+|+.+++.|.++        |.++.   +.+++.....       .+.+.+  ..     ....+.+.. 
T Consensus         3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~~   82 (346)
T PRK06813          3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERAT   82 (346)
T ss_pred             eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHhc
Confidence            4799999999999999998653        44433   3465543322       111110  00     111222222 


Q ss_pred             h--hCCeEEEecCCH----HHHHHHhhcccccccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCcE-EecCCCCChHh
Q 027255           55 K--KCTITIGMLADP----AAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHF-LEAPVSGSKQP  126 (226)
Q Consensus        55 ~--~advvi~~~p~~----~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~~-ld~pv~g~~~~  126 (226)
                      .  ..|||+-|+|++    +.....      +...++.|+.||..+... .....++.+..+++|+.| .++.|.|+-|-
T Consensus        83 ~~~~~dVvVe~T~s~~~~~e~a~~~------~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPi  156 (346)
T PRK06813         83 DNISGTVLVESTVTNLKDGNPGKQY------IKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPT  156 (346)
T ss_pred             CCCCCCEEEECCCCccCCchHHHHH------HHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccch
Confidence            2  469999998764    222222      235677888888877631 223366777777788875 46777777554


Q ss_pred             h
Q 027255          127 A  127 (226)
Q Consensus       127 a  127 (226)
                      .
T Consensus       157 I  157 (346)
T PRK06813        157 L  157 (346)
T ss_pred             H
Confidence            3

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.93  E-value=0.0026  Score=54.46  Aligned_cols=64  Identities=17%  Similarity=0.263  Sum_probs=45.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchhHH--HHHHC--CCccc----C-CHHHHhhhCCeEEEecC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCD--ELVAH--GATVG----G-SPAEVIKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~--g~~~~----~-s~~~~~~~advvi~~~p   65 (226)
                      ||+|||+ |.+|..+|..|+..++  ++.++|+++...+  .+...  ...+.    . ++.+.++++|+|+++.-
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG   76 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAG   76 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCC
Confidence            7999999 9999999999998875  7999999773211  12221  11222    1 23678899999998864

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.92  E-value=0.0046  Score=52.34  Aligned_cols=74  Identities=26%  Similarity=0.275  Sum_probs=57.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~----G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|||- ...|.++|..|.+.    +..|++++...              .++.+.+++||+||+++..+..+..   
T Consensus       162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGkp~~i~~---  224 (297)
T PRK14168        162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGVPNLVKP---  224 (297)
T ss_pred             CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCCcCccCH---
Confidence            36889987 67899999999987    67899886432              3577888999999999977553321   


Q ss_pred             cccccccccCCCcEEEecCCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~   97 (226)
                            +.+++|.+|||.+...
T Consensus       225 ------~~ik~gavVIDvGin~  240 (297)
T PRK14168        225 ------EWIKPGATVIDVGVNR  240 (297)
T ss_pred             ------HHcCCCCEEEecCCCc
Confidence                  4467999999988653

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=96.92  E-value=0.0014  Score=55.72  Aligned_cols=65  Identities=26%  Similarity=0.321  Sum_probs=49.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|+|. |.+|+.+++.|+++|++|++.+|+++....+...++..       ..+..++++.+|+||-+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            78999985 99999999999999999999999887654443333322       1234566778899887763

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.92  E-value=0.0042  Score=53.41  Aligned_cols=74  Identities=23%  Similarity=0.313  Sum_probs=58.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ..+|.++|..|.+++..|++++...              .++.+..++||+||+++..+..+..       
T Consensus       215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~v~~-------  273 (345)
T PLN02897        215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNLVRG-------  273 (345)
T ss_pred             CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCccCH-------
Confidence            36889987 5689999999999999999886432              3567788999999999988654322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.+|||.+...
T Consensus       274 --d~vk~GavVIDVGin~  289 (345)
T PLN02897        274 --SWLKPGAVVIDVGTTP  289 (345)
T ss_pred             --HHcCCCCEEEEccccc
Confidence              3467999999988753

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.91  E-value=0.0064  Score=50.38  Aligned_cols=110  Identities=17%  Similarity=0.088  Sum_probs=63.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEc----------CCchhHHHH---HH-CC------------CcccCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWN----------RTLSKCDEL---VA-HG------------ATVGGSPAEV   53 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~d----------r~~~~~~~l---~~-~g------------~~~~~s~~~~   53 (226)
                      ++|.|.|.|++|+..|+.|.+.|.+|+ +.|          .+.+.+..+   .. .+            .+.. +.+++
T Consensus        39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~  117 (254)
T cd05313          39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKP  117 (254)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcch
Confidence            479999999999999999999999987 555          222233221   11 11            2222 33343


Q ss_pred             -hhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           54 -IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        54 -~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                       ...|||++-|--......+..   ..+..  .+=++|+...+. |.+. +..+.+.++|+.|+.-
T Consensus       118 ~~~~~DIliPcAl~~~I~~~na---~~i~~--~~ak~I~EgAN~-p~t~-~a~~~L~~rGI~vvPD  176 (254)
T cd05313         118 WEVPCDIAFPCATQNEVDAEDA---KLLVK--NGCKYVAEGANM-PCTA-EAIEVFRQAGVLFAPG  176 (254)
T ss_pred             hcCCCcEEEeccccccCCHHHH---HHHHH--cCCEEEEeCCCC-CCCH-HHHHHHHHCCcEEECc
Confidence             346998888854322222222   11211  023455555543 3333 5667888999988744

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.90  E-value=0.0049  Score=51.89  Aligned_cols=74  Identities=23%  Similarity=0.326  Sum_probs=57.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~----G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|||- ...|.++|..|.++    +..|++++...              .++.+.+++||+||+++..+..+..   
T Consensus       154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~~i~~---  216 (287)
T PRK14181        154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPLFIKE---  216 (287)
T ss_pred             CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCH---
Confidence            36889987 56899999999988    78899887532              3577888999999999988653322   


Q ss_pred             cccccccccCCCcEEEecCCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~   97 (226)
                            +.+++|.+|||.+...
T Consensus       217 ------~~ik~GavVIDvGin~  232 (287)
T PRK14181        217 ------EMIAEKAVIVDVGTSR  232 (287)
T ss_pred             ------HHcCCCCEEEEecccc
Confidence                  4567999999988654

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.90  E-value=0.0044  Score=53.56  Aligned_cols=74  Identities=22%  Similarity=0.334  Sum_probs=58.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||- ...|.++|..|.+++..|++++...              .++.+.+++||+||.++..+..+..       
T Consensus       232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~i~~-------  290 (364)
T PLN02616        232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNMVRG-------  290 (364)
T ss_pred             CEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCcCCH-------
Confidence            36888987 6789999999999999999986432              3577888999999999988654322       


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                        +.+++|.+|||.+...
T Consensus       291 --d~vK~GAvVIDVGIn~  306 (364)
T PLN02616        291 --SWIKPGAVVIDVGINP  306 (364)
T ss_pred             --HHcCCCCEEEeccccc
Confidence              3467999999988653

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.88  E-value=0.0061  Score=53.43  Aligned_cols=113  Identities=18%  Similarity=0.173  Sum_probs=64.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|..|..++.+|+..|. +++++|.+.=....+..+        |...+....+.+.  +.++-+...+.. ..
T Consensus        43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~-i~  121 (370)
T PRK05600         43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER-LT  121 (370)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee-cC
Confidence            69999999999999999999996 799998774433333322        2211222222222  234444444321 11


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      .+.+      .+.+..-.+|||++.. ...-..+.+.+.+.++.++.+.+.|
T Consensus       122 ~~~~------~~~~~~~DlVid~~Dn-~~~r~~in~~~~~~~iP~v~~~~~g  166 (370)
T PRK05600        122 AENA------VELLNGVDLVLDGSDS-FATKFLVADAAEITGTPLVWGTVLR  166 (370)
T ss_pred             HHHH------HHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEec
Confidence            1111      1122234577776654 4455566667777777777776554

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.86  E-value=0.0093  Score=53.61  Aligned_cols=114  Identities=17%  Similarity=0.086  Sum_probs=69.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-H----HHHHHCCCcccCC--HH-----HHhhhCCeEEEecC---C
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-C----DELVAHGATVGGS--PA-----EVIKKCTITIGMLA---D   66 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~----~~l~~~g~~~~~s--~~-----~~~~~advvi~~~p---~   66 (226)
                      ||.|||+|..|...|+.|.+.|++|.++|+++.. .    +.+...|++....  ..     +...+.|.|+....   +
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            7899999999999999999999999999976542 2    2355667655321  11     35667898887432   2


Q ss_pred             HHHHHHHhh-c-----ccccc-cccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255           67 PAAALSVVF-D-----KGGVL-EQICPGKGYIDMST-VDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        67 ~~~~~~v~~-~-----~~~l~-~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~  115 (226)
                      ...+..... |     ..++. ....+..+|--+.| ....++.-++..+...|...
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~  138 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLNA  138 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCe
Confidence            222322211 0     00111 12223345544444 56777777888888777653

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.85  E-value=0.0089  Score=52.51  Aligned_cols=114  Identities=14%  Similarity=0.155  Sum_probs=68.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|..|+.++.+|++.|. +++++|++.-....+..+        |...+....+.+.  +.++-+...+..- .
T Consensus       137 ~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~-~  215 (376)
T PRK08762        137 RVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERV-T  215 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccC-C
Confidence            69999999999999999999997 699999874333333322        2111222222222  2344333332210 0


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      .+.+   .   +.+..-.+|||++.. +..-..+.+.+.+.++.++.+.+.|.
T Consensus       216 ~~~~---~---~~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g~  261 (376)
T PRK08762        216 SDNV---E---ALLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFRF  261 (376)
T ss_pred             hHHH---H---HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeccC
Confidence            1111   1   122234678887765 34455678888889999999877763

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.84  E-value=0.014  Score=52.27  Aligned_cols=123  Identities=13%  Similarity=0.078  Sum_probs=73.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchh--HHHHHHCCCccc-C-CHHHHhhhCCeEEEec--C-CHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSK--CDELVAHGATVG-G-SPAEVIKKCTITIGML--A-DPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~--~~~l~~~g~~~~-~-s~~~~~~~advvi~~~--p-~~~~~~   71 (226)
                      ++|.|||+|..|.+.++.|.+.  |++|+++|..+..  .+.+.. |+... . ...+.+.++|+|+..-  | +.+.++
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~   86 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ   86 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence            3689999999999999999987  5899999975432  234543 76652 1 1234457899877653  2 223333


Q ss_pred             HHhh-c-----ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           72 SVVF-D-----KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        72 ~v~~-~-----~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      .... |     +.+++..+.+.++|--+.| ....++.-++..+...|..+.-+.-.|.|
T Consensus        87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~  146 (438)
T PRK04663         87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP  146 (438)
T ss_pred             HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHH
Confidence            3221 1     1122222223455555555 56667777778888777654433334444

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.84  E-value=0.031  Score=50.07  Aligned_cols=115  Identities=12%  Similarity=0.034  Sum_probs=71.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh--HHHHHH--CCCcccC--CHHHHhhhCCeEEEec---CCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVA--HGATVGG--SPAEVIKKCTITIGML---ADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~--~~~l~~--~g~~~~~--s~~~~~~~advvi~~~---p~~~~~~   71 (226)
                      ++|.|+|.|..|...|+.|.+.|++|.++|.++..  .+++.+  .|+....  ...+...++|+||...   |+.+.++
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~   85 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIE   85 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHH
Confidence            47999999999999999999999999999976543  344544  3655421  1233446789988864   2223343


Q ss_pred             HHhh-c-----ccccc-cccC--CCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255           72 SVVF-D-----KGGVL-EQIC--PGKGYIDMST-VDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        72 ~v~~-~-----~~~l~-~~l~--~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~  115 (226)
                      .... +     +.+++ ..++  +..+|.-+.| ....++.-++..+...|...
T Consensus        86 ~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~  139 (445)
T PRK04308         86 AFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT  139 (445)
T ss_pred             HHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence            3321 1     11121 1121  2345544444 66777777888888777653

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.83  E-value=0.0017  Score=50.92  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=49.2

Q ss_pred             eEEEEecChhHHHHHHH-HH-hCCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255            2 EVGFLGLGIMGKAISMN-LL-RNGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV   74 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~-l~-~~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~   74 (226)
                      ++.+||+|++|++++.. +. ++|+++. ++|.+++++...... -+.-.+++++.++  +.|+.++|+|.. ..+++.
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~-~AQ~va  163 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE-HAQEVA  163 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH-HHHHHH
Confidence            68899999999999865 33 5677754 789999876543322 1222455666666  578999999974 344433

>PRK14852 hypothetical protein; Provisional

Probab=96.82  E-value=0.0084  Score=58.14  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=72.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|+|||+|..|+.++.+|+..|. +++++|.+.=....+..+        |...+....+.+.  +.++=|.+.+..- .
T Consensus       334 rVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I-~  412 (989)
T PRK14852        334 RVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGV-A  412 (989)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCC-C
Confidence            79999999999999999999996 588887654433334332        2222223333333  3555555553311 1


Q ss_pred             HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      .+.+   +.+   +..-.+|||+... .......+.+.+.+.++.++.+.+.|..
T Consensus       413 ~en~---~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~  461 (989)
T PRK14852        413 AETI---DAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS  461 (989)
T ss_pred             HHHH---HHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence            1112   122   2234688998875 3445566777788889999998877643

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.82  E-value=0.0026  Score=54.88  Aligned_cols=62  Identities=23%  Similarity=0.341  Sum_probs=47.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHH-HHHCCCccc----CCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-LVAHGATVG----GSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-l~~~g~~~~----~s~~~~~~~advvi~   62 (226)
                      ++|||||-|..|+-|+..-.+.|++|++.|.+++.... +....+...    ..+.++++.||+|-.
T Consensus         2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            57999999999999999999999999999988875433 333322222    246788889998743

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=96.81  E-value=0.0022  Score=53.11  Aligned_cols=79  Identities=16%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc---EEecC
Q 027255           43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH---FLEAP  119 (226)
Q Consensus        43 g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~---~ld~p  119 (226)
                      |+.++++..|+++++|++++.+|.......++   +.+.++++.|.+|.+++|++|...-.+-+.+.++.+.   |-.+.
T Consensus       128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa  204 (342)
T PRK00961        128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA  204 (342)
T ss_pred             CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence            46778899999999999999999887666777   7788999999999999999887776666666655543   33344


Q ss_pred             CCCCh
Q 027255          120 VSGSK  124 (226)
Q Consensus       120 v~g~~  124 (226)
                      |-|.+
T Consensus       205 VPgt~  209 (342)
T PRK00961        205 VPEMK  209 (342)
T ss_pred             CCCCC
Confidence            54544

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=96.81  E-value=0.013  Score=49.44  Aligned_cols=109  Identities=20%  Similarity=0.267  Sum_probs=66.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|+|+|.+|..+|++|+..|. +++++|.+.-....+..+        |-..+....+-++  +.++-+...... ..
T Consensus        21 ~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~-~~   99 (286)
T cd01491          21 NVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP-LT   99 (286)
T ss_pred             cEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc-CC
Confidence            69999999999999999999996 599999776544444332        1111111111111  244444444321 11


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      .+.+          ..-.+||++. ..+.....+.+.++++++.|+.+-+.|
T Consensus       100 ~~~l----------~~fdvVV~~~-~~~~~~~~in~~c~~~~ipfI~a~~~G  140 (286)
T cd01491         100 TDEL----------LKFQVVVLTD-ASLEDQLKINEFCHSPGIKFISADTRG  140 (286)
T ss_pred             HHHH----------hcCCEEEEec-CCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            1222          2234666664 467777888888888888887775443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.81  E-value=0.0064  Score=51.36  Aligned_cols=74  Identities=22%  Similarity=0.286  Sum_probs=57.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~----G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|||- ...|.+++..|.++    +..|++++...              .++.+.+++||+||+++..+..+..   
T Consensus       158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~---  220 (293)
T PRK14185        158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEFVKA---  220 (293)
T ss_pred             CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCccCH---
Confidence            36889987 56899999999987    57898886432              3577888999999999988654321   


Q ss_pred             cccccccccCCCcEEEecCCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~   97 (226)
                            +.+++|.+|||.+...
T Consensus       221 ------~~vk~gavVIDvGin~  236 (293)
T PRK14185        221 ------DMVKEGAVVIDVGTTR  236 (293)
T ss_pred             ------HHcCCCCEEEEecCcc
Confidence                  4567999999988753

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.80  E-value=0.0042  Score=51.11  Aligned_cols=66  Identities=24%  Similarity=0.249  Sum_probs=47.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--CCcc-----cC---CHHHHh-hhCCeEEEecCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATV-----GG---SPAEVI-KKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--g~~~-----~~---s~~~~~-~~advvi~~~p~   66 (226)
                      |+|.|+|. |.+|+.+++.|+++||+|++..|++++...+...  ++.+     .+   +..+.+ ...|+||.+.+.
T Consensus        18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~   95 (251)
T PLN00141         18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF   95 (251)
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence            57999995 9999999999999999999999998876554322  2221     11   122344 468988877643

>PRK07411 hypothetical protein; Validated

Probab=96.79  E-value=0.0086  Score=52.89  Aligned_cols=114  Identities=13%  Similarity=0.131  Sum_probs=64.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|..|..++++|+..|. +++++|.+.=....+..+        |-..+....+.+.  +.++-+...+..-.-
T Consensus        40 ~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~  119 (390)
T PRK07411         40 SVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSS  119 (390)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCH
Confidence            79999999999999999999996 588888764433333322        2222222222222  234444443321111


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      ...       .+.+..-.+|||++-. +..-..+.+.+.+.++.++.+.++|.
T Consensus       120 ~~~-------~~~~~~~D~Vvd~~d~-~~~r~~ln~~~~~~~~p~v~~~~~g~  164 (390)
T PRK07411        120 ENA-------LDILAPYDVVVDGTDN-FPTRYLVNDACVLLNKPNVYGSIFRF  164 (390)
T ss_pred             HhH-------HHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEccC
Confidence            111       1112234567776553 34445566666777777777766665

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=96.77  E-value=0.0024  Score=53.04  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=57.4

Q ss_pred             CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        43 g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      |+.++++..|+++++|++++.+|.......++   +.+.+.++.|.+|.+++|++|...-.+-+.+.++.+.
T Consensus       126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~Dvg  194 (340)
T TIGR01723       126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLN  194 (340)
T ss_pred             CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCC
Confidence            46778899999999999999999887666777   7788999999999999999888776666666655543

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PRK08309 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.013  Score=46.05  Aligned_cols=101  Identities=19%  Similarity=0.120  Sum_probs=60.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |++.|+|...||..+++.|++.|++|.+.+|++++.+.+...-.    .    ..+...+-.-+.+...+..++   ++.
T Consensus         1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~----~----~~~i~~~~~Dv~d~~sv~~~i---~~~   69 (177)
T PRK08309          1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKREST----T----PESITPLPLDYHDDDALKLAI---KST   69 (177)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhh----c----CCcEEEEEccCCCHHHHHHHH---HHH
Confidence            78999998778888999999999999999999887766543100    0    011222223455666677666   444


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      .....+-.+++..  +.....+.+.+.+++.|+.
T Consensus        70 l~~~g~id~lv~~--vh~~~~~~~~~~~~~~gv~  101 (177)
T PRK08309         70 IEKNGPFDLAVAW--IHSSAKDALSVVCRELDGS  101 (177)
T ss_pred             HHHcCCCeEEEEe--ccccchhhHHHHHHHHccC
Confidence            3333222244433  2333455566666666654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.76  E-value=0.006  Score=57.45  Aligned_cols=65  Identities=25%  Similarity=0.296  Sum_probs=49.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~~--------s~~   51 (226)
                      ++|.|||.|..|...|..|.+.||+|++|++.+.                     ..+.+.+.|+.+..        +..
T Consensus       328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~  407 (654)
T PRK12769        328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLE  407 (654)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHH
Confidence            4799999999999999999999999999998643                     23345555654321        344


Q ss_pred             HHhhhCCeEEEecC
Q 027255           52 EVIKKCTITIGMLA   65 (226)
Q Consensus        52 ~~~~~advvi~~~p   65 (226)
                      +...+.|.||+++-
T Consensus       408 ~~~~~~DavilAtG  421 (654)
T PRK12769        408 SLLEDYDAVFVGVG  421 (654)
T ss_pred             HHHhcCCEEEEeCC
Confidence            55567999999874

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.76  E-value=0.006  Score=54.45  Aligned_cols=110  Identities=15%  Similarity=0.087  Sum_probs=66.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEE--------Ec---CCchhHHHH---HHC-------------CCcccCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTV--------WN---RTLSKCDEL---VAH-------------GATVGGSPAEV   53 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~--------~d---r~~~~~~~l---~~~-------------g~~~~~s~~~~   53 (226)
                      .+|.|-|+|++|...|+.|.+.|.+|+.        ||   .+.++++.+   ...             +++..+ .+++
T Consensus       229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~-~~~~  307 (445)
T PRK14030        229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA-GKKP  307 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC-Cccc
Confidence            3799999999999999999999999888        88   666663322   211             222222 2333


Q ss_pred             h-hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           54 I-KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        54 ~-~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      + ..|||.+-|--......+..   +.+..  .+=++|+...+. |.+ .+..+.+.++|+.|+..
T Consensus       308 ~~~~cDVliPcAl~n~I~~~na---~~l~~--~~ak~V~EgAN~-p~t-~eA~~iL~~rGI~~vPD  366 (445)
T PRK14030        308 WEQKVDIALPCATQNELNGEDA---DKLIK--NGVLCVAEVSNM-GCT-AEAIDKFIAAKQLFAPG  366 (445)
T ss_pred             eeccccEEeeccccccCCHHHH---HHHHH--cCCeEEEeCCCC-CCC-HHHHHHHHHCCCEEeCc
Confidence            2 35888887764322222222   12211  023566666665 533 34567888899887643

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.75  E-value=0.038  Score=44.56  Aligned_cols=109  Identities=17%  Similarity=0.120  Sum_probs=71.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc-hhHHHHHHCC-Cccc---CCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHG-ATVG---GSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~-~~~~~l~~~g-~~~~---~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|||.|..|..=++.|++.|.+|+++.... .....+...+ +...   -.+.+ ...+++||.+++++..-+.+..
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ln~~i~~   91 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEELNERIAK   91 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999999999998766 4555555443 2221   12223 3459999999987543333321


Q ss_pred             c--c----------cc-----cccccCCCcEEEecCCC--CHHHHHHHHHHHHh
Q 027255           76 D--K----------GG-----VLEQICPGKGYIDMSTV--DHETSIKISRAITS  110 (226)
Q Consensus        76 ~--~----------~~-----l~~~l~~g~ivvd~st~--~~~~~~~l~~~~~~  110 (226)
                      .  +          ..     +-....++.+.|-.||.  +|..++.+-+.+.+
T Consensus        92 ~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~  145 (210)
T COG1648          92 AARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEA  145 (210)
T ss_pred             HHHHhCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHHHHHH
Confidence            0  0          00     11123456677777774  69888888887765

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.71  E-value=0.0037  Score=53.78  Aligned_cols=64  Identities=19%  Similarity=0.219  Sum_probs=44.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCchh--HHH----HHH------CCCcccCCHHHHhhhCCeEE
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CDE----LVA------HGATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~~~--~~~----l~~------~g~~~~~s~~~~~~~advvi   61 (226)
                      ||+|||+ |.+|+.+|..|...+.       ++.++|+++..  ++.    +..      .++....+..+.++++|+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            6999999 9999999999997553       59999996542  211    111      11222335567889999999


Q ss_pred             EecC
Q 027255           62 GMLA   65 (226)
Q Consensus        62 ~~~p   65 (226)
                      ++.-
T Consensus        81 itAG   84 (324)
T TIGR01758        81 LVGA   84 (324)
T ss_pred             EcCC
Confidence            8753

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=96.68  E-value=0.032  Score=46.72  Aligned_cols=110  Identities=20%  Similarity=0.147  Sum_probs=68.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEE--cCCch--hHHHHHHCCCcc------cCCHHHHhhh-CC-eEEEecCCHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVW--NRTLS--KCDELVAHGATV------GGSPAEVIKK-CT-ITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~--dr~~~--~~~~l~~~g~~~------~~s~~~~~~~-ad-vvi~~~p~~~   68 (226)
                      +|.|.|+ |.||+..++.+.+.++++...  ++...  ....+...++.+      ..++.++.+. +| ++|=.+ .|.
T Consensus         2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~   80 (275)
T TIGR02130         2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS   80 (275)
T ss_pred             eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence            7889997 999999999998888887763  43221  222333335555      6778888776 89 555444 556


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                      .+.+.+      ..++..+..+|..+|. +....+++.   ...++..+=+|-+
T Consensus        81 ~~~~n~------~~~~~~gv~~ViGTTG~~~~~~~~l~---~~~~i~~l~apNf  125 (275)
T TIGR02130        81 AVNDNA------AFYGKHGIPFVMGTTGGDREALAKLV---ADAKHPAVIAPNM  125 (275)
T ss_pred             HHHHHH------HHHHHCCCCEEEcCCCCCHHHHHHHH---HhcCCCEEEECcc
Confidence            666555      2344466666666664 555554443   3334666666644

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.67  E-value=0.014  Score=47.74  Aligned_cols=40  Identities=28%  Similarity=0.355  Sum_probs=35.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      |+|-|+|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~   41 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK   41 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            78999985 99999999999999999999999988776654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.67  E-value=0.0073  Score=56.73  Aligned_cols=66  Identities=18%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~--------~s~~   51 (226)
                      ++|.|||.|..|...|..|.+.||+|++|++.+.                     ..+.+.+.|+.+.        -+..
T Consensus       311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~  390 (639)
T PRK12809        311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFS  390 (639)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHH
Confidence            4799999999999999999999999999998763                     3445566665431        2445


Q ss_pred             HHhhhCCeEEEecCC
Q 027255           52 EVIKKCTITIGMLAD   66 (226)
Q Consensus        52 ~~~~~advvi~~~p~   66 (226)
                      ++....|.||+++-.
T Consensus       391 ~l~~~~DaV~latGa  405 (639)
T PRK12809        391 DLTSEYDAVFIGVGT  405 (639)
T ss_pred             HHHhcCCEEEEeCCC
Confidence            666779999998744

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.66  E-value=0.011  Score=52.76  Aligned_cols=109  Identities=15%  Similarity=0.016  Sum_probs=64.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEE-Ec----------CCchhHH---HHHHC------------CCcccCCHHHH-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WN----------RTLSKCD---ELVAH------------GATVGGSPAEV-   53 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~-~d----------r~~~~~~---~l~~~------------g~~~~~s~~~~-   53 (226)
                      ++|.|.|.|++|...|+.|.+.|.+|++ .|          .+.+++.   ++...            ++... +.++. 
T Consensus       229 ~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~~~  307 (444)
T PRK14031        229 KVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGARPW  307 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcccc
Confidence            4799999999999999999999999886 56          4544433   11111            22222 23333 


Q ss_pred             hhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        54 ~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      -..||+++-|.-......+..   ..+.   .++..+|..+...|.+.+ -.+.+.++|+.++.
T Consensus       308 ~~~cDIliPaAl~n~I~~~na---~~l~---a~g~~~V~EgAN~P~t~e-A~~~L~~rgI~~~P  364 (444)
T PRK14031        308 GEKGDIALPSATQNELNGDDA---RQLV---ANGVIAVSEGANMPSTPE-AIKVFQDAKILYAP  364 (444)
T ss_pred             cCCCcEEeecccccccCHHHH---HHHH---hcCCeEEECCCCCCCCHH-HHHHHHHCCcEEeC
Confidence            246898887764432222222   1221   235555555554465554 34567788887753

>PLN02427 UDP-apiose/xylose synthase

Probab=96.65  E-value=0.0048  Score=54.11  Aligned_cols=64  Identities=19%  Similarity=0.321  Sum_probs=47.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCC-------Ccc-------cCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATV-------GGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~-------~~s~~~~~~~advvi~~~   64 (226)
                      |||.|.|. |.+|+.+++.|+++ |++|++++|+.++...+...+       ++.       ..+..++++++|+||=+.
T Consensus        15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA   94 (386)
T PLN02427         15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA   94 (386)
T ss_pred             cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence            78999985 99999999999998 599999999877665544321       111       123455677899988765

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.64  E-value=0.036  Score=49.55  Aligned_cols=122  Identities=11%  Similarity=0.049  Sum_probs=71.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh--HHHHHHCCCcccC--CHHHHhhhCCeEEEec---CCHHHHHHHh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVGG--SPAEVIKKCTITIGML---ADPAAALSVV   74 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~--~~~l~~~g~~~~~--s~~~~~~~advvi~~~---p~~~~~~~v~   74 (226)
                      +|.|||+|..|.+.++.|.+.|++|+++|..+..  .+.+. .|+....  ...+.++..|+||..-   ++.+.+.+..
T Consensus         8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~   86 (438)
T PRK03806          8 KVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAAA   86 (438)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence            6999999999999999999999999999975443  23443 3665432  2334456788665543   1222333322


Q ss_pred             h-c-----ccccccccCCCcEEEec-CCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           75 F-D-----KGGVLEQICPGKGYIDM-STVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        75 ~-~-----~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      . |     +.+++..+.+..+|--+ |.....++.-+++.+...|..+.-+...|.|
T Consensus        87 ~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p  143 (438)
T PRK03806         87 DAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLP  143 (438)
T ss_pred             HCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchh
Confidence            1 1     01122222233344444 4467777888888888877654433333333

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.63  E-value=0.008  Score=50.61  Aligned_cols=74  Identities=19%  Similarity=0.248  Sum_probs=57.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh----CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLR----NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~----~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|||- ...|.+++..|.+    .+..|++++.+.              .++.+.+++||+||.++..+..+..   
T Consensus       158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~li~~---  220 (286)
T PRK14184        158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRFVTA---  220 (286)
T ss_pred             CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCCH---
Confidence            36889987 5689999999998    678899887543              3577888999999999977554322   


Q ss_pred             cccccccccCCCcEEEecCCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~   97 (226)
                            +.+++|.++||.+...
T Consensus       221 ------~~vk~GavVIDVGi~~  236 (286)
T PRK14184        221 ------DMVKPGAVVVDVGINR  236 (286)
T ss_pred             ------HHcCCCCEEEEeeeec
Confidence                  3457999999987543

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.62  E-value=0.019  Score=55.49  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=71.1

Q ss_pred             eEEEEecChhHHHH-HHHHHhCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhhCCeEEEec--C-CHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKAI-SMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~-A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~~~~~~advvi~~~--p-~~~~~~~v~~   75 (226)
                      +|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+|+..-  | +...++....
T Consensus         6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~   85 (809)
T PRK14573          6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS   85 (809)
T ss_pred             eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence            49999999999997 9999999999999997543 34567777876532 2335566789887653  2 2233333221


Q ss_pred             -c-----ccccccccCCC-cEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255           76 -D-----KGGVLEQICPG-KGYIDMST-VDHETSIKISRAITSKGG  113 (226)
Q Consensus        76 -~-----~~~l~~~l~~g-~ivvd~st-~~~~~~~~l~~~~~~~g~  113 (226)
                       |     +.+++..+.+. .+|.-+.| ....++.-++..+...|.
T Consensus        86 ~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~  131 (809)
T PRK14573         86 RGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK  131 (809)
T ss_pred             CCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence             1     11222222233 45544544 566777777888887775

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.61  E-value=0.0036  Score=53.78  Aligned_cols=64  Identities=17%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCC--CeEEEEcCCchhHH--HHHHC--CCcc--cCC---HHHHhhhCCeEEEecC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCD--ELVAH--GATV--GGS---PAEVIKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~--~l~~~--g~~~--~~s---~~~~~~~advvi~~~p   65 (226)
                      ||+|||+ |.+|+.+|..|+..+  .++.++|++....+  .+...  ...+  .++   ..++++++|+|+++.-
T Consensus        10 KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325         10 KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            7999999 999999999999655  58999999433222  22221  1122  222   2678899999998864

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.61  E-value=0.0063  Score=52.11  Aligned_cols=89  Identities=20%  Similarity=0.188  Sum_probs=56.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCe---EEEE--cCCchhH-HHHHHCCCcccC--CHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVW--NRTLSKC-DELVAHGATVGG--SPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~---V~~~--dr~~~~~-~~l~~~g~~~~~--s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      +||||+|+ |..|+.|.+.|.+..+.   +.++  .|+..+- -++......+-.  ......+++|++|.|.+.+ ..+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~-~s~   80 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGS-VSK   80 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchH-HHH
Confidence            58999986 99999999999986542   4444  4444433 344433233222  1223345799999999874 345


Q ss_pred             HHhhcccccccccCCCcEEEecCCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      ++.   .   ...+.|.+|||.|+.
T Consensus        81 ~~~---p---~~~~~G~~VIdnsSa   99 (334)
T COG0136          81 EVE---P---KAAEAGCVVIDNSSA   99 (334)
T ss_pred             HHH---H---HHHHcCCEEEeCCcc
Confidence            555   2   234578999998853

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.56  E-value=0.052  Score=44.14  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHCC-CcccC---CHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG---SPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~---s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|||.|.++..=++.|++.|.+|+++.+... .+..+...| +++..   ++ +.++++++||.++.+...-+.+..
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaATdD~~vN~~I~~  104 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIATDDEKLNNKIRK  104 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECCCCHHHHHHHHH
Confidence            3689999999999999999999999999976543 344454433 32211   22 345789999999876443332221


Q ss_pred             c--ccc-c-------------cc-ccCCCcEEEecCC--CCHHHHHHHHHHHHh
Q 027255           76 D--KGG-V-------------LE-QICPGKGYIDMST--VDHETSIKISRAITS  110 (226)
Q Consensus        76 ~--~~~-l-------------~~-~l~~g~ivvd~st--~~~~~~~~l~~~~~~  110 (226)
                      -  ..+ +             .+ ....|.+.|-.||  .+|..++.+.+.+.+
T Consensus       105 ~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~  158 (223)
T PRK05562        105 HCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKN  158 (223)
T ss_pred             HHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHH
Confidence            0  001 0             11 1334566666665  488888888887764

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.0063  Score=49.28  Aligned_cols=131  Identities=15%  Similarity=0.141  Sum_probs=76.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |.++|||.|..|+....+-...++... +-.|++++++.+.+.-+-...+.+...+-.+++|+.+|+. .+..+.   . 
T Consensus        11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va---a-   85 (289)
T COG5495          11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA---A-   85 (289)
T ss_pred             eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH---H-
Confidence            569999999999985555444444433 3378888888877653323334444445568899999885 444444   1 


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-C---CCCChHhhc--cCcEEEEeccCC
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-P---VSGSKQPAE--TGQLVILSAGEK  140 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-p---v~g~~~~a~--~g~~~~~~gg~~  140 (226)
                       .....||++++.||-....   .|-..+.+.|+.-..- |   .+|.+....  .++.....-+|+
T Consensus        86 -~~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~  148 (289)
T COG5495          86 -TSLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADD  148 (289)
T ss_pred             -hcccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccc
Confidence             1234689999999875332   3444555666653333 2   334454444  344433333443

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.54  E-value=0.0055  Score=53.48  Aligned_cols=87  Identities=20%  Similarity=0.339  Sum_probs=52.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHH-hCCCe---EEEEcCCc--hhHHHHHHCCCcccC--CHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLL-RNGFK---VTVWNRTL--SKCDELVAHGATVGG--SPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~-~~G~~---V~~~dr~~--~~~~~l~~~g~~~~~--s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      |+|+|||+ |..|..|.+.++ ...++   +..+....  .+.-.+......+..  +. +.++++|++|.|+|.. ..+
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~-~s~   79 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGD-YTN   79 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHH-HHH
Confidence            58999998 999999998554 45666   66654321  122122222122222  23 3457899999999884 455


Q ss_pred             HHhhcccccccccCCC--cEEEecCC
Q 027255           72 SVVFDKGGVLEQICPG--KGYIDMST   95 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g--~ivvd~st   95 (226)
                      ++.   ..+   .+.|  .+|||.|+
T Consensus        80 ~~~---~~~---~~aG~~~~VID~Ss   99 (369)
T PRK06598         80 EVY---PKL---RAAGWQGYWIDAAS   99 (369)
T ss_pred             HHH---HHH---HhCCCCeEEEECCh
Confidence            554   222   2467  67999984

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.53  E-value=0.031  Score=50.36  Aligned_cols=122  Identities=17%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCc-ccCCHHHHhhhCCeEEEec--C-CHHHHHHHhh-
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT-VGGSPAEVIKKCTITIGML--A-DPAAALSVVF-   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~-~~~s~~~~~~~advvi~~~--p-~~~~~~~v~~-   75 (226)
                      +|+|+|+|.-|.+.++.|. .|.+|+++|.++.....+.+. ... ......+.+.++|+||..-  | +.+.++.... 
T Consensus         8 ~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~~~   86 (454)
T PRK01368          8 KIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAKNF   86 (454)
T ss_pred             EEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHHHC
Confidence            7999999999999999998 499999999654433322221 111 1122234456789877653  2 2233332211 


Q ss_pred             -----cccccc-cccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           76 -----DKGGVL-EQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        76 -----~~~~l~-~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                           ++-+++ ...+...+|--+.| ....++.-+++.+...|..+.-+...|.|
T Consensus        87 gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p  142 (454)
T PRK01368         87 NIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVP  142 (454)
T ss_pred             CCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHH
Confidence                 111222 22222245544544 56777777888888877765544444544

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=96.53  E-value=0.0037  Score=49.23  Aligned_cols=65  Identities=14%  Similarity=0.251  Sum_probs=44.3

Q ss_pred             eEEEEecChhHHHHH-H-HHHhC----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhhCCeEEEe
Q 027255            2 EVGFLGLGIMGKAIS-M-NLLRN----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIGM   63 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A-~-~l~~~----G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~~~~~~advvi~~   63 (226)
                      ||+|||.|+.-.+.- . .+...    +-++.++|+++++.+....        .|    +..+++.+++++++|.||.+
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~   80 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ   80 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence            799999999877742 2 22221    2479999999998774321        23    34588999999999999998


Q ss_pred             cCC
Q 027255           64 LAD   66 (226)
Q Consensus        64 ~p~   66 (226)
                      .-.
T Consensus        81 irv   83 (183)
T PF02056_consen   81 IRV   83 (183)
T ss_dssp             --T
T ss_pred             eee
Confidence            753

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.53  E-value=0.0072  Score=49.91  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEE--------cCCchhHHHHHH---C-CC--cccC----------CH-HHHh-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW--------NRTLSKCDELVA---H-GA--TVGG----------SP-AEVI-   54 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~--------dr~~~~~~~l~~---~-g~--~~~~----------s~-~~~~-   54 (226)
                      +++.|-|.|++|...|+.|.+.|..|...        |.+.-..+.+.+   . +.  ....          +. ++.+ 
T Consensus        33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~  112 (244)
T PF00208_consen   33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILS  112 (244)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccccc
Confidence            47899999999999999999999886654        655444555443   2 32  2111          12 1444 


Q ss_pred             hhCCeEEEecCCHHHHHHHhhcccccccccCCC-cEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        55 ~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g-~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ..||+++.|--......+.+   .   ..++++ ++|+...+. |-+.... +.+.++|+.++.-
T Consensus       113 ~~~DiliP~A~~~~I~~~~~---~---~~i~~~akiIvegAN~-p~t~~a~-~~L~~rGI~viPD  169 (244)
T PF00208_consen  113 VDCDILIPCALGNVINEDNA---P---SLIKSGAKIIVEGANG-PLTPEAD-EILRERGILVIPD  169 (244)
T ss_dssp             SSSSEEEEESSSTSBSCHHH---C---HCHHTT-SEEEESSSS-SBSHHHH-HHHHHTT-EEE-H
T ss_pred             ccccEEEEcCCCCeeCHHHH---H---HHHhccCcEEEeCcch-hccHHHH-HHHHHCCCEEEcc
Confidence            47999999854323222332   1   133334 456665543 2233333 3788999887654

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.52  E-value=0.014  Score=49.52  Aligned_cols=74  Identities=20%  Similarity=0.274  Sum_probs=56.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~----G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|||- ...|.++|..|.++    +..|++++...              .++.+..++||+||+++-.+..+..   
T Consensus       158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~~---  220 (297)
T PRK14167        158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPELIDG---  220 (297)
T ss_pred             CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCH---
Confidence            36889987 56899999999987    67899886432              3567888999999999977553221   


Q ss_pred             cccccccccCCCcEEEecCCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~   97 (226)
                            +.+++|.+|||.+...
T Consensus       221 ------~~ik~gaiVIDvGin~  236 (297)
T PRK14167        221 ------SMLSEGATVIDVGINR  236 (297)
T ss_pred             ------HHcCCCCEEEEccccc
Confidence                  4567999999988654

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.52  E-value=0.012  Score=49.92  Aligned_cols=74  Identities=18%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh----CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLR----NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~----~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|||- ...|.+++..|.+    .+..|++++.+.              .++.+.+++||+||.+++.+..    + 
T Consensus       160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~~l----i-  220 (295)
T PRK14174        160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKARF----I-  220 (295)
T ss_pred             CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCccCc----c-
Confidence            36889987 5689999999987    678888887653              2467888999999999977532    2 


Q ss_pred             cccccccccCCCcEEEecCCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~   97 (226)
                      .    .+.+++|.++||.+...
T Consensus       221 ~----~~~vk~GavVIDVgi~~  238 (295)
T PRK14174        221 T----ADMVKPGAVVIDVGINR  238 (295)
T ss_pred             C----HHHcCCCCEEEEeeccc
Confidence            1    13458999999987643

>PLN02775 Probable dihydrodipicolinate reductase

Probab=96.50  E-value=0.029  Score=47.24  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEE-EcCCchh--HH-HHHHCCCccc--CCHHHHhh-----hCCeEEEecCCHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTV-WNRTLSK--CD-ELVAHGATVG--GSPAEVIK-----KCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~-~dr~~~~--~~-~l~~~g~~~~--~s~~~~~~-----~advvi~~~p~~~   68 (226)
                      ++|.|.|+ |.||+..++.+.+.++++.. .|+.+.-  .. .+...++...  .++++++.     .+|.|++=...++
T Consensus        12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~   91 (286)
T PLN02775         12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPD   91 (286)
T ss_pred             CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCChH
Confidence            47899997 99999999999998888765 4654422  11 2222255555  77777772     3784444444666


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                      .+.+.+   +   .++..|..+|..||. +++   ++.+...++++..+=+|-+
T Consensus        92 a~~~~~---~---~~~~~g~~~VvGTTG~~~e---~l~~~~~~~~i~vv~apNf  136 (286)
T PLN02775         92 AVNDNA---E---LYCKNGLPFVMGTTGGDRD---RLLKDVEESGVYAVIAPQM  136 (286)
T ss_pred             HHHHHH---H---HHHHCCCCEEEECCCCCHH---HHHHHHhcCCccEEEECcc
Confidence            666655   2   334456666666664 444   3334444456666666644

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=96.46  E-value=0.0073  Score=52.11  Aligned_cols=63  Identities=22%  Similarity=0.384  Sum_probs=45.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHC-CCcc-----c---CCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV-----G---GSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~-g~~~-----~---~s~~~~~~~advvi~~   63 (226)
                      |+|.|.|. |.+|+.+++.|++. ||+|++++|+.++...+... ++.+     .   ....++++++|+||-+
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~   75 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL   75 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence            58999997 99999999999986 79999999987655444322 2221     1   1233456789998854

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.46  E-value=0.015  Score=52.63  Aligned_cols=66  Identities=21%  Similarity=0.265  Sum_probs=49.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~~--------s~~   51 (226)
                      .+|.|||.|..|...|..|.+.|++|++|++.+.                     ..+.+.+.|+....        ...
T Consensus       142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~  221 (467)
T TIGR01318       142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLD  221 (467)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHH
Confidence            3699999999999999999999999999988752                     24455666754321        234


Q ss_pred             HHhhhCCeEEEecCC
Q 027255           52 EVIKKCTITIGMLAD   66 (226)
Q Consensus        52 ~~~~~advvi~~~p~   66 (226)
                      +.....|.||+++-.
T Consensus       222 ~~~~~~D~vilAtGa  236 (467)
T TIGR01318       222 DLLEDYDAVFLGVGT  236 (467)
T ss_pred             HHHhcCCEEEEEeCC
Confidence            445579999998854

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06182 short chain dehydrogenase; Validated

Probab=96.46  E-value=0.024  Score=47.02  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=34.6

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      +|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+..
T Consensus         5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~   45 (273)
T PRK06182          5 VALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS   45 (273)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            5778885 999999999999999999999999888766543

>PRK05865 hypothetical protein; Provisional

Probab=96.46  E-value=0.0068  Score=58.40  Aligned_cols=62  Identities=16%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-------ccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-------VGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-------~~~s~~~~~~~advvi~~~p   65 (226)
                      |||.|.|. |.+|+.+++.|.++||+|++++|+....  + ..++.       -..+..++++++|+||-+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~--~-~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa   70 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS--W-PSSADFIAADIRDATAVESAMTGADVVAHCAW   70 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh--c-ccCceEEEeeCCCHHHHHHHHhCCCEEEECCC
Confidence            89999985 9999999999999999999999875321  1 11211       12244556778999998864

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.44  E-value=0.0054  Score=52.22  Aligned_cols=61  Identities=13%  Similarity=0.241  Sum_probs=45.6

Q ss_pred             EEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHH----HC------CCcccCCHHHHhhhCCeEEEecC
Q 027255            5 FLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH------GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         5 vIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~----~~------g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|.+|..+|..|+..+.  ++.++|++.++++...    ..      ...+..+.-+.+++||+|+++.-
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag   73 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG   73 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence            69999999999999998875  6999999887654322    21      23444455678899999999763

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.44  E-value=0.038  Score=45.26  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCC---H
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLAD---P   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~---~   67 (226)
                      +|.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+        |-..+....+-+.  +.++-+...+.   +
T Consensus        13 ~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~   92 (231)
T cd00755          13 HVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTP   92 (231)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCH
Confidence            69999999999999999999996 789998765433333222        2111111222222  23444444432   1


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      +.....+       .  ..-.+|||+.-. +.....+.+.+.+.++.++.+--.|
T Consensus        93 ~~~~~l~-------~--~~~D~VvdaiD~-~~~k~~L~~~c~~~~ip~I~s~g~g  137 (231)
T cd00755          93 DNSEDLL-------G--GDPDFVVDAIDS-IRAKVALIAYCRKRKIPVISSMGAG  137 (231)
T ss_pred             hHHHHHh-------c--CCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            1122222       1  123578887554 4455678888888899888874333

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=96.44  E-value=0.0082  Score=53.59  Aligned_cols=65  Identities=15%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             CeEEEEecChh-HHHHHHHHHhC-----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~m-G~~~A~~l~~~-----G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~~~~~~advvi~   62 (226)
                      |||+|||.|+. ...+.+.|+..     +-+|.++|.++++.+....        .|    +..+++.++++++||.||.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~   80 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN   80 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence            79999999984 33456666643     3579999999988765322        23    4568899999999999999


Q ss_pred             ecC
Q 027255           63 MLA   65 (226)
Q Consensus        63 ~~p   65 (226)
                      ..-
T Consensus        81 ~ir   83 (425)
T cd05197          81 QFR   83 (425)
T ss_pred             eee
Confidence            874

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.43  E-value=0.013  Score=55.29  Aligned_cols=66  Identities=24%  Similarity=0.315  Sum_probs=48.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh---------------------HHHHHHCCCccc--------CCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATVG--------GSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~---------------------~~~l~~~g~~~~--------~s~~   51 (226)
                      ++|.|||.|..|...|..|.+.||+|+++++++..                     .+.+...|+.+.        -+.+
T Consensus       194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~  273 (652)
T PRK12814        194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLE  273 (652)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHH
Confidence            47999999999999999999999999999986532                     334455565432        1234


Q ss_pred             HHhhhCCeEEEecCC
Q 027255           52 EVIKKCTITIGMLAD   66 (226)
Q Consensus        52 ~~~~~advvi~~~p~   66 (226)
                      +.....|.||+++-.
T Consensus       274 ~~~~~~DaVilAtGa  288 (652)
T PRK12814        274 ELQKEFDAVLLAVGA  288 (652)
T ss_pred             HHHhhcCEEEEEcCC
Confidence            444568999998744

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.43  E-value=0.0093  Score=49.16  Aligned_cols=64  Identities=23%  Similarity=0.238  Sum_probs=54.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|+|. |..|+.+++.|.+.||+|.+..|++++...+. .++.+       ..++..++++.|.++++.+
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~   72 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG   72 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence            78999975 99999999999999999999999999998887 54433       3456677788999888887

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.42  E-value=0.013  Score=49.80  Aligned_cols=65  Identities=22%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHH---HHHC-----CC-------cccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDE---LVAH-----GA-------TVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~---l~~~-----g~-------~~~~s~~~~~~~advvi~~~   64 (226)
                      ++|.|.| .|.+|+.+++.|+++||+|++.+|+++....   +...     .+       .-..+..++++++|+||-+.
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   84 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTA   84 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeC
Confidence            5788998 5999999999999999999998887654322   2111     11       11234556778899988876


Q ss_pred             C
Q 027255           65 A   65 (226)
Q Consensus        65 p   65 (226)
                      .
T Consensus        85 ~   85 (322)
T PLN02662         85 S   85 (322)
T ss_pred             C
Confidence            3

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.42  E-value=0.031  Score=48.23  Aligned_cols=43  Identities=21%  Similarity=0.176  Sum_probs=37.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|.|.+|..+++.+...|.+|++.++++++.+.+.+.|+
T Consensus       169 ~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga  211 (349)
T TIGR03201       169 LVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA  211 (349)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence            5889999999999998888899999999999999887766665

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.41  E-value=0.026  Score=46.31  Aligned_cols=116  Identities=13%  Similarity=0.080  Sum_probs=68.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      ||.+||+|..|..++++|+..|+ +++++|.+.=....+.++        |...+....+.++  ..++-+......-.-
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            68999999999999999999997 588888765444444332        2111111222222  234333333221000


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      .+.. .    ...++.-.+||++.. ....-..+.+.+.+.++.++++.+.|-
T Consensus        81 ~~~~-~----~~f~~~~DvVi~a~D-n~~aR~~ln~~c~~~~iplI~~g~~G~  127 (234)
T cd01484          81 EQDF-N----DTFFEQFHIIVNALD-NIIARRYVNGMLIFLIVPLIESGTEGF  127 (234)
T ss_pred             hhhc-h----HHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEcccCC
Confidence            0000 0    012333467777655 455667788888888999999887664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.40  E-value=0.0095  Score=50.47  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=28.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL   33 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   33 (226)
                      ||.|||+|..|..+|++|+..|. +++++|.+.
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~   33 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK   33 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            68999999999999999999996 588887543

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=96.38  E-value=0.0022  Score=48.82  Aligned_cols=105  Identities=15%  Similarity=0.197  Sum_probs=62.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|++||.  + .++++.|.+.+++++++|++++...+-  .+........+++.+||+|++.-.  ..+...+   +.+
T Consensus        12 ~~V~~VG~--f-~P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti---~~i   81 (147)
T PF04016_consen   12 DKVGMVGY--F-QPLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGS--TLVNGTI---DDI   81 (147)
T ss_dssp             SEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH---HHH
T ss_pred             CEEEEEcC--c-HHHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEee--eeecCCH---HHH
Confidence            47999985  1 237888888899999999999764321  122245567788999999998742  2333333   445


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      ++..+++..++-...+.|-.    .+.+.+.|+.++.+-
T Consensus        82 L~~~~~~~~vil~GpS~~~~----P~~l~~~Gv~~v~g~  116 (147)
T PF04016_consen   82 LELARNAREVILYGPSAPLH----PEALFDYGVTYVGGS  116 (147)
T ss_dssp             HHHTTTSSEEEEESCCGGS-----GGGGCCTT-SEEEEE
T ss_pred             HHhCccCCeEEEEecCchhh----HHHHHhCCCCEEEEE
Confidence            56666566666655544421    223445677666553

; PDB: 3L5O_B 3NPG_A.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.35  E-value=0.0084  Score=40.35  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC   36 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~   36 (226)
                      ||.|||.|..|.-+|..|.+.|.+|+++.+++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999877643

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.35  E-value=0.031  Score=47.78  Aligned_cols=126  Identities=15%  Similarity=0.196  Sum_probs=74.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      ||.|||+|..|..++++|+..|. +++++|.+.=....+.++        |-..+....+.++  +.++-+.+...  .+
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~--~i   78 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA--NI   78 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec--cC
Confidence            68999999999999999999996 688998776554444433        2111222222222  23444443322  11


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~  139 (226)
                      .+..+    ..+.+..-.+||++.. .+..-..+.+.+...++.++++.+.|.     .|...+..++.
T Consensus        79 ~~~~~----~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~~ip~I~~gt~G~-----~G~v~vi~p~~  137 (312)
T cd01489          79 KDPDF----NVEFFKQFDLVFNALD-NLAARRHVNKMCLAADVPLIESGTTGF-----LGQVQVIKKGK  137 (312)
T ss_pred             CCccc----hHHHHhcCCEEEECCC-CHHHHHHHHHHHHHCCCCEEEEecCcc-----eeEEEEEcCCC
Confidence            11000    0122333456776654 456677788888999999999877663     34555555443

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=96.34  E-value=0.036  Score=46.12  Aligned_cols=96  Identities=15%  Similarity=0.087  Sum_probs=60.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+|-|+|. |. |+.++..|.+.||+|++.-+++...+.+...|             ..-|..-..+...+.+.+     
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g-------------~~~v~~g~l~~~~l~~~l-----   61 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ-------------ALTVHTGALDPQELREFL-----   61 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccC-------------CceEEECCCCHHHHHHHH-----
Confidence            89999988 76 99999999999999999998876554443322             112333333444444444     


Q ss_pred             cccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCcEEec
Q 027255           80 VLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~~ld~  118 (226)
                        ... .-.+|||.+.-. -..++...+.+.+.|+.|+.-
T Consensus        62 --~~~-~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~   98 (256)
T TIGR00715        62 --KRH-SIDILVDATHPFAAQITTNATAVCKELGIPYVRF   98 (256)
T ss_pred             --Hhc-CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence              111 234677877643 344555556666667766543

This enzyme was found to be a monomer by gel filtration.

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=96.31  E-value=0.017  Score=48.31  Aligned_cols=74  Identities=23%  Similarity=0.294  Sum_probs=58.4

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      +++.|||-++ +|++|+..|...++.|++++...              .++.+..+++|+|++++-.+..+.        
T Consensus       157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~--------  214 (283)
T COG0190         157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHFIK--------  214 (283)
T ss_pred             CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccccc--------
Confidence            3688999865 79999999999999999998643              356677889999999997654333        


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                       .+.+++|.++||.....
T Consensus       215 -~d~vk~gavVIDVGinr  231 (283)
T COG0190         215 -ADMVKPGAVVIDVGINR  231 (283)
T ss_pred             -cccccCCCEEEecCCcc
Confidence             24567999999987653

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.29  E-value=0.036  Score=45.18  Aligned_cols=87  Identities=20%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHH-----hhhCCeEEEecCCHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEV-----IKKCTITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-----~s~~~~-----~~~advvi~~~p~~~~~~   71 (226)
                      +|.|.|.|.+|..+++.+...|.+|++.++++++.+.+...|....     .+..+.     -...|+++.+++......
T Consensus       137 ~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~  216 (271)
T cd05188         137 TVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLA  216 (271)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHH
Confidence            6889999999999999888899999999999888877766654221     111111     134788888876533343


Q ss_pred             HHhhcccccccccCCCcEEEecCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      ..+       ..++++..+++.+.
T Consensus       217 ~~~-------~~l~~~G~~v~~~~  233 (271)
T cd05188         217 QAL-------RLLRPGGRIVVVGG  233 (271)
T ss_pred             HHH-------HhcccCCEEEEEcc
Confidence            333       44455556666554

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=96.29  E-value=0.031  Score=47.50  Aligned_cols=86  Identities=19%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-CC----H-HHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GS----P-AEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s----~-~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      +|.|+|.|.+|..+++.+...|++|++.++++++.+.+.+.|.... ..    . ....+..|+++.++.........+ 
T Consensus       165 ~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~-  243 (330)
T cd08245         165 RVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEAAL-  243 (330)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHHHH-
Confidence            5888999999998888888889999999999998888766664221 10    0 001124677776655444444443 


Q ss_pred             cccccccccCCCcEEEecC
Q 027255           76 DKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~s   94 (226)
                            ..++++..+++++
T Consensus       244 ------~~l~~~G~~i~~~  256 (330)
T cd08245         244 ------GGLRRGGRIVLVG  256 (330)
T ss_pred             ------HhcccCCEEEEEC
Confidence                  3444555555554

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=96.28  E-value=0.0066  Score=50.60  Aligned_cols=63  Identities=19%  Similarity=0.323  Sum_probs=45.0

Q ss_pred             EEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc--cCCHHHHhhhCCeEEEecC
Q 027255            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         3 IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~--~~s~~~~~~~advvi~~~p   65 (226)
                      |-|.| .|.+|+.+++.|.+.|++|++.+|++.....+...+...  .....+.+.++|+||-|..
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG   66 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence            34666 599999999999999999999999887654332221111  1334556678999998874

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.029  Score=46.77  Aligned_cols=40  Identities=20%  Similarity=0.211  Sum_probs=34.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      +|.|.|. |.+|..+++.|+++|++|++.+|++++.+.+.+
T Consensus         6 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~   46 (277)
T PRK06180          6 TWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA   46 (277)
T ss_pred             EEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence            5778876 999999999999999999999999988766654

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=96.27  E-value=0.027  Score=48.32  Aligned_cols=67  Identities=19%  Similarity=0.200  Sum_probs=47.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHH-HhhhCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAE-VIKKCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~-~~~~advvi~~~p~~~   68 (226)
                      +|.|.|.|.+|...++.+...|.+|++.++++++.+.+.+.|+...-+..+ ..+..|+++.+...+.
T Consensus       168 ~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~  235 (329)
T TIGR02822       168 RLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGG  235 (329)
T ss_pred             EEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHH
Confidence            588999999999877777778988999999999988888888754322111 1123466665554443

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.26  E-value=0.035  Score=45.86  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=68.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHC----CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH----GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~----g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      +|.-||+|. |. ++..+.+.|.. |+.+|.++..++...+.    ++...-...+.-...|+|+..... .....++  
T Consensus       122 ~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~-~~~~~l~--  196 (250)
T PRK00517        122 TVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILA-NPLLELA--  196 (250)
T ss_pred             EEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcH-HHHHHHH--
Confidence            678899998 64 55566777765 99999999887655432    331000000000047888866533 4455555  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                       ..+...+++|..++-. .........+.+.+.+.|...+..
T Consensus       197 -~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~~  236 (250)
T PRK00517        197 -PDLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDEV  236 (250)
T ss_pred             -HHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEEE
Confidence             5667788888776643 334455667778888888876653

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.26  E-value=0.035  Score=47.53  Aligned_cols=43  Identities=23%  Similarity=0.149  Sum_probs=37.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.|+
T Consensus       166 ~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga  209 (339)
T cd08239         166 TVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA  209 (339)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence            688999999999998888888988 9999999998887776665

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=96.25  E-value=0.012  Score=49.80  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=29.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~   35 (226)
                      ||.|||+|..|..++++|+..|+ +++++|.+.=.
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve   35 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTID   35 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence            68999999999999999999997 58888865433

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK06153 hypothetical protein; Provisional

Probab=96.25  E-value=0.03  Score=49.09  Aligned_cols=111  Identities=9%  Similarity=-0.013  Sum_probs=63.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC---------CC--cccCCHHHHhhhCCeEEEecCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH---------GA--TVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~---------g~--~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      +|+|||+|..|+.++..|++.|. +++++|.+.=....+.++         |.  ..+...++.+.....=+.+.+.. .
T Consensus       178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~~~-I  256 (393)
T PRK06153        178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHPEY-I  256 (393)
T ss_pred             cEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEeec-C
Confidence            79999999999999999999996 688888653222222211         11  11222223233222112222221 1


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                      -++.+       ..+..-.+|++|.-. ...-..+.+.+.+.++.|+|+.+.
T Consensus       257 ~~~n~-------~~L~~~DiV~dcvDn-~~aR~~ln~~a~~~gIP~Id~G~~  300 (393)
T PRK06153        257 DEDNV-------DELDGFTFVFVCVDK-GSSRKLIVDYLEALGIPFIDVGMG  300 (393)
T ss_pred             CHHHH-------HHhcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEeeec
Confidence            11111       123334577777664 344566778888889999998653

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.25  E-value=0.0081  Score=50.55  Aligned_cols=64  Identities=23%  Similarity=0.262  Sum_probs=45.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH------HCCCcccCCHHHHhhhC-CeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV------AHGATVGGSPAEVIKKC-TITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~------~~g~~~~~s~~~~~~~a-dvvi~~~   64 (226)
                      |+|.|.| .|.+|+.+++.|.++||+|++.+|.+.......      .....-.....++.+.. |+||-+.
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a   72 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLA   72 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence            6789999 599999999999999999999999877654432      11111112333445555 8887765

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=96.25  E-value=0.023  Score=46.92  Aligned_cols=40  Identities=23%  Similarity=0.285  Sum_probs=30.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-----------CeEEEEcCCchhHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-----------FKVTVWNRTLSKCDELV   40 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-----------~~V~~~dr~~~~~~~l~   40 (226)
                      .+|.|||+|..|..++++|++.|           .+++++|.+.=....+.
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLn   62 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVG   62 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhh
Confidence            37999999999999999999864           28899987644333333

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK08017 oxidoreductase; Provisional

Probab=96.25  E-value=0.012  Score=48.17  Aligned_cols=43  Identities=21%  Similarity=0.286  Sum_probs=37.5

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|.|. |.+|..+++.|+++|++|++.+|++++.+.+.+.++
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~   47 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGF   47 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCC
Confidence            6889998 999999999999999999999999988777655443

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=96.24  E-value=0.023  Score=50.66  Aligned_cols=125  Identities=17%  Similarity=0.207  Sum_probs=76.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC------eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF------KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~------~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p   65 (226)
                      ||.|||+|..|..++++|+..|.      +++++|.+.=....+.++        |...+....+.+.  +.++-+....
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            68999999999999999999998      799998765443334332        2222222233332  3555555543


Q ss_pred             CH--HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEec
Q 027255           66 DP--AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA  137 (226)
Q Consensus        66 ~~--~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~g  137 (226)
                      ..  +....++ . .   ..+..-.+||++.- .+..-..+.+.+...++.++++.+.|.     .|...+++-
T Consensus        81 ~~v~~~~~~~~-~-~---~f~~~~DvVi~alD-n~~aR~~vn~~C~~~~iPli~~gt~G~-----~G~v~v~iP  143 (435)
T cd01490          81 NRVGPETEHIF-N-D---EFWEKLDGVANALD-NVDARMYVDRRCVYYRKPLLESGTLGT-----KGNTQVVIP  143 (435)
T ss_pred             cccChhhhhhh-h-H---HHhcCCCEEEECCC-CHHHHHHHHHHHHHhCCCEEEEecccc-----eeEEEEEeC
Confidence            21  1122222 1 1   12223456776654 456667888899999999999988876     345555553

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.23  E-value=0.027  Score=46.34  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=35.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      |+|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   41 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL   41 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            78889986 88999999999999999999999987765543

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=96.23  E-value=0.071  Score=39.71  Aligned_cols=102  Identities=19%  Similarity=0.210  Sum_probs=74.3

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      ++|+++|+    ..-+...++.|.++||+|+=.|+...- +++  .|-.+..|+.+.-+.-|+|-+.-+. +++.+++  
T Consensus        17 K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~-~ei--LG~k~y~sL~dIpe~IDiVdvFR~~-e~~~~i~--   90 (140)
T COG1832          17 KTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAG-EEI--LGEKVYPSLADIPEPIDIVDVFRRS-EAAPEVA--   90 (140)
T ss_pred             ceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccch-HHh--cCchhhhcHHhCCCCCcEEEEecCh-hhhHHHH--
Confidence            46899998    457888999999999999988875432 222  4778889999999999999999976 6777776  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                       ++.++. ....++...+..+.+    ..+.+++.|..
T Consensus        91 -~eal~~-~~kv~W~QlGi~n~e----a~~~~~~aG~~  122 (140)
T COG1832          91 -REALEK-GAKVVWLQLGIRNEE----AAEKARDAGLD  122 (140)
T ss_pred             -HHHHhh-CCCeEEEecCcCCHH----HHHHHHHhCcH
Confidence             444442 266677777777665    33444555653

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.22  E-value=0.0068  Score=53.54  Aligned_cols=32  Identities=31%  Similarity=0.655  Sum_probs=30.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      +|.|||.|.+|...|..|++.|++|+++++.+
T Consensus         3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            79999999999999999999999999999875

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.041  Score=45.68  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=33.4

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+..
T Consensus         3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   43 (274)
T PRK05693          3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA   43 (274)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4556665 899999999999999999999999887766544

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.21  E-value=0.007  Score=53.44  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=32.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |+|.|||.|.+|...|..|++.|++|.++++...
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            8999999999999999999999999999999754

>PRK06753 hypothetical protein; Provisional

Probab=96.21  E-value=0.0068  Score=52.70  Aligned_cols=34  Identities=29%  Similarity=0.514  Sum_probs=32.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |+|.|||.|..|...|..|.++|++|+++++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            7999999999999999999999999999998875

>PRK10537 voltage-gated potassium channel; Provisional

Probab=96.20  E-value=0.085  Score=46.65  Aligned_cols=106  Identities=14%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc---cCCHHHH-----hhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV---GGSPAEV-----IKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~---~~s~~~~-----~~~advvi~~~p~~~~~~~v   73 (226)
                      .|-|+|.|.+|+.+++.|.+.|+++.+.+.+.  .+.....+...   -.+-.+.     +++|+.|++++++++....+
T Consensus       242 HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i  319 (393)
T PRK10537        242 HFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV  319 (393)
T ss_pred             eEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence            37799999999999999999999999888652  33433344322   1122233     34789999998886654444


Q ss_pred             hhcccccccccCCC-cEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           74 VFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        74 ~~~~~~l~~~l~~g-~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      ..   .. ..+.|+ ++++-..+  ++    -.+.+++.|...+=.|
T Consensus       320 vL---~a-r~l~p~~kIIa~v~~--~~----~~~~L~~~GaD~VIsp  356 (393)
T PRK10537        320 VL---AA-KEMSSDVKTVAAVND--SK----NLEKIKRVHPDMIFSP  356 (393)
T ss_pred             HH---HH-HHhCCCCcEEEEECC--HH----HHHHHHhcCCCEEECH
Confidence            41   12 233343 45544432  32    2445566787765444

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.033  Score=46.38  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=36.3

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g   43 (226)
                      +|.|.|. |.+|..+|+.|++.|++|++.+|++++.+.+...+
T Consensus         6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~   48 (277)
T PRK05993          6 SILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEG   48 (277)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
Confidence            4778887 99999999999999999999999998887776543

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=96.18  E-value=0.038  Score=47.63  Aligned_cols=62  Identities=16%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             eEEEEecChhHHHHHHHHHh-C-CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--hCCeEEEecC
Q 027255            2 EVGFLGLGIMGKAISMNLLR-N-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~-~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p   65 (226)
                      +|.|+|+|.+|...++.+.+ . +.+|++.++++++.+.+.+.+...  ...+..+  ..|+||-++.
T Consensus       166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G  231 (341)
T cd08237         166 VIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVG  231 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCC
Confidence            58899999999987777765 3 467999999998887765544321  1112212  2566666664

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.17  E-value=0.053  Score=47.25  Aligned_cols=43  Identities=23%  Similarity=0.260  Sum_probs=36.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+
T Consensus       194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga  237 (371)
T cd08281         194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA  237 (371)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence            58899999999988888878898 59999999999887776665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.16  E-value=0.03  Score=47.55  Aligned_cols=38  Identities=18%  Similarity=0.276  Sum_probs=30.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDEL   39 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l   39 (226)
                      ++.|+|+|.+|...++.+...|.+ |.++++++++.+..
T Consensus       147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a  185 (308)
T TIGR01202       147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA  185 (308)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence            588999999999888777778876 66778887776544

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=96.16  E-value=0.048  Score=45.14  Aligned_cols=125  Identities=18%  Similarity=0.210  Sum_probs=78.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.+||+|..|++.+.+|+.+|. +++++|.+.-....++.+        |-..+.+..+.+.  +.++.+......-..
T Consensus        32 ~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~  111 (254)
T COG0476          32 RVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDE  111 (254)
T ss_pred             CEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCCCeEEEeecccCh
Confidence            68999999999999999999996 588888876655555543        2211222222222  345555554332111


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~  139 (226)
                      .       ..........+++|++-. ..+-..+.+.....+..++++.+.+-     .|...++..++
T Consensus       112 ~-------~~~~~~~~~d~v~d~~dn-~~~r~~iN~~~~~~~~pli~~~~~~~-----~g~~~~~~~~~  167 (254)
T COG0476         112 E-------NAEELIAQFDVVLDCTDN-FETRYLINDACVKLGIPLVHGGAIGF-----EGQVTVIIPGD  167 (254)
T ss_pred             h-------hHHHHhccCCEEEECCCC-HHHHHHHHHHHHHhCCCeEeeeeccc-----eEEEEEEecCC
Confidence            1       112334567788888765 55555666666777888888877764     45566666554

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.15  E-value=0.0064  Score=53.18  Aligned_cols=64  Identities=13%  Similarity=0.097  Sum_probs=43.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC-------CcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-------ATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~advvi~~~   64 (226)
                      |+|.|.|. |.+|+.+++.|.++||+|++.+|.......-...+       +.-..+...+++++|+||-+.
T Consensus        22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            78999987 99999999999999999999998643211000001       111112334456789988776

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.13  E-value=0.022  Score=49.01  Aligned_cols=40  Identities=28%  Similarity=0.522  Sum_probs=32.7

Q ss_pred             eEEEEecChhHHHHHHHHHh-CCCeEE-EEcCCchhHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~-~G~~V~-~~dr~~~~~~~l~~   41 (226)
                      |||+||.|.||+.|.....+ .|.+|. +-||+.+.+.+...
T Consensus        19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~   60 (438)
T COG4091          19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYD   60 (438)
T ss_pred             EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHH
Confidence            79999999999999999886 588866 45899887766544

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=96.11  E-value=0.05  Score=48.58  Aligned_cols=117  Identities=14%  Similarity=0.141  Sum_probs=70.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.+||+|..|..++++|+..|. .++++|.+.-....+...        |-..+....+.+.  +.|+-+.....  ..
T Consensus        22 ~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e--~~   99 (425)
T cd01493          22 HVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEE--SP   99 (425)
T ss_pred             eEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec--cc
Confidence            69999999999999999999997 699998664333233211        2111111122222  45665555533  12


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      .+++.   .....+..-.+||. +.........+.+.+.+.++.++.+-..|.-
T Consensus       100 ~~ll~---~~~~f~~~fdiVI~-t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~  149 (425)
T cd01493         100 EALLD---NDPSFFSQFTVVIA-TNLPESTLLRLADVLWSANIPLLYVRSYGLY  149 (425)
T ss_pred             chhhh---hHHHHhcCCCEEEE-CCCCHHHHHHHHHHHHHcCCCEEEEecccCE
Confidence            22221   01122334456665 4556677788999999999999888776643

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.026  Score=53.31  Aligned_cols=108  Identities=19%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCc-ccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GAT-VGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~-~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      +|-|.|+|..|..||+|+.-+|. .|+++|..+-....|..+        |.. ...+...+++=-+.|-+.+-+....+
T Consensus        39 ~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~yV~V~v~t~~~~~  118 (1013)
T KOG2012|consen   39 NVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNNYVPVVVLTGPLTE  118 (1013)
T ss_pred             cEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhcceeeEEecCcccH
Confidence            58899999999999999999996 599999988887777553        222 12222333322233333332323333


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      +.+          ..=++|| .+..+.+...++.+.++++|+.|+.+-+
T Consensus       119 e~L----------~~FqvVV-lt~~~le~q~~i~~fch~~~i~fi~ad~  156 (1013)
T KOG2012|consen  119 EFL----------SDFQVVV-LTDASLEEQLKINDFCHSHGIAFIAADT  156 (1013)
T ss_pred             HHH----------hCCcEEE-EecCchHHHHHHHHHHHhcCeEEEEecc
Confidence            333          1223444 4445577888999999999998888753

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.09  E-value=0.019  Score=49.61  Aligned_cols=64  Identities=23%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcc-------cCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATV-------GGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~-------~~s~~~~~~~advvi~~~   64 (226)
                      |+|.|.| .|.+|+.+++.|+++|++|++.+|++++.+.+...     ++..       .....+++++.|+||-+.
T Consensus        11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896         11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            6899998 59999999999999999999998887765544321     1111       112345566788877765

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.08  E-value=0.057  Score=45.22  Aligned_cols=107  Identities=14%  Similarity=0.111  Sum_probs=62.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCC---H
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLAD---P   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~---~   67 (226)
                      +|.|||+|.+|+.+|.+|++.| .+++++|.+.-....+..+        |-..+.-..+-+.  +.++-+...+.   +
T Consensus        32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~  111 (268)
T PRK15116         32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITP  111 (268)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccCh
Confidence            6999999999999999999999 5799998765443333321        1111111122221  23444444432   1


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +...+.+       .  ..-.+|||+.- .+.....+.+.+.++++.++.+
T Consensus       112 e~~~~ll-------~--~~~D~VIdaiD-~~~~k~~L~~~c~~~~ip~I~~  152 (268)
T PRK15116        112 DNVAEYM-------S--AGFSYVIDAID-SVRPKAALIAYCRRNKIPLVTT  152 (268)
T ss_pred             hhHHHHh-------c--CCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence            1122221       1  12357777755 3445667888888889888766

>PLN00016 RNA-binding protein; Provisional

Probab=96.08  E-value=0.075  Score=46.52  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=31.9

Q ss_pred             CeEEEE----e-cChhHHHHHHHHHhCCCeEEEEcCCchhH
Q 027255            1 MEVGFL----G-LGIMGKAISMNLLRNGFKVTVWNRTLSKC   36 (226)
Q Consensus         1 m~IgvI----G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~   36 (226)
                      |+|.|+    | .|.+|+.+++.|+++||+|++.+|++...
T Consensus        53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~   93 (378)
T PLN00016         53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPS   93 (378)
T ss_pred             ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcch
Confidence            479999    6 59999999999999999999999987653

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.06  E-value=0.025  Score=49.71  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=64.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch------------------hHHHHHHC-CCcccCCHHHHhhhCCeEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS------------------KCDELVAH-GATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~------------------~~~~l~~~-g~~~~~s~~~~~~~advvi   61 (226)
                      ++|+|-|.|+.|...|+.|...|.+|++++-+..                  +..++... |++..+..+-+.-+||+.+
T Consensus       208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~  287 (411)
T COG0334         208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI  287 (411)
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence            4799999999999999999999999988865555                  33333332 4555555333445799887


Q ss_pred             EecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        62 ~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      -|--......+..       +.++. ++|+...+. |.+. +..+.+.++|+.|+
T Consensus       288 PcA~~n~I~~~na-------~~l~a-k~V~EgAN~-P~t~-eA~~i~~erGIl~~  332 (411)
T COG0334         288 PCALENVITEDNA-------DQLKA-KIVVEGANG-PTTP-EADEILLERGILVV  332 (411)
T ss_pred             ccccccccchhhH-------HHhhh-cEEEeccCC-CCCH-HHHHHHHHCCCEEc
Confidence            7654322222222       23322 266665543 3222 23344457888764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.06  E-value=0.033  Score=49.49  Aligned_cols=85  Identities=18%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             eEEEEec----------ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            2 EVGFLGL----------GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~----------G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      +|+|+|+          -+-...+++.|.+.|.+|.+||+.-.... ..  ....+.++.++++++|+|++++..++ .+
T Consensus       315 ~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~--~~~~~~~~~~~~~~ad~~v~~t~~~~-~~  390 (411)
T TIGR03026       315 TVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VK--GLPLIDDLEEALKGADALVILTDHDE-FK  390 (411)
T ss_pred             EEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hh--hcccCCCHHHHHhCCCEEEEecCCHH-Hh
Confidence            6888888          34677899999999999999998643322 11  12235788899999999999998854 33


Q ss_pred             HHhhcccccccccCCCcEEEec
Q 027255           72 SVVFDKGGVLEQICPGKGYIDM   93 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~   93 (226)
                      +.-+  +.+.+.+ ...+|+|+
T Consensus       391 ~~~~--~~~~~~~-~~~~v~D~  409 (411)
T TIGR03026       391 DLDL--EKIKDLM-KGKVVVDT  409 (411)
T ss_pred             ccCH--HHHHHhc-CCCEEEeC
Confidence            3210  2333333 35578885

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=96.06  E-value=0.037  Score=46.78  Aligned_cols=87  Identities=18%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             EEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccc
Q 027255            4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQ   83 (226)
Q Consensus         4 gvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~   83 (226)
                      .|-|.|..|..-|+.|...|..|++...+|=.+-...=.|.++ .+.+|++...|++++++-.-    +++.  ..-+..
T Consensus       218 Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTGc~----dii~--~~H~~~  290 (434)
T KOG1370|consen  218 VVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTGCK----DIIT--GEHFDQ  290 (434)
T ss_pred             EEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccCCc----chhh--HHHHHh
Confidence            3559999999999999999999999998876543333347665 46999999999999887542    2332  223466


Q ss_pred             cCCCcEEEecCCCC
Q 027255           84 ICPGKGYIDMSTVD   97 (226)
Q Consensus        84 l~~g~ivvd~st~~   97 (226)
                      ++.+.|+.++.-..
T Consensus       291 mk~d~IvCN~Ghfd  304 (434)
T KOG1370|consen  291 MKNDAIVCNIGHFD  304 (434)
T ss_pred             CcCCcEEecccccc
Confidence            78889998887543

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.05  E-value=0.036  Score=49.58  Aligned_cols=110  Identities=17%  Similarity=0.087  Sum_probs=64.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCC----------chhHHHHHH---C-------------CCcccCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRT----------LSKCDELVA---H-------------GATVGGSPAEV   53 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~----------~~~~~~l~~---~-------------g~~~~~s~~~~   53 (226)
                      ++|.|-|.|++|...|+.|.+.|.+|+ +.|.+          .+++..+.+   .             +++..+ .++.
T Consensus       238 k~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~-~~~~  316 (454)
T PTZ00079        238 KTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVP-GKKP  316 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeC-CcCc
Confidence            478999999999999999999999987 77776          555533221   1             222222 2222


Q ss_pred             h-hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           54 I-KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        54 ~-~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      + -.||+.+-|-.......+..   ..+   .+.+..+|--....|.+. +-.+.+.++|+.|+..
T Consensus       317 ~~~~cDI~iPcA~~n~I~~~~a---~~l---~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~PD  375 (454)
T PTZ00079        317 WEVPCDIAFPCATQNEINLEDA---KLL---IKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCPG  375 (454)
T ss_pred             ccCCccEEEeccccccCCHHHH---HHH---HHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEECh
Confidence            2 36898887764322111111   111   123444444444444444 4556778889888644

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.05  E-value=0.02  Score=53.00  Aligned_cols=66  Identities=17%  Similarity=0.235  Sum_probs=48.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc---------------------hhHHHHHHCCCcccC--------CHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL---------------------SKCDELVAHGATVGG--------SPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~---------------------~~~~~l~~~g~~~~~--------s~~   51 (226)
                      .+|.|||.|..|...|..|.+.|++|+++++.+                     .+.+.+.+.|+....        +..
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~  217 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLE  217 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHH
Confidence            379999999999999999999999999998642                     234455666754311        233


Q ss_pred             HHhhhCCeEEEecCC
Q 027255           52 EVIKKCTITIGMLAD   66 (226)
Q Consensus        52 ~~~~~advvi~~~p~   66 (226)
                      +.-...|+||+++-.
T Consensus       218 ~~~~~~D~Vi~AtG~  232 (564)
T PRK12771        218 QLEGEFDAVFVAIGA  232 (564)
T ss_pred             HHHhhCCEEEEeeCC
Confidence            344568999999854

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.05  E-value=0.032  Score=44.97  Aligned_cols=38  Identities=24%  Similarity=0.404  Sum_probs=33.3

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l   39 (226)
                      +|.|.|. |.+|..+++.|+++|++|++++|++++.+.+
T Consensus         7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~   45 (246)
T PRK05653          7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL   45 (246)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence            6888885 9999999999999999999999998775543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.05  E-value=0.032  Score=45.51  Aligned_cols=39  Identities=18%  Similarity=0.179  Sum_probs=34.0

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      +|.|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus         6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   45 (258)
T PRK12429          6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA   45 (258)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            577887 599999999999999999999999988776543

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.05  E-value=0.0068  Score=53.49  Aligned_cols=65  Identities=28%  Similarity=0.397  Sum_probs=45.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHH------HHHH--CCCcc-------cCCHHHHhh----hCCeE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD------ELVA--HGATV-------GGSPAEVIK----KCTIT   60 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~------~l~~--~g~~~-------~~s~~~~~~----~advv   60 (226)
                      |+|.|+|. |.+|+.+++.|.++|++|++.+|++++.+      .+..  .++..       ..+..++++    .+|+|
T Consensus        61 ~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~V  140 (390)
T PLN02657         61 VTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVDVV  140 (390)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCcEE
Confidence            57889986 99999999999999999999999876432      1111  12221       123445555    48999


Q ss_pred             EEecC
Q 027255           61 IGMLA   65 (226)
Q Consensus        61 i~~~p   65 (226)
                      |.|+.
T Consensus       141 i~~aa  145 (390)
T PLN02657        141 VSCLA  145 (390)
T ss_pred             EECCc
Confidence            98763

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.036  Score=44.97  Aligned_cols=40  Identities=20%  Similarity=0.180  Sum_probs=33.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      ++|.|+|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus         8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~   48 (250)
T PRK12939          8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA   48 (250)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            35778885 99999999999999999999999988766543

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.058  Score=43.30  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDE   38 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~   38 (226)
                      +|.|+|. |.+|..+++.|+++|++|++.+|++++..+
T Consensus         9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~   46 (239)
T PRK12828          9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ   46 (239)
T ss_pred             EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence            5778875 999999999999999999999998876544

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.03  E-value=0.012  Score=38.59  Aligned_cols=31  Identities=32%  Similarity=0.584  Sum_probs=27.8

Q ss_pred             EEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         5 vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      |||.|.-|...|..|.+.|++|+++++++..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence            7999999999999999999999999988653

...

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.03  E-value=0.02  Score=56.17  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=49.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~--------~s~~   51 (226)
                      +||+|||.|.-|...|..|++.||+|++|++.+.                     .++.+...|+++.        -+.+
T Consensus       307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~  386 (944)
T PRK12779        307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE  386 (944)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence            4799999999999999999999999999987642                     1233455565531        2456


Q ss_pred             HHhh-hCCeEEEecC
Q 027255           52 EVIK-KCTITIGMLA   65 (226)
Q Consensus        52 ~~~~-~advvi~~~p   65 (226)
                      ++.+ +.|.||+++-
T Consensus       387 ~l~~~~yDAV~LAtG  401 (944)
T PRK12779        387 DLKAAGFWKIFVGTG  401 (944)
T ss_pred             HhccccCCEEEEeCC
Confidence            6654 5899999874

>PRK07877 hypothetical protein; Provisional

Probab=96.03  E-value=0.047  Score=51.84  Aligned_cols=112  Identities=15%  Similarity=0.180  Sum_probs=65.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHC-------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH-------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|+|||+| .|+.+|..|++.|.  +++++|.+.=....++..       |...+...++-+.  +.++-|.+.+..- .
T Consensus       109 ~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i-~  186 (722)
T PRK07877        109 RIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL-T  186 (722)
T ss_pred             CEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC-C
Confidence            79999999 89999999999994  788888654333233322       2222222222222  2455555554311 1


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      .+.+   +.+   +..-.+|||++-. ...-..+.+.+.++++.++.+...+
T Consensus       187 ~~n~---~~~---l~~~DlVvD~~D~-~~~R~~ln~~a~~~~iP~i~~~~~~  231 (722)
T PRK07877        187 EDNV---DAF---LDGLDVVVEECDS-LDVKVLLREAARARRIPVLMATSDR  231 (722)
T ss_pred             HHHH---HHH---hcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            1112   122   2234678888765 4555566777777888877766433

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.02  E-value=0.018  Score=50.47  Aligned_cols=62  Identities=16%  Similarity=0.292  Sum_probs=43.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhH-HHHHHCCCc-ccCC---HHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGAT-VGGS---PAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~-~~l~~~g~~-~~~s---~~~~~~~advvi~   62 (226)
                      ++|||||.|..|..|+....+.|++|+++|.++... ..+...-+. ...+   +.++++.+|+|..
T Consensus         3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            469999999999999999999999999999886542 222222111 1223   4456778887643

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.02  E-value=0.01  Score=49.49  Aligned_cols=58  Identities=22%  Similarity=0.398  Sum_probs=45.7

Q ss_pred             ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-hCCeEEEec
Q 027255            7 GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGML   64 (226)
Q Consensus         7 G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~advvi~~~   64 (226)
                      |.|.+|+++...|.+.||+|++..|++.+.+......+......++... .+|+||--.
T Consensus         6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLA   64 (297)
T COG1090           6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLA   64 (297)
T ss_pred             cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECC
Confidence            6799999999999999999999999999877655444444455566655 699888654

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.039  Score=46.55  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=33.9

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      +|-|.|. |.+|..+|+.|+++|++|++.+|++++.+.+.
T Consensus        42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~   81 (293)
T PRK05866         42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA   81 (293)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5777776 99999999999999999999999988776654

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.033  Score=44.94  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=33.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      +|.|+|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus         8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~   47 (237)
T PRK07326          8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA   47 (237)
T ss_pred             EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence            5778875 99999999999999999999999988766553

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.00  E-value=0.022  Score=51.04  Aligned_cols=65  Identities=11%  Similarity=0.162  Sum_probs=47.8

Q ss_pred             CeEEEEecChhHH-HHHHHHHhC-----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~~-----G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~~~~~~advvi~   62 (226)
                      |||+|||.|+.=+ .+...|...     +-+|.++|.++++.+....        .|    +..+++.++++++||.||+
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~   80 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA   80 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence            8999999998522 344445433     3579999999988765322        13    4568899999999999999


Q ss_pred             ecC
Q 027255           63 MLA   65 (226)
Q Consensus        63 ~~p   65 (226)
                      ..-
T Consensus        81 ~ir   83 (437)
T cd05298          81 QIR   83 (437)
T ss_pred             Eee
Confidence            874

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.017  Score=46.69  Aligned_cols=41  Identities=22%  Similarity=0.244  Sum_probs=36.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ||+.|.|. |.+|+.+++.|++.|++|++.+|++++.+.+.+
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~   42 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK   42 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            78889987 899999999999999999999999888766543

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=95.99  E-value=0.022  Score=55.04  Aligned_cols=119  Identities=14%  Similarity=0.158  Sum_probs=70.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-------CCeEEEE---cCCchhH-------HHHHHC---CCcc--cCCHHHHhh---
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-------GFKVTVW---NRTLSKC-------DELVAH---GATV--GGSPAEVIK---   55 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-------G~~V~~~---dr~~~~~-------~~l~~~---g~~~--~~s~~~~~~---   55 (226)
                      ++|+++|+|.+|+.+.+.|.++       |.++.+.   +++....       ..+...   ....  .....+.+.   
T Consensus       466 ~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (819)
T PRK09436        466 LDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVKEYH  545 (819)
T ss_pred             ccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHhhcC
Confidence            5799999999999999998653       4554432   4332211       111110   0000  111223333   


Q ss_pred             -hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCH----HHHHHHHHHHHhcCCcEE-ecCCCCChHh
Q 027255           56 -KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH----ETSIKISRAITSKGGHFL-EAPVSGSKQP  126 (226)
Q Consensus        56 -~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~----~~~~~l~~~~~~~g~~~l-d~pv~g~~~~  126 (226)
                       ..++|+-|+++.. ....+      ...+..|..||..+....    ....++.+..+++|+.|. ++.|.|+-|-
T Consensus       546 ~~~~vvvd~t~~~~-~~~~~------~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPi  615 (819)
T PRK09436        546 LLNPVIVDCTSSQA-VADQY------ADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPV  615 (819)
T ss_pred             CCCCEEEECCCChH-HHHHH------HHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccch
Confidence             2488999998744 33333      366778888888776422    366778888888888754 5667666543

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.037  Score=44.84  Aligned_cols=39  Identities=18%  Similarity=0.343  Sum_probs=33.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      ++.|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus         8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~   47 (241)
T PRK07454          8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA   47 (241)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4677775 99999999999999999999999987765543

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=95.98  E-value=0.021  Score=50.91  Aligned_cols=65  Identities=12%  Similarity=0.156  Sum_probs=47.4

Q ss_pred             CeEEEEecChhHH-HHHHHHHhC-----CCeEEEEcCC-chhHHHHH--------HCC----CcccCCHHHHhhhCCeEE
Q 027255            1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRT-LSKCDELV--------AHG----ATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~~-----G~~V~~~dr~-~~~~~~l~--------~~g----~~~~~s~~~~~~~advvi   61 (226)
                      |||.|||.|+.-+ .+.+.|+..     +-+|.++|++ +++.+...        +.|    +..+.+.+++++++|+||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi   80 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF   80 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence            8999999999744 344555542     3579999999 78765422        123    345789999999999999


Q ss_pred             EecC
Q 027255           62 GMLA   65 (226)
Q Consensus        62 ~~~p   65 (226)
                      ++.-
T Consensus        81 ~~~~   84 (419)
T cd05296          81 TQIR   84 (419)
T ss_pred             EEEe
Confidence            9863

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.048  Score=45.16  Aligned_cols=39  Identities=21%  Similarity=0.132  Sum_probs=34.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      +|.|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus         7 ~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~   46 (273)
T PRK07825          7 VVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA   46 (273)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5778876 99999999999999999999999998876654

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=95.96  E-value=0.029  Score=50.54  Aligned_cols=66  Identities=24%  Similarity=0.295  Sum_probs=51.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh---------------------HHHHHHCCCcc--------cCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATV--------GGSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~---------------------~~~l~~~g~~~--------~~s~~   51 (226)
                      ++|+|||.|.-|..-|..|+++||.|++|++.+.-                     ++.+.+.|+++        .-+.+
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~  203 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE  203 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence            47999999999999999999999999999876542                     23344445332        34788


Q ss_pred             HHhhhCCeEEEecCC
Q 027255           52 EVIKKCTITIGMLAD   66 (226)
Q Consensus        52 ~~~~~advvi~~~p~   66 (226)
                      ++.+..|.|++++..
T Consensus       204 ~L~~e~Dav~l~~G~  218 (457)
T COG0493         204 ELLKEYDAVFLATGA  218 (457)
T ss_pred             HHHHhhCEEEEeccc
Confidence            888888999999854

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.95  E-value=0.031  Score=48.08  Aligned_cols=28  Identities=25%  Similarity=0.507  Sum_probs=23.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCC----CeEEEE
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG----FKVTVW   29 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G----~~V~~~   29 (226)
                      ||||+|+|.+|+.+.+.|.+.+    ++|...
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI   32 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL   32 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            6999999999999999988753    676654

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.043  Score=44.97  Aligned_cols=41  Identities=22%  Similarity=0.233  Sum_probs=34.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++|.|+|. |.+|..+++.|+++|++|++.+|+++..+.+.+
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~   53 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA   53 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46788876 999999999999999999999999877665543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.92  E-value=0.033  Score=50.36  Aligned_cols=66  Identities=24%  Similarity=0.290  Sum_probs=48.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~--------~s~~   51 (226)
                      ++|.|||.|..|...|..|.+.|++|+++++.+.                     ..+.+.+.|+.+.        .+..
T Consensus       144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~  223 (471)
T PRK12810        144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAE  223 (471)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCHH
Confidence            4799999999999999999999999999987642                     1233455565431        1344


Q ss_pred             HHhhhCCeEEEecCC
Q 027255           52 EVIKKCTITIGMLAD   66 (226)
Q Consensus        52 ~~~~~advvi~~~p~   66 (226)
                      +.....|.||+++-.
T Consensus       224 ~~~~~~d~vvlAtGa  238 (471)
T PRK12810        224 ELLAEYDAVFLGTGA  238 (471)
T ss_pred             HHHhhCCEEEEecCC
Confidence            555678999998743

>PLN02214 cinnamoyl-CoA reductase

Probab=95.92  E-value=0.024  Score=48.93  Aligned_cols=65  Identities=20%  Similarity=0.139  Sum_probs=46.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHH-----HHHHC--CCc-------ccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD-----ELVAH--GAT-------VGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-----~l~~~--g~~-------~~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.|. |.+|+.+++.|+++||+|++..|+.+...     .+...  .+.       -..+..++++.+|+||-+..
T Consensus        11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~   90 (342)
T PLN02214         11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTAS   90 (342)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEecC
Confidence            46889987 99999999999999999999998766421     11111  111       12234566778999988763

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.065  Score=43.89  Aligned_cols=39  Identities=18%  Similarity=0.055  Sum_probs=34.0

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      +|-|+|. |.+|..+++.|+++|++|++.+|++.+.+.+.
T Consensus         9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~   48 (255)
T PRK06057          9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA   48 (255)
T ss_pred             EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            5788888 99999999999999999999999987765543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.90  E-value=0.045  Score=47.95  Aligned_cols=87  Identities=14%  Similarity=0.069  Sum_probs=59.6

Q ss_pred             eEEEEecC----------hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            2 EVGFLGLG----------IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~G----------~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      +|||.|+-          .-...++..|.+.|.+|.+||+....-......++..+.++.++++++|++++++.+ +.++
T Consensus       312 ~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew-~ef~  390 (414)
T COG1004         312 TIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW-DEFR  390 (414)
T ss_pred             EEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-HHHh
Confidence            56666663          235678899999999999999754332222212578899999999999999999966 4555


Q ss_pred             HHhhcccccccccCCCcEEEecC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      ++-+  +.+   +-++.+|+|.-
T Consensus       391 ~~d~--~~~---~m~~~~v~DgR  408 (414)
T COG1004         391 DLDF--EKL---LMKTPVVIDGR  408 (414)
T ss_pred             ccCh--hhh---hccCCEEEecc
Confidence            5431  112   33677777743

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.044  Score=44.60  Aligned_cols=39  Identities=23%  Similarity=0.252  Sum_probs=33.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l   39 (226)
                      ++|-|.|. |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~   46 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV   46 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            35778886 9999999999999999999999987765444

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.87  E-value=0.052  Score=46.16  Aligned_cols=51  Identities=25%  Similarity=0.315  Sum_probs=45.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAE   52 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~~   52 (226)
                      +++|+|+|.+|.+.+......|. +++..|.|+++-+..++.|++-+-++.+
T Consensus       195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d  246 (375)
T KOG0022|consen  195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD  246 (375)
T ss_pred             EEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh
Confidence            68999999999999999988885 6999999999999999999877666653

>PLN02650 dihydroflavonol-4-reductase

Probab=95.87  E-value=0.032  Score=48.19  Aligned_cols=64  Identities=27%  Similarity=0.396  Sum_probs=46.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----C-----------CcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G-----------ATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g-----------~~~~~s~~~~~~~advvi~~~   64 (226)
                      ++|.|.|. |.+|+.+++.|++.|++|++.+|+++..+.+...    +           +.-..+..++++++|+||-+.
T Consensus         6 k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A   85 (351)
T PLN02650          6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA   85 (351)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence            47888885 9999999999999999999998887655433211    1           111224556777889888765

>PRK12320 hypothetical protein; Provisional

Probab=95.87  E-value=0.017  Score=54.50  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=45.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc------CCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------GSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~------~s~~~~~~~advvi~~~p~   66 (226)
                      |||.|.| .|.+|+.+++.|.+.||+|++.+|++...   ...+++..      ....+++.++|+||-+.+.
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~   70 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPVLQELAGEADAVIHLAPV   70 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---ccCCceEEEccCCCHHHHHHhcCCCEEEEcCcc
Confidence            8999999 69999999999999999999999875432   11122111      1234555678998888753

>PLN02740 Alcohol dehydrogenase-like

Probab=95.85  E-value=0.092  Score=45.99  Aligned_cols=43  Identities=23%  Similarity=0.295  Sum_probs=37.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+
T Consensus       201 ~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga  244 (381)
T PLN02740        201 SVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI  244 (381)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence            58899999999999888888898 59999999999888877665

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.059  Score=44.43  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+
T Consensus         8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   48 (261)
T PRK08265          8 VAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA   48 (261)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4667775 999999999999999999999999887666543

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.84  E-value=0.013  Score=49.82  Aligned_cols=34  Identities=32%  Similarity=0.523  Sum_probs=29.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      +|.|||.|.-|..+|..|+++|++|+++++.+..
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            6899999999999999999999999999987663

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07538 hypothetical protein; Provisional

Probab=95.84  E-value=0.012  Score=52.15  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=32.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |+|.|||.|..|..+|..|.++|++|+++++.++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            7999999999999999999999999999998764

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.83  E-value=0.067  Score=44.65  Aligned_cols=40  Identities=20%  Similarity=0.328  Sum_probs=36.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++-|-|+ +.+|..+|+.|+++||+|++..|+.++++++++
T Consensus         8 ~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~   48 (265)
T COG0300           8 TALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK   48 (265)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence            4667787 899999999999999999999999999998865

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.047  Score=47.08  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=33.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      +|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus         9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~   48 (330)
T PRK06139          9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVA   48 (330)
T ss_pred             EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4667777 89999999999999999999999998876654

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.81  E-value=0.061  Score=46.06  Aligned_cols=43  Identities=30%  Similarity=0.424  Sum_probs=36.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|.|.|.+|..+++.+...|.+|++.++++++.+.+.+.|+
T Consensus       172 ~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~  214 (337)
T cd05283         172 RVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA  214 (337)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence            5788999999999888888889999999999888877766664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.81  E-value=0.18  Score=41.34  Aligned_cols=86  Identities=20%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCc---ccCCHHHHhh---hCCeEEEe-----cC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GAT---VGGSPAEVIK---KCTITIGM-----LA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~---~~~s~~~~~~---~advvi~~-----~p   65 (226)
                      ++|.=||||  |..++..+++.|.+|+..|.+++.++..+.+    |+.   ...+.+++.+   .-|+|+++     +|
T Consensus        61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            356778887  4589999999999999999999988776533    443   2445556655   57887765     56


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecC
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      +++.+   +   ......++||.+++..+
T Consensus       139 dp~~~---~---~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         139 DPESF---L---RACAKLVKPGGILFLST  161 (243)
T ss_pred             CHHHH---H---HHHHHHcCCCcEEEEec
Confidence            65543   3   33456677887766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
3doj_A	310	Structure Of Glyoxylate Reductase 1 From Arabidopsi		6e-64
3doj_A	310	Structure Of Glyoxylate Reductase 1 From Arabidopsi		9e-28
3pdu_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		3e-45
3pdu_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		2e-13
3pef_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		3e-42
3pef_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		2e-14
2uyy_A	316	Structure Of The Cytokine-Like Nuclear Factor N-Pac		4e-39
2uyy_A	316	Structure Of The Cytokine-Like Nuclear Factor N-Pac		3e-08
2i9p_A	319	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		2e-16
2gf2_A	296	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		2e-16
1vpd_A	299	X-Ray Crystal Structure Of Tartronate Semialdehyde		1e-15
4gbj_A	297	Crystal Structure Of Nad-Binding 6-Phosphogluconate		2e-11
1yb4_A	295	Crystal Structure Of The Tartronic Semialdehyde Red		4e-10
3cky_A	301	Structural And Kinetic Properties Of A Beta-Hydroxy		4e-10
3cky_A	301	Structural And Kinetic Properties Of A Beta-Hydroxy		1e-04
3q3c_A	299	Crystal Structure Of A Serine Dehydrogenase From Ps		4e-09
3obb_A	300	Crystal Structure Of A Possible 3-Hydroxyisobutyrat		5e-09
1wp4_A	289	Structure Of Tt368 Protein From Thermus Thermophilu		5e-09
4dll_A	320	Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re		5e-09
2cvz_A	289	Structure Of Hydroxyisobutyrate Dehydrogenase From		1e-07
2w8z_A	470	Geobacillus Stearothermophilus 6-Phosphogluconate D		1e-06
2w90_A	471	Geobacillus Stearothermophilus 6-Phosphogluconate D		1e-06
3fwn_A	480	Dimeric 6-Phosphogluconate Dehydrogenase Complexed		2e-06
2zya_A	480	Dimeric 6-Phosphogluconate Dehydrogenase Complexed		2e-06
2zyg_A	480	Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas		3e-06
3qha_A	296	Crystal Structure Of A Putative Oxidoreductase From		9e-06

>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310

Iteration: 1
 Score =  239 bits (611), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 130/150 (86%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 22  MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81
Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 82  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141
Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           SGSK+PAE GQL+IL+AG+K L   + P F
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAF 171

>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310

Iteration: 1
 Score =  119 bits (299), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 62/80 (77%)
Query: 141 DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXX 200
           DLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDMRLALALGDENAVSMP+         
Sbjct: 227 DLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFK 286
Query: 201 XXRSLGLGDNDFSAVFEVVK 220
             RSLGLGD DFSAV E VK
Sbjct: 287 KARSLGLGDLDFSAVIEAVK 306

>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 107/156 (68%)
Query: 4   GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
           GFLGLGIMG  ++ NL+R GF VTVWNR  +KC  LVA GA    SPAEV   C ITI M
Sbjct: 5   GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 64  LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123
           LADPAAA  V F   GVLE I  G+GYIDMSTVD ETS  I  A+T++GG FLEAPVSG+
Sbjct: 65  LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 124 KQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQ 159
           K+PAE G L+IL+AG++ L   A P F   G   L 
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLH 160

>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 46/80 (57%)
Query: 141 DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXX 200
           D G +ANPMFKGKG  +L   +  +FPLKH QKD+RLA+ LGD     +           
Sbjct: 207 DAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFK 266
Query: 201 XXRSLGLGDNDFSAVFEVVK 220
             R+ G  D DF+AVF V++
Sbjct: 267 RARAAGHADEDFAAVFRVLE 286

>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 111/158 (70%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           + GF+GLGIMG A++ NL++ G  VT+WNR+  K +EL A GA    +P EV++ C +T 
Sbjct: 3   KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
            MLADPAAA  V F K GVLE I  G+GY+DMSTVD  TS +I  A+ +KGG FLEAPVS
Sbjct: 63  AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122
Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQ 159
           GSK+PAE G L+IL+AG+++L   A P F+  G  ++ 
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIH 160

>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 46/78 (58%)
Query: 143 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXX 202
           G +ANPMF  KG  +   N+APAFPLKH QKD+RLA+ALGD     +             
Sbjct: 209 GAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGA 268
Query: 203 RSLGLGDNDFSAVFEVVK 220
           R+ G GD DFSA+F+  +
Sbjct: 269 RAAGFGDEDFSAIFKTYE 286

>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316

Iteration: 1
 Score =  157 bits (398), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 104/155 (67%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 32  KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVS
Sbjct: 92  ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
           G++Q +  G LVIL+AG++ L    +  F+  G T
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 186

>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 113 GHFLEAPVSGSKQPAETGQ-----LVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFP 167
           G F+     G      TGQ     L IL+ G+     +A+     K   +LQ N+ P F 
Sbjct: 208 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQ-----LASIFLDQKCQNILQGNFKPDFY 262
Query: 168 LKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFE 217
           LK+ QKD+RLA+ALGD      P+           ++L   DND SAV+ 
Sbjct: 263 LKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 312

>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    
Sbjct: 23  MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 82
Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APV
Sbjct: 83  ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 142
Query: 121 SGSKQPAETGQLVILSAGEKD 141
           SG    A +G L  +  G +D
Sbjct: 143 SGGVGAARSGNLTFMVGGVED 163

>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    
Sbjct: 1   MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 60
Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APV
Sbjct: 61  ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKD 141
           SG    A +G L  +  G +D
Sbjct: 121 SGGVGAARSGNLTFMVGGVED 141

>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 74/139 (53%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           +VGF+GLGI GK  S NLL+ G+ + V +R      +++A GA    +   + ++C + I
Sbjct: 7   KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             L +      V   + G++E   PG   ID S++    S +IS A+ +KG   L+APVS
Sbjct: 67  TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 122 GSKQPAETGQLVILSAGEK 140
           G +  A  G L +   G+K
Sbjct: 127 GGEPKAIDGTLSVXVGGDK 145

>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++ FLGLG +G  I+  LL  G+++ VWNRT SK + L   GATV  +  + I    I  
Sbjct: 7   KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
            +LAD AA   +   +  ++E++     ++  ST+  ETS ++++     G H++ AP+
Sbjct: 67  SVLADDAAVEELFSXE--LVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPI 123

>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTIT 60
           ++GF+GLGI G   ++NL R G ++ V   T+    DEL++ GA    +  +V +   I 
Sbjct: 5   KLGFIGLGIXGSPXAINLARAGHQLHVT--TIGPVADELLSLGAVNVETARQVTEFADII 62
Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
              + D      V+F + G  +    GK  +D S++    + + ++ +   G  +L+APV
Sbjct: 63  FIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPV 122
Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK--GKGPTMLQSN 161
           SG +  A  G L I   GE+ +     P+F   GK  T++  N
Sbjct: 123 SGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGN 165

>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           +++GF+GLG MGK +++NLL+ G  V  ++   +    +VA GA    +  +V     I 
Sbjct: 5   IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDII 64
Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
              L +     +V+   GGVL     G   +DMS+V   +++K+++    KG  +++APV
Sbjct: 65  FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPV 124
Query: 121 SGSKQPAETGQLVIL 135
           SG  + AE G L I+
Sbjct: 125 SGGTKGAEAGTLTIM 139

>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 157 MLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 216
           ++  ++A  F +  Q KD+ LAL  G E  V +P+           R++GLG  D SAV 
Sbjct: 227 IMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVI 286
Query: 217 EVVKDL 222
           +V + +
Sbjct: 287 KVWEQM 292

>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++ F+GLG  G   + NLL+ G+ + V++   S  D LVA GA+   S  + ++   + I
Sbjct: 4   QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             L        +  D  G+L  I PG   ++ ST+   ++ KI  A   +G   L+APVS
Sbjct: 64  SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 123
Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQS 160
           G    A  G L     G+ +    A P+F+  G  +  +
Sbjct: 124 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHA 162

>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++ F+GLG  G   + NLL+ G+ + V++   S  D LVA GA+   S  + ++   + I
Sbjct: 5   QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             L        +  D  G+L  I PG   ++ ST+   ++ KI  A   +G   L+APVS
Sbjct: 65  SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 124
Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQS 160
           G    A  G L     G+ +    A P+F+  G  +  +
Sbjct: 125 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHA 163

>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 21/148 (14%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
           +V F+GLG MG  ++ +L R  F   VWNRT  K    + H    G         + A V
Sbjct: 3   KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54  IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113
           I  C  T   + + A AL     +G           ++D ++ + E S +++  +  KG 
Sbjct: 59  IFTCLPTTREVYEVAEALYPYLREGTY---------WVDATSGEPEASRRLAERLREKGV 109
Query: 114 HFLEAPVSGSKQPAETGQLVILSAGEKD 141
            +L+APVSG    AE G L ++  G ++
Sbjct: 110 TYLDAPVSGGTSGAEAGTLTVMLGGPEE 137

>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++ FLG G  G   +  L   G+ + VWNRT ++   L A GAT+        +   I +
Sbjct: 33  KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             L + A    V+F + GV     PG  ++D +++    +   +  + + G   L+ PVS
Sbjct: 93  SXLENGAVVQDVLFAQ-GVAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVS 151
Query: 122 GSKQPAETGQLVILSAGE 139
           G    AE G LVI + G+
Sbjct: 152 GGTVGAEQGTLVIXAGGK 169

>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 21/148 (14%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
           +V F+GLG  G   + +L R  F   VWNRT  K    + H    G         + A V
Sbjct: 3   KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54  IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113
           I  C  T   + + A AL     +G           ++D ++ + E S +++  +  KG 
Sbjct: 59  IFTCLPTTREVYEVAEALYPYLREGTY---------WVDATSGEPEASRRLAERLREKGV 109
Query: 114 HFLEAPVSGSKQPAETGQLVILSAGEKD 141
            +L+APVSG    AE G L +   G ++
Sbjct: 110 TYLDAPVSGGTSGAEAGTLTVXLGGPEE 137

>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATVGGSPAEVIKKCTI 59
           ++G +GL +MGK +++N+   G+ V V+NR   K DE +  A G  + G+ +        
Sbjct: 6   QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYS-----IEE 60
Query: 60  TIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITS 110
            +  L  P   L +V  K G      +EQ+ P    G   ID      + + + ++ +  
Sbjct: 61  FVNALEKPRKILLMV--KAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAE 118
Query: 111 KGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKG 152
            G HF+   VSG ++ A  G   I+  G+K+   +  P+F+ 
Sbjct: 119 LGIHFIGTGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEA 159

>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATVGGSPAEVIKKCTI 59
           ++G +GL +MGK +++N+   G+ V V+NR   K DE +  A G  + G+ +        
Sbjct: 7   QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYS-----IEE 61
Query: 60  TIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITS 110
            +  L  P   L +V  K G      +EQ+ P    G   ID      + + + ++ +  
Sbjct: 62  FVNALEKPRKILLMV--KAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAE 119
Query: 111 KGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
            G HF+   VSG ++ A  G   I+  G+K+   +  P+F+
Sbjct: 120 LGIHFIGTGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFE 159

>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++G +G+ +MG+ +++N+   G+ V+++NR+  K +E++A        P   +K+    +
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF---V 73
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-------DHETSIKISRAITSKGGH 114
             L  P   L +V    G    I   K Y+D   +         + +I+ +R ++++G +
Sbjct: 74  ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 115 FLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           F+   VSG ++ A  G   I+  G+K+   +  P+ 
Sbjct: 134 FIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPIL 168

>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++G +G+ +MG+ +++N+   G+ V+++NR+  K +E++A        P   +K+    +
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF---V 73
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-------DHETSIKISRAITSKGGH 114
             L  P   L +V    G    I   K Y+D   +         + +I+ +R ++++G +
Sbjct: 74  ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 115 FLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMF 150
           F+   VSG ++ A  G   I+  G+K+   +  P+ 
Sbjct: 134 FIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPIL 168

>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 11/157 (7%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++G +G+ +MG+ +++N+   G+ V+V+NR+  K +E++A        P   +++    +
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQEF---V 73
Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-------DHETSIKISRAITSKGGH 114
             L  P   L +V    G    I   K Y+D   +         + +I+ +R ++++G +
Sbjct: 74  ESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 115 FLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           F+   VSG ++    G   I+  G+K+   +  P+ K
Sbjct: 134 FIGTGVSGGEEGTLKGP-SIMPGGQKEAYELVAPILK 169

>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           +++G++GLG MG  ++  +      VTV++  +     L   GAT+  S A+V     I 
Sbjct: 16  LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIH 75
Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I +L D A    VV +  G      PG      ST+   T+++++R + ++  H ++APV
Sbjct: 76  ITVL-DDAQVREVVGELAG---HAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPV 131
Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SG    A  G+L  +   ++++     P FK
Sbjct: 132 SGGAAAAARGELATMVGADREVYERIKPAFK 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	1e-57
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	4e-22
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	2e-57
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	1e-22
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	4e-57
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	2e-22
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	5e-56
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	3e-22
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	3e-52
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	6e-19
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	2e-43
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	5e-14
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	9e-42
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	4e-14
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	2e-41
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	2e-14
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	2e-41
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	2e-11
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	1e-40
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	2e-11
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	5e-40
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	5e-12
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	2e-37
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	6e-13
3qha_A	296	Putative oxidoreductase; seattle structural genomi	1e-34
3qha_A	296	Putative oxidoreductase; seattle structural genomi	2e-05
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	7e-29
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	8e-28
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	8e-11
4ezb_A	317	Uncharacterized conserved protein; structural geno	6e-25
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	8e-25
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	1e-12
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	3e-12
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	9e-12
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	1e-11
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	1e-10
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	1e-10
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	3e-10
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	3e-10
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	4e-09
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	9e-09
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	1e-07
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	5e-07
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	2e-06
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	4e-06
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	3e-05
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	4e-05
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	5e-05
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	9e-04

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316

 Score =  183 bits (468), Expect = 1e-57
 Identities = 75/151 (49%), Positives = 102/151 (67%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT
Sbjct: 31  KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDIT 90

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
              ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPV
Sbjct: 91  FACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPV 150

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SG++Q +  G LVIL+AG++ L    +  F+
Sbjct: 151 SGNQQLSNDGMLVILAAGDRGLYEDCSSCFQ 181

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316

 Score = 91.1 bits (227), Expect = 4e-22
 Identities = 36/76 (47%), Positives = 49/76 (64%)

Query: 143 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 202
           G +A+     K   +LQ N+ P F LK+ QKD+RLA+ALGD      P+AAAANE +K+A
Sbjct: 238 GQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRA 297

Query: 203 RSLGLGDNDFSAVFEV 218
           ++L   DND SAV+  
Sbjct: 298 KALDQSDNDMSAVYRA 313

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310

 Score =  183 bits (466), Expect = 2e-57
 Identities = 118/151 (78%), Positives = 130/151 (86%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 22  MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 82  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SGSK+PAE GQL+IL+AG+K L   + P F 
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAFD 172

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310

 Score = 92.3 bits (230), Expect = 1e-22
 Identities = 66/78 (84%), Positives = 71/78 (91%)

Query: 143 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 202
           G + NPMFKGKGP+M +S+Y PAFPLKHQQKDMRLALALGDENAVSMP+AAAANEAFKKA
Sbjct: 229 GAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKA 288

Query: 203 RSLGLGDNDFSAVFEVVK 220
           RSLGLGD DFSAV E VK
Sbjct: 289 RSLGLGDLDFSAVIEAVK 306

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287

 Score =  181 bits (463), Expect = 4e-57
 Identities = 83/151 (54%), Positives = 108/151 (71%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            + GF+GLGIMG A++ NL++ G  VT+WNR+  K +EL A GA    +P EV++ C +T
Sbjct: 2   QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVT 61

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
             MLADPAAA  V F K GVLE I  G+GY+DMSTVD  TS +I  A+ +KGG FLEAPV
Sbjct: 62  FAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPV 121

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SGSK+PAE G L+IL+AG+++L   A P F+
Sbjct: 122 SGSKKPAEDGTLIILAAGDRNLYDEAMPGFE 152

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287

 Score = 91.4 bits (228), Expect = 2e-22
 Identities = 44/78 (56%), Positives = 55/78 (70%)

Query: 143 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 202
           G +ANPMF  KG  +   N+APAFPLKH QKD+RLA+ALGD     +  +AAANE FK A
Sbjct: 209 GAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGA 268

Query: 203 RSLGLGDNDFSAVFEVVK 220
           R+ G GD DFSA+F+  +
Sbjct: 269 RAAGFGDEDFSAIFKTYE 286

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287

 Score =  178 bits (455), Expect = 5e-56
 Identities = 91/149 (61%), Positives = 105/149 (70%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
            GFLGLGIMG  ++ NL+R GF VTVWNR  +KC  LVA GA    SPAEV   C ITI 
Sbjct: 4   YGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIA 63

Query: 63  MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
           MLADPAAA  V F   GVLE I  G+GYIDMSTVD ETS  I  A+T++GG FLEAPVSG
Sbjct: 64  MLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSG 123

Query: 123 SKQPAETGQLVILSAGEKDLGGIANPMFK 151
           +K+PAE G L+IL+AG++ L   A P F 
Sbjct: 124 TKKPAEDGTLIILAAGDQSLFTDAGPAFA 152

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287

 Score = 91.1 bits (227), Expect = 3e-22
 Identities = 42/78 (53%), Positives = 55/78 (70%)

Query: 143 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 202
           G +ANPMFKGKG  +L   +  +FPLKH QKD+RLA+ LGD     +  AA ANE+FK+A
Sbjct: 209 GAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRA 268

Query: 203 RSLGLGDNDFSAVFEVVK 220
           R+ G  D DF+AVF V++
Sbjct: 269 RAAGHADEDFAAVFRVLE 286

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306

 Score =  170 bits (432), Expect = 3e-52
 Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 2/151 (1%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            +V  +GLG MG  ++  LL+ G +V +WNR+  K   LVA GA +  S    +     T
Sbjct: 10  FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPAT 69

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I +L D  A   V+   G  + +    +  +D +T   +  + +   +   GGH+++  +
Sbjct: 70  IFVLLDNHATHEVLGMPG--VARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMI 127

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
               +     +   +  G+++       + +
Sbjct: 128 VAYPRNVGHRESHSIHTGDREAFEQHRALLE 158

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306

 Score = 82.4 bits (204), Expect = 6e-19
 Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 1/85 (1%)

Query: 143 GGIANPMFKGKGPTMLQSNY-APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 201
                   +     +   ++      L                  V  P+  A  +  ++
Sbjct: 216 RFFVADALEEAVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQR 275

Query: 202 ARSLGLGDNDFSAVFEVVKDLKRSS 226
           A ++G GD D +A  +     +   
Sbjct: 276 AAAMGYGDQDIAATTKSFAREQEEG 300

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299

 Score =  146 bits (372), Expect = 2e-43
 Identities = 52/151 (34%), Positives = 83/151 (54%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M+VGF+GLGIMGK +S NLL+ G+ + V +R      +++A GA    +   + ++C + 
Sbjct: 6   MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 65

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML +      V   + G++E   PG   IDMS++    S +IS A+ +KG   L+APV
Sbjct: 66  ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 125

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SG +  A  G L ++  G+K +      + K
Sbjct: 126 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMK 156

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299

 Score = 68.7 bits (169), Expect = 5e-14
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 153 KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDF 212
           K P ++  N+ P F +    KD+  AL         +P+ AA  E  +  R+ G G++D 
Sbjct: 223 KAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDH 282

Query: 213 SAVFEVVKDL 222
           SA+    + L
Sbjct: 283 SALACYYEKL 292

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295

 Score =  142 bits (360), Expect = 9e-42
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 1/151 (0%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M++GF+GLGIMG  +++NL R G ++ V        DEL++ GA    +  +V +   I 
Sbjct: 4   MKLGFIGLGIMGSPMAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADII 62

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
             M+ D      V+F + G  +    GK  +DMS++    + + ++ +   G  +L+APV
Sbjct: 63  FIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPV 122

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SG +  A  G L I+  GE+ +     P+F 
Sbjct: 123 SGGEIGAREGTLSIMVGGEQKVFDRVKPLFD 153

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 19/70 (27%), Positives = 32/70 (45%)

Query: 153 KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDF 212
            G  M+   + P F +   QKD+ LAL      A+++P  A   E F    + G    D 
Sbjct: 220 HGERMINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDH 279

Query: 213 SAVFEVVKDL 222
           SA+ + ++ +
Sbjct: 280 SAMVQALELM 289

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320

 Score =  142 bits (360), Expect = 2e-41
 Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 1/157 (0%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           + FLG G MG  ++  L   G+ + VWNRT ++   L A GAT+        +   I + 
Sbjct: 34  ITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVS 93

Query: 63  MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
           ML + A    V+F + GV   + PG  ++DM+++    +   +  + + G   L+ PVSG
Sbjct: 94  MLENGAVVQDVLFAQ-GVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSG 152

Query: 123 SKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQ 159
               AE G LVI++ G+      + P+ K  G     
Sbjct: 153 GTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRATHV 189

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320

 Score = 69.9 bits (172), Expect = 2e-14
 Identities = 22/70 (31%), Positives = 31/70 (44%)

Query: 153 KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDF 212
            G  M++ ++AP   L  Q KDMR ALA   E     PI     + + +    GL D D 
Sbjct: 247 HGQRMVERDFAPRARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQ 306

Query: 213 SAVFEVVKDL 222
           S +F  +   
Sbjct: 307 SGLFVELASR 316

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296

 Score =  141 bits (358), Expect = 2e-41
 Identities = 47/151 (31%), Positives = 77/151 (50%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    
Sbjct: 1   MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APV
Sbjct: 61  ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SG    A +G L  +  G +D    A  +  
Sbjct: 121 SGGVGAARSGNLTFMVGGVEDEFAAAQELLG 151

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 147 NPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 206
           NP+          +NY   F      KD+ LA          + + + A++ ++   + G
Sbjct: 219 NPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKG 278

Query: 207 LGDNDFSAVFEVVKD 221
               DFS+VF+ +++
Sbjct: 279 YSKKDFSSVFQFLRE 293

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301

 Score =  139 bits (353), Expect = 1e-40
 Identities = 44/151 (29%), Positives = 77/151 (50%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           +++GF+GLG MGK +++NLL+ G  V  ++   +    +VA GA    +  +V     I 
Sbjct: 5   IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDII 64

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
              L +     +V+   GGVL     G   +DMS+V   +++K+++    KG  +++APV
Sbjct: 65  FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPV 124

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SG  + AE G L I+    + +     P+  
Sbjct: 125 SGGTKGAEAGTLTIMVGASEAVFEKIQPVLS 155

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 149 MFKGKGPT-MLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGL 207
             + K    ++  ++A  F +  Q KD+ LAL  G E  V +P+ A A + F+  R++GL
Sbjct: 218 AMEAKMEKFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGL 277

Query: 208 GDNDFSAVFEVVKDL 222
           G  D SAV +V + +
Sbjct: 278 GREDMSAVIKVWEQM 292

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303

 Score =  131 bits (332), Expect = 2e-37
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 1/152 (0%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTI 59
             VG +GLG MG   + + LR G      +     C  L+A GA     S  E       
Sbjct: 8   FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDA 67

Query: 60  TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119
            + ++ + A    V+F + GV   + PG   +  ST+    + +I+ A+T+   + L+AP
Sbjct: 68  LVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAP 127

Query: 120 VSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           VSG    A  G++ ++++G +       P+  
Sbjct: 128 VSGGAVKAAQGEMTVMASGSEAAFTRLKPVLD 159

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303

 Score = 65.7 bits (161), Expect = 6e-13
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 149 MFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLG 208
           MF+ +   ++  +Y P   +    KD+ L           +P+A+ A   F  A + G G
Sbjct: 223 MFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYG 282

Query: 209 DNDFSAVFEVVKDL 222
             D SAV ++    
Sbjct: 283 KEDDSAVIKIFSGE 296

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296

 Score =  123 bits (312), Expect = 1e-34
 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           +++G++GLG MG  ++  +      VTV++  +     L   GAT+  S A+V     I 
Sbjct: 16  LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIH 75

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I +L D A    VV     +     PG      ST+   T+++++R + ++  H ++APV
Sbjct: 76  ITVL-DDAQVREVVG---ELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPV 131

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SG    A  G+L  +   ++++     P FK
Sbjct: 132 SGGAAAAARGELATMVGADREVYERIKPAFK 162

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 134 ILSAGEKDLGGIANPMFKGKGPTMLQSN--YAPAFPLKH-QQKDMRLALALGDENAVSMP 190
           ++   +   GG    M +     +   N  Y P    +   +KD+ LALALG+  +V +P
Sbjct: 215 VVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLP 274

Query: 191 IAAAANEAFKKARSLGLGDND 211
           +A  A E       +   + +
Sbjct: 275 LARLAYEGLAAGLGVPHKEKE 295

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312

 Score =  109 bits (273), Expect = 7e-29
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 9/146 (6%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA--HGATVGGSPAEVIKKC 57
           M++GF+G G    AI+  L + G   +  ++   ++     A   G +   S AEV  +C
Sbjct: 25  MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGEC 84

Query: 58  TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHF 115
            +   ++    AAL V          +C G  Y D ++        I   I+       +
Sbjct: 85  DVIFSLVT-AQAALEVA---QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQY 140

Query: 116 LEAPVSGSKQPAETGQLVILSAGEKD 141
               V  + +P      +++      
Sbjct: 141 AAVAVMSAVKPHGHRVPLVVDGDGAR 166

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289

 Score =  105 bits (265), Expect = 8e-28
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITI 61
           V F+GLG MG  ++ +L R      VWNRT  K        G+     P E + +  +  
Sbjct: 4   VAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFGSEA--VPLERVAEARVIF 60

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
             L        V      +   +  G  ++D ++ + E S +++  +  KG  +L+APVS
Sbjct: 61  TCLPTTREVYEVA---EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS 117

Query: 122 GSKQPAETGQLVILSAGEKD 141
           G    AE G L ++  G ++
Sbjct: 118 GGTSGAEAGTLTVMLGGPEE 137

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289

 Score = 59.5 bits (145), Expect = 8e-11
 Identities = 13/69 (18%), Positives = 26/69 (37%)

Query: 154 GPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFS 213
              +L   +   F L    KD+ +A+ + D      P+   A E ++ A+     D D  
Sbjct: 215 PQRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHV 274

Query: 214 AVFEVVKDL 222
               +++  
Sbjct: 275 EALRLLERW 283

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317

 Score = 98.8 bits (246), Expect = 6e-25
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 11/148 (7%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCD------ELVAHGATVGGSPAEV 53
             + F+G G   ++I+  L      ++  ++   +            A            
Sbjct: 25  TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84

Query: 54  IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113
           I    + + ++   AA  +V          +     +ID+++V  +T    + AI +  G
Sbjct: 85  IACADVVLSLVV-GAATKAVA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKG 140

Query: 114 HFLEAPVSGSKQPAETGQLVILSAGEKD 141
            F+E  V     P      ++++     
Sbjct: 141 SFVEGAVMARVPPYAEKVPILVAGRRAV 168

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264

 Score = 97.3 bits (242), Expect = 8e-25
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 26/221 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           + VGF+G G + + ++  L   G +V       S      A    V  +  E +  C + 
Sbjct: 1   LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I  +  P  AL      G  +  I     Y+D++ +  ET    S  I   G  F++A +
Sbjct: 61  ISAVT-PGVALGAARRAGRHVRGI-----YVDINNISPETVRMASSLIEKGG--FVDAAI 112

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALA 180
            GS +       +I S  + +     N    G    +       A  +K  +        
Sbjct: 113 MGSVRRKGADIRIIASGRDAEEFMKLNRY--GLNIEVRGREPGDASAIKMLR-------- 162

Query: 181 LGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 221
               ++ +  ++A   E    A  LGL +     V E+++ 
Sbjct: 163 ----SSYTKGVSALLWETLTAAHRLGLEE----DVLEMLEY 195

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M+VG +GLG+MG  +++N+   GFKV V+NRT SK +E +   A+       +    T+ 
Sbjct: 2   MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANAS-APFAGNLKAFETME 60

Query: 61  --IGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAIT 109
                L  P  AL +V  + G      +EQ+      G   +D      +   + ++ + 
Sbjct: 61  AFAASLKKPRKALILV--QAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLE 118

Query: 110 SKGGHFLEAPVSGSKQPAETG 130
           + G  FL   +SG ++ A  G
Sbjct: 119 AAGLRFLGMGISGGEEGARKG 139

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 63.3 bits (153), Expect = 3e-12
 Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 8/163 (4%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCT 58
             +  +G G +   ++  L R GF++  V++RT     EL     A      AEV     
Sbjct: 11  TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAK 70

Query: 59  ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118
           + I  L D A A  ++    G++E        +  +        +           +   
Sbjct: 71  LYIVSLKDSAFA-ELL---QGIVEGKREEALMVHTAGSIPMNVWEGHVPHYGV--FYPMQ 124

Query: 119 PVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSN 161
             S  ++         + A   +       +       +  ++
Sbjct: 125 TFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDAD 167

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358

 Score = 62.4 bits (152), Expect = 9e-12
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 23/133 (17%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M++G +GLG MG  +   L + G +  V++  ++    L   G     S  E   K    
Sbjct: 23  MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAK---- 78

Query: 61  IGMLADPAAALSVVFDKGG----VLEQICP--GKGYIDMSTVDH-----ETSIKISRAIT 109
              L  P     +V         +L+++ P      I    +D      +  I+ +  + 
Sbjct: 79  ---LVKPRVVWLMV--PAAVVDSMLQRMTPLLAANDI---VIDGGNSHYQDDIRRADQMR 130

Query: 110 SKGGHFLEAPVSG 122
           ++G  +++   SG
Sbjct: 131 AQGITYVDVGTSG 143

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            +VG LG G   ++++  L+ +GFKV V +R   +   L    A V     E +    + 
Sbjct: 29  PKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVI 87

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST 95
              +A      S +      L     GK  +D+S 
Sbjct: 88  F--VAVFREHYSSLCSLSDQL----AGKILVDVSN 116

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 32/130 (24%), Positives = 67/130 (51%), Gaps = 14/130 (10%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++G +G+ +MG+ +++N+   G+ V+++NR+  K +E++A        P   +K+    +
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF---V 73

Query: 62  GMLADPAAALSVVFDKGG-----VLEQICPG--KG--YIDMSTVDHETSIKISRAITSKG 112
             L  P   L +V  K G      ++ + P   KG   ID      + +I+ +R ++++G
Sbjct: 74  ESLETPRRILLMV--KAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEG 131

Query: 113 GHFLEAPVSG 122
            +F+   VSG
Sbjct: 132 FNFIGTGVSG 141

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
             G +G+ +MGK +++N+   G+ V ++NRT SK +E+            + +++    +
Sbjct: 7   NFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF---V 63

Query: 62  GMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITSKG 112
           G L  P   + +V  + G      ++ + P    G   ID        +++ +  +   G
Sbjct: 64  GSLEKPRRIMLMV--QAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSG 121

Query: 113 GHFLEAPVSG 122
            +F+   VSG
Sbjct: 122 INFIGTGVSG 131

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 23/135 (17%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA---HGATVGG--SPAEVIKK 56
           ++  +GL +MG+ + +N+  +GF V  +NRT+SK D+ +A    G  V G  S  E++ K
Sbjct: 4   DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSK 63

Query: 57  CTITIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRA 107
                  L  P   + +V  K G      +E++ P    G   ID    ++  +++  R 
Sbjct: 64  -------LKKPRRIILLV--KAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRD 114

Query: 108 ITSKGGHFLEAPVSG 122
           +  KG  F+ + VSG
Sbjct: 115 LKDKGILFVGSGVSG 129

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA---HGATVGG--SPAEVIKK 56
           + G +GL +MG+ + +N   +GF V  +NRT SK D  +A    G ++ G  S  + I K
Sbjct: 12  DFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISK 71

Query: 57  CTITIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRA 107
                  L  P   + +V  K G     ++ QI P    G   ID        S +    
Sbjct: 72  -------LKRPRKVMLLV--KAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEE 122

Query: 108 ITSKGGHFLEAPVSG 122
           +  KG  F+ + VSG
Sbjct: 123 LKKKGILFVGSGVSG 137

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276

 Score = 54.4 bits (130), Expect = 4e-09
 Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 24/213 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTI 59
           + + F+G G + +   +  L++ +++  + +R++ +   L         +  +  +   +
Sbjct: 3   LVLNFVGTGTLTRFF-LECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGV 61

Query: 60  TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119
              ++ D                 +  G   +   +     S +I +       H   + 
Sbjct: 62  VFVIVPDRYIKTVA--------NHLNLGDAVLVHCSGFL--SSEIFKKSGRASIHPNFSF 111

Query: 120 VSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLAL 179
            S  K      Q+V    G++    I   + +                      + + A 
Sbjct: 112 SSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP-----------SEKKKAY 160

Query: 180 ALGDENAVSMPIAAAANEAFKKARSLGLGDNDF 212
            L    A + P+A A   + +    LGL + + 
Sbjct: 161 HLAAVIASNFPVALAY-LSKRIYTLLGLDEPEL 192

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201

 Score = 52.7 bits (126), Expect = 9e-09
 Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 9/132 (6%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
             V   G G  GK++ + +L+ G+ V   +R       L+  GA V    +E   +  + 
Sbjct: 20  GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVS-SLLPRGAEV-LCYSEAASRSDVI 77

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
             +LA        + +    L     G+  ID+S          S            A V
Sbjct: 78  --VLAVHREHYDFLAELADSL----KGRVLIDVSNNQKMNQYPES-NAEYLAQLVPGAHV 130

Query: 121 SGSKQPAETGQL 132
             +        L
Sbjct: 131 VKAFNTISAWAL 142

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 13/145 (8%)

Query: 3   VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           V  LG  G MG  I+  +  +   +          D L   G  +       I +  +  
Sbjct: 14  VAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDEADVV- 71

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
            +LA P   +  V +   ++ ++ PG   + +        +   RA      +F+  P  
Sbjct: 72  -VLALPDNIIEKVAE--DIVPRVRPGTIVLILDAAAPYAGVMPERA---DITYFIGHP-- 123

Query: 122 GSKQPAETGQLVILSAGEKDLGGIA 146
               P         +A     GGIA
Sbjct: 124 --CHPPLFNDETDPAARTDYHGGIA 146

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 48.2 bits (114), Expect = 5e-07
 Identities = 13/75 (17%), Positives = 27/75 (36%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
          M++  LG G +G+ ++  L   G +VT+  R            A      ++ + +    
Sbjct: 20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHV 79

Query: 61 IGMLADPAAALSVVF 75
                  AA + + 
Sbjct: 80 HLAAFADVAAGAELV 94

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 27/141 (19%), Positives = 39/141 (27%), Gaps = 6/141 (4%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           ME+   G G MG+AI  N    G +VT +                V   P   +      
Sbjct: 20  MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAV---PYPALAA---L 73

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
               A       VV     +             S+   E   ++  +   K  +   A  
Sbjct: 74  AKQYATQLKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAAT 133

Query: 121 SGSKQPAETGQLVILSAGEKD 141
             S Q        +L AG  D
Sbjct: 134 LQSGQVNGKEPTTVLVAGNDD 154

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTI 59
          M++G +G+G M  AI   L +   ++ +   +L +  E+          S  ++I +  +
Sbjct: 4  MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDL 63

Query: 60 TI 61
           I
Sbjct: 64 VI 65

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 6  LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEV---------IKK 56
          LG G + +     L  +G KVTV  RTL    +L A          +V         + K
Sbjct: 9  LGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAK 68

Query: 57 CTITIGML 64
            + I ++
Sbjct: 69 HDLVISLI 76

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 14/85 (16%)

Query: 6   LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTI----- 59
           LG G   +A+   L++ G KV +WNRT  K  +L       V  SP EVI K  +     
Sbjct: 135 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTT 194

Query: 60  TIGMLADPAAALS--------VVFD 76
           ++G+  +     +        VV D
Sbjct: 195 SVGLKDEDPEIFNYDLIKKDHVVVD 219

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Length = 212

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 1   MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------GATVGGSPAE 52
           M V  LG  G +GK +++ L   G ++ V +R   K +   A         +  G    +
Sbjct: 1   MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNED 60

Query: 53  VIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDM 93
             + C I   +      A+    D   +L +       + +
Sbjct: 61  AAEACDI-AVLTIPWEHAIDTARDLKNILREKIVVSPLVPV 100

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 3  VGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKC 57
          +GF+G G MG A+   ++        ++   +   +        +G T      EV K  
Sbjct: 5  IGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNA 64

Query: 58 TITI 61
           I I
Sbjct: 65 DILI 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	100.0
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	100.0
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	100.0
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	100.0
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	100.0
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	100.0
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	100.0
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	100.0
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	100.0
3qha_A	296	Putative oxidoreductase; seattle structural genomi	100.0
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	100.0
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	100.0
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	100.0
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	100.0
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	100.0
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	100.0
4ezb_A	317	Uncharacterized conserved protein; structural geno	100.0
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	100.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.96
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.96
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.96
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.95
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.94
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.94
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.94
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.93
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.93
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.93
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.91
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.9
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.9
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.9
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.9
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.88
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.88
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.86
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.86
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.86
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.84
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.82
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.82
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.8
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.8
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.79
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.79
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.78
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.77
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.76
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.76
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.75
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.75
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.73
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.72
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.72
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.72
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.72
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.71
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.7
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.7
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	99.7
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.68
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.67
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.65
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.65
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.45
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.64
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.63
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.63
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	99.63
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.61
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.6
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.6
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.6
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.6
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.59
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.59
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.59
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.59
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.58
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.58
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.58
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.58
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.57
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.57
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.57
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.57
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.57
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.57
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.56
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.56
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.56
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.56
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.55
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.55
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.55
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.54
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.53
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.53
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.53
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.52
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.52
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.52
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.52
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.51
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.51
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.5
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.5
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.5
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.5
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.49
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.49
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.49
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.48
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.48
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	99.47
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.46
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.45
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.45
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.44
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.43
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.41
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.4
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.37
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	99.34
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.34
2duw_A	145	Putative COA-binding protein; ligand binding prote	99.33
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.3
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.3
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	99.27
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.26
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	99.25
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	99.25
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	99.24
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.24
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	99.23
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	99.23
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	99.23
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	99.22
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	99.22
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	99.22
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	99.2
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	99.2
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.2
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	99.2
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	99.19
3c85_A	183	Putative glutathione-regulated potassium-efflux S	99.18
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	99.18
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	99.18
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	99.16
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.16
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	99.15
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	99.15
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.14
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	99.14
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.13
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.12
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	99.1
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.1
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	99.1
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	99.09
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	99.08
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	99.08
1ydw_A	362	AX110P-like protein; structural genomics, protein	99.08
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	99.07
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	99.07
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	99.05
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.04
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.03
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	99.01
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	99.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.0
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.0
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	99.0
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.99
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.99
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.99
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.99
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.98
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.98
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.97
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.96
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.94
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.94
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.94
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.93
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.92
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.91
4had_A	350	Probable oxidoreductase protein; structural genomi	98.91
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.91
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.9
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.9
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.9
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.9
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.89
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.88
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.88
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.87
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.86
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.86
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	98.85
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.84
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.84
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.84
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.83
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.83
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.83
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.82
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.81
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.81
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.8
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.79
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.77
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.76
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.76
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.75
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.75
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.75
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.75
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	98.74
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.74
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.74
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.72
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.72
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.71
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.71
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.71
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.7
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.7
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.69
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.68
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.68
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.68
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	98.67
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.65
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.64
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.61
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.61
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.6
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	98.58
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.56
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.55
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.53
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	98.52
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.51
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.49
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.49
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.48
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	98.48
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.48
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.47
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.45
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.43
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.43
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.41
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.4
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	98.39
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	98.39
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.39
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.38
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.38
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	98.37
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.35
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.35
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.33
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.32
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	98.31
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.29
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.29
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	98.29
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.28
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.27
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.27
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.26
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.26
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	98.25
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.25
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	98.23
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.23
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.22
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.22
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	98.21
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	98.2
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.19
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.19
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.19
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.16
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	98.16
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	98.15
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	98.14
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.14
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.13
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	98.13
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	98.13
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.12
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	98.09
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	98.09
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.08
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.08
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.06
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.06
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.05
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.04
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	98.03
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.02
4g65_A	461	TRK system potassium uptake protein TRKA; structur	98.02
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.01
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.98
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.97
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.95
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.93
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.92
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.9
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.88
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.84
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.83
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.81
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.78
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.76
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.76
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.76
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.75
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.73
1lnq_A	336	MTHK channels, potassium channel related protein;	97.72
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.7
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.69
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.67
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.67
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.63
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.62
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.6
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.59
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.58
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.53
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	97.51
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.43
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.43
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.42
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.41
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.41
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.39
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.37
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.36
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.35
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.35
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.34
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.34
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.33
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.32
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.32
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.31
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.31
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.3
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.3
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.3
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.3
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.29
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.29
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.29
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.29
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.28
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.27
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.27
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	97.26
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.26
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.25
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.25
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.23
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.22
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	97.22
2csu_A	457	457AA long hypothetical protein; structural genomi	97.21
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	97.21
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.19
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.19
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	97.19
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.18
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.17
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	97.17
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.16
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	97.15
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	97.15
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	97.15
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.15
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.14
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	97.14
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.13
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.1
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.09
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.08
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.08
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	97.07
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.07
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.06
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.05
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.04
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.03
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.03
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	97.02
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.01
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	97.0
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.0
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.99
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.98
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.98
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.97
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.97
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.96
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.94
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	96.94
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.93
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.92
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.91
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.89
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.89
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.88
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.87
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.87
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.87
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.87
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.86
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.86
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.85
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.85
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.85
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.85
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.84
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.83
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	96.83
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.81
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.79
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.78
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	96.77
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.76
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	96.74
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	96.73
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.73
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.72
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.72
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.71
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.7
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	96.7
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.69
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.69
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.67
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.65
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.65
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.64
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	96.64
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.63
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.63
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.63
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.62
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.62
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	96.6
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.59
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.59
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.59
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.58
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.58
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	96.57
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.57
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.56
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.56
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.55
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.54
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.53
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.52
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	96.5
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.5
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	96.5
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.49
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.49
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.49
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.49
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.49
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.47
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.47
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.46
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	96.44
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.44
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.42
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.41
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.41
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.38
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	96.38
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.38
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.37
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.37
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.33
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.32
2g0t_A	350	Conserved hypothetical protein; structural genomic	96.31
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.31
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.3
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.29
2h1q_A	270	Hypothetical protein; ZP_00559375.1, structural ge	96.27
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.27
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	96.27
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.25
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	96.25
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.24
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.24

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=100.00  E-value=5.3e-53  Score=356.68  Aligned_cols=222  Identities=27%  Similarity=0.449  Sum_probs=211.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL   81 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~   81 (226)
                      ||||||+|.||.+||+||+++||+|++|||++++++.+.+.|++.+.|+.|+++++|+||+|+|+++++++++++++++.
T Consensus         5 kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~   84 (300)
T 3obb_A            5 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLL   84 (300)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSST
T ss_pred             EEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC---------------------
Q 027255           82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK---------------------  140 (226)
Q Consensus        82 ~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~---------------------  140 (226)
                      +.+++|++|||+||++|.++++++++++++|+.|+|+||+|++.+|++|++++|+||++                     
T Consensus        85 ~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~G  164 (300)
T 3obb_A           85 AHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG  164 (300)
T ss_dssp             TSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999998                     


Q ss_pred             --------------------------------------------CCCCCcchhhccccc-------ccccCcccCCccch
Q 027255          141 --------------------------------------------DLGGIANPMFKGKGP-------TMLQSNYAPAFPLK  169 (226)
Q Consensus       141 --------------------------------------------~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~  169 (226)
                                                                  ..++..+++++.+.|       .+..++|.++|+++
T Consensus       165 ~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~  244 (300)
T 3obb_A          165 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ  244 (300)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHH
Confidence                                                        356677888777665       46788999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          170 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       170 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      ++.||++++++++++.|+|+|+++.++++|+.+.++|+|++|+++++++|++..
T Consensus       245 l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~~  298 (300)
T 3obb_A          245 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQ  298 (300)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999998764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=100.00  E-value=3.2e-50  Score=339.54  Aligned_cols=220  Identities=28%  Similarity=0.407  Sum_probs=202.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL   81 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~   81 (226)
                      ||||||+|.||.+||++|+++||+|++|||++++.+++.+.|+..+.|+.|+++++|+||+|+|++.++++++.+  .+.
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~--~~~   84 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSM--ELV   84 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCH--HHH
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHH--HHH
Confidence            799999999999999999999999999999999999999999999999999999999999999999999988753  377


Q ss_pred             cccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC---------------------
Q 027255           82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK---------------------  140 (226)
Q Consensus        82 ~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~---------------------  140 (226)
                      +.+.++++|||+||++|.+++++++.+.++|+.|+|+||+|++..++.|++++|+||++                     
T Consensus        85 ~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~~~g  164 (297)
T 4gbj_A           85 EKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFG  164 (297)
T ss_dssp             HHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEEECC
T ss_pred             hhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeEEec
Confidence            88899999999999999999999999999999999999999999999999999999997                     


Q ss_pred             ---------------------------------------------CCCCCcchhhcccccccccCcccC-CccchHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAP-AFPLKHQQKD  174 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd  174 (226)
                                                                   ..+...||+++.+.+++..++|.| +|+++++.||
T Consensus       165 ~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~KD  244 (297)
T 4gbj_A          165 DDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKD  244 (297)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHHH
Confidence                                                         356778999999999999999986 8999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          175 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       175 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      +++++++|++.|+|+|+++.++++|+.+.++|+|++||+++++++++..
T Consensus       245 l~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~a  293 (297)
T 4gbj_A          245 INLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDDA  293 (297)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHHT
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999998764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-43  Score=300.76  Aligned_cols=222  Identities=82%  Similarity=1.236  Sum_probs=210.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..+.+++++++++|+||+|+|++.++++++++++++
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l  101 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGV  101 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999988999999988889


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++|||+||+.|...+++.+.+.++|+.|+|+|++|++..+..|++++++||++                    
T Consensus       102 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~~~~  181 (310)
T 3doj_A          102 LEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYL  181 (310)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCEEEe
Confidence            899999999999999999999999999999999999999999999999999999999987                    


Q ss_pred             ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  175 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  175 (226)
                                                                   ..+...+++++.+.+++++++|.++|+++++.||+
T Consensus       182 g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl  261 (310)
T 3doj_A          182 GQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM  261 (310)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHHHHH
Confidence                                                         23456678888888899999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255          176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  222 (226)
Q Consensus       176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  222 (226)
                      ++++++++++|+++|+++++.++|+.+.+.|+|++|++++++++++.
T Consensus       262 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  308 (310)
T 3doj_A          262 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFS  308 (310)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999863

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=100.00  E-value=8.3e-43  Score=297.17  Aligned_cols=222  Identities=30%  Similarity=0.476  Sum_probs=210.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..+.+++++++++|+||+|+|++..++.+++++ ++
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~-~~  110 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ-GV  110 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT-CH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch-hH
Confidence            68999999999999999999999999999999999999999999999999999999999999999988999999654 78


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.+.++++|||+||+.|...+++.+.+.++|+.|+|+|++|++..+..|++++|+||++                    
T Consensus       111 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~~~~~~~g  190 (320)
T 4dll_A          111 AAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRATHVG  190 (320)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             HhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhcCCEEEeC
Confidence            888999999999999999999999999999999999999999999999999999999987                    


Q ss_pred             --------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHHH
Q 027255          141 --------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR  176 (226)
Q Consensus       141 --------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  176 (226)
                                                                  ..+...+|+++.+.+++++++|.++|+++++.||++
T Consensus       191 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~KDl~  270 (320)
T 4dll_A          191 PHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMR  270 (320)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHHHHHH
Confidence                                                        345678888999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          177 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       177 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      ++++++++.|+++|+++++.++|+.+.+.|+|++|++++++++++..
T Consensus       271 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  317 (320)
T 4dll_A          271 NALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRN  317 (320)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC-
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=100.00  E-value=5.9e-43  Score=293.67  Aligned_cols=221  Identities=56%  Similarity=0.907  Sum_probs=209.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..+.+++++++++|+||+|+|++.++++++++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            79999999999999999999999999999999999999999999999999999999999999999988999999888888


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++|||+||+.|.+.+++.+.+.++|+.|+|+|++|++..+..|++++++||++                    
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~  161 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHL  161 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEEe
Confidence            889999999999999999999999999999999999999999999999999999999987                    


Q ss_pred             ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  175 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  175 (226)
                                                                   ..+...+|+++.+.+++..++|.++|.++++.||+
T Consensus       162 g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  241 (287)
T 3pef_A          162 GDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDL  241 (287)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHH
Confidence                                                         23456778888888999999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 027255          176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD  221 (226)
Q Consensus       176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~  221 (226)
                      ++++++++++|+++|+++.++++|+.+.++|+|++|++++++++++
T Consensus       242 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~  287 (287)
T 3pef_A          242 RLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER  287 (287)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGCC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999988753

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=100.00  E-value=8.9e-43  Score=292.57  Aligned_cols=220  Identities=59%  Similarity=0.951  Sum_probs=208.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..+.+++++++++|+||+|+|++.++++++++++++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999988999999888888


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++|||+||+.|...+++.+.+.++|++|+|+|++|++..+..|++++++||++                    
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~  161 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHL  161 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEc
Confidence            898999999999999999999999999999999999999999999999999999999987                    


Q ss_pred             ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  175 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  175 (226)
                                                                   ..+...+++++.+.+++..++|.++|+++++.||+
T Consensus       162 g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  241 (287)
T 3pdu_A          162 GEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDL  241 (287)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHH
Confidence                                                         23456677788888899999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 027255          176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  220 (226)
Q Consensus       176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~  220 (226)
                      ++++++++++|+++|+.++++++|+.+.+.|+|++|+++++++++
T Consensus       242 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~  286 (287)
T 3pdu_A          242 RLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE  286 (287)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999886

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=1.2e-42  Score=293.94  Aligned_cols=223  Identities=25%  Similarity=0.391  Sum_probs=206.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |||+|||+|.||.+||++|+++||+|++|||++++.+.+.+.|+.. +.+++++++++|+||+|+|++..++.+++++++
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~   87 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDG   87 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhh
Confidence            6899999999999999999999999999999999999999999888 899999999999999999998899999988888


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-------------------
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-------------------  140 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-------------------  140 (226)
                      +.+.++++++|||+||+.|...+++.+.+.++|+.|+|+|++|++..+..|++++++||++                   
T Consensus        88 l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~  167 (303)
T 3g0o_A           88 VAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYR  167 (303)
T ss_dssp             CGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCCEEE
Confidence            8899999999999999999999999999999999999999999999999999999999987                   


Q ss_pred             -----------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHH
Q 027255          141 -----------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQK  173 (226)
Q Consensus       141 -----------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k  173 (226)
                                                                     ..+...+++++.+.++++.++|.++|.++++.|
T Consensus       168 ~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k  247 (303)
T 3g0o_A          168 ISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVK  247 (303)
T ss_dssp             EESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHHHH
Confidence                                                           345566777888888899999999999999999


Q ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          174 DMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       174 d~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      |+++++++++++|+++|+.++++++|+.+.+.|+|++|+++++++++++.
T Consensus       248 D~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  297 (303)
T 3g0o_A          248 DLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGEG  297 (303)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC----
T ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999998764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=100.00  E-value=8e-41  Score=283.28  Aligned_cols=221  Identities=20%  Similarity=0.333  Sum_probs=196.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||.+||++|.++||+|++|||++++.+++.+.|+..+.++.++++++|+||+|+|++.++++++. ++++
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~-~~~l   88 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG-MPGV   88 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT-STTH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc-ccch
Confidence            589999999999999999999999999999999999999999999999999999999999999999888999983 2255


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-----------C-------C
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-----------D-------L  142 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-----------~-------~  142 (226)
                       ..+.++++|||+||+.|...+++.+.+.++|+.|+|+||+|+++.+..+.+++|+||++           .       .
T Consensus        89 -~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~~~~  167 (306)
T 3l6d_A           89 -ARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFL  167 (306)
T ss_dssp             -HHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEEEEC
T ss_pred             -hhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCEEEe
Confidence             34579999999999999999999999999999999999999998888888899999987           0       1


Q ss_pred             ----------------------------------------------CC--CcchhhcccccccccCcccCC-ccchHHHH
Q 027255          143 ----------------------------------------------GG--IANPMFKGKGPTMLQSNYAPA-FPLKHQQK  173 (226)
Q Consensus       143 ----------------------------------------------~~--~~s~~~~~~~~~~~~~~~~~~-~~~~~~~k  173 (226)
                                                                    +.  +.+++++.+.|++++++|.++ |+++++.|
T Consensus       168 ~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~K  247 (306)
T 3l6d_A          168 PWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHAD  247 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBHHHHHH
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcccHHHHHH
Confidence                                                          11  234455556677889999885 69999999


Q ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          174 DMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       174 d~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      |++++++++++.|+++|+++++.++|+.+.+.|+|++|+++++++++++.
T Consensus       248 Dl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~~  297 (306)
T 3l6d_A          248 AFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQ  297 (306)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC---
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999988654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=100.00  E-value=1.1e-37  Score=262.91  Aligned_cols=203  Identities=26%  Similarity=0.364  Sum_probs=184.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..+.+++++++ +|+||+|+|++.++++++   +++
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~---~~l   91 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV---GEL   91 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH---HHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH---HHH
Confidence            4899999999999999999999999999999999999999999999999999999 999999999988999998   788


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++|||+||+.|...+++.+.+.++|+.|+|+|++|++..+..|++++++||++                    
T Consensus        92 ~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~  171 (296)
T 3qha_A           92 AGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHA  171 (296)
T ss_dssp             HTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             HHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeEEc
Confidence            888999999999999999999999999999999999999999999999999999999987                    


Q ss_pred             ---------------------------------------------------CCCCCcchhhcccccccccCcccCCccc-
Q 027255          141 ---------------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPL-  168 (226)
Q Consensus       141 ---------------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~-  168 (226)
                                                                         ..+.+.|+..+  .++++++ |.++|.+ 
T Consensus       172 g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~-~~~~f~~~  248 (296)
T 3qha_A          172 GEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--NMKDLEP-DNFLYQPF  248 (296)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--SCSCCCT-TSTTHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--chhhhhc-CCCCCchh
Confidence                                                               11223333322  6778888 8999999 


Q ss_pred             ----hHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCC
Q 027255          169 ----KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDN  210 (226)
Q Consensus       169 ----~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~  210 (226)
                          +++.||+++++++|+++|+++|+++.++++|+.+.+.|++++
T Consensus       249 ~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~  294 (296)
T 3qha_A          249 LHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK  294 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred             hhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence                999999999999999999999999999999999999999654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=100.00  E-value=5.7e-36  Score=252.03  Aligned_cols=223  Identities=32%  Similarity=0.555  Sum_probs=200.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||..++.+|.++|++|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.+++.++++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            68999999999999999999999999999999999999998899888999999999999999999888899998765567


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++||++++..|...+++.+.+.++|+.|+++|++++++.+..+++.+++||++                    
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~  165 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  165 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence            788889999999999999989999999988899999999999999988999999999875                    


Q ss_pred             ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  175 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  175 (226)
                                                                   ..+...++.+....+.++.++|.++|.++.+.||+
T Consensus       166 ~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~  245 (299)
T 1vpd_A          166 GDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL  245 (299)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHH
Confidence                                                         12223334444456678888898999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      +.++++++++|+++|+.+.++++|+.+.+.|+|++||+++++++++..
T Consensus       246 ~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~  293 (299)
T 1vpd_A          246 ANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLA  293 (299)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998653

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=100.00  E-value=1.9e-35  Score=248.56  Aligned_cols=223  Identities=27%  Similarity=0.467  Sum_probs=193.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||..||++|.++|++|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|.+.+++.++....++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            89999999999999999999999999999999999999998899888999999999999999999988999988543345


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++||+++++.+...+++.+.+.+++..|+++|+++++..+..+++.+++|+++                    
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~  160 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYC  160 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEEE
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence            567788999999999999999999888888899999999999998889999999999886                    


Q ss_pred             ---------------------------------------------CCCCCcchhhcccc--c-----ccccCcccCCccc
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKG--P-----TMLQSNYAPAFPL  168 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~--~-----~~~~~~~~~~~~~  168 (226)
                                                                   ..+...++++....  +     .+..++|.++|.+
T Consensus       161 ~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~  240 (296)
T 2gf2_A          161 GAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT  240 (296)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCch
Confidence                                                         11122223322211  1     2345788889999


Q ss_pred             hHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          169 KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       169 ~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      +.+.||+++++++++++|+++|+.+.++++|+.+.+.|+|++|++++++++++.+
T Consensus       241 ~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~  295 (296)
T 2gf2_A          241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE  295 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999997653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=100.00  E-value=3.1e-35  Score=247.77  Aligned_cols=222  Identities=31%  Similarity=0.536  Sum_probs=199.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||..++.+|.+.||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|.+.+++.++.+++++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            68999999999999999999999999999999999999988898888899999999999999999988899998654467


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++||++++..|...+++.+.+.++++.|+++|+++++..+..|+++++++|++                    
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  164 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHV  164 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEe
Confidence            788889999999999999999999999988899999999999998888899889999875                    


Q ss_pred             ---------------------------------------------CCCCCcchhhccccc-ccccCcccCCccchHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD  174 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd  174 (226)
                                                                   ..+...++.+....+ .++.++|.++|.++.+.||
T Consensus       165 ~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~kd  244 (301)
T 3cky_A          165 GDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKD  244 (301)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHHH
Confidence                                                         112233444444567 7889999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255          175 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  222 (226)
Q Consensus       175 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  222 (226)
                      ++.++++++++|+++|+.++++++|+.+.+.|+|++||+++++++++.
T Consensus       245 ~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~  292 (301)
T 3cky_A          245 LGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQM  292 (301)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999865

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=100.00  E-value=6.4e-35  Score=245.04  Aligned_cols=222  Identities=29%  Similarity=0.475  Sum_probs=197.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||+.+|++|.+.||+|++|| ++++.+.+.+.|+..+.++.++++++|+||+|+|.+.+++.++.+++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            699999999999999999999999999999 9999999988898888999999999999999999988899998544477


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++||++++..|...+++.+.+.+++++|+++|+++++..+..|.+++++||++                    
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~  162 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLV  162 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEe
Confidence            788889999999999999999999999988899999999999998888899889999875                    


Q ss_pred             ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  175 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  175 (226)
                                                                   ..+...++.+....+.++.++|.++|+++.+.||+
T Consensus       163 ~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~  242 (295)
T 1yb4_A          163 GGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDL  242 (295)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHH
Confidence                                                         11222333333344567778899999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      +++++++++.|+++|+.++++++|+.+.+.|+|++|++++++++++..
T Consensus       243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~  290 (295)
T 1yb4_A          243 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELMA  290 (295)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=244.50  Aligned_cols=220  Identities=50%  Similarity=0.824  Sum_probs=193.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|+|||+|.||..+|.+|.+.|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.++++++....++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            57999999999999999999999999999999999999988898888899999999999999999888999988543345


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.+.++++||++|++.+...+++.+.+.++++.|+++|+++++..+..|.+.++++|++                    
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  190 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL  190 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEEEe
Confidence            577889999999999999999999999988899999999999999999999989989875                    


Q ss_pred             ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255          141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  175 (226)
Q Consensus       141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  175 (226)
                                                                   ..+...++.+....+.++.++|.++|+++.+.||+
T Consensus       191 ~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~  270 (316)
T 2uyy_A          191 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDL  270 (316)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHHH
Confidence                                                         01112223333334567778899999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 027255          176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  220 (226)
Q Consensus       176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~  220 (226)
                      +++++++++.|+++|+.++++++|+.+.+.|+|++||++++++++
T Consensus       271 ~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~  315 (316)
T 2uyy_A          271 RLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI  315 (316)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence            999999999999999999999999999999999999999998764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=100.00  E-value=3.5e-34  Score=239.75  Aligned_cols=218  Identities=23%  Similarity=0.373  Sum_probs=193.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||..+|++|.+ |++|++|||++++.+.+.+.|+..+. +.++++++|+||+|+|++.++++++   +++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~---~~l   76 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA---EAL   76 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH---HHH
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH---HHH
Confidence            589999999999999999999 99999999999999998887877766 7888889999999999987788888   677


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------  140 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------  140 (226)
                      .+.++++++||++|+..+...+++.+.+.++|+.|+++|+++++..+..|.+++++||++                    
T Consensus        77 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~  156 (289)
T 2cvz_A           77 YPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHVG  156 (289)
T ss_dssp             TTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCTTEEEEEEEE
T ss_pred             HhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHHhhcCCeEEcC
Confidence            778889999999999999999999999988899999999999998888999888888865                    


Q ss_pred             --------------------------------------------CCCCCcchhhccccc-ccccCcccCCccchHHHHHH
Q 027255          141 --------------------------------------------DLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKDM  175 (226)
Q Consensus       141 --------------------------------------------~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd~  175 (226)
                                                                  ..+...+++++...+ .++.++|.++|+++.+.||+
T Consensus       157 ~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd~  236 (289)
T 2cvz_A          157 PVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDL  236 (289)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHHH
Confidence                                                        122233344444556 68888999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255          176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  223 (226)
Q Consensus       176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  223 (226)
                      +.++++++++|+++|+.++++++|+.+.+.|+|++||+++++.+++..
T Consensus       237 ~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~~~  284 (289)
T 2cvz_A          237 GIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWG  284 (289)
T ss_dssp             HHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=100.00  E-value=7.6e-35  Score=247.70  Aligned_cols=212  Identities=17%  Similarity=0.271  Sum_probs=179.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCc-------hhHHHHHHCCCcccC-CHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTL-------SKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~-------~~~~~l~~~g~~~~~-s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      |||+|||+|.||.+||++|+++| |+|++|||++       +..+.+.+.|+  +. ++.++++++|+||+|+|++...+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~~  102 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATKA  102 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHHH
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHHH
Confidence            58999999999999999999999 9999999998       56667777787  66 89999999999999999966554


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCC----------
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKD----------  141 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~----------  141 (226)
                       ++   .++.+.++++++|||+||+.|.+.+++.+.+.++|+.|+|+||+|+ ..+..+++++++||+..          
T Consensus       103 -~~---~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~~~~~~ll~~~  177 (317)
T 4ezb_A          103 -VA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR-VPPYAEKVPILVAGRRAVEVAERLNAL  177 (317)
T ss_dssp             -HH---HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC-STTTGGGSEEEEESTTHHHHHHHHHTT
T ss_pred             -HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC-chhhcCCEEEEEeCChHHHHHHHHHHh
Confidence             44   5678888999999999999999999999999999999999999996 45678899999999860          


Q ss_pred             ----------CC-------------------------------C-----------CcchhhcccccccccCcccCCccch
Q 027255          142 ----------LG-------------------------------G-----------IANPMFKGKGPTMLQSNYAPAFPLK  169 (226)
Q Consensus       142 ----------~~-------------------------------~-----------~~s~~~~~~~~~~~~~~~~~~~~~~  169 (226)
                                .+                               .           ..++.+..+.+++++++|.++|+  
T Consensus       178 g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~--  255 (317)
T 4ezb_A          178 GMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGLDWRDVADYYLSRTFEHGAR--  255 (317)
T ss_dssp             TCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHH--
T ss_pred             CCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCccccHHHhhhhhhcCCCCCCcc--
Confidence                      00                               0           00011123455677788888887  


Q ss_pred             HHHHHHHHHHHHHhhcCCCchHHHHHHHH----HHHHHHcCCC-CCChHHHHHHHHhh
Q 027255          170 HQQKDMRLALALGDENAVSMPIAAAANEA----FKKARSLGLG-DNDFSAVFEVVKDL  222 (226)
Q Consensus       170 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~----~~~a~~~g~g-~~d~~~~~~~~~~~  222 (226)
                       +.||++++.++++++|+++|+++++.++    |+.+.+.|++ ++||+++++.+.+.
T Consensus       256 -~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~  312 (317)
T 4ezb_A          256 -RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARR  312 (317)
T ss_dssp             -HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhh
Confidence             4899999999999999999999999999    7887888997 99999999998754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=100.00  E-value=5.7e-34  Score=241.81  Aligned_cols=201  Identities=17%  Similarity=0.273  Sum_probs=175.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCC--chhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT--LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~--~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      |||+|||+|.||.+||++|+++|| +|++|||+  +++.+.+.+.|+..+.++.++++++|+||+|+|++... +++   
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~-~~~---  100 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAAL-EVA---  100 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHH-HHH---
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHH-HHH---
Confidence            689999999999999999999999 99999997  58888888899999999999999999999999996655 455   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--CCcEEecCCCCChHhhccCcEEEEeccCC---------------
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLEAPVSGSKQPAETGQLVILSAGEK---------------  140 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~~ld~pv~g~~~~a~~g~~~~~~gg~~---------------  140 (226)
                      .++.+.++++++|||+||+.|.+.+++.+.+.++  |++|+|+|++|++..+ .+++++|+||+.               
T Consensus       101 ~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~~~~~~ll~~~g~~~  179 (312)
T 3qsg_A          101 QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGARRFQAAFTLYGCRI  179 (312)
T ss_dssp             HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTHHHHHHHHHTTTCEE
T ss_pred             HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChHHHHHHHHHHhCCCe
Confidence            6788889999999999999999999999999998  9999999999977654 789999999987               


Q ss_pred             ------------------------------------CCC-----------CCcchhhcccccccccCcccCCccchHHHH
Q 027255          141 ------------------------------------DLG-----------GIANPMFKGKGPTMLQSNYAPAFPLKHQQK  173 (226)
Q Consensus       141 ------------------------------------~~~-----------~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k  173 (226)
                                                          ..|           ...++.++.+.+++++++|.++|++   .|
T Consensus       180 ~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~---~K  256 (312)
T 3qsg_A          180 EVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLASLDASFPEHHLRDLALYLVERNLEHADRR---AH  256 (312)
T ss_dssp             EECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHSGGGTHHHHHHHHHHHHHHHHHHH---HH
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCchhHHHhhhHhhcCCCCcccch---HH
Confidence                                                000           0012334445667788888888875   79


Q ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCC
Q 027255          174 DMRLALALGDENAVSMPIAAAANEAFKKARSLGLGD  209 (226)
Q Consensus       174 d~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~  209 (226)
                      |++++++++++.|+++|+++++.++|+.+.+.|+++
T Consensus       257 Dl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~  292 (312)
T 3qsg_A          257 ELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL  292 (312)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999998876

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.96  E-value=3.5e-29  Score=222.69  Aligned_cols=198  Identities=20%  Similarity=0.285  Sum_probs=165.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC-----CcccCCHHHHhhh---CCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-----ATVGGSPAEVIKK---CTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-----~~~~~s~~~~~~~---advvi~~~p~~~~~~~   72 (226)
                      |+|||||+|.||.+||++|+++||+|++|||++++++.+.+.+     +..+.+++++++.   +|+||+|+|.+..+++
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   84 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDD   84 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHH
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHHH
Confidence            5899999999999999999999999999999999999998763     2346899999874   9999999999888999


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC------------
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK------------  140 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------  140 (226)
                      ++   +++.+.+++|++|||+||+.|..++++.+.+.++|++|+|+||+|++.+++.|. .+|+||++            
T Consensus        85 vl---~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pll~~  160 (484)
T 4gwg_A           85 FI---EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIFQG  160 (484)
T ss_dssp             HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHH
T ss_pred             HH---HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHHHHH
Confidence            98   788899999999999999999999999999999999999999999999999999 89999987            


Q ss_pred             ----------------------------------------------------------------CCCCCcchhhcccccc
Q 027255          141 ----------------------------------------------------------------DLGGIANPMFKGKGPT  156 (226)
Q Consensus       141 ----------------------------------------------------------------~~~~~~s~~~~~~~~~  156 (226)
                                                                                      +.|...|++++...+.
T Consensus       161 ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~~~  240 (484)
T 4gwg_A          161 IAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANI  240 (484)
T ss_dssp             HSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred             hcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHHHH
Confidence                                                                            2344566666666666


Q ss_pred             cccCcccCCccchHHH-----HHH-HHHHHHHhhcCCCch-HHHHHHHHHHHH
Q 027255          157 MLQSNYAPAFPLKHQQ-----KDM-RLALALGDENAVSMP-IAAAANEAFKKA  202 (226)
Q Consensus       157 ~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p-~~~~~~~~~~~a  202 (226)
                      +..+|+.+++.++...     |+. +...+.|.++|+|+| +++++...|..+
T Consensus       241 l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~  293 (484)
T 4gwg_A          241 LKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS  293 (484)
T ss_dssp             HHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Confidence            6667776555555543     333 344567889999999 566676666554

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.96  E-value=1.8e-28  Score=211.25  Aligned_cols=149  Identities=20%  Similarity=0.315  Sum_probs=136.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhC---CeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC---TITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~a---dvvi~~~p~~~~~~~v~~~~   77 (226)
                      |||+|||+|.||.+||++|+++||+|++|||++++++.+.+.|+..+.+++++++++   |+||+|+|++ .+++++   
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl---   98 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML---   98 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH---
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH---
Confidence            689999999999999999999999999999999999999999999999999999999   9999999997 899998   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhcccc
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKG  154 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~  154 (226)
                      .++.+.++++++|||+||+.|...+++.+.+.++|+.|+|+||+|++..+..|+ ++|+||++..-....++++..+
T Consensus        99 ~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg  174 (358)
T 4e21_A           99 QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLA  174 (358)
T ss_dssp             HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHS
T ss_pred             HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhc
Confidence            788889999999999999999999999999999999999999999999999998 8999998743333445555444

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-28  Score=219.98  Aligned_cols=191  Identities=19%  Similarity=0.254  Sum_probs=164.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----CCCcccCCHHHHhhh---CCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGATVGGSPAEVIKK---CTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----~g~~~~~s~~~~~~~---advvi~~~p~~~~~~~   72 (226)
                      .+|||||+|.||++||++|+++||+|++|||++++++.+.+     .|+..+.++++++++   +|+||+|+|++..+++
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   90 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA   90 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence            37999999999999999999999999999999999999988     578888999999987   9999999999888999


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC------------
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK------------  140 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------  140 (226)
                      ++   +++.+.+++|++|||+|++.|..++++.+.+.++|+.|+++||+|++..+..|+ ++|+||++            
T Consensus        91 vl---~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll~~  166 (497)
T 2p4q_A           91 LI---NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQS  166 (497)
T ss_dssp             HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHH
T ss_pred             HH---HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHHHH
Confidence            99   788889999999999999999999999999998999999999999999999999 79999876            


Q ss_pred             ---C------------------------------------------------------------CCCCcchhhccccccc
Q 027255          141 ---D------------------------------------------------------------LGGIANPMFKGKGPTM  157 (226)
Q Consensus       141 ---~------------------------------------------------------------~~~~~s~~~~~~~~~~  157 (226)
                         .                                                            .+...|++++...+.+
T Consensus       167 ~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l  246 (497)
T 2p4q_A          167 ISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDIL  246 (497)
T ss_dssp             HSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHH
T ss_pred             hcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHH
Confidence               1                                                            0112222333333445


Q ss_pred             ccCcccCCccchHHH-----HHHH-HHHHHHhhcCCCchHHHHH
Q 027255          158 LQSNYAPAFPLKHQQ-----KDMR-LALALGDENAVSMPIAAAA  195 (226)
Q Consensus       158 ~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~  195 (226)
                      ..++|.++|.++.+.     ||+. .+.+.++++|+++|++..+
T Consensus       247 ~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~a  290 (497)
T 2p4q_A          247 KFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEA  290 (497)
T ss_dssp             TCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             hcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHH
Confidence            677886668888887     8875 7899999999999999885

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.95  E-value=8.2e-28  Score=214.58  Aligned_cols=136  Identities=22%  Similarity=0.396  Sum_probs=126.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCcccCCHHHHhhh---CCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEVIKK---CTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v   73 (226)
                      |+|+|||+|.||++||++|+++||+|++|||++++++.+.+.    |+..+.++++++++   +|+||+|+|.+..++++
T Consensus        16 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~v   95 (480)
T 2zyd_A           16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAA   95 (480)
T ss_dssp             BSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHH
T ss_pred             CeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHH
Confidence            579999999999999999999999999999999999998875    78888999999987   99999999997789999


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                      +   +++.+.++++++|||++++.+..++++.+.+.++|+.|+++|++|++..+..|. ++|+||++
T Consensus        96 l---~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~  158 (480)
T 2zyd_A           96 I---DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQK  158 (480)
T ss_dssp             H---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEESCH
T ss_pred             H---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-eEEecCCH
Confidence            9   788888989999999999999999999999998999999999999999999999 79999876

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.94  E-value=1.1e-26  Score=207.63  Aligned_cols=198  Identities=19%  Similarity=0.268  Sum_probs=162.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----CCCcccCCHHHHhh---hCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGATVGGSPAEVIK---KCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----~g~~~~~s~~~~~~---~advvi~~~p~~~~~~~   72 (226)
                      |+|+|||+|.||+.||.+|+++||+|.+|||++++++.+.+     .|+..+.+++++++   ++|+||+|+|++.++++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            68999999999999999999999999999999999999987     67888889999885   89999999999878999


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC------------
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK------------  140 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------  140 (226)
                      ++   +++.+.++++++|||++++.+....++.+.+.+.|+.|+++|++|++..+..|+ ++|+||++            
T Consensus        83 vl---~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll~~  158 (482)
T 2pgd_A           83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQG  158 (482)
T ss_dssp             HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHH
T ss_pred             HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHHHH
Confidence            98   778888889999999999999988889999988899999999999999999999 67999876            


Q ss_pred             ---CC-------------------------------------------------------------CCCcchhhcccccc
Q 027255          141 ---DL-------------------------------------------------------------GGIANPMFKGKGPT  156 (226)
Q Consensus       141 ---~~-------------------------------------------------------------~~~~s~~~~~~~~~  156 (226)
                         ..                                                             +...|++.+...+.
T Consensus       159 ~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~~  238 (482)
T 2pgd_A          159 IAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI  238 (482)
T ss_dssp             HSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred             hhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence               00                                                             00111111111122


Q ss_pred             cccCcccCCccchHH------HHHHHHHHHHHhhcCCCchHHH-HHHHHHHHH
Q 027255          157 MLQSNYAPAFPLKHQ------QKDMRLALALGDENAVSMPIAA-AANEAFKKA  202 (226)
Q Consensus       157 ~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~-~~~~~~~~a  202 (226)
                      +..++|.++|.++.+      .++.+.+.++|+++|+|+|++. ++++.+...
T Consensus       239 l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~  291 (482)
T 2pgd_A          239 LKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS  291 (482)
T ss_dssp             HHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhh
Confidence            345666666766665      4677889999999999999995 677766443

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.94  E-value=1e-26  Score=192.23  Aligned_cols=195  Identities=18%  Similarity=0.260  Sum_probs=152.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcC--CchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR--TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr--~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||+|||+|.||.+||++|.++||+|++|||  ++++.+.+.+.|+.  .++.++++++|+||+|+|++...+.+    .
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~----~   74 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA----R   74 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH----H
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH----H
Confidence            8999999999999999999999999999999  77888888877877  77889999999999999987666654    3


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCC---------------CC
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKD---------------LG  143 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~---------------~~  143 (226)
                      ++.+.+++  +||+++++.|...+++.+.+.+.|  |+++|+++++..+..|.+ ++++|+..               .+
T Consensus        75 ~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~-~~~~g~~~~~~~~l~~~g~~~~~~~  149 (264)
T 1i36_A           75 RAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIR-IIASGRDAEEFMKLNRYGLNIEVRG  149 (264)
T ss_dssp             HHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCE-EEEESTTHHHHHGGGGGTCEEEECS
T ss_pred             HHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCe-EEecCCcHHHhhhHHHcCCeeEECC
Confidence            45566654  999999999999999999888777  999999999998888988 88888740               00


Q ss_pred             C--C---------------------------------------------cchhhcccccccccCcccCCccchHHHHHHH
Q 027255          144 G--I---------------------------------------------ANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR  176 (226)
Q Consensus       144 ~--~---------------------------------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  176 (226)
                      .  .                                             .++.  ...+.+.+++|.++|+   ..||++
T Consensus       150 ~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~---~~~~~~  224 (264)
T 1i36_A          150 REPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVLEMLEYTEGNDFR--ESAISRLKSSCIHARR---RYEEMK  224 (264)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSCSSTH--HHHHHHHHHHHHTHHH---HHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhcCccHH--HHHHHHhcCCCCcchh---hHHHHH
Confidence            0  0                                             0000  0112334455556655   579999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCCh
Q 027255          177 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDF  212 (226)
Q Consensus       177 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~  212 (226)
                      ++.++++++ +++|+.++++++|+.+.+.|++.+|-
T Consensus       225 ~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~~  259 (264)
T 1i36_A          225 EVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADAR  259 (264)
T ss_dssp             HHHHHHHTT-SCCSHHHHHHHHHHHHCC------GG
T ss_pred             HHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhhH
Confidence            999999999 99999999999999999988876653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.94  E-value=1.6e-26  Score=204.16  Aligned_cols=197  Identities=15%  Similarity=0.154  Sum_probs=153.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhhCCeEE
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~~~~~~advvi   61 (226)
                      +|+|||+|.||.+||.+|+++||+|++|||++++++.+.+.                    ++++++++++++++||+||
T Consensus        10 ~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvvi   89 (446)
T 4a7p_A           10 RIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAVF   89 (446)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEEE
Confidence            79999999999999999999999999999999999998763                    2466789999999999999


Q ss_pred             EecCCHH----------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCc
Q 027255           62 GMLADPA----------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQ  131 (226)
Q Consensus        62 ~~~p~~~----------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~  131 (226)
                      +|+|++.          .+++++   +++.+.++++++||++||+.|.+++++.+.+.+.+.. .|.++.++|..+++|+
T Consensus        90 i~Vptp~~~~~~~~Dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~eG~  165 (446)
T 4a7p_A           90 IAVGTPSRRGDGHADLSYVFAAA---REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLREGA  165 (446)
T ss_dssp             ECCCCCBCTTTCCBCTHHHHHHH---HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCCTTS
T ss_pred             EEcCCCCccccCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCcccccccc
Confidence            9998874          688888   7888899999999999999999999999999887543 4555555556666665


Q ss_pred             E--------EEEeccCC------------CCCCCc-chh-----------------------------------------
Q 027255          132 L--------VILSAGEK------------DLGGIA-NPM-----------------------------------------  149 (226)
Q Consensus       132 ~--------~~~~gg~~------------~~~~~~-s~~-----------------------------------------  149 (226)
                      +        .+++|++.            ...... .++                                         
T Consensus       166 a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~  245 (446)
T 4a7p_A          166 AIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQ  245 (446)
T ss_dssp             HHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             hhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            4        58888863            111000 000                                         


Q ss_pred             --hc--ccccccccCcccC--CccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 027255          150 --FK--GKGPTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  202 (226)
Q Consensus       150 --~~--~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  202 (226)
                        .+  ...+++....+.|  +|...++.||+.++.+.|+++|+++|+++++.++.+.-
T Consensus       246 ~v~~~~~~~~rig~~~l~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~  304 (446)
T 4a7p_A          246 EVSRGIGMDNRIGGKFLHAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDAR  304 (446)
T ss_dssp             HHHHHHHTSTTC---CCCCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCccCCCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence              00  0113333334444  67899999999999999999999999999998887653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.93  E-value=2e-26  Score=204.08  Aligned_cols=198  Identities=14%  Similarity=0.164  Sum_probs=155.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+|.||.++|.+|+++||+|++|||++++++.+.+.                    ++..+++++++++++|+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            699999999999999999999999999999999999888762                    245678899999999999


Q ss_pred             EEecCCHH---------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc---EEecCCCCChHhhc
Q 027255           61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH---FLEAPVSGSKQPAE  128 (226)
Q Consensus        61 i~~~p~~~---------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~---~ld~pv~g~~~~a~  128 (226)
                      |+|+|++.         .+++++   +++.+.++++++||++||+.|.+.+++.+.+.+.+..   .+|.++..+|..+.
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~  159 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA---RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLK  159 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCC
T ss_pred             EEEcCCCcccCCCcChHHHHHHH---HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhc
Confidence            99999864         788888   7888889999999999999999999999988775322   24555555565566


Q ss_pred             cCcE--------EEEeccCC------------CCCCCcchh---------------------------------------
Q 027255          129 TGQL--------VILSAGEK------------DLGGIANPM---------------------------------------  149 (226)
Q Consensus       129 ~g~~--------~~~~gg~~------------~~~~~~s~~---------------------------------------  149 (226)
                      .|++        .+++||+.            .......++                                       
T Consensus       160 eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid  239 (450)
T 3gg2_A          160 EGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGAD  239 (450)
T ss_dssp             TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6665        47888763            111000000                                       


Q ss_pred             ----hc--ccccccccCcccCC--ccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 027255          150 ----FK--GKGPTMLQSNYAPA--FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK  201 (226)
Q Consensus       150 ----~~--~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  201 (226)
                          .+  ...+++....|.|+  |...++.||+.++.+.|+++|+++|+++++.++.+.
T Consensus       240 ~~~v~~~~~~~~rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~  299 (450)
T 3gg2_A          240 VSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEK  299 (450)
T ss_dssp             HHHHHHHHHTSTTTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence                00  11244555666664  788999999999999999999999999999988764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.93  E-value=5.1e-26  Score=202.90  Aligned_cols=136  Identities=23%  Similarity=0.388  Sum_probs=124.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCcccCCHHHHhhh---CCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEVIKK---CTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v   73 (226)
                      |+|+|||+|.||++||.+|+++||+|.+|||++++.+.+.+.    |+..+.++++++++   +|+||+|+|.+.+++++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            489999999999999999999999999999999999998775    77788899999887   99999999998889999


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                      +   +++.+.+++|++|||+++..+...+++.+.+.+.|+.|+++|++|++..+..|. ++|+||++
T Consensus        86 l---~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~  148 (474)
T 2iz1_A           86 I---KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP-SMMPGGQK  148 (474)
T ss_dssp             H---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC-CEEEEECH
T ss_pred             H---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC-eEEecCCH
Confidence            8   778888989999999999999988899988888899999999999999999888 67888875

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.93  E-value=8.8e-26  Score=201.50  Aligned_cols=136  Identities=24%  Similarity=0.396  Sum_probs=123.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-C-------CcccCCHHHHhhh---CCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-G-------ATVGGSPAEVIKK---CTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g-------~~~~~s~~~~~~~---advvi~~~p~~~~   69 (226)
                      |+|+|||+|.||+.||.+|+++||+|++|||++++.+.+.+. |       +..+.++++++++   +|+||+|+|.+.+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            799999999999999999999999999999999999998765 6       6678899999885   9999999999778


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                      +++++   +++.+.++++++|||++++.+....++.+.+.+.|+.|+++|++|++..+..|. ++|+||++
T Consensus        82 v~~vl---~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~  148 (478)
T 1pgj_A           82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTL  148 (478)
T ss_dssp             HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECH
T ss_pred             HHHHH---HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eEeccCCH
Confidence            99998   778888889999999999999988889999988899999999999999988888 68888876

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.91  E-value=1.8e-24  Score=192.08  Aligned_cols=199  Identities=16%  Similarity=0.074  Sum_probs=149.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CC-eEEEEcCCch----hHHHHHHC---------------------C-CcccCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GF-KVTVWNRTLS----KCDELVAH---------------------G-ATVGGSPAE   52 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~-~V~~~dr~~~----~~~~l~~~---------------------g-~~~~~s~~~   52 (226)
                      |||+|||+|.||.+||.+|+++ || +|++||++++    +++.+.+.                     | +..+++ .+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e   97 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS   97 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence            7999999999999999999999 99 9999999999    88887652                     2 233445 67


Q ss_pred             HhhhCCeEEEecCCHH--------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHH--hcC------CcEE
Q 027255           53 VIKKCTITIGMLADPA--------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAIT--SKG------GHFL  116 (226)
Q Consensus        53 ~~~~advvi~~~p~~~--------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~--~~g------~~~l  116 (226)
                      ++++||+||+|+|++.        .+..+....+++.+.+++|++||++||+.|.+++++.+.+.  +.|      +.++
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~d~~v~  177 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALA  177 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTTTBEEE
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCCceeEE
Confidence            8899999999999863        23333322277888999999999999999999999987543  345      4689


Q ss_pred             ecCCCCChHhhccCcE---EEEeccCC-----------CC----------------------------------------
Q 027255          117 EAPVSGSKQPAETGQL---VILSAGEK-----------DL----------------------------------------  142 (226)
Q Consensus       117 d~pv~g~~~~a~~g~~---~~~~gg~~-----------~~----------------------------------------  142 (226)
                      ++|.+..+..+..+.+   .+++|+++           ..                                        
T Consensus       178 ~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~l~e  257 (478)
T 3g79_A          178 HAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLALYCE  257 (478)
T ss_dssp             ECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988877765544   57888776           00                                        


Q ss_pred             --CCCcchhhcc--ccc--ccccCcccCCc--cchHHHHHHHHHHHHHhhcCCC-------chHHHHHHHHHH
Q 027255          143 --GGIANPMFKG--KGP--TMLQSNYAPAF--PLKHQQKDMRLALALGDENAVS-------MPIAAAANEAFK  200 (226)
Q Consensus       143 --~~~~s~~~~~--~~~--~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~-------~p~~~~~~~~~~  200 (226)
                        |.....+.+.  ..+  ++..+.|.|+|  ...++.||+.++.+.|+++|++       +++++++.++-+
T Consensus       258 ~~GiD~~~v~~~~~~~~~~ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~~iN~  330 (478)
T 3g79_A          258 AMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLARKVND  330 (478)
T ss_dssp             HTTCCHHHHHHHHHTSCCSSSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHCCCchhhhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHHHHHHH
Confidence              0000011111  113  45667787866  5678999999999999999987       899988876544

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.90  E-value=7.6e-24  Score=188.88  Aligned_cols=198  Identities=17%  Similarity=0.143  Sum_probs=154.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC--------------------CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------------ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g--------------------~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+|.||.++|..|+++||+|++||+++++++.+++.+                    +.++++++++++++|+|
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDvv   88 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQ   88 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSEE
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCEE
Confidence            8999999999999999999999999999999999999987642                    34567888889999999


Q ss_pred             EEecCCH---------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc---CCcE-EecCCCCChHhh
Q 027255           61 IGMLADP---------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK---GGHF-LEAPVSGSKQPA  127 (226)
Q Consensus        61 i~~~p~~---------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~---g~~~-ld~pv~g~~~~a  127 (226)
                      |+|+|++         ..+++++   +++.+.++++++||++||+.|.+.+++.+.+.+.   | .| +|.++..+|..+
T Consensus        89 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~Pe~~  164 (478)
T 2y0c_A           89 FIAVGTPPDEDGSADLQYVLAAA---RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNPEFL  164 (478)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECCCCC
T ss_pred             EEEeCCCcccCCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEEChhhh
Confidence            9999986         7888888   7788889999999999999999999998888764   4 23 566777777777


Q ss_pred             ccCcE--------EEEeccCCC-----C--------CCCc---chh----------------------------------
Q 027255          128 ETGQL--------VILSAGEKD-----L--------GGIA---NPM----------------------------------  149 (226)
Q Consensus       128 ~~g~~--------~~~~gg~~~-----~--------~~~~---s~~----------------------------------  149 (226)
                      ..|.+        .+++|++..     .        ....   .++                                  
T Consensus       165 ~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la~  244 (478)
T 2y0c_A          165 KEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLAD  244 (478)
T ss_dssp             CTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77765        577776511     0        0000   000                                  


Q ss_pred             ---------hcc--cccccccCcccCCcc--chHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 027255          150 ---------FKG--KGPTMLQSNYAPAFP--LKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  202 (226)
Q Consensus       150 ---------~~~--~~~~~~~~~~~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  202 (226)
                               .+.  ..+++..+.|.++|.  -.++.||+.++.++++++|+++|+.++++++++.-
T Consensus       245 ~~Gid~~~v~~~i~~~~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~  310 (478)
T 2y0c_A          245 RFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQ  310 (478)
T ss_dssp             HTTCCHHHHHHHHHTSTTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHhcCCccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence                     000  112343446677664  45679999999999999999999999999988754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.90  E-value=3.7e-23  Score=178.12  Aligned_cols=135  Identities=17%  Similarity=0.201  Sum_probs=112.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||+++|..|+++||+|++|+|++++++.+.+.+              +..++++.++++++|+||+++|.
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp~  109 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPS  109 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCCH
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCCH
Confidence            6899999999999999999999999999999999999988754              24567888999999999999987


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecCC-CCHHHHHHHHHHHHh----cCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMST-VDHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~----~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                       ..+++++   +++.+.++++++||++++ +.+.+ +.+.+.+.+    ..+.++++|.+..+..+..++..++.+.+.
T Consensus       110 -~~~~~vl---~~i~~~l~~~~ivvs~~kGi~~~t-~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~  183 (356)
T 3k96_A          110 -FAFHEVI---TRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNS  183 (356)
T ss_dssp             -HHHHHHH---HHHGGGCCTTCEEEECCCSCBTTT-BCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCH
T ss_pred             -HHHHHHH---HHHHHhcCCCCEEEEEeCCCCcCc-cCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCH
Confidence             6899998   788888989999999987 45544 444444433    466789999999988888888877777665

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.90  E-value=1.2e-23  Score=185.88  Aligned_cols=199  Identities=15%  Similarity=0.117  Sum_probs=155.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+|.||.++|..|+++||+|++|||++++++.+.+.                   | +..+++++++++++|+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            899999999999999999999999999999999999988762                   3 55677888899999999


Q ss_pred             EEecCCHHH---------HHHHhhcccccccccCC---CcEEEecCCCCHHH-HHHHHHHHHhc-CCcE-EecCCCCChH
Q 027255           61 IGMLADPAA---------ALSVVFDKGGVLEQICP---GKGYIDMSTVDHET-SIKISRAITSK-GGHF-LEAPVSGSKQ  125 (226)
Q Consensus        61 i~~~p~~~~---------~~~v~~~~~~l~~~l~~---g~ivvd~st~~~~~-~~~l~~~~~~~-g~~~-ld~pv~g~~~  125 (226)
                      |+|+|++..         +++++   +++.+.+++   +++||++||+.|.+ .+.+.+.+.+. +..+ ++.++..+|.
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe  157 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC---REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH---HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHH---HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcc
Confidence            999998665         88887   777788888   99999999999988 77888888775 6655 5666666766


Q ss_pred             hhccCcE--------EEEeccCC------------CCC----------------------------------------CC
Q 027255          126 PAETGQL--------VILSAGEK------------DLG----------------------------------------GI  145 (226)
Q Consensus       126 ~a~~g~~--------~~~~gg~~------------~~~----------------------------------------~~  145 (226)
                      ....|..        .+++|++.            ..+                                        ..
T Consensus       158 ~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid  237 (436)
T 1mv8_A          158 FLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVD  237 (436)
T ss_dssp             CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6666665        57777762            011                                        00


Q ss_pred             cchhhc--ccccccc--cCcccC--CccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 027255          146 ANPMFK--GKGPTML--QSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  202 (226)
Q Consensus       146 ~s~~~~--~~~~~~~--~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a  202 (226)
                      ...+.+  ...+++.  .+.+.+  +|...++.||+.++.++++++|+++|+.++++++.+..
T Consensus       238 ~~~v~~~~~~~~r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~  300 (436)
T 1mv8_A          238 GREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQ  300 (436)
T ss_dssp             HHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHh
Confidence            000001  1123454  566666  57778999999999999999999999999998876543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.90  E-value=4.3e-23  Score=180.96  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=118.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC------------------CCcccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH------------------GATVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~------------------g~~~~~s~~~~~~~advvi~   62 (226)
                      |||+|||+|.||.+||..|++ ||+|++||+++++++.+.+.                  ++++++++++++++||+||+
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvVii  115 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVII  115 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEEE
Confidence            799999999999999999998 99999999999999988762                  45677889999999999999


Q ss_pred             ecCCH----------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcE
Q 027255           63 MLADP----------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQL  132 (226)
Q Consensus        63 ~~p~~----------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~  132 (226)
                      |+|++          ..+++++   +++.+ ++++++||++||+.|.+++++.+.+.+.+  ++.+|+++.+..+..+.+
T Consensus       116 aVPt~~~~~~~~~Dl~~V~~v~---~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~--v~~sPe~~~~G~A~~~~l  189 (432)
T 3pid_A          116 ATPTDYDPKTNYFNTSTVEAVI---RDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDN--VIFSPEFLREGRALYDNL  189 (432)
T ss_dssp             CCCCEEETTTTEEECHHHHHHH---HHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCC--EEECCCCCCTTSHHHHHH
T ss_pred             eCCCccccccccccHHHHHHHH---HHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhcc--EeecCccCCcchhhhccc
Confidence            99986          3677887   77888 89999999999999999999999987765  455999999999988888


Q ss_pred             ---EEEeccCC
Q 027255          133 ---VILSAGEK  140 (226)
Q Consensus       133 ---~~~~gg~~  140 (226)
                         .+++||+.
T Consensus       190 ~p~rIvvG~~~  200 (432)
T 3pid_A          190 HPSRIVIGERS  200 (432)
T ss_dssp             SCSCEEESSCS
T ss_pred             CCceEEecCCH
Confidence               79999987

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.88  E-value=2.7e-23  Score=185.06  Aligned_cols=135  Identities=16%  Similarity=0.168  Sum_probs=115.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHH-------------------CCCcccCCHHHHhhhCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~-------------------~g~~~~~s~~~~~~~adv   59 (226)
                      |||+|||+|.||.+||.+|+++  ||+|++|||++++++.+.+                   .++..++++.++++++|+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            6899999999999999999998  8999999999999888642                   245667888899999999


Q ss_pred             EEEecCCHHH--------------HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           60 TIGMLADPAA--------------ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        60 vi~~~p~~~~--------------~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ||+|+|++..              +.+++   +++.+.++++++||++||+.|.+.+++.+.+.+.+..++|+||+++|.
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe  162 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACA---RRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPE  162 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHH---HHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHH
Confidence            9999988654              34444   566777889999999999999999999999988776778999999999


Q ss_pred             hhccCcEE--------EEecc
Q 027255          126 PAETGQLV--------ILSAG  138 (226)
Q Consensus       126 ~a~~g~~~--------~~~gg  138 (226)
                      .+..|.+.        +++||
T Consensus       163 ~~~~G~~~~d~~~~~rivvGg  183 (467)
T 2q3e_A          163 FLAEGTAIKDLKNPDRVLIGG  183 (467)
T ss_dssp             CCCTTSHHHHHHSCSCEEEEC
T ss_pred             HhhcccchhhccCCCEEEECC
Confidence            88889876        78888

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.88  E-value=1.8e-22  Score=180.29  Aligned_cols=195  Identities=15%  Similarity=0.091  Sum_probs=146.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHC-------------------CCcccCCHHHHhhhCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH-------------------GATVGGSPAEVIKKCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~adv   59 (226)
                      |||+|||+|.||.++|.+|+++  ||+|++|||++++++.+.+.                   ++..++++.++++++|+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            6899999999999999999998  79999999999999988752                   23456677888999999


Q ss_pred             EEEecCCHH--------------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHh-cCC------cEEec
Q 027255           60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS-KGG------HFLEA  118 (226)
Q Consensus        60 vi~~~p~~~--------------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~-~g~------~~ld~  118 (226)
                      ||+|+|++.              .+++++   +++.+.++++++||++||+.|.+.+++.+.+.+ .++      .+..+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~  166 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS---RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSN  166 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEEC
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH---HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEeC
Confidence            999998864              477777   778888999999999999999999999999887 552      24666


Q ss_pred             CCCCChHhhccCcE---EEEeccCCC----------------CCCCcchh------------------------------
Q 027255          119 PVSGSKQPAETGQL---VILSAGEKD----------------LGGIANPM------------------------------  149 (226)
Q Consensus       119 pv~g~~~~a~~g~~---~~~~gg~~~----------------~~~~~s~~------------------------------  149 (226)
                      |.+..+..+....+   .+++||+..                .+. ...+                              
T Consensus       167 Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~  245 (481)
T 2o3j_A          167 PEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVP-RNRIITTNTWSSELSKLVANAFLAQRISSINSIS  245 (481)
T ss_dssp             CCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSC-GGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcC-CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665554432212   477777641                110 0000                              


Q ss_pred             -------------hc--ccccccccCcccCCc--cchHHHHHHHHHHHHHhhcCCC--chHHHHHHHHH
Q 027255          150 -------------FK--GKGPTMLQSNYAPAF--PLKHQQKDMRLALALGDENAVS--MPIAAAANEAF  199 (226)
Q Consensus       150 -------------~~--~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~  199 (226)
                                   .+  ...+++....|.|+|  ...++.||+.++...|+++|++  +|+.+++.++=
T Consensus       246 ~la~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N  314 (481)
T 2o3j_A          246 AVCEATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININ  314 (481)
T ss_dssp             HHHHHHSCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCHHHHHHHHccCCCCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHH
Confidence                         00  012345455677765  7788999999999999999999  89988876543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.86  E-value=6.1e-23  Score=168.22  Aligned_cols=134  Identities=17%  Similarity=0.276  Sum_probs=110.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh--------------HHHHHHC-CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--------------CDELVAH-GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~--------------~~~l~~~-g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+|.||++||++|+++||+|++|||++++              .+.+.+. +...+.++.++++++|+||+|+|
T Consensus        20 ~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVilavp   99 (245)
T 3dtt_A           20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNATE   99 (245)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEccC
Confidence            68999999999999999999999999999999997              5666543 66677889999999999999999


Q ss_pred             CHHHHHHHhhccccc-ccccCCCcEEEecC-----------CCCHHHHHHHHHHHHh--------cCCcEEecCCCCChH
Q 027255           66 DPAAALSVVFDKGGV-LEQICPGKGYIDMS-----------TVDHETSIKISRAITS--------KGGHFLEAPVSGSKQ  125 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l-~~~l~~g~ivvd~s-----------t~~~~~~~~l~~~~~~--------~g~~~ld~pv~g~~~  125 (226)
                      .+. ..+++   ..+ .+.+ ++++|||++           |+.|.+...+++.+.+        +++.++++|+++++.
T Consensus       100 ~~~-~~~~~---~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~~~~~  174 (245)
T 3dtt_A          100 GAS-SIAAL---TAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPG  174 (245)
T ss_dssp             GGG-HHHHH---HHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHHHCGG
T ss_pred             cHH-HHHHH---HHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHhcCcc
Confidence            854 44555   344 4556 899999999           5666666666666665        378999999999999


Q ss_pred             hhccCcEEEEeccC
Q 027255          126 PAETGQLVILSAGE  139 (226)
Q Consensus       126 ~a~~g~~~~~~gg~  139 (226)
                      .++.+++.+|++|+
T Consensus       175 ~a~~g~~~~~v~g~  188 (245)
T 3dtt_A          175 RAAGGDHSVFVSGN  188 (245)
T ss_dssp             GTGGGCCCEEEECS
T ss_pred             ccCCCCeeEEEECC
Confidence            99899998998876

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.86  E-value=4.4e-22  Score=164.21  Aligned_cols=186  Identities=15%  Similarity=0.220  Sum_probs=141.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||+|||+|.||..||.+|.++| ++|++|||++++.+.+.+. |+..+.++.+++ ++|+||+|+| +.++++++   .
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~---~   75 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC---K   75 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH---T
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH---H
Confidence            89999999999999999999999 9999999999999998875 888888888888 9999999999 78899998   6


Q ss_pred             ccccccCCCcEEEec-CCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEecc--CC-----------C---
Q 027255           79 GVLEQICPGKGYIDM-STVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG--EK-----------D---  141 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg--~~-----------~---  141 (226)
                      ++.+  + +++||++ ++..+   +.+.+.+.+ +.+++++ +.+.+.....|...++.++  ++           .   
T Consensus        76 ~l~~--~-~~ivv~~~~g~~~---~~l~~~~~~-~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~  147 (263)
T 1yqg_A           76 NIRT--N-GALVLSVAAGLSV---GTLSRYLGG-TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGL  147 (263)
T ss_dssp             TCCC--T-TCEEEECCTTCCH---HHHHHHTTS-CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEE
T ss_pred             Hhcc--C-CCEEEEecCCCCH---HHHHHHcCC-CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCC
Confidence            6655  4 8999998 55665   455555543 6789988 7777888888888777776  32           0   


Q ss_pred             ---CC-C----------Ccch-------------------------------------hhcccc--c-ccccCcccCCcc
Q 027255          142 ---LG-G----------IANP-------------------------------------MFKGKG--P-TMLQSNYAPAFP  167 (226)
Q Consensus       142 ---~~-~----------~~s~-------------------------------------~~~~~~--~-~~~~~~~~~~~~  167 (226)
                         .+ .          +..+                                     ++...+  | .+..+.+.|+|+
T Consensus       148 ~~~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (263)
T 1yqg_A          148 TVWLDDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGT  227 (263)
T ss_dssp             EEECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSH
T ss_pred             EEEeCChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChh
Confidence               11 0          0000                                     001111  2 233455667777


Q ss_pred             chHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 027255          168 LKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG  206 (226)
Q Consensus       168 ~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g  206 (226)
                      +..+.|++       ++.|++.|+.+++.+.|+++.+.|
T Consensus       228 ~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~  259 (263)
T 1yqg_A          228 THEAVEAF-------RRHRVAEAISEGVCACVRRSQEME  259 (263)
T ss_dssp             HHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHH
Confidence            77666666       668999999999999999998765

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.86  E-value=3.5e-21  Score=168.37  Aligned_cols=192  Identities=16%  Similarity=0.130  Sum_probs=146.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC------------------cccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA------------------TVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~------------------~~~~s~~~~~~~advvi~   62 (226)
                      |||+|||+|.||.++|.+|++ ||+|++|||++++++.+.+.+.                  ..++++.++++++|+||+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            899999999999999999999 9999999999999999987664                  345678888999999999


Q ss_pred             ecCCHH----------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcE
Q 027255           63 MLADPA----------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQL  132 (226)
Q Consensus        63 ~~p~~~----------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~  132 (226)
                      |+|++.          .+++++   +++.+ ++++++||++||+.|.+.+++.+.+.+.  .++.+|.+..+..+..+.+
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~---~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~  153 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI---KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL  153 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH---HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred             ecCCCcccCCCCccHHHHHHHH---HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence            999963          688888   77878 8899999999999999999999887654  7889998877765543333


Q ss_pred             E---EEeccCCCC-----------------CCCc-c-hh-----------------------------------------
Q 027255          133 V---ILSAGEKDL-----------------GGIA-N-PM-----------------------------------------  149 (226)
Q Consensus       133 ~---~~~gg~~~~-----------------~~~~-s-~~-----------------------------------------  149 (226)
                      .   +++|++...                 .... . ++                                         
T Consensus       154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~  233 (402)
T 1dlj_A          154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSH  233 (402)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            2   677775410                 0000 0 00                                         


Q ss_pred             --hc--ccccccccCcccC--CccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 027255          150 --FK--GKGPTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK  201 (226)
Q Consensus       150 --~~--~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  201 (226)
                        .+  ...+++....+.|  +|...++.||+.++.+.++  |+++|+++++.++-+.
T Consensus       234 ~v~~~~~~~~ri~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~  289 (402)
T 1dlj_A          234 MIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNV  289 (402)
T ss_dssp             HHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCCcCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHH
Confidence              00  0113343344556  5678899999999999885  8899999998776554

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.84  E-value=2.4e-21  Score=170.12  Aligned_cols=136  Identities=17%  Similarity=0.195  Sum_probs=108.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-CCHHHH---------------hhhCCeEEEecC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GSPAEV---------------IKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s~~~~---------------~~~advvi~~~p   65 (226)
                      |..|||+|.||.+||.+|+++||+|++||+++++++.+++...... ..++++               +++||+||+|+|
T Consensus        13 ~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~Vp   92 (431)
T 3ojo_A           13 KLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVP   92 (431)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEECCC
T ss_pred             ccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEEEeC
Confidence            6889999999999999999999999999999999999987432111 111111               347999999999


Q ss_pred             CHH-----------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHh-cCC------cEEecCCCCChHhh
Q 027255           66 DPA-----------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS-KGG------HFLEAPVSGSKQPA  127 (226)
Q Consensus        66 ~~~-----------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~-~g~------~~ld~pv~g~~~~a  127 (226)
                      ++.           .++.+.   +++.+.+++|++||++||+.|.+++++.+.+.+ .|.      .++++|.+..+..+
T Consensus        93 Tp~~~~~~~~~Dl~~V~~~~---~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~A  169 (431)
T 3ojo_A           93 TPNNDDQYRSCDISLVMRAL---DSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKI  169 (431)
T ss_dssp             CCBCSSSSCBBCCHHHHHHH---HHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTSH
T ss_pred             CCccccccCCccHHHHHHHH---HHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcch
Confidence            976           255555   788899999999999999999999999987655 553      78999999888776


Q ss_pred             ccCcE---EEEeccCC
Q 027255          128 ETGQL---VILSAGEK  140 (226)
Q Consensus       128 ~~g~~---~~~~gg~~  140 (226)
                      ..+.+   .+++|+++
T Consensus       170 ~~~~~~p~~Iv~G~~~  185 (431)
T 3ojo_A          170 LEELVHNNRIIGGVTK  185 (431)
T ss_dssp             HHHHHHSCEEEEESSH
T ss_pred             hhcccCCCEEEEeCCH
Confidence            65554   57888765

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.82  E-value=3.8e-20  Score=158.00  Aligned_cols=115  Identities=20%  Similarity=0.223  Sum_probs=93.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC-----------CcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-----------ATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-----------~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |||+|||+|+||++||.+|+++||+|++|+|++++.+.+.+.|           +..+.++++ ++.+|+||+|+|+ .+
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~~   92 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-QY   92 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-GG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-HH
Confidence            7999999999999999999999999999999999999998876           466778888 8899999999986 88


Q ss_pred             HHHHhhcccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhc-C--CcEEecCCCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSK-G--GHFLEAPVSGS  123 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~-g--~~~ld~pv~g~  123 (226)
                      +++++   .++.+   ++++||++++ +.+.+.+.+++.+.+. +  ..++.+|....
T Consensus        93 ~~~v~---~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~  144 (335)
T 1z82_A           93 IREHL---LRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAE  144 (335)
T ss_dssp             HHHHH---TTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHH
T ss_pred             HHHHH---HHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHH
Confidence            99998   56654   7899999985 5665556666666554 2  33455555443

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.82  E-value=3.2e-20  Score=157.82  Aligned_cols=131  Identities=13%  Similarity=0.215  Sum_probs=103.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC----CeEEEEcCCch--hHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLS--KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G----~~V~~~dr~~~--~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      |||+|||+|.||.+||.+|.++|    |+|++|||+++  +.+.+.+.|+..+.++.++++++|+||+|+| +..+++++
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~vl  101 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPFIL  101 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHHHH
Confidence            68999999999999999999999    89999999986  8888888899988899999999999999998 57899998


Q ss_pred             hcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--CCcEEecCCCCChHhhccCcEEEEeccC
Q 027255           75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLEAPVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~~ld~pv~g~~~~a~~g~~~~~~gg~  139 (226)
                         .++.+.++++++||++++..+.  ..+.+.+.+.  +..++.+. ...+.....|. +++++|+
T Consensus       102 ---~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~-p~~p~~~~~g~-~v~~~g~  161 (322)
T 2izz_A          102 ---DEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCM-TNTPVVVREGA-TVYATGT  161 (322)
T ss_dssp             ---HHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEE-CCGGGGGTCEE-EEEEECT
T ss_pred             ---HHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEe-CCcHHHHcCCe-EEEEeCC
Confidence               6777888889999999765432  3456666553  34455442 23333444554 6777777

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.80  E-value=2e-19  Score=148.01  Aligned_cols=125  Identities=14%  Similarity=0.226  Sum_probs=102.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |||+|||+|.||..++++|.+.|++|.+|||++++.+.+.+. |+..+.++.++++++|+||+|+| +..+++++   ..
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~---~~   79 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL---KP   79 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH---TT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHH---HH
Confidence            799999999999999999999999999999999999988765 88888899999999999999999 57788887   43


Q ss_pred             cccccCCCcEEEecC-CCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEecc
Q 027255           80 VLEQICPGKGYIDMS-TVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG  138 (226)
Q Consensus        80 l~~~l~~g~ivvd~s-t~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg  138 (226)
                      +    .+++++|+++ +..+..   +.+.+. .+..+++ ++.+.+.....|...++.++
T Consensus        80 l----~~~~~vv~~~~~~~~~~---l~~~~~-~~~~~v~-~~p~~~~~~~~g~~~i~~~~  130 (259)
T 2ahr_A           80 L----HFKQPIISMAAGISLQR---LATFVG-QDLPLLR-IMPNMNAQILQSSTALTGNA  130 (259)
T ss_dssp             S----CCCSCEEECCTTCCHHH---HHHHHC-TTSCEEE-EECCGGGGGTCEEEEEEECT
T ss_pred             h----ccCCEEEEeCCCCCHHH---HHHhcC-CCCCEEE-EcCCchHHHcCceEEEEcCC
Confidence            3    3788999985 566653   444443 4667887 77777887888877677665

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.80  E-value=5.4e-20  Score=158.79  Aligned_cols=138  Identities=12%  Similarity=0.104  Sum_probs=102.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhhCCeEEEecCCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      ||+|||+|.||.+||.+|+++||+|++|||++++++.+.+.+              +..+.++.++++++|+||+|+|+ 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999999999999999999998887653              34567888999999999999986 


Q ss_pred             HHHHHHhhc-ccccccccCC-CcEEEecCC-CCHHHHHHHHHHHHhc-C---CcEEecCCCCChHhhccCcEEEEeccCC
Q 027255           68 AAALSVVFD-KGGVLEQICP-GKGYIDMST-VDHETSIKISRAITSK-G---GHFLEAPVSGSKQPAETGQLVILSAGEK  140 (226)
Q Consensus        68 ~~~~~v~~~-~~~l~~~l~~-g~ivvd~st-~~~~~~~~l~~~~~~~-g---~~~ld~pv~g~~~~a~~g~~~~~~gg~~  140 (226)
                      .++++++.. +.++.+.+.+ +++||++++ +.+...+.+.+.+.+. +   ..++.+|.+..........+.++.+++.
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~~~~~~  175 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADI  175 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEECSSH
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEEecCCH
Confidence            788888822 1127777777 899999984 5665555566666554 3   3456666665443444445555555553

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.79  E-value=8.5e-19  Score=148.52  Aligned_cols=132  Identities=17%  Similarity=0.214  Sum_probs=111.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCC--cccCCHHH-HhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA--TVGGSPAE-VIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~--~~~~s~~~-~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      |||+|||+|.||..||+.|.+.|+  +|++|||++++.+.+.+.|+  ..+.++++ +++++|+||+|+|. ..+.+++ 
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl-  111 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-  111 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCG-GGHHHHH-
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCH-HHHHHHH-
Confidence            589999999999999999999999  99999999999999888887  45778888 89999999999998 4677787 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe-cCCCCC----hHhhc----cCcEEEEeccC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGS----KQPAE----TGQLVILSAGE  139 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld-~pv~g~----~~~a~----~g~~~~~~gg~  139 (226)
                        .++.+.++++++|+|++++.+...+.+.+.+.+   .|+. .|++|+    +..+.    .|..++++.++
T Consensus       112 --~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~  179 (314)
T 3ggo_A          112 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTK  179 (314)
T ss_dssp             --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCT
T ss_pred             --HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCC
Confidence              778888999999999999988878888877654   7888 499885    44443    57788888654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.79  E-value=1.2e-19  Score=152.73  Aligned_cols=131  Identities=15%  Similarity=0.204  Sum_probs=96.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC------------CHHHHhh---hCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG------------SPAEVIK---KCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~------------s~~~~~~---~advvi~~~p   65 (226)
                      |||+|||+|.||..+|..|.++||+|++|||++++.+.+.+.|+....            +..++.+   ++|+||+|+|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            699999999999999999999999999999999999998877644321            3445544   8999999998


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc----CCcEEecCCCCCh--HhhccCcEEEEe
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSK--QPAETGQLVILS  136 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~----g~~~ld~pv~g~~--~~a~~g~~~~~~  136 (226)
                      . ..+++++   +++.+.++++++||++++... ..+.+.+.+.+.    |..+.+++++++.  .....|.+.+..
T Consensus        84 ~-~~~~~v~---~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~  155 (316)
T 2ew2_A           84 A-QQLDAMF---KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELEN  155 (316)
T ss_dssp             H-HHHHHHH---HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEE
T ss_pred             c-ccHHHHH---HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEee
Confidence            6 5788888   778888888999999987432 334555555443    3334455555532  234456666653

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.78  E-value=2.4e-19  Score=155.29  Aligned_cols=136  Identities=18%  Similarity=0.138  Sum_probs=100.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-------CeEEEEcCCch-----hHHHHHHC--------------CCcccCCHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI   54 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-------~~V~~~dr~~~-----~~~~l~~~--------------g~~~~~s~~~~~   54 (226)
                      |||+|||+|.||++||.+|+++|       |+|++|||+++     +.+.+.+.              ++..++++.+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            58999999999999999999999       99999999998     88887663              245567888999


Q ss_pred             hhCCeEEEecCCHHHHHHHhhccccccc----ccCCCcEEEecCCC-CH--HHHHHHHHHHHhc---CCcEEecCCCCCh
Q 027255           55 KKCTITIGMLADPAAALSVVFDKGGVLE----QICPGKGYIDMSTV-DH--ETSIKISRAITSK---GGHFLEAPVSGSK  124 (226)
Q Consensus        55 ~~advvi~~~p~~~~~~~v~~~~~~l~~----~l~~g~ivvd~st~-~~--~~~~~l~~~~~~~---g~~~ld~pv~g~~  124 (226)
                      +++|+||+|+|+ ..+++++   .++.+    .++++++||++++. .+  ...+.+.+.+.+.   ...++.+|.+...
T Consensus       102 ~~aDvVilav~~-~~~~~vl---~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~  177 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVL---ASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMD  177 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHH---HHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHHH
T ss_pred             cCCCEEEEcCCH-HHHHHHH---HHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHHH
Confidence            999999999986 7899998   67777    78889999999864 44  1223344444332   2345566665544


Q ss_pred             HhhccCcEEEEeccCC
Q 027255          125 QPAETGQLVILSAGEK  140 (226)
Q Consensus       125 ~~a~~g~~~~~~gg~~  140 (226)
                      ........+++.+++.
T Consensus       178 v~~g~~~~~~~~~~~~  193 (375)
T 1yj8_A          178 VAMENFSEATIGGNDK  193 (375)
T ss_dssp             HHTTCCEEEEEECSCH
T ss_pred             HHhCCCeEEEEecCCH
Confidence            4444555556666654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.77  E-value=1.9e-18  Score=147.73  Aligned_cols=132  Identities=17%  Similarity=0.285  Sum_probs=110.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh----CCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK----CTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~----advvi~~~p~~~~~~~v~~~   76 (226)
                      |||+|||+|.||..||+.|.++|++|++|||++++.+.+.+.|+..+.++.+++++    +|+||+|+|. ..+.+++  
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl--   85 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL--   85 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH--
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH--
Confidence            58999999999999999999999999999999999999988999888899888765    6999999996 6788888  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe-cCCCCCh-Hhhc-------cCcEEEEeccC
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGSK-QPAE-------TGQLVILSAGE  139 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld-~pv~g~~-~~a~-------~g~~~~~~gg~  139 (226)
                       +++.+. +++++|+|++++.+...+.+.+.+.  +..|++ .|++|++ .+..       .+..++++.++
T Consensus        86 -~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~  153 (341)
T 3ktd_A           86 -DAVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQ  153 (341)
T ss_dssp             -HHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGG
T ss_pred             -HHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCC
Confidence             667664 7899999999999888777776542  578999 5999976 3332       34567888764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.76  E-value=1.5e-18  Score=147.50  Aligned_cols=106  Identities=20%  Similarity=0.270  Sum_probs=88.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcC--CchhHHHHHHCCC-----------cccC--CHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR--TLSKCDELVAHGA-----------TVGG--SPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr--~~~~~~~l~~~g~-----------~~~~--s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+|.||..+|.+|.++||+|++|+|  ++++.+.+.+.|.           ..+.  ++.++++++|+||+|+|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            8999999999999999999999999999999  9999999988764           3445  77788899999999998


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCC-C---CHHHHHHHHHHHHhc
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMST-V---DHETSIKISRAITSK  111 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st-~---~~~~~~~l~~~~~~~  111 (226)
                      .+ .+++++   .++.+ +.++++||++++ .   .|...+.+.+.+.+.
T Consensus        81 ~~-~~~~v~---~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~  125 (335)
T 1txg_A           81 TD-GVLPVM---SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLK  125 (335)
T ss_dssp             GG-GHHHHH---HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTS
T ss_pred             hH-HHHHHH---HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHh
Confidence            84 788888   67778 888999999984 4   444556677777653

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.76  E-value=5.8e-19  Score=147.85  Aligned_cols=125  Identities=16%  Similarity=0.255  Sum_probs=98.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-------CCcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------GATVGGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      ++|+|||+|.||.+||.+|+ +||+|++|||++++++++.+.       +++.++++++ +++||+||.|+|++..++..
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~   90 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVE   90 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHH
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHH
Confidence            58999999999999999999 999999999999999988876       7778888887 89999999999999999988


Q ss_pred             hhcccccccccCCCcEEE-ecCCCCHHHHHHHHH-HHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255           74 VFDKGGVLEQICPGKGYI-DMSTVDHETSIKISR-AITSKGGHFLEAPVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivv-d~st~~~~~~~~l~~-~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~  139 (226)
                      ++++  + ..+ ++++++ |+||++|....+..+ ..+..|.+|++ |+.+.       .++.++.|.
T Consensus        91 l~~~--l-~~~-~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv~~~-------~lveiv~g~  146 (293)
T 1zej_A           91 VLRE--V-ERL-TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PPHVM-------PLVEIVISR  146 (293)
T ss_dssp             HHHH--H-HTT-CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-STTTC-------CEEEEEECT
T ss_pred             HHHH--H-hcC-CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-ccccC-------CEEEEECCC
Confidence            8753  4 344 888885 788888875443221 11234888998 66543       455566554

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.75  E-value=4.4e-18  Score=145.99  Aligned_cols=136  Identities=15%  Similarity=0.103  Sum_probs=96.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-------CeEEEEcCCch-----hHHHHHHC--------------CCcccCCHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI   54 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-------~~V~~~dr~~~-----~~~~l~~~--------------g~~~~~s~~~~~   54 (226)
                      |||+|||+|.||..||..|+++|       |+|++|+|+++     +.+.+.+.              ++..+.++.+++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA   88 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence            58999999999999999999999       99999999998     88877652              234457888889


Q ss_pred             hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC-C--HHHHHHHHHHHHhc-C--CcEEecCCCCChHhhc
Q 027255           55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-D--HETSIKISRAITSK-G--GHFLEAPVSGSKQPAE  128 (226)
Q Consensus        55 ~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~--~~~~~~l~~~~~~~-g--~~~ld~pv~g~~~~a~  128 (226)
                      +++|+||+|+|. ..+++++   +++.+.++++++||++++. .  |...+.+.+.+.+. +  ..++.+|.+.......
T Consensus        89 ~~aD~Vilav~~-~~~~~v~---~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v~~g  164 (354)
T 1x0v_A           89 EDADILIFVVPH-QFIGKIC---DQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADE  164 (354)
T ss_dssp             TTCSEEEECCCG-GGHHHHH---HHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCHHHHHTT
T ss_pred             cCCCEEEEeCCH-HHHHHHH---HHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcHHHHHhc
Confidence            999999999987 6888888   7788888889999999873 3  23223333333322 3  3345555543322222


Q ss_pred             cCcEEEEeccCC
Q 027255          129 TGQLVILSAGEK  140 (226)
Q Consensus       129 ~g~~~~~~gg~~  140 (226)
                      ..+..++.+++.
T Consensus       165 ~~~~~~~~~~~~  176 (354)
T 1x0v_A          165 KFCETTIGCKDP  176 (354)
T ss_dssp             CCEEEEEECSSH
T ss_pred             CCceEEEEECCH
Confidence            334555555543

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.75  E-value=5.5e-18  Score=141.63  Aligned_cols=132  Identities=15%  Similarity=0.218  Sum_probs=106.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHCCC--cccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~g~--~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||+|||+|.||..+|+.|.++  |++|++|||++++.+.+.+.|.  ..+.++.++++++|+||+|+|.. ..++++  
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~--   83 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK-KTIDFI--   83 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH-HHHHHH--
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH-HHHHHH--
Confidence            6899999999999999999987  6899999999999998888876  35678888889999999999884 558887  


Q ss_pred             ccccccc-cCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe-cCCCC----ChHhhc----cCcEEEEe
Q 027255           77 KGGVLEQ-ICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSG----SKQPAE----TGQLVILS  136 (226)
Q Consensus        77 ~~~l~~~-l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld-~pv~g----~~~~a~----~g~~~~~~  136 (226)
                       +++.+. ++++++|++++++.+...+.+.+.+.+++++|++ .|++|    ++..+.    .|..++++
T Consensus        84 -~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~  152 (290)
T 3b1f_A           84 -KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFS  152 (290)
T ss_dssp             -HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEE
T ss_pred             -HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEe
Confidence             667777 8899999999998887777888777655788988 48876    444443    56655555

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.73  E-value=1.1e-17  Score=146.95  Aligned_cols=196  Identities=17%  Similarity=0.138  Sum_probs=134.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhhCCeEE
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~~~~~~advvi   61 (226)
                      +|+|||+|.+|.++|..|+++||+|+++|.++++++.+++.                    ..++++++.++++.+|++|
T Consensus        23 ~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~~  102 (444)
T 3vtf_A           23 SLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDATF  102 (444)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCceE
Confidence            79999999999999999999999999999999999887642                    1356778899999999999


Q ss_pred             EecCCH---------HHHHHHhhcccccccccC---CCcEEEecCCCCHHHHHHHHHHHHhc-----CCcEEecCCCCCh
Q 027255           62 GMLADP---------AAALSVVFDKGGVLEQIC---PGKGYIDMSTVDHETSIKISRAITSK-----GGHFLEAPVSGSK  124 (226)
Q Consensus        62 ~~~p~~---------~~~~~v~~~~~~l~~~l~---~g~ivvd~st~~~~~~~~l~~~~~~~-----g~~~ld~pv~g~~  124 (226)
                      +|+|++         ..++.+.   +.+.+.++   ++++||..||+.|.+++++...+.+.     .+.+..+|-+=.+
T Consensus       103 I~VpTP~~~d~~~Dl~~v~~a~---~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PErl~e  179 (444)
T 3vtf_A          103 IAVGTPPAPDGSADLRYVEAAA---RAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLRE  179 (444)
T ss_dssp             ECCCCCBCTTSSBCCHHHHHHH---HHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCCCCT
T ss_pred             EEecCCCCCCCCCCcHHHHHHH---HHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcccccC
Confidence            999875         2455555   55555553   68899999999999998876554332     2345566654333


Q ss_pred             Hhh----ccCcEEEEeccCC----------------------------------------------------CCCCCcch
Q 027255          125 QPA----ETGQLVILSAGEK----------------------------------------------------DLGGIANP  148 (226)
Q Consensus       125 ~~a----~~g~~~~~~gg~~----------------------------------------------------~~~~~~s~  148 (226)
                      -.+    ....- +++|+..                                                    ..|.....
T Consensus       180 G~a~~d~~~~~r-iViG~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~GiDv~e  258 (444)
T 3vtf_A          180 GSALEDFFKPDR-IVIGAGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFANEVGLLAKRLGVDTYR  258 (444)
T ss_dssp             TSHHHHHHSCSC-EEEEESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CccccccccCCc-EEEcCCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            222    12222 4455543                                                    00111011


Q ss_pred             hhcccc--cccccCcccC--CccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 027255          149 MFKGKG--PTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK  201 (226)
Q Consensus       149 ~~~~~~--~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  201 (226)
                      +.+..+  +++-..-+.|  ||.=.++-||..+....|+++|+++++.+++.++=+.
T Consensus       259 V~~a~~~d~rig~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~  315 (444)
T 3vtf_A          259 VFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEY  315 (444)
T ss_dssp             HHHHHHTSTTSCSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHhccCCCCCCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHH
Confidence            111111  2332223344  4566888999999999999999999999988776543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.72  E-value=4.6e-16  Score=133.31  Aligned_cols=118  Identities=15%  Similarity=0.201  Sum_probs=93.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CC--------------cccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--------------TVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~--------------~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+|.||..+|..|.++|++|++|+|++++.+.+.+. +.              ..+.+++++++++|+||+|+|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            689999999999999999999999999999999999988775 32              356788888899999999999


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcC---CcEEe---cCCCCC
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG---GHFLE---APVSGS  123 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g---~~~ld---~pv~g~  123 (226)
                      .. ..++++   +.+.+.++++++||++.+..+.. .++.+.+.+.+   +.|++   .|+.+.
T Consensus        85 ~~-~~~~~~---~~l~~~l~~~~~vv~~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~  143 (359)
T 1bg6_A           85 AI-HHASIA---ANIASYISEGQLIILNPGATGGA-LEFRKILRENGAPEVTIGETSSMLFTCR  143 (359)
T ss_dssp             GG-GHHHHH---HHHGGGCCTTCEEEESSCCSSHH-HHHHHHHHHTTCCCCEEEEESSCSEEEE
T ss_pred             ch-HHHHHH---HHHHHhCCCCCEEEEcCCCchHH-HHHHHHHHhcCCCCeEEEEecCCcEEEE
Confidence            85 457777   67778888999999985534433 33566666654   55776   566553

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.72  E-value=6e-17  Score=134.73  Aligned_cols=129  Identities=19%  Similarity=0.248  Sum_probs=105.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCCc--ccCCHHHHhh-hCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT--VGGSPAEVIK-KCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~~--~~~s~~~~~~-~advvi~~~p~~~~~~~v~~   75 (226)
                      |+|+|||+|.||..+|+.|.++|+  +|++|||++++.+.+.+.|+.  .+.++.++++ ++|+||+|+|. ....+++ 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~-~~~~~v~-   79 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-   79 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCH-HHHHHHH-
Confidence            589999999999999999999999  999999999999888888875  3667888898 99999999988 4677777 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe-cCCCCC----hHhhc----cCcEEEEe
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGS----KQPAE----TGQLVILS  136 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld-~pv~g~----~~~a~----~g~~~~~~  136 (226)
                        .++.+.++++.+|++++++.+...+.+.+.+.+.   +++ .|++++    |..+.    .+..++++
T Consensus        80 --~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~---~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~  144 (281)
T 2g5c_A           80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILT  144 (281)
T ss_dssp             --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCCSCCSGGGCCSSTTTTCEEEEC
T ss_pred             --HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc---ceeeccccCCccCChhhhhhHHhCCCCEEEe
Confidence              6677778899999999998887778888877652   776 477764    34443    67767777

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.72  E-value=8.5e-19  Score=146.02  Aligned_cols=127  Identities=13%  Similarity=0.114  Sum_probs=91.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC---C----c-ccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---A----T-VGGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g---~----~-~~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      |||+|||+|.||..||.+|.++||+|++|+|++++.+.+...+   .    . ...+ .+.++++|+||+|+|.. .+++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~~~~   78 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-QVSD   78 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-GHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-hHHH
Confidence            8999999999999999999999999999999988766554433   1    1 2333 46778999999999885 5788


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHh--cCCc----EEecCCCCChHhhccCcEEEEe
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS--KGGH----FLEAPVSGSKQPAETGQLVILS  136 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~--~g~~----~ld~pv~g~~~~a~~g~~~~~~  136 (226)
                      ++   +++.+.++++++||++++.. ...+.+.+.+.+  .|..    ++++| .  +.....|.+.+..
T Consensus        79 v~---~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p-~--~~~~~~g~~~i~~  141 (291)
T 1ks9_A           79 AV---KSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGN-V--IIHVANGITHIGP  141 (291)
T ss_dssp             HH---HHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETT-E--EEEEECCCEEEEE
T ss_pred             HH---HHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCC-E--EEEecccceEEcc
Confidence            88   77888888899999986642 333344444433  2333    34555 2  4456677776655

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.72  E-value=7.2e-17  Score=134.03  Aligned_cols=129  Identities=20%  Similarity=0.349  Sum_probs=103.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc--ccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT--VGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~--~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||+|||+|.||..+++.|.+.|++|++|||++++.+.+.+.|+.  .+.++.++ +++|+||+|+|. ..+++++   +
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~---~   75 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL---E   75 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH---H
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH---H
Confidence            899999999999999999999999999999999999998887764  56788888 899999999986 5778888   6


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCC----hHhhc----cCcEEEEecc
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGS----KQPAE----TGQLVILSAG  138 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~----~~~a~----~g~~~~~~gg  138 (226)
                      ++.+.++++++|++++++.+...+.+.+.+.    +++++ |++|+    |..+.    .+..++++.+
T Consensus        76 ~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~----~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~  140 (279)
T 2f1k_A           76 KLIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPT  140 (279)
T ss_dssp             HHGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEEC
T ss_pred             HHHhhCCCCCEEEECCCCcHHHHHHHHHHhC----CEeecCcccCCccCCHHHHhHHHhCCCcEEEecC
Confidence            7778888899999998888877666655432    67777 88754    33332    4556666643

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.71  E-value=3.3e-18  Score=141.27  Aligned_cols=133  Identities=19%  Similarity=0.227  Sum_probs=103.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||+|||+|.||..++..|.+.|++ |.+|||++++.+.+.+. |+..+.+++++++++|+||+|+|++ .+++++   +
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~---~   86 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL---Q   86 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH---H
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH---H
Confidence            6899999999999999999999999 99999999999988776 8888889999989999999999985 568887   6


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEe-ccCC
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS-AGEK  140 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~-gg~~  140 (226)
                      ++.+.++++++||++++..+...  +.+.+.+.+..+.++|++|++.. ..+...+++ ++++
T Consensus        87 ~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~v~~~~~  146 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREV-DFKEIPFFIEASST  146 (266)
T ss_dssp             HHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCC-CCTTCCEEEEESSH
T ss_pred             HHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchh-hcCCCeEEEecCCH
Confidence            67777889999999999766432  44444444666788898876543 233444444 5543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.70  E-value=1.7e-17  Score=136.53  Aligned_cols=121  Identities=15%  Similarity=0.213  Sum_probs=90.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC----CeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G----~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||+|||+|.||+.||++|.++|    ++|++|||++++      .|+..+.++.++++++|+||+|+|. ..+++++  
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~--   75 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVL--   75 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHH--
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHH--
Confidence            68999999999999999999999    799999999887      5888888999999999999999996 6888888  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--CCcEEecCCCCChHhhccCcEEEEeccC
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLEAPVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~~ld~pv~g~~~~a~~g~~~~~~gg~  139 (226)
                       .++.+.++++.++.+++++.+..   +.+.+.+.  .+.++    .+.|.....| .+++++++
T Consensus        76 -~~l~~~l~~~~vv~~~~gi~~~~---l~~~~~~~~~~v~~~----p~~p~~~~~g-~~~~~~~~  131 (262)
T 2rcy_A           76 -NNIKPYLSSKLLISICGGLNIGK---LEEMVGSENKIVWVM----PNTPCLVGEG-SFIYCSNK  131 (262)
T ss_dssp             -HHSGGGCTTCEEEECCSSCCHHH---HHHHHCTTSEEEEEE----CCGGGGGTCE-EEEEEECT
T ss_pred             -HHHHHhcCCCEEEEECCCCCHHH---HHHHhCCCCcEEEEC----CChHHHHcCC-eEEEEeCC
Confidence             66777774445666777788753   44444331  12333    1223333456 66777775

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.70  E-value=3.5e-17  Score=136.66  Aligned_cols=122  Identities=16%  Similarity=0.201  Sum_probs=100.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |||+|||+ |.||..||++|.++||+|++|||++++.+.+.+.|+... ++.++++++|+||+|+|.. .+++++   ++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~-~~~~v~---~~   86 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDN-IIEKVA---ED   86 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHH-HHHHHH---HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCch-HHHHHH---HH
Confidence            58999999 999999999999999999999999999999888786654 6778889999999999874 588888   77


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE-ecCCCCCh------HhhccCc
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSK------QPAETGQ  131 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l-d~pv~g~~------~~a~~g~  131 (226)
                      +.+.++++++|||+|+..+...  +.+ + ..+..|+ +.|+++++      .....|.
T Consensus        87 l~~~l~~~~ivv~~s~~~~~~~--l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~  141 (286)
T 3c24_A           87 IVPRVRPGTIVLILDAAAPYAG--VMP-E-RADITYFIGHPCHPPLFNDETDPAARTDY  141 (286)
T ss_dssp             HGGGSCTTCEEEESCSHHHHHT--CSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCS
T ss_pred             HHHhCCCCCEEEECCCCchhHH--HHh-h-hCCCeEEecCCCCccccccccchhhccCc
Confidence            8788889999999888654332  333 2 3367898 99999988      6566663

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=99.70  E-value=1.7e-18  Score=146.60  Aligned_cols=132  Identities=17%  Similarity=0.239  Sum_probs=108.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CC-eEEEEcCCchhHHHHHHC-C--CcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GF-KVTVWNRTLSKCDELVAH-G--ATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~-~V~~~dr~~~~~~~l~~~-g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|+|||+|.||..++++|.+. |+ +|++|||++++.+++.+. +  +..+.+++++++++|+|++|+|..   +.++ 
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v~-  211 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPIL-  211 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCCB-
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Cccc-
Confidence            5899999999999999999876 76 899999999999998775 5  777889999999999999999862   3444 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe----cCC-CCCh---HhhccCcEEEEeccCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE----APV-SGSK---QPAETGQLVILSAGEKD  141 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld----~pv-~g~~---~~a~~g~~~~~~gg~~~  141 (226)
                        .+  +.+++|++|+++++..|.. +++.+.+.+++..|+|    +|+ +|..   ..+..|++..|++|+..
T Consensus       212 --~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~  280 (312)
T 2i99_A          212 --FG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKP  280 (312)
T ss_dssp             --CG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSC
T ss_pred             --CH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCC
Confidence              21  4678999999999998865 7788888888999999    677 4443   34556788888888754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.67  E-value=3.3e-16  Score=128.06  Aligned_cols=108  Identities=19%  Similarity=0.229  Sum_probs=86.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC----eEEEEcCCchhHHHHHH-CCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      |||+|||+|.||.+|+++|.++||    +|++|||++++.+.+.+ .|+..+.++.++++++|+||+|+|. ..+++++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            589999999999999999999998    99999999999999876 4999999999999999999999965 7888998 


Q ss_pred             cccccccccCCCcEEEec-CCCCHHHHHHHHHHHHhcCCcEE
Q 027255           76 DKGGVLEQICPGKGYIDM-STVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                        +++.+.++++++||.. +++...   .+.+.+. .+..++
T Consensus        81 --~~l~~~l~~~~~vvs~~~gi~~~---~l~~~~~-~~~~~v  116 (247)
T 3gt0_A           81 --NEIKEIIKNDAIIVTIAAGKSIE---STENAFN-KKVKVV  116 (247)
T ss_dssp             -----CCSSCTTCEEEECSCCSCHH---HHHHHHC-SCCEEE
T ss_pred             --HHHHhhcCCCCEEEEecCCCCHH---HHHHHhC-CCCcEE
Confidence              7888888889998854 445544   3444443 244444

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.65  E-value=1.3e-16  Score=133.32  Aligned_cols=119  Identities=13%  Similarity=0.210  Sum_probs=103.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++++.+.     .....+++++++++|+|++++|....++.++.  .+.
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~  195 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMVN--SRL  195 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HHH
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhhh--HHH
Confidence            58999999999999999999999999999999876432     44567999999999999999997777777663  346


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQP  126 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~  126 (226)
                      ++.+++|.++||+++..+...+++.+.+.+.++......|+..++.
T Consensus       196 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  241 (290)
T 3gvx_A          196 LANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE  241 (290)
T ss_dssp             HTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS
T ss_pred             HhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc
Confidence            7889999999999999999999999999998888877788887763

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.65  E-value=3.8e-16  Score=124.54  Aligned_cols=131  Identities=17%  Similarity=0.259  Sum_probs=104.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-C-------CcccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-G-------ATVGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g-------~~~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      |||+||| +|.||+.+++.|.++|++|++|+|++++.+.+.+. +       +. ..++.++++++|+||+|+|. ..++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHH
Confidence            8999999 99999999999999999999999999988877653 3       33 45778888999999999986 5677


Q ss_pred             HHhhcccccccccCCCcEEEecCCC-C-----------HHHHHHHHHHHHhcCCcEEec--CCCCChHhh--ccCcEEEE
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTV-D-----------HETSIKISRAITSKGGHFLEA--PVSGSKQPA--ETGQLVIL  135 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~-~-----------~~~~~~l~~~~~~~g~~~ld~--pv~g~~~~a--~~g~~~~~  135 (226)
                      +++   .++.+.+ ++++++++++. .           |...+++++.+.  +..++++  |+.+.....  ..+.++++
T Consensus        79 ~~~---~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  152 (212)
T 1jay_A           79 DTA---RDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVP  152 (212)
T ss_dssp             HHH---HHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred             HHH---HHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEE
Confidence            777   5666666 58999999983 3           233667777664  5789999  777766655  67788888


Q ss_pred             eccC
Q 027255          136 SAGE  139 (226)
Q Consensus       136 ~gg~  139 (226)
                      ++|+
T Consensus       153 ~~g~  156 (212)
T 1jay_A          153 VCGD  156 (212)
T ss_dssp             EEES
T ss_pred             EECC
Confidence            8886

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.45  E-value=1.3e-17  Score=132.52  Aligned_cols=110  Identities=19%  Similarity=0.292  Sum_probs=85.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|+|||+|.||..||++|.+.|++|++|+|+++ .+.+...|+... ++.++++++|+||+++|. ..+++++    ++
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~-~~~~~v~----~l   92 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHR-EHYDFLA----EL   92 (201)
Confidence            6899999999999999999999999999999987 566666677666 788889999999999997 4677765    23


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      .. +.++++|||+++..|...      +.+.+..+++.|+.+.+
T Consensus        93 ~~-~~~~~ivI~~~~G~~~~~------~~~~~~~~l~~~~~~~~  129 (201)
T 2yjz_A           93 AD-SLKGRVLIDVSNNQKMNQ------YPESNAEYLAQLVPGAH  129 (201)
Confidence            33 447899999999876432      23345566666665543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.64  E-value=2.2e-16  Score=127.05  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=85.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEE-EcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~-~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||+|||+|.||..+|+.|.++|++|++ |||++++.+++.+. |+....+..+.++++|+||+|+|. ..+++++   .
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~---~   99 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIV---T   99 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHH---T
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHH---H
Confidence            6899999999999999999999999999 99999999987654 777766777788999999999986 7788888   6


Q ss_pred             ccccccCCCcEEEecCCCCH------------HHHHHHHHHHH
Q 027255           79 GVLEQICPGKGYIDMSTVDH------------ETSIKISRAIT  109 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~------------~~~~~l~~~~~  109 (226)
                      .+.+ + ++++||++++..+            ...+.+.+.+.
T Consensus       100 ~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~  140 (220)
T 4huj_A          100 QVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP  140 (220)
T ss_dssp             TCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST
T ss_pred             Hhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC
Confidence            6766 5 6899999997542            15566666654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.63  E-value=2.5e-15  Score=125.18  Aligned_cols=129  Identities=19%  Similarity=0.235  Sum_probs=98.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC---eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~---~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||+|||+|+||.+|++.|.++|+   +|++|||++++.+.+.+. |+..+.+..++++++|+||+|+|. +.+++++  
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl--   80 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC--   80 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH--
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH--
Confidence            589999999999999999999999   899999999999999886 999999999999999999999975 7888988  


Q ss_pred             ccccccc-cCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChHhhccCcEEEEeccC
Q 027255           77 KGGVLEQ-ICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        77 ~~~l~~~-l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~~a~~g~~~~~~gg~  139 (226)
                       +++.+. ++++++||+.+...+  ...+.+.+. .+..++-+ |.  .|.....| .+.++.|+
T Consensus        81 -~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~-~~~~vvr~mPn--~p~~v~~g-~~~l~~~~  138 (280)
T 3tri_A           81 -EELKDILSETKILVISLAVGVT--TPLIEKWLG-KASRIVRAMPN--TPSSVRAG-ATGLFANE  138 (280)
T ss_dssp             -HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHT-CCSSEEEEECC--GGGGGTCE-EEEEECCT
T ss_pred             -HHHHhhccCCCeEEEEecCCCC--HHHHHHHcC-CCCeEEEEecC--ChHHhcCc-cEEEEeCC
Confidence             778777 777878887665433  234555553 23444443 32  23333333 34455554

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.63  E-value=1.6e-15  Score=127.47  Aligned_cols=119  Identities=16%  Similarity=0.269  Sum_probs=97.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+||| +|.||..+|+.|.+.|++|++|||+++.             +..++++++|+||+|+|. ..+++++   .+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp~-~~~~~vl---~~   84 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPI-NLTLETI---ER   84 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSCG-GGHHHHH---HH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCCH-HHHHHHH---HH
Confidence            3899999 9999999999999999999999998752             567888999999999988 5588888   77


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChHhhccCcEEEEeccC
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~~a~~g~~~~~~gg~  139 (226)
                      +.+.++++++|+|++++.....+.+.+.+   +..++.+ |++|++.....|..++++.++
T Consensus        85 l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~~v~~hP~~g~~~~~~~g~~~~l~~~~  142 (298)
T 2pv7_A           85 LKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGR  142 (298)
T ss_dssp             HGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEE
T ss_pred             HHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCCEEeeCCCCCCCchhhcCCeEEEecCC
Confidence            87888899999999998887766665542   4678876 998887655567667776553

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.1e-15  Score=132.37  Aligned_cols=133  Identities=12%  Similarity=0.034  Sum_probs=103.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC--------eEEEEcCCchh-----HHHHHHC--------------CCcccCCHHHHh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF--------KVTVWNRTLSK-----CDELVAH--------------GATVGGSPAEVI   54 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~--------~V~~~dr~~~~-----~~~l~~~--------------g~~~~~s~~~~~   54 (226)
                      ||+|||.|.||+++|..|+++||        +|++|.|+++.     .+.+...              ++.+++++.+++
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            89999999999999999999875        59999998763     4444433              245678899999


Q ss_pred             hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC-HHH--HHHHHHHHHh---cCCcEEecCCCCChHhhc
Q 027255           55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HET--SIKISRAITS---KGGHFLEAPVSGSKQPAE  128 (226)
Q Consensus        55 ~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~--~~~l~~~~~~---~g~~~ld~pv~g~~~~a~  128 (226)
                      +++|+||+++|+ +.+++++   +++.+.++++.++|.++..- +.+  .+.+.+.+.+   ..+.+|.+|.+..+...+
T Consensus       116 ~~ad~ii~avPs-~~~r~~l---~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~A~EVa~~  191 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRIC---SQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANIATEVAQE  191 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHHH---HHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCCHHHHHTT
T ss_pred             hcCCEEEEECCh-hhhHHHH---HHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCchHHHhhcC
Confidence            999999999998 7899999   88888898999999998752 111  1223333333   235679999999999988


Q ss_pred             cCcEEEEecc
Q 027255          129 TGQLVILSAG  138 (226)
Q Consensus       129 ~g~~~~~~gg  138 (226)
                      ..+.+++++-
T Consensus       192 ~pta~~iA~~  201 (391)
T 4fgw_A          192 HWSETTVAYH  201 (391)
T ss_dssp             CCEEEEEECC
T ss_pred             CCceEEEEec
Confidence            8888777754

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.61  E-value=6.3e-16  Score=132.44  Aligned_cols=123  Identities=14%  Similarity=0.110  Sum_probs=105.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+.+|++|...|++|++|||++...+.+.+.|+..+.++++++++||+|++++|.....+.++.  .+.
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~  242 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFN--KEL  242 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBS--HHH
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhc--HHH
Confidence            589999999999999999999999999999998777777777888888999999999999999998777777663  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+...+.+.+.+.+..+...--.|+..++
T Consensus       243 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP  287 (351)
T 3jtm_A          243 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQP  287 (351)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred             HhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCC
Confidence            678999999999999999999999999988776644445565544

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.60  E-value=7.1e-15  Score=122.57  Aligned_cols=132  Identities=15%  Similarity=0.173  Sum_probs=94.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----------C--------------CcccCCHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----------G--------------ATVGGSPAEVIK   55 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----------g--------------~~~~~s~~~~~~   55 (226)
                      +||+|||+|.||..||..|+++|++|++|||++++++.+.+.           |              +..+.++.++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            379999999999999999999999999999999988776543           2              466788999999


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEE
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVIL  135 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~  135 (226)
                      ++|+||+++|.+..+...++  .++.+.+++++++++.++..+.  .++++.+.. ..+++....+.   .+..+.++.+
T Consensus        85 ~aDlVi~av~~~~~~~~~v~--~~l~~~~~~~~il~s~tS~~~~--~~la~~~~~-~~~~ig~h~~~---p~~~~~lvev  156 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIY--TKLGELAPAKTIFATNSSTLLP--SDLVGYTGR-GDKFLALHFAN---HVWVNNTAEV  156 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCH--HHHHHHHSC-GGGEEEEEECS---STTTSCEEEE
T ss_pred             cCCEEEEeccCcHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CcceEEEccCC---CcccCceEEE
Confidence            99999999998654444333  5677788899999965544332  344554432 22333332221   1235667777


Q ss_pred             eccCC
Q 027255          136 SAGEK  140 (226)
Q Consensus       136 ~gg~~  140 (226)
                      +.|+.
T Consensus       157 v~~~~  161 (283)
T 4e12_A          157 MGTTK  161 (283)
T ss_dssp             EECTT
T ss_pred             EeCCC
Confidence            87753

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.60  E-value=1.1e-15  Score=131.07  Aligned_cols=122  Identities=17%  Similarity=0.211  Sum_probs=102.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|+++...|++|++|||++. .+.....|+..+.+++++++++|+|++++|.....+.++.  .+.
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~--~~~  237 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIIT--VAD  237 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhC--HHH
Confidence            5899999999999999999999999999999863 3556677888888999999999999999998777777662  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+...+.+.+.+++..+....-.|+..++
T Consensus       238 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP  282 (352)
T 3gg9_A          238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP  282 (352)
T ss_dssp             HTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSC
T ss_pred             HhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCC
Confidence            788999999999999999999999999999877654444555443

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.60  E-value=2.5e-15  Score=128.20  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=78.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+.+|+++...|++|++|||++++     ..+.....++++++++||+|++++|.....+.++.  .+.
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~--~~~  244 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVD--ASL  244 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTCSEEEECC----------C--HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhh--HHH
Confidence            58999999999999999999999999999999875     23556678999999999999999998788888773  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.++++.++||+++..+...+.+.+.+++..+...--.|+..++
T Consensus       245 l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP  289 (340)
T 4dgs_A          245 LQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEP  289 (340)
T ss_dssp             HHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSS
T ss_pred             HhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCC
Confidence            778999999999999999999999999988766654445665554

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.60  E-value=1.6e-15  Score=129.20  Aligned_cols=111  Identities=18%  Similarity=0.206  Sum_probs=95.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+.+|+.|...|++|++|||++++.+.+.+.|+..+ +++++++++|+|++++|.+..++.++.  .++
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~--~~~  232 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCN--KDF  232 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBS--HHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhC--HHH
Confidence            58999999999999999999999999999999887777766677766 899999999999999998766666662  245


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ++.++++.++||+++..+.....+.+.+.+.++.
T Consensus       233 ~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~  266 (330)
T 2gcg_A          233 FQKMKETAVFINISRGDVVNQDDLYQALASGKIA  266 (330)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             HhcCCCCcEEEECCCCcccCHHHHHHHHHcCCcc
Confidence            6778899999999999888888899999886554

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.59  E-value=2.7e-15  Score=121.92  Aligned_cols=117  Identities=17%  Similarity=0.272  Sum_probs=95.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeE-EEEcCCchhHHHHHHCCCcccCCHHHHh-hhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||||||+|.||+.|+++|.+.|++| .+||+++ +.++       .+.++++++ .++|+|++|+|+..+.+.+.    
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~----   68 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKDYAE----   68 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHHHHH----
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHHHHH----
Confidence            89999999999999999999999997 6999985 3221       678899998 68999999999865554443    


Q ss_pred             ccccccCCCcEEEecCCCCH---HHHHHHHHHHHhcCCc-EEecCCCCChHhhccCcE
Q 027255           79 GVLEQICPGKGYIDMSTVDH---ETSIKISRAITSKGGH-FLEAPVSGSKQPAETGQL  132 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~---~~~~~l~~~~~~~g~~-~ld~pv~g~~~~a~~g~~  132 (226)
                         ..+++|+.+|+.++..+   +..+++.+.++++|.. ++++|++|+...+..+.+
T Consensus        69 ---~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~  123 (236)
T 2dc1_A           69 ---KILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE  123 (236)
T ss_dssp             ---HHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG
T ss_pred             ---HHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc
Confidence               45678999999998653   3337888888888987 799999999988877764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.59  E-value=1.8e-15  Score=129.72  Aligned_cols=122  Identities=15%  Similarity=0.123  Sum_probs=100.4

Q ss_pred             CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|||||+|.||+.+|+.+. ..|++|++|||++++.+...+.|+..+.+++++++++|+|++++|....++.++.  .+
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~--~~  241 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLID--EA  241 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBC--HH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhh--HH
Confidence            58999999999999999999 9999999999998877666666877777899999999999999998777777662  24


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      +++.++++.++||+++..+...+.+.+.+.+..+...-..|+..+
T Consensus       242 ~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E  286 (348)
T 2w2k_A          242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE  286 (348)
T ss_dssp             HHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTT
T ss_pred             HHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCC
Confidence            567789999999999998888889999998755443333455544

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.59  E-value=3.9e-16  Score=129.76  Aligned_cols=128  Identities=12%  Similarity=0.179  Sum_probs=86.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeE-EEEcCCchhHHHHHH-CCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V-~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||+|||+|.||..|++.|.++ ++| .+|||++++.+++.+ .|. .+.+++++++++|+||+|+|+. ..++++   .
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~-~~~~v~---~   76 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDR-YIKTVA---N   76 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTT-THHHHH---T
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChH-HHHHHH---H
Confidence            6899999999999999999988 999 599999999988865 476 6777888888999999999985 577887   5


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhc-cCcEEEEeccCCC
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAE-TGQLVILSAGEKD  141 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~-~g~~~~~~gg~~~  141 (226)
                      ++.   .++++||++|+..+....  .+.  ..+..+...|+++++.... ...+.+++++++.
T Consensus        77 ~l~---~~~~ivi~~s~~~~~~~l--~~~--~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~  133 (276)
T 2i76_A           77 HLN---LGDAVLVHCSGFLSSEIF--KKS--GRASIHPNFSFSSLEKALEMKDQIVFGLEGDER  133 (276)
T ss_dssp             TTC---CSSCCEEECCSSSCGGGG--CSS--SEEEEEECSCC--CTTGGGCGGGCCEEECCCTT
T ss_pred             Hhc---cCCCEEEECCCCCcHHHH--HHh--hccccchhhhcCCCchhHHHhCCCeEEEEeChH
Confidence            554   578999999876544321  111  1122345567777665544 4566677777653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.59  E-value=3e-15  Score=127.75  Aligned_cols=120  Identities=12%  Similarity=0.122  Sum_probs=97.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+.+|+.|...|++|++|||++++ +.....|+.. .+++++++++|+|++++|....++.++.  .++
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~--~~~  226 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLIN--EER  226 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhC--HHH
Confidence            58999999999999999999999999999999887 5555567765 5899999999999999999776766662  245


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      ++.++++.++||+++..+.....+.+.+.+..+.....-|++.+
T Consensus       227 ~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~E  270 (334)
T 2dbq_A          227 LKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE  270 (334)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             HhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCC
Confidence            67788999999999998888888999998866654323355544

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.58  E-value=2e-15  Score=129.29  Aligned_cols=121  Identities=15%  Similarity=0.128  Sum_probs=98.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++++. .....|+..+.+++++++++|+|++++|.....+.++.  .+.
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  245 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN--DFT  245 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH--HHH
Confidence            589999999999999999999999999999987653 22445777777899999999999999998777777663  245


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      ++.++++.++||+++..+...+++.+.+.+.++....--|+..+
T Consensus       246 l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E  289 (347)
T 1mx3_A          246 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESE  289 (347)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred             HhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccC
Confidence            67889999999999999999999999999877664333344443

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.58  E-value=1.5e-15  Score=135.29  Aligned_cols=124  Identities=20%  Similarity=0.304  Sum_probs=93.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhhC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC   57 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~a   57 (226)
                      ||+|||+|.||.+||.+|+++|++|++||+++++++++.+           .|             ++.+++++ .+++|
T Consensus         7 kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a   85 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAAA   85 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGGC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcCC
Confidence            7999999999999999999999999999999999887653           23             23456664 67899


Q ss_pred             CeEEEecCCHHHHHHHhhcccccccccCCCcEEE-ecCCCCHHHHHHHHHHHHh----cCCcEEe-cCCCCChHhhccCc
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAITS----KGGHFLE-APVSGSKQPAETGQ  131 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv-d~st~~~~~~~~l~~~~~~----~g~~~ld-~pv~g~~~~a~~g~  131 (226)
                      |+||+|+|.+..++..++  .++.+.++++++++ ++||+++.   ++++.+..    .|.+|++ +|++         .
T Consensus        86 DlVIeAVpe~~~vk~~v~--~~l~~~~~~~~IlasntSti~i~---~ia~~~~~p~~~ig~hf~~Pa~v~---------~  151 (483)
T 3mog_A           86 DLVIEAASERLEVKKALF--AQLAEVCPPQTLLTTNTSSISIT---AIAAEIKNPERVAGLHFFNPAPVM---------K  151 (483)
T ss_dssp             SEEEECCCCCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH---HHTTTSSSGGGEEEEEECSSTTTC---------C
T ss_pred             CEEEEcCCCcHHHHHHHH--HHHHHhhccCcEEEecCCCCCHH---HHHHHccCccceEEeeecChhhhC---------C
Confidence            999999999776654443  55777888999984 68888775   33333321    2566666 4544         6


Q ss_pred             EEEEeccCC
Q 027255          132 LVILSAGEK  140 (226)
Q Consensus       132 ~~~~~gg~~  140 (226)
                      ++.+++|+.
T Consensus       152 Lvevv~g~~  160 (483)
T 3mog_A          152 LVEVVSGLA  160 (483)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEecCCC
Confidence            788888864

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.58  E-value=3.2e-15  Score=127.75  Aligned_cols=121  Identities=18%  Similarity=0.148  Sum_probs=100.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++...+...  |+..+.++++++++||+|++++|.....+.++.  .+.
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~--~~~  249 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLD--HDR  249 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBC--HHH
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhC--HHH
Confidence            5899999999999999999999999999999876544332  777778999999999999999998777777662  346


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++......+.+.+.+.+..+...--.|+..++
T Consensus       250 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP  294 (345)
T 4g2n_A          250 IAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP  294 (345)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             HhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence            678999999999999999999999999988766544445666655

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.58  E-value=3.9e-15  Score=126.31  Aligned_cols=121  Identities=11%  Similarity=0.102  Sum_probs=97.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcC-CchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|||||+|.||+.+|++|...|++|++||| ++++ +...+.|+..+.+++++++++|+|++++|....++.++.  .+
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~--~~  223 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN--KA  223 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcC--HH
Confidence            5799999999999999999999999999999 8876 344556887766899999999999999998766776662  23


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      .++.++++.++||+++..+.....+.+.+.+..+.-..--|+..+
T Consensus       224 ~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~e  268 (320)
T 1gdh_A          224 TIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE  268 (320)
T ss_dssp             HHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred             HHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            567889999999999988878888899888765543222244443

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.57  E-value=1.7e-15  Score=128.92  Aligned_cols=121  Identities=18%  Similarity=0.149  Sum_probs=100.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++.+.+.....|+... +++++++++|+|++++|.....+.++.  .+.
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  222 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVN--AEL  222 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHhC--HHH
Confidence            58999999999999999999999999999999866555556676544 899999999999999998777777662  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      ++.+++|.++||+++..+.....+.+.+.+..+...---|+..+
T Consensus       223 l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E  266 (330)
T 4e5n_A          223 LALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEME  266 (330)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred             HhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence            78899999999999999999999999999887764444455544

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.57  E-value=1.5e-15  Score=128.82  Aligned_cols=121  Identities=12%  Similarity=0.101  Sum_probs=98.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++...+.+  .+.....++++++++||+|++++|.....+.++.  .+.
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~  216 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--DQVYQLPALNKMLAQADVIVSVLPATRETHHLFT--ASR  216 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--SEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBC--TTT
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--hcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH--HHH
Confidence            589999999999999999999999999999988543322  1122356899999999999999998777777763  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+...+.+.+.+.+..+...--.|+..++
T Consensus       217 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP  261 (324)
T 3hg7_A          217 FEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEP  261 (324)
T ss_dssp             TTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSS
T ss_pred             HhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCC
Confidence            788999999999999999999999999988877544444665554

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.57  E-value=1.1e-15  Score=129.77  Aligned_cols=121  Identities=12%  Similarity=0.118  Sum_probs=100.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||+++..+.+..  .....++++++++||+|++++|.....+.++.  .+.
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~--~~~  213 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLFS--TEL  213 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS--HHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhcC--HHH
Confidence            57999999999999999999999999999999876433221  12346789999999999999998777777763  346


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+...+.+.+.+.+..+....-.|+..++
T Consensus       214 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP  258 (324)
T 3evt_A          214 FQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP  258 (324)
T ss_dssp             HHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSS
T ss_pred             HhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCC
Confidence            678999999999999999999999999988877766666776654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.57  E-value=5.5e-15  Score=124.67  Aligned_cols=121  Identities=9%  Similarity=0.062  Sum_probs=98.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++++ +...+.|+... +++++++++|+|++++|.....+.++.  .+.
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~~li~--~~~  218 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLIN--EER  218 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHhhhcC--HHH
Confidence            58999999999999999999999999999999887 55566787654 899999999999999998776776652  245


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.++++.++||+++..+.....+.+.+.+..+....--|+..++
T Consensus       219 l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP  263 (307)
T 1wwk_A          219 LKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEP  263 (307)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred             HhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            678899999999999988888889999988766532222454443

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.57  E-value=6.3e-15  Score=130.11  Aligned_cols=125  Identities=18%  Similarity=0.278  Sum_probs=89.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHH--------HHHHCCC-------------cccCCHHHHhhhCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD--------ELVAHGA-------------TVGGSPAEVIKKCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~--------~l~~~g~-------------~~~~s~~~~~~~adv   59 (226)
                      +||+|||+|.||.+||.+|+++|++|++||+++++..        ++.+.|.             +.+++++ .+++||+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl  133 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL  133 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence            5899999999999999999999999999999998432        3334442             3567775 6889999


Q ss_pred             EEEecCCHHHHHHHhhcccccccccCCCcEEEec-CCCCHHHHHHHHHHHHh----cCCcEEecCCCCChHhhccCcEEE
Q 027255           60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDM-STVDHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQLVI  134 (226)
Q Consensus        60 vi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~----~g~~~ld~pv~g~~~~a~~g~~~~  134 (226)
                      ||+|+|.+..++..++  .++.+.++++++|++. ||..+.   ++++.+..    .|.+|++ |+.       ...++.
T Consensus       134 VIeAVpe~~~vk~~v~--~~l~~~~~~~aIlasnTSsl~i~---~ia~~~~~p~r~iG~Hffn-Pv~-------~m~LvE  200 (460)
T 3k6j_A          134 IVESVIEDMKLKKELF--ANLENICKSTCIFGTNTSSLDLN---EISSVLRDPSNLVGIHFFN-PAN-------VIRLVE  200 (460)
T ss_dssp             EEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH---HHHTTSSSGGGEEEEECCS-STT-------TCCEEE
T ss_pred             EEEcCCCCHHHHHHHH--HHHHhhCCCCCEEEecCCChhHH---HHHHhccCCcceEEEEecc-hhh-------hCCEEE
Confidence            9999998776665554  5677888899999764 555543   34444321    2566666 443       234556


Q ss_pred             EeccC
Q 027255          135 LSAGE  139 (226)
Q Consensus       135 ~~gg~  139 (226)
                      ++.|.
T Consensus       201 Iv~g~  205 (460)
T 3k6j_A          201 IIYGS  205 (460)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            66664

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.56  E-value=3.9e-15  Score=129.18  Aligned_cols=122  Identities=13%  Similarity=0.031  Sum_probs=100.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++.+.+.....|+..+.+++++++++|+|++++|.....+.++.  ...
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~  269 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN--DET  269 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBS--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhh--HHH
Confidence            589999999999999999999999999999998766666666887777899999999999999998777777662  245


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      ++.++++.++||+++..+...+.+.+.+.+..+...---|+..+
T Consensus       270 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~E  313 (393)
T 2nac_A          270 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQ  313 (393)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSS
T ss_pred             HhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCC
Confidence            67889999999999998888889999998765543222345443

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.56  E-value=3.4e-15  Score=127.15  Aligned_cols=118  Identities=16%  Similarity=0.160  Sum_probs=96.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+.+|+.|...|++|++|||++++.+     |.....+++++++++|+|++++|....++.++.  .+.
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~--~~~  237 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPETTHIIN--REV  237 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBC--HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChHHHHHhh--HHH
Confidence            5799999999999999999999999999999987542     666677899999999999999998777777662  235


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.++++.++||+++..+...+.+.+.+.+..+...---|+..++
T Consensus       238 l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP  282 (333)
T 3ba1_A          238 IDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP  282 (333)
T ss_dssp             HHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTT
T ss_pred             HhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCC
Confidence            677889999999999998888999999988766533333454443

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.56  E-value=4.3e-15  Score=125.67  Aligned_cols=110  Identities=14%  Similarity=0.083  Sum_probs=93.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++++. ...+.|+.. .+++++++++|+|++++|....++.++.  ++.
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~--~~~  218 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPIID--YPQ  218 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhC--HHH
Confidence            589999999999999999999999999999998874 455667765 4899999999999999998776666652  235


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ++.++++.++||+++..+.....+.+.+++.++.
T Consensus       219 l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~  252 (313)
T 2ekl_A          219 FELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVY  252 (313)
T ss_dssp             HHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEE
T ss_pred             HhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCc
Confidence            5778999999999999888889999999876654

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.56  E-value=7.6e-15  Score=125.09  Aligned_cols=119  Identities=16%  Similarity=0.194  Sum_probs=98.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++++ +.....|+.. .+++++++++|+|++++|.....+.++.  .+.
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  241 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLN--DNT  241 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBC--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhC--HHH
Confidence            58999999999999999999999999999998876 3455667764 4899999999999999999877777662  246


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc--EEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH--FLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~--~ld~pv~g~~~  125 (226)
                      ++.++++.++||+++..+.....+.+.+.+..+.  .+|  |+..++
T Consensus       242 l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lD--V~~~EP  286 (335)
T 2g76_A          242 FAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALD--VFTEEP  286 (335)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEES--CCSSSS
T ss_pred             HhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEe--ecCCCC
Confidence            7889999999999999888888999999887654  455  555544

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.55  E-value=2.3e-15  Score=120.22  Aligned_cols=92  Identities=22%  Similarity=0.289  Sum_probs=74.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|+|||+|.||+.+|..|.++|++|++|||+++                  +++++|+||+|+| +..+++++   +++
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~---~~l   77 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALA---KQY   77 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHH---HHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHH---HHH
Confidence            6899999999999999999999999999999876                  4568999999999 57888888   667


Q ss_pred             ccccCCCcEEEecCCCCH--H-------H----HHHHHHHHHhcCCcEEe
Q 027255           81 LEQICPGKGYIDMSTVDH--E-------T----SIKISRAITSKGGHFLE  117 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~--~-------~----~~~l~~~~~~~g~~~ld  117 (226)
                      .+.++ ++++|++++..+  .       .    .+.+.+.+.  +..+++
T Consensus        78 ~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~  124 (209)
T 2raf_A           78 ATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLK  124 (209)
T ss_dssp             HHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEE
T ss_pred             HHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEE
Confidence            77776 999999988432  1       1    455555443  567887

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.55  E-value=6.6e-16  Score=130.13  Aligned_cols=127  Identities=15%  Similarity=0.154  Sum_probs=96.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-----C-CeEEEEcCCchhHHHHHH-CCCcccC-------------CHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-----G-FKVTVWNRTLSKCDELVA-HGATVGG-------------SPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-----G-~~V~~~dr~~~~~~~l~~-~g~~~~~-------------s~~~~~~~advv   60 (226)
                      |||+|||+|.||..||.+|.++     | |+|++|+| +++.+.+.+ .|+....             +..+.++.+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            6899999999999999999999     9 99999999 888999988 7765543             444567889999


Q ss_pred             EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHh----cCCcEEecCCCCC--hHhhccCcEE
Q 027255           61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS----KGGHFLEAPVSGS--KQPAETGQLV  133 (226)
Q Consensus        61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~----~g~~~ld~pv~g~--~~~a~~g~~~  133 (226)
                      |+|+|.. .+++++   +++.+.+.++++||++++. +...+.+.+.+.+    .|+.++++++.++  ......|.+.
T Consensus        88 il~vk~~-~~~~v~---~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~  161 (317)
T 2qyt_A           88 LFCTKDY-DMERGV---AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELF  161 (317)
T ss_dssp             EECCSSS-CHHHHH---HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEecCcc-cHHHHH---HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceE
Confidence            9999984 578888   6777778788999998764 3333455555544    3556788888753  2334455543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.55  E-value=6.3e-15  Score=127.00  Aligned_cols=112  Identities=13%  Similarity=0.083  Sum_probs=97.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|||||+|.||+.+|++|...|++ |++|||++.+.+...+.|+..+.+++++++++|+|++++|.....+.++.  ..
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~  242 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLIN--KE  242 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBC--HH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhC--HH
Confidence            5899999999999999999999997 99999998777766777877777899999999999999999777777662  24


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      .++.++++.++||+++..+...+.+.+.+.+..+.
T Consensus       243 ~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~  277 (364)
T 2j6i_A          243 LLSKFKKGAWLVNTARGAICVAEDVAAALESGQLR  277 (364)
T ss_dssp             HHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCc
Confidence            56788999999999999888889999999887654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.54  E-value=7e-15  Score=125.38  Aligned_cols=119  Identities=19%  Similarity=0.215  Sum_probs=95.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+.+|+.|...|++|++|||++++ +...+.|+... +++++++++|+|++++|....++.++.  ..+
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~--~~~  222 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIIN--EER  222 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBC--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhC--HHH
Confidence            58999999999999999999999999999999886 44455576554 889999999999999999767777762  235


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      ++.++++ ++||+++..+....++.+.+.+..+...-.-+++.+
T Consensus       223 ~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E  265 (333)
T 2d0i_A          223 VKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKE  265 (333)
T ss_dssp             HHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSS
T ss_pred             HhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCC
Confidence            6778899 999999998888888888888765544333445433

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.53  E-value=1.1e-14  Score=122.67  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=91.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||+++  +.    +.....+++++++++|+|++++|.....+.++.  .+.
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~--~~~  196 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVK--YQH  196 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhC--HHH
Confidence            5899999999999999999999999999999886  11    445567899999999999999999877777772  256


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcE
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~  115 (226)
                      ++.+++|.++||+++..+.....+.+.+.+..+..
T Consensus       197 l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~g  231 (303)
T 1qp8_A          197 LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFI  231 (303)
T ss_dssp             HTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCE
T ss_pred             HhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceE
Confidence            78899999999999998888889999998876544

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.53  E-value=1.3e-14  Score=123.95  Aligned_cols=119  Identities=13%  Similarity=0.083  Sum_probs=97.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|+++...|++|++|||+++..   .+.+... .++++++++||+|++++|.....+.++.  .+.
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~  222 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPLFPSTENMIG--EKQ  222 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhh--HHH
Confidence            579999999999999999999999999999998651   1223333 4899999999999999998777777663  346


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+...+.+.+.+.+..+...---|+..++
T Consensus       223 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  267 (343)
T 2yq5_A          223 LKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES  267 (343)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred             HhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence            678999999999999999999999999988876544445666655

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.53  E-value=1.4e-14  Score=130.68  Aligned_cols=122  Identities=16%  Similarity=0.179  Sum_probs=99.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+.+|++|...|++|++|||++.. +...+.|+..+ ++++++++||+|++|+|....++.++.  .++
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~--~~~  218 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLID--KEA  218 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhC--HHH
Confidence            58999999999999999999999999999998753 44556687765 899999999999999999767887772  136


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQP  126 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~  126 (226)
                      ++.++++.++||+++..+....++.+.+.+..+......|++++|.
T Consensus       219 ~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~  264 (529)
T 1ygy_A          219 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC  264 (529)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC
T ss_pred             HhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC
Confidence            6789999999999999888888899998876555333346666553

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.52  E-value=4.2e-14  Score=118.84  Aligned_cols=97  Identities=12%  Similarity=0.167  Sum_probs=75.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC------------------CcccCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG------------------ATVGGSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g------------------~~~~~s~~   51 (226)
                      +||+|||+|.||.+||..|+++||+|++|||++++++.+.           +.|                  +..+.+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            4799999999999999999999999999999999877542           223                  34567888


Q ss_pred             HHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecC-CCCHH
Q 027255           52 EVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMS-TVDHE   99 (226)
Q Consensus        52 ~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~s-t~~~~   99 (226)
                      +++++||+||+|+|.+..++..++  .++.+.++++++|++.+ +..+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~--~~l~~~~~~~~iv~s~ts~i~~~  142 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQIT  142 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCHH
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH
Confidence            899999999999998665543332  55667788889888654 45544

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.52  E-value=7.6e-14  Score=118.97  Aligned_cols=90  Identities=20%  Similarity=0.261  Sum_probs=77.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------------cCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------------GGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------------~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.||..+|..|+++|++|++|+|+ ++.+.+.+.|...             +.++++ ++.+|+||+|+|. 
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            68999999999999999999999999999996 6778888777532             456666 5789999999988 


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .++++++   +.+.+.+.++++||.+.+.
T Consensus        81 ~~~~~~~---~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 PALESVA---AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             HHHHHHH---GGGSSSCCTTCEEEECCSS
T ss_pred             hhHHHHH---HHHHhhCCCCCEEEEECCC
Confidence            6788988   7888889899999998776

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.52  E-value=2e-14  Score=123.51  Aligned_cols=120  Identities=19%  Similarity=0.204  Sum_probs=96.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|+++...|++|++|||++. .+.....|+.. .+++++++++|+|++++|.....+.++.  .+.
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~--~~~  252 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLG--AEA  252 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCC--HHH
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcC--HHH
Confidence            4799999999999999999999999999999863 34555667764 5899999999999999998878877773  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+-....+.+.+++..+. .---|+..++
T Consensus       253 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EP  296 (365)
T 4hy3_A          253 FSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEP  296 (365)
T ss_dssp             HHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSS
T ss_pred             HhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCC
Confidence            7889999999999999999999999999887665 3334555443

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.52  E-value=2.9e-15  Score=126.64  Aligned_cols=121  Identities=17%  Similarity=0.283  Sum_probs=96.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |+|||||+|.||+.+|++|...|++|++|||+++..+.+...  ....+++++++++|+|++++|.....+.++.  .+.
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li~--~~~  215 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGIIN--SEL  215 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCBS--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhcc--HHH
Confidence            589999999999999999999999999999998754322111  1125788999999999999998777777762  346


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++......+.+.+.+.+..+...--.|+..++
T Consensus       216 l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP  260 (315)
T 3pp8_A          216 LDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP  260 (315)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred             HhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCC
Confidence            678999999999999999999999999988766644444555544

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.51  E-value=1.3e-14  Score=125.17  Aligned_cols=118  Identities=10%  Similarity=0.093  Sum_probs=96.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHH----HHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA----ALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~----~~~v~~~   76 (226)
                      ++|||||+|.||+.+|++|...|++|++|||+.+..+     ......++++++++||+|++++|....    .+.++. 
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~-  193 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD-  193 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC-
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcC-
Confidence            5899999999999999999999999999998644321     233467899999999999999997666    666662 


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                       .+.++.+++|.++||+++..+...+.+.+.+.+..+....-.|+..++
T Consensus       194 -~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP  241 (381)
T 3oet_A          194 -ETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP  241 (381)
T ss_dssp             -HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred             -HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCC
Confidence             346678999999999999999999999999998877655555555544

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.51  E-value=1.1e-13  Score=117.13  Aligned_cols=100  Identities=13%  Similarity=0.210  Sum_probs=81.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-------------ccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-------------VGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.||+.+|..|+++|++|++| +++++.+.+.+.|..             .+.++++ ++.+|+||+|+|..
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavk~~   97 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCVKST   97 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECCCGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEcccc
Confidence            68999999999999999999999999999 999999998876532             3455544 57899999999884


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHH
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAI  108 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~  108 (226)
                       ++++++   +.+.+.+.++++||.+++. .+.  +.+.+.+
T Consensus        98 -~~~~~l---~~l~~~l~~~~~iv~~~nGi~~~--~~l~~~~  133 (318)
T 3hwr_A           98 -DTQSAA---LAMKPALAKSALVLSLQNGVENA--DTLRSLL  133 (318)
T ss_dssp             -GHHHHH---HHHTTTSCTTCEEEEECSSSSHH--HHHHHHC
T ss_pred             -cHHHHH---HHHHHhcCCCCEEEEeCCCCCcH--HHHHHHc
Confidence             788888   7888888899999988775 443  3555555

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.50  E-value=4.1e-14  Score=120.60  Aligned_cols=119  Identities=14%  Similarity=0.094  Sum_probs=96.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|+++...|++|++|||++++.  +.+ .+....+++++++++|+|++++|.....+.++.  ...
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~--~~~  221 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMIN--DES  221 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBS--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHh--HHH
Confidence            579999999999999999999999999999998764  222 355555899999999999999998777777662  245


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      ++.++++.++||+++..+...+.+.+.+++..+...---|+..+
T Consensus       222 l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~E  265 (333)
T 1j4a_A          222 IAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE  265 (333)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred             HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCC
Confidence            67789999999999999889999999999876653333344443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.50  E-value=9e-14  Score=118.74  Aligned_cols=91  Identities=21%  Similarity=0.215  Sum_probs=78.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG-   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~-   78 (226)
                      |+|+|||+|.||..+|++|.+.|++|++|+|++++ .+...+.|+..+ ++.++++++|+||+|+|.. ...+++   . 
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~-~~~~v~---~~   91 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDE-FQGRLY---KE   91 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHH-HHHHHH---HH
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcH-HHHHHH---HH
Confidence            68999999999999999999999999999999876 556666788766 8889999999999999884 557787   6 


Q ss_pred             ccccccCCCcEEEecCCC
Q 027255           79 GVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~   96 (226)
                      ++.+.++++++|++++++
T Consensus        92 ~i~~~l~~~~ivi~~~gv  109 (338)
T 1np3_A           92 EIEPNLKKGATLAFAHGF  109 (338)
T ss_dssp             HTGGGCCTTCEEEESCCH
T ss_pred             HHHhhCCCCCEEEEcCCc
Confidence            777888899999998653

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.50  E-value=3e-14  Score=120.36  Aligned_cols=114  Identities=15%  Similarity=0.113  Sum_probs=92.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|++|...|++|++|||++++.+      + ...+++++++++|+|++++|.....+.++.  .+.
T Consensus       145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~--~~~  215 (311)
T 2cuk_A          145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLN--RER  215 (311)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcC--HHH
Confidence            5799999999999999999999999999999987653      2 256899999999999999999777777662  145


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      ++.++++.++||+++..+.....+.+.++ ..+....--|++.+
T Consensus       216 l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~e  258 (311)
T 2cuk_A          216 LFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPE  258 (311)
T ss_dssp             HTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSS
T ss_pred             HhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCC
Confidence            67889999999999998888888999887 65543222345443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.50  E-value=2.1e-14  Score=125.09  Aligned_cols=119  Identities=11%  Similarity=0.087  Sum_probs=93.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|+++...|++|++||+++...    ..++....++++++++||+|++++|.....+.++.  .+.
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~--~~~  230 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLIT--EAK  230 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC-----CCBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcC--HHH
Confidence            579999999999999999999999999999986432    12445678999999999999999999888887763  346


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+...+++.+.+++..+...--.|+..++
T Consensus       231 l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP  275 (416)
T 3k5p_A          231 LRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEP  275 (416)
T ss_dssp             HHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCC
T ss_pred             HhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCC
Confidence            678999999999999999999999999988766544444555543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.49  E-value=4.6e-14  Score=113.07  Aligned_cols=93  Identities=24%  Similarity=0.346  Sum_probs=79.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||+.+++.|.+.|++|++|||++++.+.+.+.|+... +..++++++|+||+|+|. ..+++++   + +
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~---~-l  102 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLC---S-L  102 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGG---G-G
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHH---H-H
Confidence            68999999999999999999999999999999999988877787765 788889999999999986 5666665   3 4


Q ss_pred             ccccCCCcEEEecCCCCHHH
Q 027255           81 LEQICPGKGYIDMSTVDHET  100 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~  100 (226)
                      .+.+ ++++||++++..+..
T Consensus       103 ~~~~-~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          103 SDQL-AGKILVDVSNPTEQE  121 (215)
T ss_dssp             HHHH-TTCEEEECCCCCHHH
T ss_pred             HHhc-CCCEEEEeCCCcccc
Confidence            4455 899999999987654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.49  E-value=2.9e-13  Score=114.22  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc--------------ccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT--------------VGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||+.+|..|.++|++|++|+|++  .+.+.+.|..              ++.++++ ++.+|+||+++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~   79 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT   79 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence            689999999999999999999999999999986  3777776642              2345544 6789999999987


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecCCCC-HHHHHHHHHHHHh
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITS  110 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~  110 (226)
                       .++++++   +.+.+.+.++++||.+.+.- +.  +.+.+.+.+
T Consensus        80 -~~~~~~l---~~l~~~l~~~~~iv~l~nGi~~~--~~l~~~~~~  118 (312)
T 3hn2_A           80 -FANSRYE---ELIRPLVEEGTQILTLQNGLGNE--EALATLFGA  118 (312)
T ss_dssp             -GGGGGHH---HHHGGGCCTTCEEEECCSSSSHH--HHHHHHTCG
T ss_pred             -CCcHHHH---HHHHhhcCCCCEEEEecCCCCcH--HHHHHHCCC
Confidence             5677888   77888888899999887753 33  345555543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.49  E-value=2.5e-14  Score=124.74  Aligned_cols=117  Identities=14%  Similarity=0.140  Sum_probs=94.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|+++...|++|++|||++...    ..++..+.++++++++||+|++++|..+..+.++.  .+.
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  219 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG--AKE  219 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC--HHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhh--HHH
Confidence            589999999999999999999999999999987542    12356667999999999999999999888887763  346


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc--EEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH--FLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~--~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+...+.+.+.+++..+.  .+|  |+..+|
T Consensus       220 l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lD--Vf~~EP  264 (404)
T 1sc6_A          220 ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAID--VFPTEP  264 (404)
T ss_dssp             HHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEE--C-----
T ss_pred             HhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEe--ecCCCC
Confidence            6789999999999999998889999999876554  466  554444

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.48  E-value=3.2e-14  Score=132.42  Aligned_cols=125  Identities=20%  Similarity=0.240  Sum_probs=89.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~~~~~~   56 (226)
                      |||+|||+|.||.+||.+|+++||+|++||+++++++..           .+.|             ++.++++ +++++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  393 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN  393 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence            579999999999999999999999999999999987763           2334             3456677 67899


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEec-CCCCHHHHHHHHHHHHh----cCCcEEecCCCCChHhhccCc
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDM-STVDHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQ  131 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~----~g~~~ld~pv~g~~~~a~~g~  131 (226)
                      ||+||+|+|++..++..++  .++.+.++++++|++. |+..+.   ++++.+..    .|.+|++ |+..       +.
T Consensus       394 aDlVIeaV~e~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~---~la~~~~~~~~~ig~hf~~-P~~~-------~~  460 (715)
T 1wdk_A          394 VDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISIS---LLAKALKRPENFVGMHFFN-PVHM-------MP  460 (715)
T ss_dssp             CSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH---HHGGGCSCGGGEEEEECCS-STTT-------CC
T ss_pred             CCEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCCCHH---HHHHHhcCccceEEEEccC-Cccc-------Cc
Confidence            9999999998777766554  4577788889998864 455554   34443321    2555655 4432       34


Q ss_pred             EEEEeccC
Q 027255          132 LVILSAGE  139 (226)
Q Consensus       132 ~~~~~gg~  139 (226)
                      ++.++.|+
T Consensus       461 lvevv~g~  468 (715)
T 1wdk_A          461 LVEVIRGE  468 (715)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEECC
Confidence            55555554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.48  E-value=4.7e-14  Score=125.32  Aligned_cols=115  Identities=21%  Similarity=0.335  Sum_probs=83.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------CC-----------CcccCCHHHHhhhCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-----------ATVGGSPAEVIKKCT   58 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-----------~~~~~s~~~~~~~ad   58 (226)
                      |+|+|||+|.||..||.+|+++||+|++||+++++++...+           .|           ..++.++ +.+++||
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~aD  116 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD  116 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCCC
Confidence            57999999999999999999999999999999988776433           11           1345566 5678999


Q ss_pred             eEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHh----cCCcEEecCCC
Q 027255           59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS----KGGHFLEAPVS  121 (226)
Q Consensus        59 vvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~----~g~~~ld~pv~  121 (226)
                      +||+|+|.+..++..++  .++.+.++++++|++ +|+++... ++++.+..    .|.+|+ .|+.
T Consensus       117 lVIeaVpe~~~~k~~v~--~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf~-~P~~  178 (463)
T 1zcj_A          117 LVVEAVFEDMNLKKKVF--AELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHFF-SPAH  178 (463)
T ss_dssp             EEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEEC-SSTT
T ss_pred             EEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeecC-CCcc
Confidence            99999998765554443  457777888999887 55444333 56554432    255665 5543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=99.47  E-value=1.4e-13  Score=102.82  Aligned_cols=105  Identities=20%  Similarity=0.232  Sum_probs=86.5

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      .+|+|||+    |.||..|+++|.+.||+|+.+|++.+.+     .|...+.|++++.+..|++++++|. +.+.+++  
T Consensus        15 ~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~-~~v~~v~--   86 (138)
T 1y81_A           15 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVA--   86 (138)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HHHHHHH--
T ss_pred             CeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCH-HHHHHHH--
Confidence            37999999    9999999999999999977777765443     5888899999999999999999994 7888888  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                       +++.+ ...+.+++++++.    .+++.+.++++|+.+++--
T Consensus        87 -~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igpn  123 (138)
T 1y81_A           87 -KEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFGR  123 (138)
T ss_dssp             -HHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECSC
T ss_pred             -HHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcCC
Confidence             55544 4456788888775    4778888889999999843

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.46  E-value=7.6e-14  Score=118.93  Aligned_cols=119  Identities=13%  Similarity=0.058  Sum_probs=97.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|+++...|++|++|||++++.  + ...+. ..+++++++++|+|++++|.....+.++.  .+.
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~--~~~  219 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIIN--EAA  219 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBC--HHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhC--HHH
Confidence            579999999999999999999999999999988653  1 22333 34899999999999999999887777662  246


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+...+.+.+.+.+..+.-.---|+-.++
T Consensus       220 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  264 (333)
T 1dxy_A          220 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET  264 (333)
T ss_dssp             HHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred             HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence            678999999999999999899999999988776544444666654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.45  E-value=8.1e-14  Score=129.80  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=88.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~   56 (226)
                      +||+|||+|.||.+||.+|+++||+|++||+++++++...+           .|             ++.+.++ +++++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            47999999999999999999999999999999998776422           23             2345666 57889


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEec-CCCCHHHHHHHHHHHHh----cCCcEEecCCCCChHhhccCc
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDM-STVDHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQ  131 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~----~g~~~ld~pv~g~~~~a~~g~  131 (226)
                      ||+||+|+|++..++..++  .++.+.+++++++++. |+..+.   ++++.+..    .|.+|++ |+..       ..
T Consensus       392 aDlVIeaVpe~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~---~la~~~~~p~~~iG~hf~~-P~~~-------~~  458 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIF--ADLEKYCPQHCILASNTSTIDLN---KIGERTKSQDRIVGAHFFS-PAHI-------MP  458 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH---HHTTTCSCTTTEEEEEECS-STTT-------CC
T ss_pred             CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHH---HHHHHhcCCCCEEEecCCC-Cccc-------Cc
Confidence            9999999999877765554  4577788889988764 455554   24433321    2556665 5433       23


Q ss_pred             EEEEeccC
Q 027255          132 LVILSAGE  139 (226)
Q Consensus       132 ~~~~~gg~  139 (226)
                      ++.++.|+
T Consensus       459 lvevv~g~  466 (725)
T 2wtb_A          459 LLEIVRTN  466 (725)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEECC
Confidence            55666664

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.45  E-value=8.1e-14  Score=118.69  Aligned_cols=119  Identities=18%  Similarity=0.087  Sum_probs=95.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.||+.+|+++...|++|++|||++++.  + ...+. ..+++++++++|+|++++|.....+.++.  .+.
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~--~~~  220 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVVT--RDF  220 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBC--HHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHHHHhC--HHH
Confidence            589999999999999999999999999999988754  2 22333 45899999999999999998777766652  245


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      ++.+++|.++||+++..+...+.+.+.+.+..+...---|+..++
T Consensus       221 l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  265 (331)
T 1xdw_A          221 LKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEA  265 (331)
T ss_dssp             HHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGG
T ss_pred             HhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCC
Confidence            677999999999999998889999999998776543334555544

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.44  E-value=9e-14  Score=120.03  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=91.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHH----HHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA----ALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~----~~~v~~~   76 (226)
                      ++|||||+|.||+.+|++|...|++|++||++++..    ..+. ...++++++++||+|++++|....    .+.++. 
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~-  190 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLD-  190 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC-
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhcC-
Confidence            589999999999999999999999999999876542    2343 346899999999999999998766    666652 


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc--EEec
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH--FLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~--~ld~  118 (226)
                       .+.++.+++|.++||+++..+...+.+.+.+.+..+.  .+|.
T Consensus       191 -~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV  233 (380)
T 2o4c_A          191 -EPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDV  233 (380)
T ss_dssp             -HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESC
T ss_pred             -HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeee
Confidence             2466889999999999999988899999999887654  4554

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.43  E-value=6e-14  Score=113.28  Aligned_cols=95  Identities=16%  Similarity=0.243  Sum_probs=75.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||+|||+|.||++||++|.++||+|++|++.                  ++ ++++|  |+|+|++ .+.+++   .++
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl---~~l   61 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV---EKL   61 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH---HHH
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH---HHH
Confidence            79999999999999999999999999999983                  12 56789  8999995 888888   778


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe-cCCCCC
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGS  123 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld-~pv~g~  123 (226)
                      .+.++++++|+|+|...+.   .+.+.+.++|+.|+. .|++|.
T Consensus        62 ~~~l~~g~ivvd~sgs~~~---~vl~~~~~~g~~fvg~HPm~g~  102 (232)
T 3dfu_A           62 SAFARRGQMFLHTSLTHGI---TVMDPLETSGGIVMSAHPIGQD  102 (232)
T ss_dssp             HTTCCTTCEEEECCSSCCG---GGGHHHHHTTCEEEEEEEEETT
T ss_pred             HHhcCCCCEEEEECCcCHH---HHHHHHHhCCCcEEEeeeCCCC
Confidence            8888899999998754332   122333467888886 588764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.41  E-value=1.3e-13  Score=115.74  Aligned_cols=121  Identities=24%  Similarity=0.327  Sum_probs=91.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc--cCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~--~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ++|+|||+|.||+.+|+.|...|++|++|||++++.+.+.+.|+..  ..+++++++++|+|++++|..-     + + +
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~-----i-~-~  230 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMI-----L-N-Q  230 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCC-----B-C-H
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhh-----h-C-H
Confidence            5799999999999999999999999999999998887777777654  3578889999999999999721     1 1 1


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC-CCCChHhhccCc
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP-VSGSKQPAETGQ  131 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p-v~g~~~~a~~g~  131 (226)
                      ..++.++++.++||++.......  + +...+.|+.+++.| +.+....+..+.
T Consensus       231 ~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg~~g~v~~a~a~~  281 (300)
T 2rir_A          231 TVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAPGLPGIVAPKTAGQ  281 (300)
T ss_dssp             HHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCHHHHHCHHHHHH
T ss_pred             HHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECCCCCCcHHHHHHHH
Confidence            23466889999999997532221  2 44566799999999 555553444433

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.40  E-value=3.6e-13  Score=111.85  Aligned_cols=109  Identities=25%  Similarity=0.358  Sum_probs=85.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHH--HHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAA--LSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~--~~v~~~~   77 (226)
                      ++|+|||+|.||++++..|.+.|++|++|||++++.+.+.+. |+....++.++++++|+||+|+|.+..-  ...+   
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i---  206 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIF---  206 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSS---
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCC---
Confidence            589999999999999999999999999999999998888754 6666668888889999999999985321  1122   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .  .+.++++++++|+++ ..   ..+.+.++++|+.++++
T Consensus       207 ~--~~~l~~g~~viDv~~-~~---t~ll~~a~~~g~~~v~g  241 (275)
T 2hk9_A          207 N--YDLIKKDHVVVDIIY-KE---TKLLKKAKEKGAKLLDG  241 (275)
T ss_dssp             C--GGGCCTTSEEEESSS-SC---CHHHHHHHHTTCEEECS
T ss_pred             C--HHHcCCCCEEEEcCC-Ch---HHHHHHHHHCcCEEECC
Confidence            1  245778999999988 22   23555666788888765

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.37  E-value=7.9e-13  Score=108.96  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=84.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHH--HHHHhhccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAA--ALSVVFDKG   78 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~--~~~v~~~~~   78 (226)
                      +|+|||+|.||+++++.|.+.|++|++|||++++.+.+.+. +.. ..++.++ +++|+|++|+|.+.+  +...+   .
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l---~  192 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPL---P  192 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSS---C
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCC---C
Confidence            68999999999999999999999999999999988887654 554 5677888 899999999998532  11222   1


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                        .+.++++++++|+++. |..+ ++.+.++++|+.++++
T Consensus       193 --~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~g  228 (263)
T 2d5c_A          193 --AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQTG  228 (263)
T ss_dssp             --GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEECS
T ss_pred             --HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEECc
Confidence              3557789999999876 3333 4777778888888765

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=99.34  E-value=4.6e-13  Score=114.80  Aligned_cols=111  Identities=15%  Similarity=0.211  Sum_probs=90.4

Q ss_pred             CeEEEEecChhHHHHHHHHHh--CCCeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      ++|+|||+|.||..+++.|..  ...+|++|||++++.+++.+.     |  +..+.+++++++++|+|++|+|+. ...
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~~~  208 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-AYA  208 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-SEE
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-CCC
Confidence            479999999999999999864  346899999999999998764     5  345789999999999999999985 222


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .++.     .+.+++|++|+++++..|. .+++...+..++..|+|.
T Consensus       209 pvl~-----~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~  249 (350)
T 1x7d_A          209 TIIT-----PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEY  249 (350)
T ss_dssp             EEEC-----GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESS
T ss_pred             ceec-----HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECC
Confidence            3331     2467899999999998887 677777777788899997

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.34  E-value=2.1e-12  Score=113.65  Aligned_cols=92  Identities=22%  Similarity=0.212  Sum_probs=75.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhC------CCeEEEEcCCch-hHHHHHHCCCcc----cCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN------GFKVTVWNRTLS-KCDELVAHGATV----GGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      +||+|||+|+||.+||++|.+.      |++|++++|+.+ ..+...+.|+..    +.++.++++++|+||+++|+..+
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~  134 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ  134 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHH
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHH
Confidence            5899999999999999999999      999987776544 455566778876    36899999999999999998554


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                       .+++   .++.+.+++|++|+.+.-.
T Consensus       135 -~eVl---~eI~p~LK~GaILs~AaGf  157 (525)
T 3fr7_A          135 -ADNY---EKIFSHMKPNSILGLSHGF  157 (525)
T ss_dssp             -HHHH---HHHHHHSCTTCEEEESSSH
T ss_pred             -HHHH---HHHHHhcCCCCeEEEeCCC
Confidence             5677   5688999999997665543

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=99.33  E-value=8.2e-13  Score=99.48  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             eEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCc--hhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTL--SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~--~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      +|+|||+    |.||..++++|.+.||+|+.+|++.  +.+     .|...+.|++++.+..|++++|+|. ..+.+++ 
T Consensus        15 ~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v~-   87 (145)
T 2duw_A           15 TIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNS-EAAWGVA-   87 (145)
T ss_dssp             CEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCS-THHHHHH-
T ss_pred             EEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH-
Confidence            6999999    8999999999999999987777765  333     4888888999998899999999996 7788888 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                        +++.+ ...+.+++++++.    .+++.+.++++|+.++-
T Consensus        88 --~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           88 --QEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVM  122 (145)
T ss_dssp             --HHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred             --HHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEc
Confidence              55554 4456788887766    57788888899999884

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.30  E-value=5.2e-12  Score=105.72  Aligned_cols=114  Identities=20%  Similarity=0.227  Sum_probs=86.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ++|+|||+|.||+.+|+.|...|++|++|||++++.+.+.+.|+...  .+++++++++|+|++++|..-.-+       
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~-------  228 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTA-------  228 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCBCH-------
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHhCH-------
Confidence            47999999999999999999999999999999988777777776643  567888999999999998621111       


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK  124 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~  124 (226)
                      ..++.++++.++||++......  .+ +.+...|+.+++.|-..+.
T Consensus       229 ~~l~~mk~~~~lin~ar~~~~~--~~-~~a~~~Gv~~~~~~~l~~~  271 (293)
T 3d4o_A          229 NVLAEMPSHTFVIDLASKPGGT--DF-RYAEKRGIKALLVPGLPGI  271 (293)
T ss_dssp             HHHHHSCTTCEEEECSSTTCSB--CH-HHHHHHTCEEEECCCHHHH
T ss_pred             HHHHhcCCCCEEEEecCCCCCC--CH-HHHHHCCCEEEECCCCCcc
Confidence            2345678999999999743222  12 4456678888877655443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.30  E-value=4e-12  Score=110.80  Aligned_cols=89  Identities=13%  Similarity=0.104  Sum_probs=74.3

Q ss_pred             CeEEEEecChhHHHHHHHHHh-CCCeEEEEc---CCchhHHHH-HHCC---------C----------cccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLR-NGFKVTVWN---RTLSKCDEL-VAHG---------A----------TVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~-~G~~V~~~d---r~~~~~~~l-~~~g---------~----------~~~~s~~~~~~~   56 (226)
                      |||+|||+|.||..+|..|++ +||+|++|+   |++++.+.+ .+.|         .          ..+.++++++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            689999999999999999988 599999999   888888774 4333         1          145678888899


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEec
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDM   93 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~   93 (226)
                      +|+||+|+|. ...++++   +.+.+.+.++++|++.
T Consensus        83 aD~Vilav~~-~~~~~v~---~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPA-FAHEGYF---QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCG-GGHHHHH---HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCch-HHHHHHH---HHHHhhCCCCcEEEEc
Confidence            9999999988 4578888   7788888889999885

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=99.27  E-value=4e-11  Score=100.74  Aligned_cols=112  Identities=14%  Similarity=0.162  Sum_probs=90.2

Q ss_pred             CeEEEEecChhHHH-HHHHHHh-CCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||||||+|.||.. ++..|.+ .++++. ++|+++++++.+.+. |+..+.+.++++++.|+|++|+|+..+.+.+.  
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~--   84 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIK--   84 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHH--
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHH--
Confidence            47999999999996 8998887 467766 899999999888764 77778999999999999999999977766554  


Q ss_pred             ccccccccCCCcE-EEe-cCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           77 KGGVLEQICPGKG-YID-MSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        77 ~~~l~~~l~~g~i-vvd-~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                           ..++.|+. +++ -.+.++...+++.+.++++|+.+.-+-
T Consensus        85 -----~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~  124 (308)
T 3uuw_A           85 -----ILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGF  124 (308)
T ss_dssp             -----HHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred             -----HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEee
Confidence                 34455654 444 345789999999999999988765553

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.26  E-value=6.2e-12  Score=106.42  Aligned_cols=112  Identities=21%  Similarity=0.233  Sum_probs=83.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC---------------cccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---------------TVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~---------------~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+|.||+.+|..|.++|++|++|+|++  .+.+.+.|+               .++.+++++.+.+|+||+|+|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            689999999999999999999999999999986  366665542               234567777668999999998


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      . .++++++   +.+.+.+.++++||.+.+.- +.  +.+.+.+...  .++.+|++.
T Consensus        81 ~-~~~~~~l---~~l~~~l~~~t~Iv~~~nGi~~~--~~l~~~~~~~--~vl~g~~~~  130 (320)
T 3i83_A           81 V-VEGADRV---GLLRDAVAPDTGIVLISNGIDIE--PEVAAAFPDN--EVISGLAFI  130 (320)
T ss_dssp             C-CTTCCHH---HHHTTSCCTTCEEEEECSSSSCS--HHHHHHSTTS--CEEEEEEEE
T ss_pred             C-CChHHHH---HHHHhhcCCCCEEEEeCCCCChH--HHHHHHCCCC--cEEEEEEEe
Confidence            8 5677777   67778888899988877642 22  3444444332  466666543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=99.25  E-value=5.2e-11  Score=100.91  Aligned_cols=118  Identities=11%  Similarity=0.067  Sum_probs=93.1

Q ss_pred             CeEEEEecChhHHHH-HHHHHhCCCeEE-EEcCCchhHHHHHHC-CCc-ccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAI-SMNLLRNGFKVT-VWNRTLSKCDELVAH-GAT-VGGSPAEVIK--KCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~-A~~l~~~G~~V~-~~dr~~~~~~~l~~~-g~~-~~~s~~~~~~--~advvi~~~p~~~~~~~v~   74 (226)
                      |||||||+|.||..+ +..|.+.++++. ++|+++++.+.+.+. |+. .+.+.+++++  ++|+|++++|+..+.+.+.
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   80 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL   80 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence            799999999999998 888888778865 889999998887664 664 6789999987  4999999999876655544


Q ss_pred             hcccccccccCCCc-EEEec-CCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           75 FDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        75 ~~~~~l~~~l~~g~-ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                             ..++.|+ ++++. .+.++...+++.+.++++|+.+..+......+
T Consensus        81 -------~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p  126 (332)
T 2glx_A           81 -------AAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAA  126 (332)
T ss_dssp             -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSH
T ss_pred             -------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCH
Confidence                   3455676 45553 35688999999999999999988887655433

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=99.24  E-value=6.8e-11  Score=100.30  Aligned_cols=112  Identities=13%  Similarity=0.148  Sum_probs=90.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~   75 (226)
                      +||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+. |+. +.+++++++  +.|+|++|+|+..+.+.+. 
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~-   81 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIE-   81 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHH-
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHH-
Confidence            3899999999999999999985 77866 799999999887764 777 899999998  7999999999977776654 


Q ss_pred             cccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           76 DKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        76 ~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                            ..++.|+ ++++.. +.++...+++.+.++++|+.+.-+..
T Consensus        82 ------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~  122 (331)
T 4hkt_A           82 ------RFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFN  122 (331)
T ss_dssp             ------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCG
T ss_pred             ------HHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEccc
Confidence                  3344565 455544 57899999999999999887766543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.24  E-value=1.2e-11  Score=92.67  Aligned_cols=87  Identities=20%  Similarity=0.318  Sum_probs=71.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      ++|+|||+|.||+.+++.|...|++|++|||++++.+.+.+. +..  ...+..++++++|+||.|+|.+..   ++   
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~---~~---   95 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP---IV---   95 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC---SB---
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc---Ee---
Confidence            589999999999999999999999999999999999887654 543  467888999999999999998532   22   


Q ss_pred             cccccccCCCcEEEecCC
Q 027255           78 GGVLEQICPGKGYIDMST   95 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st   95 (226)
                      .  ...++++.+++|.+.
T Consensus        96 ~--~~~l~~g~~vid~~~  111 (144)
T 3oj0_A           96 E--ERSLMPGKLFIDLGN  111 (144)
T ss_dssp             C--GGGCCTTCEEEECCS
T ss_pred             e--HHHcCCCCEEEEccC
Confidence            1  145678999999874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=99.23  E-value=1.5e-10  Score=85.38  Aligned_cols=109  Identities=16%  Similarity=0.229  Sum_probs=77.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcc-c---CCHHHH----hhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV-G---GSPAEV----IKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~-~---~s~~~~----~~~advvi~~~p~~~~~~   71 (226)
                      |+|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. ++.. .   .+...+    ++++|+||+++|++....
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~   84 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL   84 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHHH
Confidence            789999999999999999999999999999999998888753 6532 1   123222    467999999999864433


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      .+.    .+...+.++++++..+...  .    .+.+.+.|+.++-.|
T Consensus        85 ~~~----~~~~~~~~~~ii~~~~~~~--~----~~~l~~~g~~~v~~p  122 (140)
T 1lss_A           85 MSS----LLAKSYGINKTIARISEIE--Y----KDVFERLGVDVVVSP  122 (140)
T ss_dssp             HHH----HHHHHTTCCCEEEECSSTT--H----HHHHHHTTCSEEECH
T ss_pred             HHH----HHHHHcCCCEEEEEecCHh--H----HHHHHHcCCCEEECH
Confidence            222    2334455677777654433  2    234556788777776

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=99.23  E-value=6.1e-11  Score=100.67  Aligned_cols=113  Identities=15%  Similarity=0.154  Sum_probs=91.8

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhh--hCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~   75 (226)
                      ||||||+|.||..+++.|.+. +++|. ++|+++++.+.+.+. |+ ..+.+.+++++  +.|+|++|+|+..+.+.+. 
T Consensus         7 ~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~-   85 (330)
T 3e9m_A            7 RYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAK-   85 (330)
T ss_dssp             EEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHH-
T ss_pred             EEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHH-
Confidence            799999999999999999985 67765 789999999887664 66 57899999998  7899999999987766654 


Q ss_pred             cccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           76 DKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        76 ~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                            ..+..|+ ++++.. +.++...+++.+.++++|+.+..+...
T Consensus        86 ------~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~  127 (330)
T 3e9m_A           86 ------LALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKS  127 (330)
T ss_dssp             ------HHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSG
T ss_pred             ------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhh
Confidence                  3344554 566655 578999999999999999887777543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=99.23  E-value=8.2e-12  Score=104.76  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=84.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CC---ccc--CCHHHHhhhCCeEEEecCCHHHH--H
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GA---TVG--GSPAEVIKKCTITIGMLADPAAA--L   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~---~~~--~s~~~~~~~advvi~~~p~~~~~--~   71 (226)
                      ++|.|||+|.||++++..|.+.|+ +|++|||++++++.+.+. +.   .+.  .++.+.+.++|+||.|+|.+..-  +
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~  221 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVE  221 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCS
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCC
Confidence            479999999999999999999998 899999999999888764 33   222  24556678899999999875321  1


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+.+.    ...++++.+++|+++. |..+. +.+.++++|+.++|+
T Consensus       222 ~~~i~----~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~v~G  262 (297)
T 2egg_A          222 VQPLS----LERLRPGVIVSDIIYN-PLETK-WLKEAKARGARVQNG  262 (297)
T ss_dssp             CCSSC----CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEECS
T ss_pred             CCCCC----HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCEEECC
Confidence            11110    2346789999999984 55553 777888889988876

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=99.22  E-value=6.2e-11  Score=101.07  Aligned_cols=112  Identities=14%  Similarity=0.192  Sum_probs=91.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~   75 (226)
                      +||||||+|.||..++..|.+. +++|. ++|+++++++.+.+. |+..+.+++++++  +.|+|++|+|+..+.+.+. 
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~-   83 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLIT-   83 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHH-
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHH-
Confidence            3799999999999999999986 67765 899999999887765 8888999999998  7899999999977776654 


Q ss_pred             cccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           76 DKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        76 ~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                            ..+..|+ ++++.. +.++...+++.+.++++|+.+.-+.
T Consensus        84 ------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~  123 (344)
T 3euw_A           84 ------RAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGF  123 (344)
T ss_dssp             ------HHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECC
T ss_pred             ------HHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecc
Confidence                  3344554 556654 5788999999999998887766553

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=99.22  E-value=7.3e-11  Score=101.06  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=90.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~   74 (226)
                      +||||||+|.||..++..|.+.  ++++. ++|+++++++.+.+. |+..+.+++++++  +.|+|++|+|+..+.+.+.
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   93 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPTQSI   93 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence            3799999999999999999987  67755 899999999887664 8888999999997  6899999999977766554


Q ss_pred             hcccccccccCCCcEEE-ecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           75 FDKGGVLEQICPGKGYI-DMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivv-d~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                             ..+..|+.|+ +.. +.++...+++.+.++++|+.+.-+.
T Consensus        94 -------~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~  133 (354)
T 3q2i_A           94 -------ECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVK  133 (354)
T ss_dssp             -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred             -------HHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEE
Confidence                   3445665544 433 5688999999999999988776554

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=99.20  E-value=8.6e-11  Score=100.61  Aligned_cols=111  Identities=17%  Similarity=0.272  Sum_probs=90.3

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHh--hhCCeEEEecCCHHHHHHHhhc
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVI--KKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~--~~advvi~~~p~~~~~~~v~~~   76 (226)
                      ||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+. |+..+.++++++  .+.|+|++|+|+..+.+.+.  
T Consensus         7 ~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~--   84 (354)
T 3db2_A            7 GVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVIE--   84 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHH--
T ss_pred             eEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHH--
Confidence            799999999999999999986 78854 889999999887664 888899999999  45899999999977776654  


Q ss_pred             ccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           77 KGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        77 ~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                           ..+..|+ ++++.. +.++...+++.+.++++|+.+.-+.
T Consensus        85 -----~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~  124 (354)
T 3db2_A           85 -----QCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGH  124 (354)
T ss_dssp             -----HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             -----HHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEee
Confidence                 3445565 455544 5788999999999999888766554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=99.20  E-value=1.4e-10  Score=97.90  Aligned_cols=111  Identities=13%  Similarity=0.175  Sum_probs=87.9

Q ss_pred             CeEEEEecChhHHH-HHHHHHh-CCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||||||+|.||.. ++..|.+ .++++. ++|+++++.+.+.+. |+..+++.+++..++|+|++|+|+..+.+.+.  
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~--   83 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS--   83 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHH--
Confidence            47999999999997 8888876 467765 899999998887665 77777888877667999999999877666554  


Q ss_pred             ccccccccCCCc-EEEec-CCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           77 KGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~-ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                           ..++.|+ ++++. .+.++...+++.+.+++.|+.+..+
T Consensus        84 -----~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~  122 (319)
T 1tlt_A           84 -----TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVG  122 (319)
T ss_dssp             -----HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             -----HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe
Confidence                 3455676 56663 4568899999999999998877665

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.20  E-value=4e-11  Score=101.25  Aligned_cols=96  Identities=14%  Similarity=0.181  Sum_probs=76.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC--------------CcccCCHHHHhhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG--------------ATVGGSPAEVIKK   56 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g--------------~~~~~s~~~~~~~   56 (226)
                      ||+|||+|.||+.||..++.+|++|++||++++..++..           +.|              +..++++.+++++
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~~   87 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEG   87 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTTT
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhcc
Confidence            799999999999999999999999999999998655421           222              2346788899999


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC-CHH
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHE   99 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~   99 (226)
                      ||+|+.++|..-.++.-+|  .++-+.+++++++-..|++ .+.
T Consensus        88 ad~ViEav~E~l~iK~~lf--~~l~~~~~~~aIlaSNTSsl~is  129 (319)
T 3ado_A           88 VVHIQECVPENLDLKRKIF--AQLDSIVDDRVVLSSSSSCLLPS  129 (319)
T ss_dssp             EEEEEECCCSCHHHHHHHH--HHHHTTCCSSSEEEECCSSCCHH
T ss_pred             CcEEeeccccHHHHHHHHH--HHHHHHhhhcceeehhhhhccch
Confidence            9999999999888877666  5577778788887665443 443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=99.20  E-value=1.2e-11  Score=104.93  Aligned_cols=108  Identities=16%  Similarity=0.169  Sum_probs=85.8

Q ss_pred             CeEEEEecChhHHHHHHHHHh--CCCeEEEEcCCchhHHHHHHC------CCcccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH------GATVGGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~~~~~l~~~------g~~~~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      ++|+|||+|.||..+++.|.+  ...+|.+|||++++++++.+.      .+. +.++++++ ++|+|++|+|...   .
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~---p  200 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK---P  200 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS---C
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC---c
Confidence            479999999999999999987  346899999999999988753      244 78899999 9999999999743   3


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      ++   .  .+.+++|++|+++++..|. .+++...+.+++..|+|.+
T Consensus       201 v~---~--~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~~  241 (322)
T 1omo_A          201 VV---K--AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDDL  241 (322)
T ss_dssp             CB---C--GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESCH
T ss_pred             ee---c--HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECCH
Confidence            33   1  2467899999999988877 5566655666667899964

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=99.19  E-value=3.6e-11  Score=101.39  Aligned_cols=114  Identities=14%  Similarity=0.125  Sum_probs=90.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||||||+|.||..+++.|.+. +++ |.++|+++++.+.+.+. +..+.+.+++++  ++|+|++|+|+..+.+.+.  
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~--   87 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITL--   87 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHH--
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHH--
Confidence            4799999999999999999985 576 45899999988776655 667789999986  7999999999876665554  


Q ss_pred             ccccccccCCCc-EEEec-CCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           77 KGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        77 ~~~l~~~l~~g~-ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                           ..++.|+ ++++. .+.++...+++.+.++++|+.+..+....
T Consensus        88 -----~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r  130 (315)
T 3c1a_A           88 -----AAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQL  130 (315)
T ss_dssp             -----HHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGG
T ss_pred             -----HHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechh
Confidence                 3455676 55663 45688999999999999999887776443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.18  E-value=1.6e-10  Score=89.67  Aligned_cols=111  Identities=11%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCCCccc----CCH---HHH--hhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVG----GSP---AEV--IKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g~~~~----~s~---~~~--~~~advvi~~~p~~~~~   70 (226)
                      ++|.|+|+|.||..+|+.|.+. |++|+++|+++++.+.+.+.|+...    .+.   .++  ++++|+||+++|++...
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~  119 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQGN  119 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHHH
Confidence            4799999999999999999999 9999999999999999888887543    222   222  45789999999987766


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      ..++   . ....+.+...++.. +..+...+    .+.+.|+.++..|.
T Consensus       120 ~~~~---~-~~~~~~~~~~ii~~-~~~~~~~~----~l~~~G~~~vi~p~  160 (183)
T 3c85_A          120 QTAL---E-QLQRRNYKGQIAAI-AEYPDQLE----GLLESGVDAAFNIY  160 (183)
T ss_dssp             HHHH---H-HHHHTTCCSEEEEE-ESSHHHHH----HHHHHTCSEEEEHH
T ss_pred             HHHH---H-HHHHHCCCCEEEEE-ECCHHHHH----HHHHcCCCEEEchH
Confidence            5554   2 22334444444433 33455443    45566888887764

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=99.18  E-value=1.7e-10  Score=99.02  Aligned_cols=111  Identities=16%  Similarity=0.179  Sum_probs=89.7

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~~   77 (226)
                      ||||||+|.||..++..|.+. +++|. ++|+++++.+.....|+..+.+++++++  +.|+|++|+|+..+.+.+.   
T Consensus         7 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~---   83 (359)
T 3e18_A            7 QLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAI---   83 (359)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHH---
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH---
Confidence            699999999999999999876 67765 7899999987666678988999999998  6899999999977776655   


Q ss_pred             cccccccCCCcE-EEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           78 GGVLEQICPGKG-YIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        78 ~~l~~~l~~g~i-vvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                          ..++.|+. +++-- +.++...+++.+.++++|+.+.-+-
T Consensus        84 ----~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~  123 (359)
T 3e18_A           84 ----SALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQ  123 (359)
T ss_dssp             ----HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             ----HHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEe
Confidence                44556664 45543 5688999999999999887765543

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=99.18  E-value=1.4e-10  Score=98.87  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=89.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~--~advvi~~~p~~~~~~~v~   74 (226)
                      |||||||+|.||..++..|.+. ++++. ++|+++++.+.+.+. |+ ..+.+++++++  ++|+|++|+|+..+.+.+.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   82 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVI   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHH
Confidence            3899999999999999999875 67765 789999998887664 65 47899999998  7999999999977766554


Q ss_pred             hcccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           75 FDKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        75 ~~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                             ..+..|+ ++++.. +.++...+++.+.++++|+.+.-+-
T Consensus        83 -------~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~  122 (344)
T 3ezy_A           83 -------ACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGF  122 (344)
T ss_dssp             -------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             -------HHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEee
Confidence                   3344565 555544 6789999999999999887665553

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=99.16  E-value=1.8e-10  Score=98.59  Aligned_cols=112  Identities=14%  Similarity=0.126  Sum_probs=90.9

Q ss_pred             CeEEEEecChhHH-HHHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGK-AISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~   74 (226)
                      +||||||+|.||. .++..|.+. +++|. ++|+++++.+.+.+. |+..+.+++++++  +.|+|++|+|+..+.+.+.
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~  107 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEWID  107 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHH
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence            3799999999998 799999887 67765 889999999888765 8888899999987  5899999999987776655


Q ss_pred             hcccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           75 FDKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        75 ~~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                             ..+..|+ ++++-. +.+++..+++.+.++++|+.+..+-
T Consensus       108 -------~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~  147 (350)
T 3rc1_A          108 -------RALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENF  147 (350)
T ss_dssp             -------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             -------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEe
Confidence                   3445665 455544 5689999999999999998776654

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=99.16  E-value=1.4e-10  Score=98.07  Aligned_cols=111  Identities=10%  Similarity=0.100  Sum_probs=84.7

Q ss_pred             CeEEEEecChhHH-HHHHHHHhC-CCeEEEEcCCchhHHHHHHC-CCcc-cCCHHHHh-hhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGK-AISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV-GGSPAEVI-KKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~-g~~~-~~s~~~~~-~~advvi~~~p~~~~~~~v~~   75 (226)
                      |||||||+|.||. .+++.|.+. +++|.++|+++++.+++.+. |+.. ..+..+++ .++|+|++|+|+..+.+.+. 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~-   81 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA-   81 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH-
Confidence            3899999999998 599999874 67877999999999887664 6653 44545555 67999999999876665554 


Q ss_pred             cccccccccCCCc-EEEec-CCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           76 DKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        76 ~~~~l~~~l~~g~-ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                            ..++.|+ ++++. .+.++...+++.+.++++|+.+..+
T Consensus        82 ------~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~  120 (323)
T 1xea_A           82 ------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVG  120 (323)
T ss_dssp             ------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEe
Confidence                  3345665 55664 4568889999999999998877665

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=99.15  E-value=2.2e-10  Score=97.70  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=87.4

Q ss_pred             CeEEEEecChhHHHHHHHHH-h-CCCeEE-EEcCCchhHHHHHHC-C--CcccCCHHHHhhh--CCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLL-R-NGFKVT-VWNRTLSKCDELVAH-G--ATVGGSPAEVIKK--CTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~-~G~~V~-~~dr~~~~~~~l~~~-g--~~~~~s~~~~~~~--advvi~~~p~~~~~~~   72 (226)
                      +||||||+|.||..++..|. + .++++. ++|+++++.+.+.+. |  ...++++++++++  .|+|++|+|+..+.+.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   82 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESS   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHH
Confidence            38999999999999999998 5 467755 789999999887764 6  6788999999986  8999999999777766


Q ss_pred             HhhcccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcE
Q 027255           73 VVFDKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~  115 (226)
                      +.       ..++.|+ ++++.. +.++...+++.+.++++|+.+
T Consensus        83 ~~-------~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~  120 (344)
T 3mz0_A           83 VL-------KAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL  120 (344)
T ss_dssp             HH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred             HH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence            55       3455665 455544 568899999999999988865

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=99.15  E-value=2.8e-10  Score=96.88  Aligned_cols=116  Identities=15%  Similarity=0.216  Sum_probs=90.9

Q ss_pred             CeEEEEecChhHHHHHHHHH-h-CCCe-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhh--hCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLL-R-NGFK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~-~G~~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~--~advvi~~~p~~~~~~~v   73 (226)
                      |||+|||+|.||..++..|. + .+++ |.++|+++++.+.+.+. |+ ..+.+.+++++  ++|+|++|+|+..+.+.+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   88 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMT   88 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHH
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHH
Confidence            47999999999999999998 5 4677 45899999999887765 77 57889999987  689999999997766655


Q ss_pred             hhcccccccccCCCcE-EEec-CCCCHHHHHHHHHHHHhc-CCcEEecCCCCC
Q 027255           74 VFDKGGVLEQICPGKG-YIDM-STVDHETSIKISRAITSK-GGHFLEAPVSGS  123 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~i-vvd~-st~~~~~~~~l~~~~~~~-g~~~ld~pv~g~  123 (226)
                      .       ..++.|+. +++. .+.++...+++.+.++++ |+.+..+.....
T Consensus        89 ~-------~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~  134 (346)
T 3cea_A           89 I-------YAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRY  134 (346)
T ss_dssp             H-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGT
T ss_pred             H-------HHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEeccccc
Confidence            4       34556764 4543 346788999999999999 988877655433

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.14  E-value=1.5e-10  Score=82.81  Aligned_cols=101  Identities=17%  Similarity=0.226  Sum_probs=74.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCCCccc-------CCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~~~-------~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      |+|.|+|+|.||+.+++.|.+.| ++|++++|++++.+.+...++...       .+..++++++|+||.++|.. ....
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~-~~~~   84 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF-LTPI   84 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG-GHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch-hhHH
Confidence            47999999999999999999999 999999999999988876554321       23445667899999999764 3334


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHH
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAIT  109 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~  109 (226)
                      ++   .   ...+.|..++|.++ .+...+.+.+...
T Consensus        85 ~~---~---~~~~~g~~~~~~~~-~~~~~~~~~~~~~  114 (118)
T 3ic5_A           85 IA---K---AAKAAGAHYFDLTE-DVAATNAVRALVE  114 (118)
T ss_dssp             HH---H---HHHHTTCEEECCCS-CHHHHHHHHHHHH
T ss_pred             HH---H---HHHHhCCCEEEecC-cHHHHHHHHHHHH
Confidence            43   1   23456778888775 4446666665543

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=99.14  E-value=4e-10  Score=95.70  Aligned_cols=111  Identities=13%  Similarity=0.167  Sum_probs=90.5

Q ss_pred             CeEEEEecChhHH-HHHHHHHhCCCeE-EEEcCCchhHHHHHHC--CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGK-AISMNLLRNGFKV-TVWNRTLSKCDELVAH--GATVGGSPAEVIK--KCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~~G~~V-~~~dr~~~~~~~l~~~--g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~   74 (226)
                      +||||||+|.||. .++..|...+++| .++|+++++.+.+.+.  +...+.+.+++++  +.|+|++|+|+..+.+.+.
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   84 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELAL   84 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHH
Confidence            4899999999996 6888887778885 6899999999888765  6778899999987  5899999999987776665


Q ss_pred             hcccccccccCCCc-EEEec-CCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           75 FDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        75 ~~~~~l~~~l~~g~-ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                             ..++.|+ ++++. .+.++...+++.+.++++|+.+.-+
T Consensus        85 -------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~  123 (336)
T 2p2s_A           85 -------RTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVY  123 (336)
T ss_dssp             -------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEEC
T ss_pred             -------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence                   4455676 55664 4568899999999999999887655

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.13  E-value=1.3e-10  Score=98.82  Aligned_cols=120  Identities=17%  Similarity=0.167  Sum_probs=96.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+...|.+|.+||+.+..  .....++. ..++++++++||+|++++|-....+.++.  ...
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~-~~~l~ell~~sDivslh~Plt~~T~~li~--~~~  216 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCV-YTSLDELLKESDVISLHVPYTKETHHMIN--EER  216 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred             cEEEEECcchHHHHHHHhhcccCceeeecCCccch--hhhhcCce-ecCHHHHHhhCCEEEEcCCCChhhccCcC--HHH
Confidence            47999999999999999999999999999987653  33445554 45899999999999999998787777663  245


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      +..+++|.++|+++....-....+.+.+.+..+...---|+-.++
T Consensus       217 l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EP  261 (334)
T 3kb6_A          217 ISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEE  261 (334)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHH
T ss_pred             HhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCC
Confidence            678999999999999888888889999987655443334555554

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.12  E-value=7.1e-11  Score=99.41  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=71.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCC----------HHHHhhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGS----------PAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s----------~~~~~~~advvi~~~p~~~~~   70 (226)
                      |||+|||+|.||..+|..|. +|++|++|+|++++.+.+++.|+....+          ..+....+|+||+|++. .++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~-~~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQ-HQL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCG-GGH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCH-HHH
Confidence            79999999999999999999 9999999999999988898877654311          12345679999999977 678


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCH
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~   98 (226)
                      ++++   +.+.+ +.+++ ||.+.+.-.
T Consensus        81 ~~~l---~~l~~-~~~~~-ivs~~nGi~  103 (307)
T 3ego_A           81 QSVF---SSLER-IGKTN-ILFLQNGMG  103 (307)
T ss_dssp             HHHH---HHTTS-SCCCE-EEECCSSSH
T ss_pred             HHHH---HHhhc-CCCCe-EEEecCCcc
Confidence            8888   55654 34556 777766543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=99.10  E-value=3.6e-11  Score=99.74  Aligned_cols=111  Identities=18%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCC-CcccCCHHHHhhhCCeEEEecCCHH--HHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHG-ATVGGSPAEVIKKCTITIGMLADPA--AALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g-~~~~~s~~~~~~~advvi~~~p~~~--~~~~v~~~   76 (226)
                      +++.|||+|.||++++..|.+.|+ +|+++||++++.+++.... .....++.++++++|+||.++|..-  .....+  
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l--  195 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVI--  195 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSS--
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCC--
Confidence            368999999999999999999998 8999999999987776432 1123345566788999999998742  111111  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                       .  .+.++++.+++|++.. |..+ .+.+.++++|+..+|+
T Consensus       196 -~--~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~~G~~~~~G  232 (277)
T 3don_A          196 -S--LNRLASHTLVSDIVYN-PYKT-PILIEAEQRGNPIYNG  232 (277)
T ss_dssp             -C--CTTCCSSCEEEESCCS-SSSC-HHHHHHHHTTCCEECT
T ss_pred             -C--HHHcCCCCEEEEecCC-CCCC-HHHHHHHHCcCEEeCC
Confidence             1  2456789999999886 4333 4777788889876654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.10  E-value=6e-12  Score=105.29  Aligned_cols=92  Identities=14%  Similarity=0.069  Sum_probs=72.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC---cccCCHHHHh-hhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---TVGGSPAEVI-KKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~---~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||+|||+|.||..+|..|.++|++|++|+|+++.++.....|.   ....++.+.+ +.+|+||+|+|. .++++++  
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~-~~~~~~l--   79 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKT-HQLDAVI--   79 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCG-GGHHHHG--
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCc-cCHHHHH--
Confidence            68999999999999999999999999999999775442222232   1223444544 789999999987 6788888  


Q ss_pred             ccccccccCCCcEEEecCCC
Q 027255           77 KGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~   96 (226)
                       +.+.+.+.++++||.+.+.
T Consensus        80 -~~l~~~l~~~~~iv~~~nG   98 (294)
T 3g17_A           80 -PHLTYLAHEDTLIILAQNG   98 (294)
T ss_dssp             -GGHHHHEEEEEEEEECCSS
T ss_pred             -HHHHHhhCCCCEEEEeccC
Confidence             7788888788888888774

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=99.10  E-value=5e-10  Score=96.09  Aligned_cols=108  Identities=17%  Similarity=0.269  Sum_probs=86.9

Q ss_pred             CeEEEEecChhHHHHHHHHH-h-CCCeEE-EEcCCchhHHHHHHC-C--CcccCCHHHHhh--hCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLL-R-NGFKVT-VWNRTLSKCDELVAH-G--ATVGGSPAEVIK--KCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~-~G~~V~-~~dr~~~~~~~l~~~-g--~~~~~s~~~~~~--~advvi~~~p~~~~~~~   72 (226)
                      +||||||+|.||..++..|. + .+++|. ++|+++++++.+.+. |  ...+.+++++++  +.|+|++|+|+..+.+.
T Consensus        24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~  103 (357)
T 3ec7_A           24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHADV  103 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence            37999999999999999998 4 467755 799999999887764 6  678899999987  48999999999877766


Q ss_pred             HhhcccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcE
Q 027255           73 VVFDKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~  115 (226)
                      +.       ..++.|+ ++++.. +.++...+++.+.++++|+.+
T Consensus       104 ~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  141 (357)
T 3ec7_A          104 AV-------AALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM  141 (357)
T ss_dssp             HH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred             HH-------HHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence            55       3445665 455544 568899999999999988765

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=99.09  E-value=4.1e-11  Score=98.83  Aligned_cols=112  Identities=17%  Similarity=0.113  Sum_probs=81.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      +++.|||+|.||++++..|.+.|.+|+++||++++++++.+.++... +++++. ++|+||.++|..-.-... +..+.+
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l~-~~DiVInaTp~Gm~~~~~-l~~~~l  195 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPKS-AFDLIINATSASLHNELP-LNKEVL  195 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCSS-CCSEEEECCTTCCCCSCS-SCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHhc-cCCEEEEcccCCCCCCCC-CChHHH
Confidence            47899999999999999999999999999999999998875565443 333332 899999999864221111 111222


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+.++++.+++|+... | .+. +.+.++++|+..+|+
T Consensus       196 ~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~~G~~~~~G  230 (269)
T 3phh_A          196 KGYFKEGKLAYDLAYG-F-LTP-FLSLAKELKTPFQDG  230 (269)
T ss_dssp             HHHHHHCSEEEESCCS-S-CCH-HHHHHHHTTCCEECS
T ss_pred             HhhCCCCCEEEEeCCC-C-chH-HHHHHHHCcCEEECC
Confidence            2346678999999876 5 443 777888889887665

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=99.08  E-value=7.3e-10  Score=93.27  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=68.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHC----------CCcc-cCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH----------GATV-GGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~----------g~~~-~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.||.++|..|+.+|  ++|++|||++++++.+...          .... ..++ ++++++|+||+++|.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            69999999999999999999999  8999999999888766431          1333 4566 7788999999999985


Q ss_pred             HH-------------------HHHHhhcccccccccCCCcEEEecCC
Q 027255           68 AA-------------------ALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        68 ~~-------------------~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      ..                   +++++   +.+.+.. ++.+++..|+
T Consensus        81 ~~~~~~~g~~r~~l~~~n~~i~~~i~---~~i~~~~-~~~~ii~~tN  123 (309)
T 1hyh_A           81 KLQQDNPTGDRFAELKFTSSMVQSVG---TNLKESG-FHGVLVVISN  123 (309)
T ss_dssp             GGTC-------CTTHHHHHHHHHHHH---HHHHHTT-CCSEEEECSS
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCcEEEEEcC
Confidence            53                   45555   4555544 5666666443

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=99.08  E-value=8.6e-10  Score=93.62  Aligned_cols=112  Identities=20%  Similarity=0.267  Sum_probs=89.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC---Ce-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhh--hCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG---FK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G---~~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~--~advvi~~~p~~~~~~~   72 (226)
                      +||||||+|.||..+++.|.+..   ++ |.++||++++++++.+. |+ ..+.+.+++++  +.|+|++|+|+..+.+.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   82 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAA   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            38999999999999999998754   34 55789999999888764 76 57899999997  58999999999877766


Q ss_pred             HhhcccccccccCCCcE-EEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           73 VVFDKGGVLEQICPGKG-YIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~i-vvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +.       ..++.|+. +++-- +.++...+++.+.++++|+.+..+-
T Consensus        83 ~~-------~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~  124 (334)
T 3ohs_X           83 VM-------LCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAI  124 (334)
T ss_dssp             HH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             HH-------HHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence            55       34556664 55543 5688999999999999888766654

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=99.08  E-value=1.2e-09  Score=93.70  Aligned_cols=112  Identities=14%  Similarity=0.196  Sum_probs=88.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeE-EEEcCCchhHHHHHHC-C----CcccCCHHHHhh--hCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVAH-G----ATVGGSPAEVIK--KCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V-~~~dr~~~~~~~l~~~-g----~~~~~s~~~~~~--~advvi~~~p~~~~~~   71 (226)
                      |||||||+|.||..+++.|.+. ++++ .++|+++++.+.+.+. |    ...+.+.+++++  +.|+|++|+|+..+.+
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            4899999999999999999875 5665 5899999998887654 5    356789999987  5899999999976665


Q ss_pred             HHhhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      .+.       ..++.|+.|+.-.  +.+....+++.+.++++|+.+..+.
T Consensus        87 ~~~-------~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~~  129 (362)
T 1ydw_A           87 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGT  129 (362)
T ss_dssp             HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECC
T ss_pred             HHH-------HHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEE
Confidence            554       4566777554433  5688899999999999998877664

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=99.07  E-value=6.8e-10  Score=95.31  Aligned_cols=110  Identities=10%  Similarity=0.108  Sum_probs=87.2

Q ss_pred             eEEEEecChhHHH-HHHHHHhC-CCeEE-EEcCCchhHHHHHHC--CCcccCCHHHHhhhC--CeEEEecCCHHHHHHHh
Q 027255            2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH--GATVGGSPAEVIKKC--TITIGMLADPAAALSVV   74 (226)
Q Consensus         2 ~IgvIG~G~mG~~-~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~--g~~~~~s~~~~~~~a--dvvi~~~p~~~~~~~v~   74 (226)
                      ||||||+|.||.. ++..|.+. +++|. ++|+++++++.+.+.  +...+.++++++++.  |+|++|+|+..+.+.+.
T Consensus         7 rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~   86 (359)
T 3m2t_A            7 KVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGL   86 (359)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence            7999999999995 89999875 67765 889999999888775  567889999999865  99999999977776654


Q ss_pred             hcccccccccCCCcE-EEecC-CCCHHHHHHHHHHHHhcCCcEEec
Q 027255           75 FDKGGVLEQICPGKG-YIDMS-TVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        75 ~~~~~l~~~l~~g~i-vvd~s-t~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                             ..++.|+. +++-- +.++...+++.+.++++|+.+.-+
T Consensus        87 -------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~  125 (359)
T 3m2t_A           87 -------LAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVG  125 (359)
T ss_dssp             -------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred             -------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence                   44556664 45543 468899999999998888765444

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=99.07  E-value=8e-11  Score=96.47  Aligned_cols=109  Identities=17%  Similarity=0.112  Sum_probs=79.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      +|+|||+|.||++++..|.+.|. +|+++||++++++++.+. +.....++.++++++|+||.++|..-.-....+  . 
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i--~-  186 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV--S-  186 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC--C-
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC--C-
Confidence            58999999999999999999998 899999999998887654 323456677888999999999985311000010  0 


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEec
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEA  118 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~  118 (226)
                       .+.++++.+++|+... +   ..+.+.++++|+. .+++
T Consensus       187 -~~~l~~~~~V~Divy~-~---T~ll~~A~~~G~~~~~~G  221 (253)
T 3u62_A          187 -DDSLKNLSLVYDVIYF-D---TPLVVKARKLGVKHIIKG  221 (253)
T ss_dssp             -HHHHTTCSEEEECSSS-C---CHHHHHHHHHTCSEEECT
T ss_pred             -HHHhCcCCEEEEeeCC-C---cHHHHHHHHCCCcEEECC
Confidence             1345689999999877 2   2344555667877 5554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=99.05  E-value=1.7e-10  Score=97.36  Aligned_cols=106  Identities=13%  Similarity=0.185  Sum_probs=80.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHH-----CCC--cccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA-----HGA--TVGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~-----~g~--~~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      .+|+|||+|.||..+++.|.+.  ..+|++|||+  +.+++.+     .|+  ..+ +++++++++|+|++|+|...   
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~---  195 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTT---  195 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS---
T ss_pred             cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC---
Confidence            3799999999999999999863  4689999999  5555543     255  345 99999999999999998742   


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcC-CcEEec
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG-GHFLEA  118 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g-~~~ld~  118 (226)
                      .++   .  .+.+++|++|++.++..|.. +++...+-.+. ..|+|.
T Consensus       196 pvl---~--~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~  237 (313)
T 3hdj_A          196 PLF---A--GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEW  237 (313)
T ss_dssp             CSS---C--GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESC
T ss_pred             ccc---C--HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECC
Confidence            333   1  24578999999999988874 55555555554 578884

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=99.04  E-value=1e-09  Score=93.09  Aligned_cols=115  Identities=11%  Similarity=0.058  Sum_probs=89.1

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeE-EEEcCCchhHHHHHHC-CCc-ccCCHHHHhh--hCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVAH-GAT-VGGSPAEVIK--KCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V-~~~dr~~~~~~~l~~~-g~~-~~~s~~~~~~--~advvi~~~p~~~~~~~v~~   75 (226)
                      ||||||+|.||..++..|.+. +++| .++||++++++.+.+. |+. .+.+.+++++  +.|+|++|+|+..+.+.+. 
T Consensus         7 rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~-   85 (329)
T 3evn_A            7 RYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAK-   85 (329)
T ss_dssp             EEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHH-
T ss_pred             EEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHH-
Confidence            799999999999999999875 4554 4789999998887765 664 7899999998  7899999999977766554 


Q ss_pred             cccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           76 DKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        76 ~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                            ..++.|+ ++++-. +.++...+++.+.++++|+.+..+.....
T Consensus        86 ------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~  129 (329)
T 3evn_A           86 ------AALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVF  129 (329)
T ss_dssp             ------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             ------HHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccC
Confidence                  3455665 455544 56899999999999999998877765543

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.03  E-value=3.5e-10  Score=100.14  Aligned_cols=99  Identities=17%  Similarity=0.100  Sum_probs=80.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|+|||+|.||+.+|+.+...|.+|++||+++.+.......|+.. .+++++++++|+|++++.+.    .++.  ...
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~----~lI~--~~~  330 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNV----DVIK--LEH  330 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSS----SSBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChh----hhcC--HHH
Confidence            4799999999999999999999999999999998765555667754 58999999999999996332    2221  134


Q ss_pred             ccccCCCcEEEecCCCCHH-HHHHHHH
Q 027255           81 LEQICPGKGYIDMSTVDHE-TSIKISR  106 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~-~~~~l~~  106 (226)
                      ++.+++|.++||+++..++ ....+.+
T Consensus       331 l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          331 LLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             HTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HhhcCCCcEEEEeCCCCccccchhhhc
Confidence            5678999999999998883 7777766

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=99.01  E-value=2.2e-09  Score=92.95  Aligned_cols=115  Identities=13%  Similarity=0.171  Sum_probs=92.0

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhh--CCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLG-IMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKK--CTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G-~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~   74 (226)
                      |||||||+| .||..++..|.+. +++|. ++|+++++.+.+.+. |+..+.+.++++++  .|+|++|+|+..+.+.+.
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~   82 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVV   82 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHH
Confidence            489999999 9999999999875 56654 789999998887654 88889999999985  899999999977766554


Q ss_pred             hcccccccccCCCcEE-EecC-CCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           75 FDKGGVLEQICPGKGY-IDMS-TVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        75 ~~~~~l~~~l~~g~iv-vd~s-t~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                             ..+..|+.| ++-. +.++...+++.+.++++|+.+.-+....
T Consensus        83 -------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R  125 (387)
T 3moi_A           83 -------QASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRS  125 (387)
T ss_dssp             -------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGG
T ss_pred             -------HHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccc
Confidence                   445566654 4433 4688999999999999998877665443

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=99.00  E-value=1.3e-09  Score=95.83  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=88.2

Q ss_pred             CeEEEEecChhHH-HHHHHHHhC-CCeE-EEEcCCchhHHHHHHC-CCc-----ccCCHHHHhh--hCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGK-AISMNLLRN-GFKV-TVWNRTLSKCDELVAH-GAT-----VGGSPAEVIK--KCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~~-G~~V-~~~dr~~~~~~~l~~~-g~~-----~~~s~~~~~~--~advvi~~~p~~~~   69 (226)
                      +||||||+|.||. .++..|.+. +++| .++|+++++.+.+.+. |+.     .+.+.+++++  +.|+|++|+|+..+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence            4799999999997 899999875 5674 5899999998887664 654     5788999987  68999999999777


Q ss_pred             HHHHhhcccccccccCCCc-EEEec-CCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           70 ALSVVFDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~-ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      .+.+.       ..++.|+ ++++. .+.++...+++.+.++++|+.+..+..
T Consensus       164 ~~~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~  209 (433)
T 1h6d_A          164 AEFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYR  209 (433)
T ss_dssp             HHHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred             HHHHH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEec
Confidence            66555       3455676 45553 356788999999999988887766643

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.00  E-value=9.2e-10  Score=92.99  Aligned_cols=101  Identities=13%  Similarity=0.079  Sum_probs=72.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHH----H------C--CCcccCCHHHHhhhCCeEEEec---
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----A------H--GATVGGSPAEVIKKCTITIGML---   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~----~------~--g~~~~~s~~~~~~~advvi~~~---   64 (226)
                      |||+|||+|.||.++|..|+.+|+ +|++||+++++++...    .      .  .+..+.+. ++++++|+||+++   
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~p   83 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASIP   83 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence            589999999999999999999998 9999999998776531    1      1  23334566 7789999999999   


Q ss_pred             -----------CCH-HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHH
Q 027255           65 -----------ADP-AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISR  106 (226)
Q Consensus        65 -----------p~~-~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~  106 (226)
                                 |.. ...++++   +.+.+.. ++.+++..|+..-.....+.+
T Consensus        84 ~~~g~~r~d~~~~~~~i~~~i~---~~i~~~~-~~~iii~~sNp~~~~~~~~~~  133 (317)
T 2ewd_A           84 GRPKDDRSELLFGNARILDSVA---EGVKKYC-PNAFVICITNPLDVMVSHFQK  133 (317)
T ss_dssp             SCCSSCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECCSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHhhHHHHHHHH---HHHHHHC-CCcEEEEeCChHHHHHHHHHH
Confidence                       322 2355666   5565654 688888777643333334443

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=99.00  E-value=1.4e-09  Score=91.48  Aligned_cols=107  Identities=11%  Similarity=0.123  Sum_probs=74.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHCCCcc--cCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~g~~~--~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      +||+|||+|.||+.+++.|.+. ++++. ++|+++++++.   .|+..  ..++.+. .++|+|++|+|+..+.+.+.  
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~~--   83 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTAL--   83 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHHH--
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHHH--
Confidence            3799999999999999999874 67876 79999987765   55542  3444444 67999999999877665554  


Q ss_pred             ccccccccCCCcEEEecCCC---CHHHHHHHHHHHHhcCCcEEec
Q 027255           77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~---~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                           ..++.|+.+++.+..   .+...+++.+.+++.|+.++-+
T Consensus        84 -----~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~  123 (304)
T 3bio_A           84 -----EILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIA  123 (304)
T ss_dssp             -----HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECS
T ss_pred             -----HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence                 456678888887643   5677888888888888654333

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=99.00  E-value=8.4e-10  Score=94.13  Aligned_cols=113  Identities=12%  Similarity=0.136  Sum_probs=86.5

Q ss_pred             CeEEEEecChhHHHHHHH-H-Hh-CCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhh--CCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMN-L-LR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKK--CTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~-l-~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v   73 (226)
                      +||||||+|.||..+... + .. .+++|. ++|+++++.+.+.+. ++..++++++++++  .|+|++|+|+..+.+.+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA   82 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHHH
Confidence            489999999999974433 4 32 367766 899998877544443 67788999999986  89999999998777666


Q ss_pred             hhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      .       ..++.|+.|+.-.  +.++...+++.+.++++|+.+.-+..
T Consensus        83 ~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~  124 (345)
T 3f4l_A           83 K-------RALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQN  124 (345)
T ss_dssp             H-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred             H-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence            5       4556777766655  56889999999999999987765543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.99  E-value=3.6e-10  Score=97.31  Aligned_cols=92  Identities=22%  Similarity=0.262  Sum_probs=71.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC-------------------------CHHHHhhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-------------------------SPAEVIKK   56 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-------------------------s~~~~~~~   56 (226)
                      ||+|||+|.||..+++.+...|.+|++|||++++.+.+.+.|+++..                         ++++++++
T Consensus       186 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~  265 (381)
T 3p2y_A          186 SALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITK  265 (381)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhc
Confidence            79999999999999999999999999999999999998887765432                         45678899


Q ss_pred             CCeEEEecCCHH-HHHHHhhcccccccccCCCcEEEecCC
Q 027255           57 CTITIGMLADPA-AALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        57 advvi~~~p~~~-~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      +|+||.++..+. ....++ . ++..+.+++|.+|||++.
T Consensus       266 aDIVI~tv~iPg~~ap~Lv-t-~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          266 FDIVITTALVPGRPAPRLV-T-AAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             CSEEEECCCCTTSCCCCCB-C-HHHHHTSCTTCEEEETTG
T ss_pred             CCEEEECCCCCCcccceee-c-HHHHhcCCCCcEEEEEeC
Confidence            999999862221 111111 1 345577889999999974

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.99  E-value=8.6e-10  Score=97.96  Aligned_cols=101  Identities=16%  Similarity=0.067  Sum_probs=78.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|+|||+|.||+.+|+.+...|.+|++|||++.+.......|... .+++++++++|+|++++.+.    .++.  ...
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~----~lI~--~~~  350 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNY----HVIN--HDH  350 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSS----CSBC--HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCcc----cccC--HHH
Confidence            4799999999999999999999999999999998764445557664 47999999999999998432    2221  234


Q ss_pred             ccccCCCcEEEecCCCCHH-HHHHHHHHHH
Q 027255           81 LEQICPGKGYIDMSTVDHE-TSIKISRAIT  109 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~-~~~~l~~~~~  109 (226)
                      ++.+++|.+|||+++.... ....+ +.+.
T Consensus       351 l~~MK~gAilINvgrg~veID~~aL-~AL~  379 (494)
T 3d64_A          351 MKAMRHNAIVCNIGHFDSEIDVAST-RQYQ  379 (494)
T ss_dssp             HHHCCTTEEEEECSSSSCSBCCGGG-TTSE
T ss_pred             HhhCCCCcEEEEcCCCcchhchHHH-Hhhh
Confidence            5778999999999998763 55555 4443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.99  E-value=5.8e-10  Score=96.72  Aligned_cols=94  Identities=20%  Similarity=0.234  Sum_probs=72.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-----------------------------CCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----------------------------GSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-----------------------------~s~~   51 (226)
                      .||+|||+|.+|..+++.+...|.+|++||+++++.+.+.+.|..+.                             .+++
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~  270 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVA  270 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHH
Confidence            37999999999999999999999999999999999888887776432                             1567


Q ss_pred             HHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255           52 EVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        52 ~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      ++++++|+||.|+..+......++. ++..+.+++|.+|||++.
T Consensus       271 e~l~~aDVVI~tvlipg~~ap~Lvt-~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          271 EHIAKQDIVITTALIPGRPAPRLVT-REMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHTCSEEEECCCCSSSCCCCCBC-HHHHTTSCTTCEEEETTG
T ss_pred             HHhcCCCEEEECCcCCCCCCCEEec-HHHHhcCCCCCEEEEEeC
Confidence            7889999999986322111111111 345578899999999984

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.99  E-value=5.9e-09  Score=77.47  Aligned_cols=108  Identities=17%  Similarity=0.201  Sum_probs=74.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~----~~~advvi~~~p~~~~~~~v   73 (226)
                      +|.|+|+|.+|..+|+.|.+.|++|+++|+++++++.+.+.|+.+.    .+.+.+    ++++|+|++++|++.....+
T Consensus         9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~   88 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEI   88 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHHH
Confidence            6999999999999999999999999999999999999988887542    222221    35799999999997655544


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +   . ....+.++..+|-.. ..+...    +.+.+.|+..+=.
T Consensus        89 ~---~-~a~~~~~~~~iiar~-~~~~~~----~~l~~~G~d~vi~  124 (140)
T 3fwz_A           89 V---A-SARAKNPDIEIIARA-HYDDEV----AYITERGANQVVM  124 (140)
T ss_dssp             H---H-HHHHHCSSSEEEEEE-SSHHHH----HHHHHTTCSEEEE
T ss_pred             H---H-HHHHHCCCCeEEEEE-CCHHHH----HHHHHCCCCEEEC
Confidence            4   2 122233443333322 334433    4455667765443

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.98  E-value=9.5e-10  Score=95.94  Aligned_cols=91  Identities=14%  Similarity=0.139  Sum_probs=74.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|+|||+|.+|+.+|+.|...|.+|++||+++.+.......|... .+++++++++|+|+++..+..    ++.  ...
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~~----iI~--~e~  284 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGNDD----IIT--SEH  284 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSC----SBC--TTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCcC----ccC--HHH
Confidence            4799999999999999999999999999999998877666777764 489999999999998664422    231  245


Q ss_pred             ccccCCCcEEEecCCCCH
Q 027255           81 LEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~   98 (226)
                      ++.+++|.+|||++...+
T Consensus       285 l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          285 FPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             GGGCCTTEEEEECSSSGG
T ss_pred             HhhcCCCcEEEEeCCCCC
Confidence            677899999999997654

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.98  E-value=3.6e-09  Score=90.97  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=86.8

Q ss_pred             eEEEEecChhHHH-HHHHHHhC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhc
Q 027255            2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvIG~G~mG~~-~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~   76 (226)
                      ||||||+|.||.. .+..+.+. +++|. ++|++++++.. ...+...+.+.+++++  +.|+|++|+|+..+.+.+.  
T Consensus         9 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~--   85 (364)
T 3e82_A            9 NIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLAR--   85 (364)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHH--
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHH--
Confidence            7999999999997 67777664 67764 88999987652 1236778899999998  6899999999987776665  


Q ss_pred             ccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           77 KGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                           ..++.|+.|+.-.  +.++...+++.+.++++|+.+.-+..
T Consensus        86 -----~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~  126 (364)
T 3e82_A           86 -----LALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHN  126 (364)
T ss_dssp             -----HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred             -----HHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEee
Confidence                 4556777666555  56889999999999999987765544

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.97  E-value=1.2e-09  Score=92.44  Aligned_cols=90  Identities=21%  Similarity=0.365  Sum_probs=65.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHH---C------CCcc-cCCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA---H------GATV-GGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~---~------g~~~-~~s~~~~~~~advvi~~~p~~~   68 (226)
                      |||+|||+|.||.++|..|+.+|+  +|++||+++++++.+..   .      ...+ ..+ .++++++|+||+++|.+.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            899999999999999999999999  99999999988776542   1      1222 234 466789999999998633


Q ss_pred             ---------------HHHHHhhcccccccccCCCcEEEecCC
Q 027255           69 ---------------AALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        69 ---------------~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                                     .+++++   +.+.+.. ++.++|..|+
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-~~~~ii~~tN  117 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIA---RNVSKYA-PDSIVIVVTN  117 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHH---HHHHhhC-CCeEEEEeCC
Confidence                           245555   4555554 6666666543

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.96  E-value=4.2e-10  Score=84.04  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=79.8

Q ss_pred             eEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      +|+|||+    |.||..++++|.+.||+  +|++||.+ .+++  .|.....|++++.+..|++++++|. +.+.+++  
T Consensus        15 ~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~--   87 (140)
T 1iuk_A           15 TIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPP-SALMDHL--   87 (140)
T ss_dssp             EEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH--
T ss_pred             EEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH--
Confidence            7999999    89999999999999997  67777764 2222  4788888999998889999999988 6777777  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                       +++.+.- .+.+|+..++.    .+++.+.++++|++++-
T Consensus        88 -~~~~~~g-i~~i~~~~g~~----~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           88 -PEVLALR-PGLVWLQSGIR----HPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             -HHHHHHC-CSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred             -HHHHHcC-CCEEEEcCCcC----HHHHHHHHHHcCCEEEc
Confidence             4444432 34567766554    36788888899999885

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.94  E-value=5.1e-09  Score=89.52  Aligned_cols=110  Identities=16%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             eEEEEecChhHHH-HHHHHHhC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHhhc
Q 027255            2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvIG~G~mG~~-~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~~~   76 (226)
                      ||||||+|.||.. ++..+.+. +++|. ++|+++++.+. ...+...+.+.++++++  .|+|++|+|+..+.+.+.  
T Consensus         9 rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~--   85 (352)
T 3kux_A            9 KVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQ--   85 (352)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHH--
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHH--
Confidence            7999999999997 77777765 67764 88999988762 11267788999999986  899999999987776655  


Q ss_pred             ccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           77 KGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        77 ~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                           ..++.|+ ++++.. +.++...+++.+.++++|+.+.-+.
T Consensus        86 -----~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~  125 (352)
T 3kux_A           86 -----SALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFH  125 (352)
T ss_dssp             -----HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECC
T ss_pred             -----HHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEe
Confidence                 4455676 555554 5789999999999999998766554

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.94  E-value=5.9e-09  Score=90.64  Aligned_cols=110  Identities=8%  Similarity=0.019  Sum_probs=87.3

Q ss_pred             eEEEEecCh---hHHHHHHHHHhCC-CeEE--EEcCCchhHHHHHH-CCC---cccCCHHHHhhh-------CCeEEEec
Q 027255            2 EVGFLGLGI---MGKAISMNLLRNG-FKVT--VWNRTLSKCDELVA-HGA---TVGGSPAEVIKK-------CTITIGML   64 (226)
Q Consensus         2 ~IgvIG~G~---mG~~~A~~l~~~G-~~V~--~~dr~~~~~~~l~~-~g~---~~~~s~~~~~~~-------advvi~~~   64 (226)
                      ||||||+|.   ||...+..+...+ +++.  ++|+++++.+.+.+ .|+   ..++++++++++       .|+|++|+
T Consensus        14 rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~t   93 (398)
T 3dty_A           14 RWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIAT   93 (398)
T ss_dssp             EEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEES
T ss_pred             eEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEECC
Confidence            799999999   9999999888765 6765  68999999988766 477   678999999976       89999999


Q ss_pred             CCHHHHHHHhhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEec
Q 027255           65 ADPAAALSVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        65 p~~~~~~~v~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      |+..+.+.+.       ..++.|+.|+.--  +.+.+..+++.+.++++|+.+.-+
T Consensus        94 p~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~  142 (398)
T 3dty_A           94 PNGTHYSITK-------AALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVT  142 (398)
T ss_dssp             CGGGHHHHHH-------HHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9987776655       4455676554432  467889999999999888765544

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.94  E-value=6.6e-09  Score=91.63  Aligned_cols=109  Identities=14%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeE-EEEcCCchhHHHHHH----CC---CcccC----CHHHHhh--hCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVA----HG---ATVGG----SPAEVIK--KCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V-~~~dr~~~~~~~l~~----~g---~~~~~----s~~~~~~--~advvi~~~p   65 (226)
                      +||||||+|.||..++..|.+. +++| .++|+++++++.+.+    .|   ...+.    +.+++++  +.|+|++|+|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp  100 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP  100 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence            4799999999999999999875 6775 588999999888764    35   46677    9999987  5899999999


Q ss_pred             CHHHHHHHhhcccccccccCCCcEE-Eec-CCCCHHHHHHHHHHHHhcCCcEE
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGY-IDM-STVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~iv-vd~-st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      +..+.+.++       ..++.|+.| ++. .+.+++..+++.+.++++|+.+.
T Consensus       101 ~~~h~~~~~-------~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~  146 (444)
T 2ixa_A          101 WEWHHEHGV-------AAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM  146 (444)
T ss_dssp             GGGHHHHHH-------HHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred             cHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            987776665       445567654 443 24578889999998888876543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.93  E-value=4.2e-09  Score=79.59  Aligned_cols=74  Identities=16%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-HCCCccc-C---CHH---HH-hhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVG-G---SPA---EV-IKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~-~---s~~---~~-~~~advvi~~~p~~~~~~   71 (226)
                      ++|.|+|+|.+|..+++.|.+.|++|++++|++++.+.+. ..|.... .   +.+   ++ ++++|+||++++++....
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~   99 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTNF   99 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHH
Confidence            5799999999999999999999999999999999988776 5565332 1   222   22 567999999999866554


Q ss_pred             HHh
Q 027255           72 SVV   74 (226)
Q Consensus        72 ~v~   74 (226)
                      .+.
T Consensus       100 ~~~  102 (155)
T 2g1u_A          100 FIS  102 (155)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.92  E-value=1.2e-08  Score=75.62  Aligned_cols=107  Identities=14%  Similarity=0.160  Sum_probs=71.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc----cCCHHHH----hhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGSPAEV----IKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~----~~s~~~~----~~~advvi~~~p~~~~~~~v   73 (226)
                      +|.|+|+|.+|+.+|+.|.+.|++|+++|+++++.+.+.+.+..+    ..+++.+    ++++|+||+++|++.....+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~   87 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFNLKI   87 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHHHHH
Confidence            699999999999999999999999999999999999998877643    1222222    35789999999975543333


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .   . ....+....+++-.++.  ...    +.+.+.|+..+=.
T Consensus        88 ~---~-~a~~~~~~~iia~~~~~--~~~----~~l~~~G~~~vi~  122 (141)
T 3llv_A           88 L---K-ALRSVSDVYAIVRVSSP--KKK----EEFEEAGANLVVL  122 (141)
T ss_dssp             H---H-HHHHHCCCCEEEEESCG--GGH----HHHHHTTCSEEEE
T ss_pred             H---H-HHHHhCCceEEEEEcCh--hHH----HHHHHcCCCEEEC
Confidence            3   1 22223344555544332  222    3345567664433

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.91  E-value=1.4e-09  Score=93.47  Aligned_cols=131  Identities=18%  Similarity=0.230  Sum_probs=92.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC----Ccc--cCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG----ATV--GGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g----~~~--~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      |||.|||+|.+|+.+++.|.+ .++|+++|++.++++.+.+..    +.+  ..++.++++++|+|+.|+|.... ..++
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~-~~v~   94 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLG-FKSI   94 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGH-HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCccc-chHH
Confidence            899999999999999999975 489999999999988876542    111  23455677899999999987432 3343


Q ss_pred             hcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE-ecCCCCChHhh---------ccCcEEEEeccCC
Q 027255           75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPA---------ETGQLVILSAGEK  140 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l-d~pv~g~~~~a---------~~g~~~~~~gg~~  140 (226)
                            ..++..|+.++|+|-. +....++.+.++++|+.++ ++.+.-|....         ..-...+++||..
T Consensus        95 ------~~~~~~g~~yvD~s~~-~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~a~~~~~~~~~~~~~~~~gg~p  163 (365)
T 3abi_A           95 ------KAAIKSKVDMVDVSFM-PENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQELDLKEGYIYVGGLP  163 (365)
T ss_dssp             ------HHHHHHTCEEEECCCC-SSCGGGGHHHHHHTTCEEECCCBTTTBHHHHHHHHHHHHSCEEEEEEEEEEEE
T ss_pred             ------HHHHhcCcceEeeecc-chhhhhhhhhhccCCceeeecCCCCCchHHHHHHHHHHhccccceeEEecccC
Confidence                  2456688999998744 3455677888888888765 44555544331         1223446777754

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.91  E-value=6.4e-09  Score=88.66  Aligned_cols=112  Identities=14%  Similarity=0.119  Sum_probs=85.2

Q ss_pred             CeEEEEecChhHHH-HHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhhh--CCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~~--advvi~~~p~~~~~~~v   73 (226)
                      +||||||+|.||.. ++..+.+. +.+|. ++|+++++++++++. |+ ..++|.++++++  .|+|++|+|+..+.+.+
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~~  103 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWS  103 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHHHH
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHHHH
Confidence            38999999999975 56667664 56755 789999999988765 76 468999999865  79999999998777766


Q ss_pred             hhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           74 VFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +       ..++.|+.|+.--  +.+..+.+++.+.+++.|+.+.-+-
T Consensus       104 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~  144 (350)
T 4had_A          104 I-------KAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAY  144 (350)
T ss_dssp             H-------HHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECC
T ss_pred             H-------HHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEee
Confidence            5       4455666554433  3567888889888888887665553

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.91  E-value=9.6e-09  Score=89.89  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=86.2

Q ss_pred             eEEEEecCh---hHHHHHHHHHhCC-CeEE--EEcCCchhHHHHHHC-CC---cccCCHHHHhhh-------CCeEEEec
Q 027255            2 EVGFLGLGI---MGKAISMNLLRNG-FKVT--VWNRTLSKCDELVAH-GA---TVGGSPAEVIKK-------CTITIGML   64 (226)
Q Consensus         2 ~IgvIG~G~---mG~~~A~~l~~~G-~~V~--~~dr~~~~~~~l~~~-g~---~~~~s~~~~~~~-------advvi~~~   64 (226)
                      ||||||+|.   ||...+..+...+ +++.  ++|+++++++++.+. |+   ..++++++++++       .|+|++|+
T Consensus        39 rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~t  118 (417)
T 3v5n_A           39 RLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIVT  118 (417)
T ss_dssp             EEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEECS
T ss_pred             eEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEECC
Confidence            799999999   9999999888765 6764  689999999887764 77   578999999986       89999999


Q ss_pred             CCHHHHHHHhhcccccccccCCCcEE-EecC-CCCHHHHHHHHHHHHhcCCcEEec
Q 027255           65 ADPAAALSVVFDKGGVLEQICPGKGY-IDMS-TVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        65 p~~~~~~~v~~~~~~l~~~l~~g~iv-vd~s-t~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      |+..+.+.+.       ..++.|+.| ++-- +.+.+..+++.+.++++|+.+.-+
T Consensus       119 p~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~  167 (417)
T 3v5n_A          119 PNHVHYAAAK-------EFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLT  167 (417)
T ss_dssp             CTTSHHHHHH-------HHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CcHHHHHHHH-------HHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence            9977766554       455667654 5543 468889999999998888765444

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.90  E-value=8.4e-09  Score=87.82  Aligned_cols=112  Identities=19%  Similarity=0.145  Sum_probs=87.9

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhC--CCeE-EEEcCCchhHHHHHHC-CC-cccCCHHHHhh--hCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLG-IMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G-~mG~~~A~~l~~~--G~~V-~~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~--~advvi~~~p~~~~~~~   72 (226)
                      +||||||+| .||...+..|.+.  ++++ .++|+++++++.+.+. |+ ..+.+.+++++  +.|+|++|+|+..+.+.
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   98 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF   98 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence            379999999 8999999999876  4665 5889999999887764 65 67899999987  48999999999777655


Q ss_pred             HhhcccccccccCCCcE-EEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           73 VVFDKGGVLEQICPGKG-YIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~i-vvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +.       ..++.|+. +++-- +.+....+++.+.++++|+.+.-+-
T Consensus        99 ~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~  140 (340)
T 1zh8_A           99 IE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAE  140 (340)
T ss_dssp             HH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEEC
T ss_pred             HH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence            54       44556664 45532 3588999999999999888766553

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.90  E-value=9.1e-09  Score=86.63  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=53.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHH---C-------C--CcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA---H-------G--ATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~---~-------g--~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||.++|..|+.+  |++|++||+++++++.+..   .       .  +..+.+.++ ++++|+||+++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            8999999999999999999985  7999999999988775431   1       1  233466766 8999999999975


Q ss_pred             H
Q 027255           67 P   67 (226)
Q Consensus        67 ~   67 (226)
                      +
T Consensus        80 p   80 (310)
T 1guz_A           80 P   80 (310)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.90  E-value=6.7e-09  Score=92.49  Aligned_cols=112  Identities=13%  Similarity=0.164  Sum_probs=89.2

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhC--CCeE-EEEcCCchhHHHHHHC-CCc---ccCCHHHHhh--hCCeEEEecCCH
Q 027255            1 MEVGFLGL----GIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVAH-GAT---VGGSPAEVIK--KCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~----G~mG~~~A~~l~~~--G~~V-~~~dr~~~~~~~l~~~-g~~---~~~s~~~~~~--~advvi~~~p~~   67 (226)
                      +||||||+    |.||..++..|.+.  +++| .++|+++++++.+.+. |+.   .+.+++++++  +.|+|++|+|+.
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~  119 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP  119 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcH
Confidence            37999999    99999999999985  6775 5899999999887764 664   7899999986  589999999998


Q ss_pred             HHHHHHhhcccccccccCCC------c-EEEec-CCCCHHHHHHHHHHHHhcC-CcEEecC
Q 027255           68 AAALSVVFDKGGVLEQICPG------K-GYIDM-STVDHETSIKISRAITSKG-GHFLEAP  119 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g------~-ivvd~-st~~~~~~~~l~~~~~~~g-~~~ld~p  119 (226)
                      .+.+.++       ..+..|      + ++++. .+.++...+++.+.++++| +.+.-+.
T Consensus       120 ~H~~~~~-------~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~v~~  173 (479)
T 2nvw_A          120 EHYEVVK-------NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICL  173 (479)
T ss_dssp             HHHHHHH-------HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEEC
T ss_pred             HHHHHHH-------HHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence            7776665       334455      4 67776 3568899999999999988 7665543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.90  E-value=7.7e-10  Score=91.94  Aligned_cols=112  Identities=14%  Similarity=0.148  Sum_probs=79.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-C---CcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G---ATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g---~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      +++.|+|+|.||++++..|.+.|. +|+++||++++.+++.+. +   -....+++++..++|+||.++|..-..+...+
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~~l  206 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAI  206 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC----CSC
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCCCC
Confidence            368999999999999999999996 899999999998887654 1   11223455555789999999997543222111


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEec
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEA  118 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~  118 (226)
                      .    .+.++++.+++|+... |..+. +.+.++++|+. .+|+
T Consensus       207 ~----~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~G  244 (281)
T 3o8q_A          207 D----PVIFSSRSVCYDMMYG-KGYTV-FNQWARQHGCAQAIDG  244 (281)
T ss_dssp             C----GGGEEEEEEEEESCCC-SSCCH-HHHHHHHTTCSEEECT
T ss_pred             C----HHHhCcCCEEEEecCC-CccCH-HHHHHHHCCCCEEECc
Confidence            1    1345678999999875 43343 44677788887 6654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.89  E-value=4.6e-09  Score=93.51  Aligned_cols=91  Identities=15%  Similarity=0.139  Sum_probs=76.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|+|||+|.+|..+|+.+...|++|+++|+++.+.+.....|+.. .+++++++++|+|+.++++...+.      ...
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~------~~~  347 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIM------LEH  347 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBC------HHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHH------HHH
Confidence            4799999999999999999999999999999999988888888864 578899999999999997754222      133


Q ss_pred             ccccCCCcEEEecCCCCH
Q 027255           81 LEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~   98 (226)
                      ++.++++.++++.+....
T Consensus       348 l~~mk~ggilvnvG~~~~  365 (494)
T 3ce6_A          348 IKAMKDHAILGNIGHFDN  365 (494)
T ss_dssp             HHHSCTTCEEEECSSSGG
T ss_pred             HHhcCCCcEEEEeCCCCC
Confidence            467889999999988653

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.88  E-value=1.7e-08  Score=86.73  Aligned_cols=112  Identities=16%  Similarity=0.186  Sum_probs=87.9

Q ss_pred             CeEEEEecChhHH-HHHHHHHhCCCeE-EEEcCCchhHHHHHHC-C-CcccCCHHHHhhh--CCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGK-AISMNLLRNGFKV-TVWNRTLSKCDELVAH-G-ATVGGSPAEVIKK--CTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~~G~~V-~~~dr~~~~~~~l~~~-g-~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~   74 (226)
                      +||||||+|.++. .++..+...+++| .++|+++++++.+.+. | ...+.+.++++++  .|+|++|+|+..+.+.+.
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~  106 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAI  106 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence            3799999999995 5777777788885 4889999999888765 4 6778999999975  899999999977776655


Q ss_pred             hcccccccccCCCcE-EEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           75 FDKGGVLEQICPGKG-YIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        75 ~~~~~l~~~l~~g~i-vvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                             ..++.|+. +++-- +.+.+..+++.+.++++|+.+.-+-
T Consensus       107 -------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~  146 (361)
T 3u3x_A          107 -------RAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILY  146 (361)
T ss_dssp             -------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEec
Confidence                   44556664 45543 4688999999999999888765543

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.88  E-value=5e-09  Score=92.27  Aligned_cols=110  Identities=12%  Similarity=0.151  Sum_probs=88.7

Q ss_pred             eEEEEec----ChhHHHHHHHHHhC--CCeE-EEEcCCchhHHHHHHC-CCc---ccCCHHHHhh--hCCeEEEecCCHH
Q 027255            2 EVGFLGL----GIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVAH-GAT---VGGSPAEVIK--KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~----G~mG~~~A~~l~~~--G~~V-~~~dr~~~~~~~l~~~-g~~---~~~s~~~~~~--~advvi~~~p~~~   68 (226)
                      ||||||+    |.||..++..|.+.  +++| .++|+++++.+.+.+. |+.   .+.+.+++++  +.|+|++|+|+..
T Consensus        22 rvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~  101 (438)
T 3btv_A           22 RVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVAS  101 (438)
T ss_dssp             EEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHHH
T ss_pred             EEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcHH
Confidence            7999999    99999999999986  6775 5899999998887764 664   7889999987  5899999999977


Q ss_pred             HHHHHhhcccccccccCCC-------cEEEec-CCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           69 AALSVVFDKGGVLEQICPG-------KGYIDM-STVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g-------~ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +.+.+.       ..++.|       .++++. .+.++...+++.+.++++|+.+..+
T Consensus       102 H~~~~~-------~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~  152 (438)
T 3btv_A          102 HYEVVM-------PLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIIS  152 (438)
T ss_dssp             HHHHHH-------HHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHHH-------HHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEe
Confidence            766665       233344       466774 4568899999999999999877666

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.87  E-value=9.4e-09  Score=89.64  Aligned_cols=111  Identities=17%  Similarity=0.253  Sum_probs=86.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhC---------CCeE-EEEcCCchhHHHHHHC-CC-cccCCHHHHhh--hCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN---------GFKV-TVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~---------G~~V-~~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~--~advvi~~~p~   66 (226)
                      +||||||+|.||...+..+.+.         +.+| .++|+++++++++.+. |+ ..+++.+++++  +.|+|++|+|+
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            3799999999999999888764         3454 4789999999988765 66 47899999987  47999999999


Q ss_pred             HHHHHHHhhcccccccccCCCcEE-EecC-CCCHHHHHHHHHHHHhcCCcEEec
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGY-IDMS-TVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~iv-vd~s-t~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ..+.+.++       ..++.|+.| ++-- +.+....++|.+.++++|+.+.-+
T Consensus       107 ~~H~~~~~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~  153 (412)
T 4gqa_A          107 HLHYTMAM-------AAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVA  153 (412)
T ss_dssp             GGHHHHHH-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHH-------HHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeec
Confidence            88777665       445567655 4433 357889999999988888765444

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.86  E-value=5.2e-09  Score=78.43  Aligned_cols=102  Identities=13%  Similarity=0.164  Sum_probs=76.4

Q ss_pred             eEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      +|+|||+    |.+|..++++|.+.||+  +|++|+.. +++  .|.....|++++.+..|++++++|. +.+.+++   
T Consensus        24 ~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv---   94 (144)
T 2d59_A           24 KIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV---   94 (144)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH---
T ss_pred             EEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH---
Confidence            6999999    79999999999999998  45555543 112  4788888999998889999999988 6677776   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      +++.+.- .+.+++..++.    .+++.+.++++|++++-
T Consensus        95 ~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A           95 EQAIKKG-AKVVWFQYNTY----NREASKKADEAGLIIVA  129 (144)
T ss_dssp             HHHHHHT-CSEEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred             HHHHHcC-CCEEEECCCch----HHHHHHHHHHcCCEEEc
Confidence            4444322 33555554443    57788888899999874

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.86  E-value=1.8e-09  Score=92.75  Aligned_cols=106  Identities=22%  Similarity=0.251  Sum_probs=74.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhh-hCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ++|+|+|+|+||..+|+.|.+.|++|+++|+++++++++.+. ++... +..+++. +||+++.|....     ++..  
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~~-----~I~~--  245 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGA-----VLND--  245 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSC-----CBST--
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchHH-----HhCH--
Confidence            479999999999999999999999999999999988877664 66554 4445554 899999886332     2211  


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      ...+.+  +..+|..++..|.+.++..+.+.++|+.|+
T Consensus       246 ~~~~~l--g~~iV~e~An~p~t~~ea~~~L~~~Gi~~~  281 (364)
T 1leh_A          246 FTIPQL--KAKVIAGSADNQLKDPRHGKYLHELGIVYA  281 (364)
T ss_dssp             THHHHC--CCSEECCSCSCCBSSHHHHHHHHHHTCEEC
T ss_pred             HHHHhC--CCcEEEeCCCCCcccHHHHHHHHhCCCEEe
Confidence            122334  333455555555554456778888888654

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=98.85  E-value=1.6e-09  Score=89.64  Aligned_cols=110  Identities=17%  Similarity=0.159  Sum_probs=80.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHH---HHhhc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAAL---SVVFD   76 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~---~v~~~   76 (226)
                      +|.|||+|.||++++..|.+.|. +|++|||++++++.+.+. +.....+..  ..++|+||.++|......   +..  
T Consensus       121 ~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~~--  196 (271)
T 1npy_A          121 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL--  196 (271)
T ss_dssp             CEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC--
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCCC--
Confidence            68999999999999999999997 799999999999888764 443332332  467999999999753211   111  


Q ss_pred             cccc-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           77 KGGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        77 ~~~l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                        .+ ...++++.+++|+.. .|..+ .+.+.++++|+.++|+.
T Consensus       197 --~~~~~~l~~~~~v~DlvY-~P~~T-~ll~~A~~~G~~~i~Gl  236 (271)
T 1npy_A          197 --AFPKAFIDNASVAFDVVA-MPVET-PFIRYAQARGKQTISGA  236 (271)
T ss_dssp             --SSCHHHHHHCSEEEECCC-SSSSC-HHHHHHHHTTCEEECHH
T ss_pred             --CCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCCCEEECCH
Confidence              01 123457889999986 44444 57777888899988774

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.84  E-value=3.6e-08  Score=84.78  Aligned_cols=111  Identities=12%  Similarity=0.091  Sum_probs=84.3

Q ss_pred             eEEEEecChhHHHHHHHHHh--------CCCe-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhhh--CCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR--------NGFK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~--------~G~~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~~--advvi~~~p~~~   68 (226)
                      ||||||+|.||+..+..+..        .+.+ |.++|+++++++++.+. |+ ..+++.++++++  .|+|++|+|+..
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~~  106 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQF  106 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGGG
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChHH
Confidence            69999999999988877654        2456 45789999999988765 66 478999999874  799999999988


Q ss_pred             HHHHHhhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +.+.++       ..++.|+.|+.--  +.+..+.+++.+.++++|+.+.-+-
T Consensus       107 H~~~a~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~  152 (393)
T 4fb5_A          107 HAEMAI-------AALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGY  152 (393)
T ss_dssp             HHHHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECC
T ss_pred             HHHHHH-------HHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCcccccc
Confidence            877665       4555676554433  4678899999999999887665553

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.84  E-value=5.8e-09  Score=89.98  Aligned_cols=110  Identities=13%  Similarity=0.182  Sum_probs=85.2

Q ss_pred             eEEEEecChhHHHHHHHHHhC--CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHH----HHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAA----ALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~--G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~----~~~v   73 (226)
                      ||+|||+| ||+..+..+.+.  ++++. ++||++++.+++.+. |+..++|.++++++.|+|++++|+..+    .+-+
T Consensus         9 rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~~a   87 (372)
T 4gmf_A            9 RVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQLA   87 (372)
T ss_dssp             EEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHHHH
T ss_pred             EEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHHHH
Confidence            79999999 899888888764  57755 789999999888764 899999999999999999999998654    2222


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                             ...++.|+.|+.--..++++.+++.+.++++|+.+.-+-
T Consensus        88 -------~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v~~  126 (372)
T 4gmf_A           88 -------RHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWINT  126 (372)
T ss_dssp             -------HHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             -------HHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence                   244557776655555788899999999999888765543

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.84  E-value=4.8e-09  Score=88.74  Aligned_cols=102  Identities=11%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      +||+|||+|+||+.+++.+.+. +++ |.++|+++++  .+. .|+..+.+.++++.++|+|++|+|...+.+.+.    
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~----   76 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA----   76 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH----
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH----
Confidence            4799999999999999999886 566 4588998665  232 466666778887778999999999866665554    


Q ss_pred             ccccccCCCcEEEecCCC--CHHHH-HHHHHHHHhcC
Q 027255           79 GVLEQICPGKGYIDMSTV--DHETS-IKISRAITSKG  112 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~--~~~~~-~~l~~~~~~~g  112 (226)
                         ..++.|+.+++.++.  +.... +++.+.+++.+
T Consensus        77 ---~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           77 ---PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             ---HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence               456678888877654  34444 67777666544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.83  E-value=1.7e-08  Score=85.66  Aligned_cols=90  Identities=16%  Similarity=0.145  Sum_probs=65.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHH----HC--------CCcccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----AH--------GATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~----~~--------g~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.||+++|..|+.+|+ +|.+||+++++++...    ..        .+..+.+. +++++||+||++++.+
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p   93 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP   93 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999999999 9999999998776421    10        13344666 7889999999998332


Q ss_pred             ---------------HHHHHHhhcccccccccCCCcEEEecCC
Q 027255           68 ---------------AAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        68 ---------------~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                                     ..++++.   +.+.+.. ++.+++..|+
T Consensus        94 ~k~g~tr~dl~~~n~~i~~~i~---~~i~~~~-p~a~viv~tN  132 (328)
T 2hjr_A           94 RKPNMTRSDLLTVNAKIVGSVA---ENVGKYC-PNAFVICITN  132 (328)
T ss_dssp             CCTTCCSGGGHHHHHHHHHHHH---HHHHHHC-TTCEEEECCS
T ss_pred             CCCCCchhhHHhhhHHHHHHHH---HHHHHHC-CCeEEEEecC
Confidence                           2244454   4555555 6777666544

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.83  E-value=1.5e-08  Score=86.88  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=82.6

Q ss_pred             eEEEEecChhHHH-HHHHHHhC-CCeE-EEEcCCchhHHHHHHC-CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKA-ISMNLLRN-GFKV-TVWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~-~A~~l~~~-G~~V-~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~   75 (226)
                      ||||||+|.||.. ++..+.+. +++| .++|+++++..  ... ++..+.+++++++  +.|+|++|+|+..+.+.+. 
T Consensus         7 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~-   83 (358)
T 3gdo_A            7 KVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTM-   83 (358)
T ss_dssp             EEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHH-
T ss_pred             eEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHH-
Confidence            7999999999997 67777665 6775 47899987632  223 6778899999998  6899999999987776665 


Q ss_pred             cccccccccCCCcEE-EecC-CCCHHHHHHHHHHHHhcCCcEEec
Q 027255           76 DKGGVLEQICPGKGY-IDMS-TVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        76 ~~~~l~~~l~~g~iv-vd~s-t~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                            ..++.|+.| ++-- +.+....+++.+.++++|+.+.-+
T Consensus        84 ------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~  122 (358)
T 3gdo_A           84 ------ACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVY  122 (358)
T ss_dssp             ------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             ------HHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEe
Confidence                  445567655 4433 468899999999999988765544

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.83  E-value=1.4e-08  Score=85.26  Aligned_cols=91  Identities=16%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHH---CC------CcccCCHHHHhhhCCeEEEecCCHH-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA---HG------ATVGGSPAEVIKKCTITIGMLADPA-   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~---~g------~~~~~s~~~~~~~advvi~~~p~~~-   68 (226)
                      |||+|||+|.||.++|..|+.+|+  +|++||+++++++....   ..      .++..+..++++++|+||++++.+. 
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~~   80 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQK   80 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC-----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence            899999999999999999999999  99999999886654221   11      1222123467889999999995533 


Q ss_pred             --------------HHHHHhhcccccccccCCCcEEEecCC
Q 027255           69 --------------AALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        69 --------------~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                                    .+++++   ..+.+. .++.+++..|+
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~~~vi~~tN  117 (304)
T 2v6b_A           81 PGESRLDLLEKNADIFRELV---PQITRA-APDAVLLVTSN  117 (304)
T ss_dssp             -------CHHHHHHHHHHHH---HHHHHH-CSSSEEEECSS
T ss_pred             CCCcHHHHHHhHHHHHHHHH---HHHHHh-CCCeEEEEecC
Confidence                          234444   445555 46777766544

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.82  E-value=1.1e-08  Score=88.53  Aligned_cols=93  Identities=23%  Similarity=0.310  Sum_probs=70.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-CCCcc------cCCHHHHhhhCCeEEEecCCHHH-HHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATV------GGSPAEVIKKCTITIGMLADPAA-ALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-~g~~~------~~s~~~~~~~advvi~~~p~~~~-~~~   72 (226)
                      ++|+|||+|.+|..+++.+...|.+|++|||++++.+.+.+ .|...      ..++.+.+.++|+||.|++.+.. ...
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t~~  248 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPK  248 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCCcc
Confidence            47999999999999999999999999999999999887766 45542      23466778899999998865432 111


Q ss_pred             HhhcccccccccCCCcEEEecCC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      ++.  ...++.++++.+|||++.
T Consensus       249 li~--~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          249 LVS--NSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             CBC--HHHHTTSCTTCEEEEGGG
T ss_pred             eec--HHHHhcCCCCcEEEEEec
Confidence            110  223466789999999983

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.81  E-value=3.1e-09  Score=87.90  Aligned_cols=112  Identities=21%  Similarity=0.215  Sum_probs=76.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CC--cc-cCCHHHHhh-hCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--TV-GGSPAEVIK-KCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~--~~-~~s~~~~~~-~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|+|+|.||++++..|++.|++|++|||++++++.+.+. +.  .. ..+++++.+ ++|+||.++|.+... .+. 
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~-~~~-  197 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG-GTA-  197 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---------
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCC-CCC-
Confidence            479999999999999999999999999999999998887643 11  11 223334333 799999999975432 221 


Q ss_pred             ccccc-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEec
Q 027255           76 DKGGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEA  118 (226)
Q Consensus        76 ~~~~l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~  118 (226)
                         .+ ...+.++.+++|++......+. +.+.++++|+. ++++
T Consensus       198 ---~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~G  238 (272)
T 1p77_A          198 ---SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSDG  238 (272)
T ss_dssp             ---CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEECS
T ss_pred             ---CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeCC
Confidence               11 1234578899999985433133 45667788887 7764

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.81  E-value=1.8e-08  Score=86.09  Aligned_cols=110  Identities=13%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             eEEEEecChhHH-HHHHHHHhC-CCeEE-EEcCCchhHHHHHH----CCCcccCCHHHHhhh--CCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGK-AISMNLLRN-GFKVT-VWNRTLSKCDELVA----HGATVGGSPAEVIKK--CTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~-~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~----~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~   72 (226)
                      ||||||+|.||. ..+..+.+. +++|. ++|++  +.+++.+    .++..+.++++++++  .|+|++|+|+..+.+.
T Consensus         4 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   81 (349)
T 3i23_A            4 KMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYDL   81 (349)
T ss_dssp             EEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHHH
Confidence            899999999999 466666654 67764 78988  4444433    477888999999976  8999999999777766


Q ss_pred             HhhcccccccccCCCcEE-EecC-CCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           73 VVFDKGGVLEQICPGKGY-IDMS-TVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~iv-vd~s-t~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      +.       ..++.|+.| ++-. +.++...+++.+.++++|+.+.-+..
T Consensus        82 ~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~  124 (349)
T 3i23_A           82 AK-------QAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQN  124 (349)
T ss_dssp             HH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCG
T ss_pred             HH-------HHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEec
Confidence            55       445566654 4433 46789999999999999987765543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.80  E-value=2.1e-08  Score=85.13  Aligned_cols=64  Identities=11%  Similarity=0.117  Sum_probs=53.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHH--------C----CCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA--------H----GATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~--------~----g~~~~~s~~~~~~~advvi~~~   64 (226)
                      |||+|||+|.||+++|..|+.+|+ +|.+||+++++++....        .    .+..+.+++++++++|+||+++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~   86 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   86 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence            689999999999999999999998 99999999987765211        1    1333578888899999999998

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.79  E-value=2.2e-08  Score=87.49  Aligned_cols=91  Identities=14%  Similarity=0.080  Sum_probs=72.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|+|||+|.+|+.+|+.+...|.+|+++|+++.+.......|..+ .+++++++++|+|++++.+..    ++.  ...
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atgt~~----lI~--~e~  320 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTGNKD----VIT--IDH  320 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCSSSS----SBC--HHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCCCcc----ccC--HHH
Confidence            4799999999999999999999999999999998766555667765 478999999999999875422    221  123


Q ss_pred             ccccCCCcEEEecCCCCH
Q 027255           81 LEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~   98 (226)
                      +..++++.++|+++....
T Consensus       321 l~~MK~GAILINvGRgdv  338 (464)
T 3n58_A          321 MRKMKDMCIVGNIGHFDN  338 (464)
T ss_dssp             HHHSCTTEEEEECSSSTT
T ss_pred             HhcCCCCeEEEEcCCCCc
Confidence            467899999999997653

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.77  E-value=1.9e-08  Score=86.29  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=83.5

Q ss_pred             eEEEEecChhHHH-HHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhh--CCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKK--CTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~-~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~~   75 (226)
                      ||||||+|.||.. .+..|.+. +++|. ++|+++++..  .+. ++..+.+.++++++  .|+|++|+|+..+.+.+. 
T Consensus         7 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~-   83 (362)
T 3fhl_A            7 KTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAG-   83 (362)
T ss_dssp             EEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHH-
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHH-
Confidence            7999999999997 77777765 67764 7899988732  222 67788999999976  899999999987776655 


Q ss_pred             cccccccccCCCcE-EEecC-CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           76 DKGGVLEQICPGKG-YIDMS-TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        76 ~~~~l~~~l~~g~i-vvd~s-t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                            ..++.|+. +++-- +.++...+++.+.++++|+.+.-+.
T Consensus        84 ------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~  123 (362)
T 3fhl_A           84 ------MALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQ  123 (362)
T ss_dssp             ------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             ------HHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence                  44556654 55544 5688999999999999888765443

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.76  E-value=1.6e-08  Score=85.11  Aligned_cols=100  Identities=10%  Similarity=0.315  Sum_probs=67.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHH--HHH-HCCC------cc--cCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD--ELV-AHGA------TV--GGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~-~~g~------~~--~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.||..+|..|+.+|+  +|++|||++++.+  .+. ..+.      .+  ..+ .+.++++|+||++++.+
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~~~   86 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGPR   86 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCCCC
Confidence            799999999999999999999999  9999999987765  221 2222      11  123 35678999999999532


Q ss_pred             ---------------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHH
Q 027255           68 ---------------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISR  106 (226)
Q Consensus        68 ---------------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~  106 (226)
                                     ..+++++   ..+.+. .++.+|+..++ .......+.+
T Consensus        87 ~~~g~~r~~~~~~n~~~~~~~~---~~i~~~-~~~~~vi~~~N-p~~~~~~~~~  135 (319)
T 1lld_A           87 QKPGQSRLELVGATVNILKAIM---PNLVKV-APNAIYMLITN-PVDIATHVAQ  135 (319)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTSEEEECCS-SHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCceEEEecC-chHHHHHHHH
Confidence                           1223444   444443 57777777654 3344344443

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.76  E-value=1.2e-08  Score=84.37  Aligned_cols=112  Identities=13%  Similarity=0.084  Sum_probs=78.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CC--cccCCHHHHh-hhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GA--TVGGSPAEVI-KKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~--~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~   75 (226)
                      +++.|+|+|.+|++++..|.+.|. +|++++|++++++++.+. +.  ....+.+++. .++|+||.++|..-.-....+
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i  200 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTADLPPL  200 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCC
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCC
Confidence            368999999999999999999996 899999999999888764 21  1112333332 679999999987532111010


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEec
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEA  118 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~  118 (226)
                          -.+.++++.+++|+... |..+. +.++++++|+. .+|+
T Consensus       201 ----~~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~G  238 (272)
T 3pwz_A          201 ----PADVLGEAALAYELAYG-KGLTP-FLRLAREQGQARLADG  238 (272)
T ss_dssp             ----CGGGGTTCSEEEESSCS-CCSCH-HHHHHHHHSCCEEECT
T ss_pred             ----CHHHhCcCCEEEEeecC-CCCCH-HHHHHHHCCCCEEECC
Confidence                01346789999999775 43333 55567778887 6655

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.75  E-value=1.2e-07  Score=77.02  Aligned_cols=93  Identities=14%  Similarity=0.139  Sum_probs=68.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |||+|+|+|.||+.+++.+.+.++++. ++|++++.     ..|+.++++++++. ++|+||-++ .++.+.+.+   . 
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft-~p~a~~~~~---~-   72 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFS-NPNLLFPLL---D-   72 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECS-CHHHHHHHH---T-
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeC-ChHHHHHHH---H-
Confidence            589999999999999999998877755 47988763     46888888998888 999988666 345565655   2 


Q ss_pred             cccccCCCcEEEecCCCC-HHHHHHHHHHH
Q 027255           80 VLEQICPGKGYIDMSTVD-HETSIKISRAI  108 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~-~~~~~~l~~~~  108 (226)
                          ++.|..+|..+|.. ++...++.+.+
T Consensus        73 ----l~~g~~vVigTTG~s~e~~~~l~~aa   98 (243)
T 3qy9_A           73 ----EDFHLPLVVATTGEKEKLLNKLDELS   98 (243)
T ss_dssp             ----SCCCCCEEECCCSSHHHHHHHHHHHT
T ss_pred             ----HhcCCceEeCCCCCCHHHHHHHHHHH
Confidence                56777777777754 44445555443

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.75  E-value=3e-08  Score=87.92  Aligned_cols=110  Identities=20%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHC-CCcc----cC---CHHHHhhhCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV----GG---SPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~-g~~~----~~---s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      +|.|||+|.+|++++..|++. |++|++++|++++++.+.+. ++..    ..   ++.++++++|+||.|+|..... .
T Consensus        25 ~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~~-~  103 (467)
T 2axq_A           25 NVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFHP-N  103 (467)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGHH-H
T ss_pred             EEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhhH-H
Confidence            699999999999999999998 78999999999999888754 4321    11   3456678899999999874322 2


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +.      ...+.++..++|.+...|. ...+.+.++++|+.++++-
T Consensus       104 v~------~a~l~~g~~vvd~~~~~p~-~~~Ll~~Ak~aGv~~i~g~  143 (467)
T 2axq_A          104 VV------KSAIRTKTDVVTSSYISPA-LRELEPEIVKAGITVMNEI  143 (467)
T ss_dssp             HH------HHHHHHTCEEEECSCCCHH-HHHHHHHHHHHTCEEECSC
T ss_pred             HH------HHHHhcCCEEEEeecCCHH-HHHHHHHHHHcCCEEEecC
Confidence            22      1334568889998776665 4567778888899888774

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.75  E-value=3e-08  Score=81.81  Aligned_cols=111  Identities=19%  Similarity=0.215  Sum_probs=77.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CC--c-ccCCHHHHh-hhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--T-VGGSPAEVI-KKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~--~-~~~s~~~~~-~~advvi~~~p~~~~~~~v~~   75 (226)
                      +++.|+|+|.||++++..|++.|++|+++||++++.+.+.+. +.  . ...+.+++. .++|+||.++|.+.. ..+  
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~~--  196 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDI--  196 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCC--
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-CCC--
Confidence            478999999999999999999999999999999998877643 21  1 122333333 479999999987543 111  


Q ss_pred             cccccc-cccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEec
Q 027255           76 DKGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEA  118 (226)
Q Consensus        76 ~~~~l~-~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~  118 (226)
                        ..+. ..++++.+++|++.. |..+. +.+..+++|+. .+++
T Consensus       197 --~~i~~~~l~~~~~v~D~~y~-p~~t~-~~~~a~~~G~~~~~~G  237 (271)
T 1nyt_A          197 --PAIPSSLIHPGIYCYDMFYQ-KGKTP-FLAWCEQRGSKRNADG  237 (271)
T ss_dssp             --CCCCGGGCCTTCEEEESCCC-SSCCH-HHHHHHHTTCCEEECT
T ss_pred             --CCCCHHHcCCCCEEEEeccC-CcCCH-HHHHHHHcCCCeecCC
Confidence              1111 235688999999886 33333 45667778877 5543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.75  E-value=2.2e-08  Score=87.22  Aligned_cols=91  Identities=21%  Similarity=0.145  Sum_probs=72.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|+|+|+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++++|+|++|.-+.    .++.  ...
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~----~lI~--~e~  293 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNK----NVVT--REH  293 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCS----CSBC--HHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCc----ccCC--HHH
Confidence            4799999999999999999999999999999998766666667644 57999999999999973222    2221  134


Q ss_pred             ccccCCCcEEEecCCCCH
Q 027255           81 LEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~   98 (226)
                      +..+++|.++|+++...+
T Consensus       294 l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          294 LDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             HHHSCTTEEEEECSSTTT
T ss_pred             HHhcCCCcEEEEecCCCc
Confidence            467889999999998755

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=98.74  E-value=5.9e-08  Score=83.73  Aligned_cols=113  Identities=15%  Similarity=0.157  Sum_probs=86.9

Q ss_pred             CeEEEEe-cChhHHH-HH----HHHHhCC-CeE----------EEEcCCchhHHHHHH-CCC-cccCCHHHHhhh--CCe
Q 027255            1 MEVGFLG-LGIMGKA-IS----MNLLRNG-FKV----------TVWNRTLSKCDELVA-HGA-TVGGSPAEVIKK--CTI   59 (226)
Q Consensus         1 m~IgvIG-~G~mG~~-~A----~~l~~~G-~~V----------~~~dr~~~~~~~l~~-~g~-~~~~s~~~~~~~--adv   59 (226)
                      +|||||| +|.||.. .+    ..+.+.+ ..+          .++||++++++.+.+ .|+ ..++++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4799999 9999998 77    6676554 222          499999999988876 477 478999999976  799


Q ss_pred             EEEecCCHHHHHHHhhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        60 vi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      |++|+|+..+.+.+.       ..++.|+.|+.--  +.+....+++.+.++++|+.+.-+..
T Consensus        87 V~i~tp~~~h~~~~~-------~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~~  142 (383)
T 3oqb_A           87 FFDAATTQARPGLLT-------QAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHGTVQD  142 (383)
T ss_dssp             EEECSCSSSSHHHHH-------HHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCG
T ss_pred             EEECCCchHHHHHHH-------HHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence            999999877665554       5566777666433  46888999999999999887665543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.74  E-value=3.1e-08  Score=86.24  Aligned_cols=92  Identities=16%  Similarity=0.199  Sum_probs=69.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC---------------------------CHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---------------------------SPAEV   53 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~---------------------------s~~~~   53 (226)
                      .+|+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+.|+..+.                           ++.++
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~  252 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQ  252 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHH
Confidence            379999999999999999999999999999999998888777866442                           25677


Q ss_pred             hhhCCeEEEe--cCCHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255           54 IKKCTITIGM--LADPAAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        54 ~~~advvi~~--~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      +.++|+||.+  +|... ...++ . +..+..+++|.+|||++.
T Consensus       253 ~~~aDvVI~~~~~pg~~-ap~li-~-~~~l~~mk~g~vIVdva~  293 (401)
T 1x13_A          253 AKEVDIIVTTALIPGKP-APKLI-T-REMVDSMKAGSVIVDLAA  293 (401)
T ss_dssp             HHHCSEEEECCCCTTSC-CCCCB-C-HHHHHTSCTTCEEEETTG
T ss_pred             hCCCCEEEECCccCCCC-CCeee-C-HHHHhcCCCCcEEEEEcC
Confidence            7889999999  44211 11111 0 123356789999999984

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.74  E-value=6.2e-08  Score=81.76  Aligned_cols=111  Identities=7%  Similarity=-0.058  Sum_probs=85.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHC--CCcccCCHHHHh-----------hhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH--GATVGGSPAEVI-----------KKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~--g~~~~~s~~~~~-----------~~advvi~~~p   65 (226)
                      +||||||+ |.||...+..+.+.+.+ |.++|+++++. .+.+.  +...+++.++++           .+.|+|++|+|
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP   82 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP   82 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence            58999999 78999999999988877 45789998874 33333  567788999987           35899999999


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +..+.+.+.       ..++.|+.|+.--  +.++...+++.+.++++|+.+.-+.
T Consensus        83 ~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~  131 (318)
T 3oa2_A           83 NYLHYPHIA-------AGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNIL  131 (318)
T ss_dssp             GGGHHHHHH-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred             cHHHHHHHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEEE
Confidence            977776655       4455666554433  4688999999999999998776654

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.72  E-value=7.3e-08  Score=81.13  Aligned_cols=111  Identities=9%  Similarity=0.002  Sum_probs=86.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHC--CCcccCCHHHHh----------hhCCeEEEecCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH--GATVGGSPAEVI----------KKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~--g~~~~~s~~~~~----------~~advvi~~~p~   66 (226)
                      +||||||+ |.||...+..+.+.+.+ |.++|+++++. .+.+.  +.....+.++++          .+.|+|++|+|+
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~   82 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN   82 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc
Confidence            58999999 78999999999988877 45789998874 33332  567788999987          458999999999


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      ..+.+.+.       ..++.|+.|+.--  +.++...+++.+.++++|+.+.-+-
T Consensus        83 ~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~  130 (312)
T 3o9z_A           83 HLHYPQIR-------MALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVL  130 (312)
T ss_dssp             GGHHHHHH-------HHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECC
T ss_pred             hhhHHHHH-------HHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            87776655       4455676555433  4688999999999999998766554

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.72  E-value=2.9e-08  Score=92.40  Aligned_cols=92  Identities=20%  Similarity=0.281  Sum_probs=71.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----------------------CCcccCCHHHHhhhCCe
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----------------------GATVGGSPAEVIKKCTI   59 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s~~~~~~~adv   59 (226)
                      ||+|||+|.||..||..++.+|++|+++|++++.++...+.                      .+..+.+.+ .+++||+
T Consensus       318 ~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aDl  396 (742)
T 3zwc_A          318 SVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTVDL  396 (742)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSCSE
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhCCE
Confidence            79999999999999999999999999999999876543211                      123344544 4679999


Q ss_pred             EEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        60 vi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      ||.++|..-.++.-+|  .++-+.+++++++...|++
T Consensus       397 VIEAV~E~l~iK~~vf--~~le~~~~~~aIlASNTSs  431 (742)
T 3zwc_A          397 VVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSA  431 (742)
T ss_dssp             EEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSS
T ss_pred             EEEeccccHHHHHHHH--HHHhhcCCCCceEEecCCc
Confidence            9999999888887666  5577778888888665444

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.71  E-value=4.7e-08  Score=84.20  Aligned_cols=94  Identities=22%  Similarity=0.280  Sum_probs=68.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-CCCcc------cCCHHHHhhhCCeEEEecCCHHH-HHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATV------GGSPAEVIKKCTITIGMLADPAA-ALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-~g~~~------~~s~~~~~~~advvi~~~p~~~~-~~~   72 (226)
                      ++|+|+|+|.+|..+++.+...|++|+++||++++.+.+.+ .|...      ..+..++++++|+||.|++.+.. ...
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~  246 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPK  246 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------C
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccch
Confidence            47999999999999999999999999999999998887765 45432      23456778899999999986431 111


Q ss_pred             HhhcccccccccCCCcEEEecCCC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      ++.  ...++.++++.+|||.+..
T Consensus       247 li~--~~~l~~mk~gg~iV~v~~~  268 (369)
T 2eez_A          247 LVT--RDMLSLMKEGAVIVDVAVD  268 (369)
T ss_dssp             CSC--HHHHTTSCTTCEEEECC--
T ss_pred             hHH--HHHHHhhcCCCEEEEEecC
Confidence            111  2334667889999999853

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.71  E-value=4.2e-08  Score=86.69  Aligned_cols=112  Identities=23%  Similarity=0.231  Sum_probs=81.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-C-Ccc----cC---CHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-G-ATV----GG---SPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g-~~~----~~---s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      ++|.|+|+|.+|+.+++.|++.|++|++++|++++++.+.+. + +..    ..   +..++++++|+|+.|+|...+. 
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~-   82 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA-   82 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch-
Confidence            369999999999999999999999999999999988877543 2 211    12   3446677899999999864332 


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      .+.      ...+.+|..+++.+...|. ...+.+.+++.|+.++++--
T Consensus        83 ~i~------~a~l~~g~~vvd~~~~~~~-~~~l~~aA~~aGv~~i~g~g  124 (450)
T 1ff9_A           83 TVI------KSAIRQKKHVVTTSYVSPA-MMELDQAAKDAGITVMNEIG  124 (450)
T ss_dssp             HHH------HHHHHHTCEEEESSCCCHH-HHHTHHHHHHTTCEEECSCB
T ss_pred             HHH------HHHHhCCCeEEEeecccHH-HHHHHHHHHHCCCeEEeCCC
Confidence            222      1234467788888766665 46778888889998887643

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.71  E-value=3.2e-08  Score=78.78  Aligned_cols=70  Identities=17%  Similarity=0.300  Sum_probs=56.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-CCCcc----cCC---HHHH-hhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATV----GGS---PAEV-IKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-~g~~~----~~s---~~~~-~~~advvi~~~p~~~~~   70 (226)
                      |||.|+|+|.+|+.+|+.|.+.|++|+++|+++++++.+.+ .+..+    ..+   +.++ ++++|+|+++++++...
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   79 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN   79 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH
Confidence            89999999999999999999999999999999999988765 35432    122   2232 46799999999986543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.70  E-value=1.8e-08  Score=74.29  Aligned_cols=66  Identities=20%  Similarity=0.274  Sum_probs=52.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhhCCeEEEecCCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~----~~~advvi~~~p~~   67 (226)
                      +|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.+....    .+.+.+    .+++|+|+.+++++
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            5999999999999999999999999999999988877766554321    222222    46799999999874

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.70  E-value=9.8e-08  Score=80.74  Aligned_cols=63  Identities=10%  Similarity=0.226  Sum_probs=51.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHH---C-------C--CcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---H-------G--ATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~---~-------g--~~~~~s~~~~~~~advvi~~~   64 (226)
                      |||+|||+|.||.++|..|+..|+ +|.+||+++++++....   .       .  +..+.+. +++++||+||+++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            589999999999999999999998 99999999987653211   1       2  2334666 7889999999998

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.69  E-value=9.2e-08  Score=81.08  Aligned_cols=106  Identities=9%  Similarity=0.121  Sum_probs=83.4

Q ss_pred             CeEEEEecChhHH-HHHHHHHhC-CCeE-EEEcCCchhHHHHHHCCCcccCCHHHHhhh---CCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGK-AISMNLLRN-GFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~~-G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v~   74 (226)
                      +||||||+|.||. ..+..|.+. +++| .++|+++++      .|+..+.+.++++++   .|+|++|+|+..+.+.+.
T Consensus        26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~   99 (330)
T 4ew6_A           26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAY   99 (330)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred             ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence            3799999999998 788888875 6675 478999764      478888999999876   899999999877665554


Q ss_pred             hcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           75 FDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                             ..++.|+.|+.-.  +.+....+++.+.++++|+.+.-+.
T Consensus       100 -------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~  139 (330)
T 4ew6_A          100 -------KALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASW  139 (330)
T ss_dssp             -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred             -------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEe
Confidence                   4556776655433  4588999999999999998776664

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.68  E-value=8.1e-08  Score=83.38  Aligned_cols=89  Identities=20%  Similarity=0.254  Sum_probs=73.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc------hhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL------SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~------~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      ++|+|||.|+.|.+.|.||...|.+|.+-.|..      ...+...+.|.++. +.+|+++.+|+|++.+|+. .-.+++
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~-~q~~vy  115 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDK-QHSDVV  115 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGG-GHHHHH
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChh-hHHHHH
Confidence            479999999999999999999999999887732      23455666788765 6999999999999999984 555666


Q ss_pred             hcccccccccCCCcEEEecC
Q 027255           75 FDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~s   94 (226)
                         +.+.+.+++|+.+.-..
T Consensus       116 ---~~I~p~lk~G~~L~faH  132 (491)
T 3ulk_A          116 ---RTVQPLMKDGAALGYSH  132 (491)
T ss_dssp             ---HHHGGGSCTTCEEEESS
T ss_pred             ---HHHHhhCCCCCEEEecC
Confidence               56899999999887543

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.68  E-value=5.7e-08  Score=81.09  Aligned_cols=111  Identities=13%  Similarity=0.086  Sum_probs=82.8

Q ss_pred             CeEEEEecChhHHHHHHHHHh----CCCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLR----NGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~----~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v   73 (226)
                      +||||||+|.||+..++.+.+    .++++. ++||+...    ...|+. ..+.+++++  +.|+|++|+|+..+.+.+
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~   82 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYI   82 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHH
Confidence            479999999999999999875    356654 77886421    123544 478999987  579999999998777666


Q ss_pred             hhcccccccccCCCc-EEEec-CCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           74 VFDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~-ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      .       ..++.|+ ++++. -+.++...+++.+.++++|+.+..++....
T Consensus        83 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~  127 (294)
T 1lc0_A           83 R-------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELL  127 (294)
T ss_dssp             H-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGG
T ss_pred             H-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhc
Confidence            5       4555676 55654 356889999999999999988877765443

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.68  E-value=7.1e-08  Score=82.84  Aligned_cols=108  Identities=12%  Similarity=0.112  Sum_probs=79.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCC--------Ce-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhhh--CCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG--------FK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G--------~~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~~--advvi~~~p~~~   68 (226)
                      ||||||+|.||...+..+....        .+ +.++|+++++++.+.+. |+ ...++.++++++  .|+|++|+|+..
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~~   87 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGDS   87 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGGG
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHH
Confidence            6999999999999888876532        25 45789999999888765 65 567899999864  799999999988


Q ss_pred             HHHHHhhcccccccccCCCcEE-EecC-CCCHHHHHHH---HHHHHhcCCcEE
Q 027255           69 AALSVVFDKGGVLEQICPGKGY-IDMS-TVDHETSIKI---SRAITSKGGHFL  116 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~iv-vd~s-t~~~~~~~~l---~~~~~~~g~~~l  116 (226)
                      +.+.++       ..++.|+.| ++-- +.+..+.++|   ++..++.|+.+.
T Consensus        88 H~~~~~-------~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~  133 (390)
T 4h3v_A           88 HAEIAI-------AALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSM  133 (390)
T ss_dssp             HHHHHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHH-------HHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceE
Confidence            877666       445566654 4432 3567788888   444555665443

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=98.67  E-value=6.2e-08  Score=84.99  Aligned_cols=111  Identities=19%  Similarity=0.271  Sum_probs=81.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCe-EEEEcCCchhHHHHHHC--C----------------------CcccCCHHHHh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFK-VTVWNRTLSKCDELVAH--G----------------------ATVGGSPAEVI   54 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~-V~~~dr~~~~~~~l~~~--g----------------------~~~~~s~~~~~   54 (226)
                      +||||||+|.||+.++..+.+. +.+ +.++|+++++++.+.+.  |                      ..++++.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            3799999999999999988764 556 45789999998877542  3                      34678999998


Q ss_pred             h--hCCeEEEecCCHHH-HHHHhhcccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEec
Q 027255           55 K--KCTITIGMLADPAA-ALSVVFDKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        55 ~--~advvi~~~p~~~~-~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +  +.|+|++++|++.. .+.++       ..++.|+.|+..+. .......+|.+.++++|+.|.-+
T Consensus       104 ~d~dIDaVviaTp~p~~H~e~a~-------~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~  164 (446)
T 3upl_A          104 SNPLIDVIIDATGIPEVGAETGI-------AAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLG  164 (446)
T ss_dssp             TCTTCCEEEECSCCHHHHHHHHH-------HHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred             cCCCCCEEEEcCCChHHHHHHHH-------HHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeec
Confidence            7  47999999988643 33333       56678888875443 22345678888888888876443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.65  E-value=5.5e-08  Score=81.22  Aligned_cols=89  Identities=16%  Similarity=0.216  Sum_probs=64.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHH------CC--CcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA------HG--ATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~------~g--~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||.++|..|+.+|+  +|.+||+++++++.    +..      ..  +..+.+ .++++++|+||++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            899999999999999999999998  89999999987652    221      11  223345 7889999999999754


Q ss_pred             H---------------HHHHHHhhcccccccccCCCcEEEecC
Q 027255           67 P---------------AAALSVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        67 ~---------------~~~~~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      +               ..++++.   +.+.+. .|+.+++..|
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~---~~i~~~-~p~a~iivvs  118 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIA---KKIVEN-APESKILVVT  118 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHH---HHHHTT-STTCEEEECS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHH---HHHHhh-CCCeEEEEeC
Confidence            3               1233333   345454 4677777766

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.64  E-value=1.1e-07  Score=82.26  Aligned_cols=93  Identities=18%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc--CC---------------------------HH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GS---------------------------PA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s---------------------------~~   51 (226)
                      .+|+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+.|....  .+                           +.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~  252 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL  252 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHH
Confidence            37999999999999999999999999999999998888877776544  11                           56


Q ss_pred             HHhhhCCeEEEecCCHH-HHHHHhhcccccccccCCCcEEEecCC
Q 027255           52 EVIKKCTITIGMLADPA-AALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        52 ~~~~~advvi~~~p~~~-~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      +.+.++|+||.|++.+. ....++.  ...+..++++.+|||++.
T Consensus       253 ~~~~~aDvVi~~~~~pg~~~~~li~--~~~l~~mk~g~vivdva~  295 (384)
T 1l7d_A          253 KELVKTDIAITTALIPGKPAPVLIT--EEMVTKMKPGSVIIDLAV  295 (384)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCSC--HHHHTTSCTTCEEEETTG
T ss_pred             HHhCCCCEEEECCccCCCCCCeeeC--HHHHhcCCCCCEEEEEec
Confidence            67788999999983211 0101110  122356789999999884

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.61  E-value=9.2e-08  Score=81.17  Aligned_cols=110  Identities=11%  Similarity=-0.018  Sum_probs=81.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCCc-hhHHHHHH----CC--CcccCCHHHHhhh--CCeEEEecCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTL-SKCDELVA----HG--ATVGGSPAEVIKK--CTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~~-~~~~~l~~----~g--~~~~~s~~~~~~~--advvi~~~p~~~~~   70 (226)
                      +||||||+|.+|...++.| ..+++|. ++|+++ ++.+++.+    .|  ...+++.++++++  .|+|++|+|+..+.
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~   81 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNG   81 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchHH
Confidence            4899999999999888877 6677755 689987 45444433    25  4678999999875  89999999997776


Q ss_pred             HHHhhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCc--EEec
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGH--FLEA  118 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~--~ld~  118 (226)
                      +.+.       ..++.|+.|+.--  +.+....+++.+.++++|+.  +.-+
T Consensus        82 ~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~  126 (337)
T 3ip3_A           82 KILL-------EALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAM  126 (337)
T ss_dssp             HHHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred             HHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEec
Confidence            6555       4455676554432  35788999999999998876  5444

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.61  E-value=3.6e-07  Score=76.81  Aligned_cols=66  Identities=9%  Similarity=0.125  Sum_probs=51.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHH---C-------C--CcccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---H-------G--ATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~---~-------g--~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.||.+++..|+..|+ +|.++|+++++++....   .       .  +..+.+. +++++||+||++.+.+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            489999999999999999999997 99999999877654221   1       1  2223566 7789999999998543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.60  E-value=1.4e-07  Score=78.30  Aligned_cols=112  Identities=16%  Similarity=0.120  Sum_probs=77.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC------CC--cccC--CHHHHhhhCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH------GA--TVGG--SPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~------g~--~~~~--s~~~~~~~advvi~~~p~~~~~   70 (226)
                      ++.|+|+|.+|++++..|.+.|. +|+++||++++.+++.+.      +.  ....  ++.+.++++|+||.++|..-.-
T Consensus       129 ~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~  208 (283)
T 3jyo_A          129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPA  208 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTT
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCC
Confidence            68899999999999999999998 699999999998877542      12  2233  6778888999999999853211


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ..-.   .=-...++++.+++|+.-. |..+ .+.+.++++|+..+|+
T Consensus       209 ~~~~---pi~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~~~G  251 (283)
T 3jyo_A          209 HPGT---AFDVSCLTKDHWVGDVVYM-PIET-ELLKAARALGCETLDG  251 (283)
T ss_dssp             SCSC---SSCGGGCCTTCEEEECCCS-SSSC-HHHHHHHHHTCCEECT
T ss_pred             CCCC---CCCHHHhCCCCEEEEecCC-CCCC-HHHHHHHHCcCeEeCc
Confidence            0000   0012346788999998654 3222 2445556778877665

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=98.58  E-value=1.3e-07  Score=78.79  Aligned_cols=106  Identities=20%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhH-HHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~   76 (226)
                      +||+|+|+ |.||+.+++++.+.|++ .++..+|.+. ++  ..|+.++.|++++.+  ..|++++++|...+ .+++  
T Consensus         8 ~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP~~~~-~~~~--   81 (288)
T 2nu8_A            8 TKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVPAPFC-KDSI--   81 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCGGGH-HHHH--
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecCHHHH-HHHH--
Confidence            48999999 99999999999988998 3444444422 11  357888899999988  89999999998544 4444  


Q ss_pred             ccccccccCCC-cEEEecCC-CCHHHHHHHHHHHHhcCCcEE
Q 027255           77 KGGVLEQICPG-KGYIDMST-VDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        77 ~~~l~~~l~~g-~ivvd~st-~~~~~~~~l~~~~~~~g~~~l  116 (226)
                       .   +.++.| +.+|..++ ...+..+++.+.+++.|+.++
T Consensus        82 -~---ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~li  119 (288)
T 2nu8_A           82 -L---EAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI  119 (288)
T ss_dssp             -H---HHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             -H---HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence             2   223344 33455555 456677889999999998766

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.56  E-value=9e-08  Score=83.40  Aligned_cols=68  Identities=26%  Similarity=0.380  Sum_probs=56.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHH-CCCcc--cCCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-HGATV--GGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~-~g~~~--~~s~~~~~~~advvi~~~p~~~   68 (226)
                      ++|+|||+|.||..+++.|...|. +|+++||++++.+.+.+ .|+..  ..++.+++.++|+||.|+|.+.
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~  239 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH  239 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence            479999999999999999999998 89999999998866554 36543  2467778889999999998654

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.55  E-value=1e-07  Score=77.54  Aligned_cols=109  Identities=16%  Similarity=0.193  Sum_probs=83.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeE-EEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |||+++|+|+||+.+++.  . ++++ .+|+   ++..++   |+.++++++++++++|+|+.|.+. .++++.+     
T Consensus        13 ~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~~-~av~e~~-----   77 (253)
T 1j5p_A           13 MTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECASP-EAVKEYS-----   77 (253)
T ss_dssp             CEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSCH-HHHHHHH-----
T ss_pred             ceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCCH-HHHHHHH-----
Confidence            899999999999999998  4 8885 5777   444433   777888899988899999999854 6676644     


Q ss_pred             cccccCCCcEEEecCCC---CHHHHHHHHHHHHhcCCcE-EecCCCCChH
Q 027255           80 VLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHF-LEAPVSGSKQ  125 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~---~~~~~~~l~~~~~~~g~~~-ld~pv~g~~~  125 (226)
                       .+.|..|.-+|.+|..   .++..+++.+.+++.|..+ +-....+|-.
T Consensus        78 -~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~GlD  126 (253)
T 1j5p_A           78 -LQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLD  126 (253)
T ss_dssp             -HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCCHH
T ss_pred             -HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccchh
Confidence             2567789989888874   6777788888888877764 5455555543

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.53  E-value=2.2e-07  Score=80.99  Aligned_cols=112  Identities=20%  Similarity=0.265  Sum_probs=80.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC---eEEEEcCCchhHHHHHHC-------CCcc-------cCCHHHHhhh--CCeEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAH-------GATV-------GGSPAEVIKK--CTITI   61 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~---~V~~~dr~~~~~~~l~~~-------g~~~-------~~s~~~~~~~--advvi   61 (226)
                      |||.|||+|.+|+.+++.|++.|.   +|.+++|++++++.+.+.       .+..       ..+.++++++  +|+||
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            489999999999999999999983   899999999998876542       1211       2345567777  89999


Q ss_pred             EecCCHHHHHHHhhcccccccccCCCcEEEecCCCC-H-------HHHHHHHHHHHhcCCcEEecC
Q 027255           62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-H-------ETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        62 ~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~-------~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      .++|.... ..++      ...+..|..++|++... |       ....++.+.+++.|+.++.++
T Consensus        82 n~ag~~~~-~~v~------~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~  140 (405)
T 4ina_A           82 NIALPYQD-LTIM------EACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGS  140 (405)
T ss_dssp             ECSCGGGH-HHHH------HHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECC
T ss_pred             ECCCcccC-hHHH------HHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcC
Confidence            99876432 2333      23455778899875532 2       233567788888899877764

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=98.52  E-value=2.4e-07  Score=81.40  Aligned_cols=116  Identities=27%  Similarity=0.375  Sum_probs=85.6

Q ss_pred             eEEEEecChhHHHHHHHHHh----------CCCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecCC-H
Q 027255            2 EVGFLGLGIMGKAISMNLLR----------NGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLAD-P   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~----------~G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~-~   67 (226)
                      ||||||+|.||+.+++.|.+          .+.+ +.++||++++.+.+. .+...+.++++++++  .|+|+.|+|+ .
T Consensus        12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp~~~   90 (444)
T 3mtj_A           12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIGGLE   90 (444)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCCSST
T ss_pred             cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCCCch
Confidence            79999999999999988764          2345 447799998877763 366788999999874  7999999986 4


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcE-EecCCCCChH
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHF-LEAPVSGSKQ  125 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~-ld~pv~g~~~  125 (226)
                      .+.+.+.       ..++.|+.|+..... .....+++.+.++++|+.+ ..+-+.++-|
T Consensus        91 ~h~~~~~-------~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~giP  143 (444)
T 3mtj_A           91 PARELVM-------QAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIP  143 (444)
T ss_dssp             THHHHHH-------HHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSC
T ss_pred             HHHHHHH-------HHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCChH
Confidence            4444333       566788888866552 2345678888888889987 4777766543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.51  E-value=2.1e-07  Score=79.83  Aligned_cols=95  Identities=16%  Similarity=0.245  Sum_probs=67.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-------CCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-------~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      .+|.|+|+|.+|+.+++.+...|.+|+++||++++.+.+.+.+....       .+..+.+.++|+||.|++.+......
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~  247 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPI  247 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCe
Confidence            37999999999999999999999999999999999888876543221       23446667899999999764310000


Q ss_pred             hhcccccccccCCCcEEEecCCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +. .+...+.++++.+++|.+..
T Consensus       248 li-~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          248 LV-PASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CB-CHHHHTTSCTTCEEEETTCT
T ss_pred             ec-CHHHHhhCCCCCEEEEEecC
Confidence            00 01123567788899998753

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.49  E-value=5.9e-08  Score=80.73  Aligned_cols=111  Identities=12%  Similarity=0.095  Sum_probs=75.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CC--------c-ccCCHHHHhhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--------T-VGGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~--------~-~~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      +++.|+|.|.+|+++|..|++.| +|++++|++++.+.+.+. +.        . ...+..+.+.++|+||.++|....-
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~~  207 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP  207 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCCC
Confidence            36899999999999999999999 999999999888776542 10        0 1112244567899999999864321


Q ss_pred             --HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           71 --LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        71 --~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                        +...+.   -.+.++++.+++|++.. |..+ .+.+..+++|+.+++
T Consensus       208 ~~~~~~~~---~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~~  251 (287)
T 1nvt_A          208 NIDVEPIV---KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTIN  251 (287)
T ss_dssp             CCSSCCSS---CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEEC
T ss_pred             CCCCCCCC---CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEeC
Confidence              001000   12456788999999874 4333 355666777877654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.49  E-value=3.2e-07  Score=77.68  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC------CCcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH------GATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~------g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||.++|..|+..|+  +|.++|+++++++.    +...      ++....+..+++++||+||++...
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            589999999999999999999887  89999999987765    4432      233344445788999999999753

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.48  E-value=4.1e-07  Score=76.59  Aligned_cols=67  Identities=15%  Similarity=0.170  Sum_probs=52.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHH------CCCccc-CCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA------HGATVG-GSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~------~g~~~~-~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.||.++|..|+..|+  +|.++|+++++++.    +..      ....+. .+..+++++||+||++.+.+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            899999999999999999999886  89999999987652    222      123333 35677889999999997654

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=98.48  E-value=5.2e-07  Score=76.38  Aligned_cols=122  Identities=19%  Similarity=0.256  Sum_probs=80.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhC---------CCeE-EEEcCCchhHH------HHHH--CCCcccC--CHHHHhhh--CC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN---------GFKV-TVWNRTLSKCD------ELVA--HGATVGG--SPAEVIKK--CT   58 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~---------G~~V-~~~dr~~~~~~------~l~~--~g~~~~~--s~~~~~~~--ad   58 (226)
                      +||+|||+|.||+.+++.|.++         +.+| .++|+++.+.+      .+..  .....+.  ++++++++  .|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            4899999999999999999875         4554 46788865432      1221  1233444  89999875  79


Q ss_pred             eEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCH-HHHHHHHHHHHhcCCcEE-ecCCCCChH
Q 027255           59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGHFL-EAPVSGSKQ  125 (226)
Q Consensus        59 vvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~-~~~~~l~~~~~~~g~~~l-d~pv~g~~~  125 (226)
                      +|+.|+|+..+-.+..   +-+...+..|+.||..++... ...+++.+.++++|+.++ ++-+.++.|
T Consensus        83 vVv~~tp~~~h~~~a~---~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g~P  148 (327)
T 3do5_A           83 VLIEASVTRVDGGEGV---NYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMP  148 (327)
T ss_dssp             EEEECCCCC----CHH---HHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTTSC
T ss_pred             EEEECCCCcccchhHH---HHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeecCH
Confidence            9999999864411111   112366788999888766322 256788888888898764 666665543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.48  E-value=3.7e-07  Score=77.18  Aligned_cols=64  Identities=11%  Similarity=0.204  Sum_probs=51.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHH----HHH------CCCcc--cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVA------HGATV--GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~----l~~------~g~~~--~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+|.||.++|..|+.+|+ +|.+||+++++++.    +..      ....+  +.+. +++++||+||++..
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag   84 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAG   84 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccC
Confidence            589999999999999999999999 99999999987642    222      12333  3455 78899999999975

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.47  E-value=7.4e-07  Score=75.18  Aligned_cols=103  Identities=9%  Similarity=0.104  Sum_probs=66.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC-----CCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-----GATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~-----g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |||+|||+|.+|.+++..|+..|+  +|.++|+++++++.    +...     ..++..+..+++++||+||++.+.+..
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~k   87 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   87 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence            589999999999999999999987  89999999876443    2221     112222346678999999999876431


Q ss_pred             ---------------HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHH
Q 027255           70 ---------------ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAI  108 (226)
Q Consensus        70 ---------------~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~  108 (226)
                                     ++++.   +.+.+. .++.+++.. |......-.+....
T Consensus        88 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~-tNPv~~~~~~~~k~  136 (318)
T 1y6j_A           88 PGETRLDLAKKNVMIAKEVT---QNIMKY-YNHGVILVV-SNPVDIITYMIQKW  136 (318)
T ss_dssp             ---CHHHHHHHHHHHHHHHH---HHHHHH-CCSCEEEEC-SSSHHHHHHHHHHH
T ss_pred             CCcCHHHHHHhhHHHHHHHH---HHHHHh-CCCcEEEEe-cCcHHHHHHHHHHH
Confidence                           33444   445554 367777774 55555555444443

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.45  E-value=6.2e-07  Score=75.74  Aligned_cols=90  Identities=14%  Similarity=0.207  Sum_probs=63.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHH----HHHC------CCccc-CCHHHHhhhCCeEEEecCCH-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVAH------GATVG-GSPAEVIKKCTITIGMLADP-   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~----l~~~------g~~~~-~s~~~~~~~advvi~~~p~~-   67 (226)
                      |||+|||+|.||.++|..|+..|+ +|.++|+++++++.    +...      ...+. ++..+++++||+||++.+.+ 
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~p~   85 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPR   85 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCcCC
Confidence            589999999999999999999988 99999999987652    2221      23332 23357889999999996432 


Q ss_pred             --------------HHHHHHhhcccccccccCCCcEEEecC
Q 027255           68 --------------AAALSVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        68 --------------~~~~~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                                    ..++++.   +.+.+.. |+.+++..|
T Consensus        86 k~G~~R~dl~~~N~~i~~~i~---~~i~~~~-p~a~vivvt  122 (321)
T 3p7m_A           86 KPGMSRDDLLGINIKVMQTVG---EGIKHNC-PNAFVICIT  122 (321)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECC
T ss_pred             CCCCCHHHHHHHhHHHHHHHH---HHHHHHC-CCcEEEEec
Confidence                          2234444   4455554 666666664

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.43  E-value=4.6e-07  Score=80.29  Aligned_cols=66  Identities=14%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             eEEEEecChh-HHHHHHHHHhC-----CCeEEEEcCCchhHHHHHH--------C----CCcccCCHHHHhhhCCeEEEe
Q 027255            2 EVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTLSKCDELVA--------H----GATVGGSPAEVIKKCTITIGM   63 (226)
Q Consensus         2 ~IgvIG~G~m-G~~~A~~l~~~-----G~~V~~~dr~~~~~~~l~~--------~----g~~~~~s~~~~~~~advvi~~   63 (226)
                      ||+|||+|.+ +.++|..|+.+     +++|.+||+++++++....        .    .+..+.+..+++++||+||++
T Consensus        30 KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VVia  109 (472)
T 1u8x_X           30 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAH  109 (472)
T ss_dssp             EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEEc
Confidence            8999999999 66788888887     6789999999988665321        1    133456788999999999999


Q ss_pred             cCCH
Q 027255           64 LADP   67 (226)
Q Consensus        64 ~p~~   67 (226)
                      +|.+
T Consensus       110 ag~~  113 (472)
T 1u8x_X          110 IRVG  113 (472)
T ss_dssp             CCTT
T ss_pred             CCCc
Confidence            9873

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.43  E-value=9.7e-07  Score=66.17  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=60.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCc-hhHHHHH---HCCCccc----CC---HHHH-hhhCCeEEEecCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELV---AHGATVG----GS---PAEV-IKKCTITIGMLADPAA   69 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~-~~~~~l~---~~g~~~~----~s---~~~~-~~~advvi~~~p~~~~   69 (226)
                      +|.|+|+|.+|+.+++.|.+.|++|+++++++ ++.+.+.   ..|..+.    .+   +.++ ++++|+|+++++++..
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~   84 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChHH
Confidence            68999999999999999999999999999984 5555554   2344321    12   2333 6789999999988654


Q ss_pred             HHHHhhccccccccc-CCCcEEEecCC
Q 027255           70 ALSVVFDKGGVLEQI-CPGKGYIDMST   95 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l-~~g~ivvd~st   95 (226)
                      -..+.    .....+ +...+++....
T Consensus        85 n~~~~----~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           85 NAFVV----LSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             HHHHH----HHHHHHTSSSCEEEECSS
T ss_pred             HHHHH----HHHHHHCCCCEEEEEECC
Confidence            33332    122333 33456655544

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.41  E-value=6.9e-07  Score=74.87  Aligned_cols=90  Identities=10%  Similarity=0.108  Sum_probs=62.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCch---hHHHHHHC---CCcccCCHHHHhhhCCeEEEecC-------
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLS---KCDELVAH---GATVGGSPAEVIKKCTITIGMLA-------   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~---~~~~l~~~---g~~~~~s~~~~~~~advvi~~~p-------   65 (226)
                      +||+|||+|.||..+|..|+.+|+  +|.++|++++   ....+...   .+..+.+. +.+++||+||++..       
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~t   93 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQS   93 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----CC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCCC
Confidence            589999999999999999999998  9999999984   22233221   34445676 77899999999962       


Q ss_pred             -------CHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255           66 -------DPAAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        66 -------~~~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                             +...+++++   ..+.+.. ++.+++..|+
T Consensus        94 R~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~sN  126 (303)
T 2i6t_A           94 YLDVVQSNVDMFRALV---PALGHYS-QHSVLLVASQ  126 (303)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHT-TTCEEEECSS
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEcCC
Confidence                   112244454   4555555 7777766665

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.40  E-value=1e-06  Score=78.11  Aligned_cols=66  Identities=17%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             CeEEEEecChh--HHHHHHHHHhC----CCeEEEEcCCchhHHHHHH--------C----CCcccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIM--GKAISMNLLRN----GFKVTVWNRTLSKCDELVA--------H----GATVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~m--G~~~A~~l~~~----G~~V~~~dr~~~~~~~l~~--------~----g~~~~~s~~~~~~~advvi~   62 (226)
                      |||+|||+|.|  |.++|..|+..    |++|.+||+++++++....        .    .+..+++..+++++||+||+
T Consensus         4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VIi   83 (480)
T 1obb_A            4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVIN   83 (480)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEEE
Confidence            58999999996  67778888754    8999999999988665322        1    13345678889999999999


Q ss_pred             ecCC
Q 027255           63 MLAD   66 (226)
Q Consensus        63 ~~p~   66 (226)
                      ++|.
T Consensus        84 aagv   87 (480)
T 1obb_A           84 TAMV   87 (480)
T ss_dssp             CCCT
T ss_pred             CCCc
Confidence            9975

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=98.39  E-value=5e-06  Score=67.52  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=67.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhh-hCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||+|+|+ |.||+.+++.+... +++|. ++|++               .+++++.. .+|+|+-+++. ..+.+.+  
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p-~a~~~~~--   62 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHP-DVVMGNL--   62 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCT-TTHHHHH--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccCh-HHHHHHH--
Confidence            79999996 99999999998865 89976 56764               34555554 78999877744 4444444  


Q ss_pred             ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhc-CCcEEecCCCC
Q 027255           77 KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSK-GGHFLEAPVSG  122 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~-g~~~ld~pv~g  122 (226)
                          ...+..|..+|-.+| .+++...++.+.+++. ++.++-+|-++
T Consensus        63 ----~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~s  106 (245)
T 1p9l_A           63 ----EFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFA  106 (245)
T ss_dssp             ----HHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCC
T ss_pred             ----HHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence                133456766666565 4566666777766644 66666666543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=98.39  E-value=2e-07  Score=77.29  Aligned_cols=109  Identities=14%  Similarity=0.023  Sum_probs=73.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCC-CcccCCHHHHhhhCCeEEEecCCHHH--HHHHhhcc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHG-ATVGGSPAEVIKKCTITIGMLADPAA--ALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g-~~~~~s~~~~~~~advvi~~~p~~~~--~~~v~~~~   77 (226)
                      ++.|||+|.+|++++..|.+.|. +|++++|++++++.+.+.- .....++.+ + ++|+||.++|..-.  ......  
T Consensus       124 ~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~pi--  199 (282)
T 3fbt_A          124 ICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESPV--  199 (282)
T ss_dssp             EEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCSS--
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCCC--
Confidence            68999999999999999999998 8999999999998886531 111122223 3 79999999986311  000000  


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                        -...++++.+++|+.-. |..+ .+.+.++++|+..+|+
T Consensus       200 --~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~~~G  236 (282)
T 3fbt_A          200 --DKEVVAKFSSAVDLIYN-PVET-LFLKYARESGVKAVNG  236 (282)
T ss_dssp             --CHHHHTTCSEEEESCCS-SSSC-HHHHHHHHTTCEEECS
T ss_pred             --CHHHcCCCCEEEEEeeC-CCCC-HHHHHHHHCcCeEeCc
Confidence              11335678999998653 3222 3455666778876654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.39  E-value=1.9e-06  Score=72.60  Aligned_cols=96  Identities=13%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHH------CCCcccCCHHHHhhhCCeEEEecCCH-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA------HGATVGGSPAEVIKKCTITIGMLADP-   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~------~g~~~~~s~~~~~~~advvi~~~p~~-   67 (226)
                      |||+|||+|.+|.+++..|+.+|+  +|.++|+++++++.    +..      ....+..+..+++++||+||++.+.+ 
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~~   86 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQ   86 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCCC
Confidence            489999999999999999998884  89999999876553    222      12233335677899999999998643 


Q ss_pred             --------------HHHHHHhhcccccccccCCCcEEEecCCCCHHHH
Q 027255           68 --------------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETS  101 (226)
Q Consensus        68 --------------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~  101 (226)
                                    ..++++.   +.+.+. .++.+++..| ......
T Consensus        87 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~t-NPv~~~  129 (317)
T 3d0o_A           87 KPGETRLDLVSKNLKIFKSIV---GEVMAS-KFDGIFLVAT-NPVDIL  129 (317)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHH---HHHHHT-TCCSEEEECS-SSHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHH---HHHHHh-CCCcEEEEec-CcHHHH
Confidence                          2233343   344444 4677777744 444433

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.38  E-value=7.2e-07  Score=75.19  Aligned_cols=66  Identities=12%  Similarity=0.162  Sum_probs=50.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHH----HHC------CCcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH------GATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l----~~~------g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||.++|..|+..|.  +|.++|+++++.+..    ...      ..++..+..+++++||+||++.|.
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~   84 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCC
Confidence            589999999999999999988774  899999998765432    221      122223456778999999999764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.38  E-value=1.6e-06  Score=75.78  Aligned_cols=74  Identities=24%  Similarity=0.348  Sum_probs=60.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc----CCHH---HH-hhhCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPA---EV-IKKCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~---~~-~~~advvi~~~p~~~~~~~   72 (226)
                      |+|.|+|+|.+|+.+++.|.+.|++|+++|+++++++.+...|..+.    ++++   ++ ++++|+||++++++.....
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~~   84 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQ   84 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHHH
Confidence            57999999999999999999999999999999999999988886542    2222   22 4678999999998765544


Q ss_pred             Hh
Q 027255           73 VV   74 (226)
Q Consensus        73 v~   74 (226)
                      ++
T Consensus        85 i~   86 (413)
T 3l9w_A           85 LT   86 (413)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=98.37  E-value=1.1e-06  Score=73.11  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=76.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~~   77 (226)
                      +||+|+|+ |.||+.+++++.+.|+++ ++..+|.+... ...|..+..+++++.+  .+|++++++|. +.+.+++   
T Consensus         8 ~~VaVvGasG~~G~~~~~~l~~~g~~~-v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~---   81 (288)
T 1oi7_A            8 TRVLVQGITGREGQFHTKQMLTYGTKI-VAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAA---   81 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHH---
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCeE-EEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHH---
Confidence            47999998 999999999999989983 44444433100 1247888999999998  89999999987 4555555   


Q ss_pred             cccccccCCCc-EEEecCC-CCHHHHHHHHHHHHhcCCcEEe
Q 027255           78 GGVLEQICPGK-GYIDMST-VDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        78 ~~l~~~l~~g~-ivvd~st-~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      +...+   .|. .+|..++ ......+++.+.+++.|+.++.
T Consensus        82 ~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vig  120 (288)
T 1oi7_A           82 LEAAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIG  120 (288)
T ss_dssp             HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            33322   332 2444554 4556678888888888987663

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.35  E-value=9.2e-07  Score=72.95  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhC-CCeEE-EEcCCchhH-----HHHH--HCCCcccCCHHHHhhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRN-GFKVT-VWNRTLSKC-----DELV--AHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~-----~~l~--~~g~~~~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      |||+|+| +|.||+.+++.+.+. ++++. ++||+++..     .++.  ..|+.++.+++++++++|+||-+++. ..+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p-~a~   86 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLP-EGT   86 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCH-HHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCH-HHH
Confidence            4899999 899999999999865 67755 478875421     1111  12677789999999999999999854 444


Q ss_pred             HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      .+.+   .   ..++.|..+|..||. ++....++.+.+++  ...+-+|-
T Consensus        87 ~~~~---~---~al~~G~~vVigTTG~s~~~~~~L~~aa~~--~~vv~a~N  129 (272)
T 4f3y_A           87 LVHL---D---AALRHDVKLVIGTTGFSEPQKAQLRAAGEK--IALVFSAN  129 (272)
T ss_dssp             HHHH---H---HHHHHTCEEEECCCCCCHHHHHHHHHHTTT--SEEEECSC
T ss_pred             HHHH---H---HHHHcCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEECC
Confidence            4444   2   345567777776665 55555555555432  33344443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.35  E-value=1e-06  Score=77.91  Aligned_cols=89  Identities=13%  Similarity=0.121  Sum_probs=71.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++++|+|+|.+|..+|+.|...|.+|+++|+++.+.+.....+..+ .+.+++...+|+|+.+......+..      ..
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~vl~~------e~  338 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKDIIML------DH  338 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSCSBCH------HH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChhhhhH------HH
Confidence            3689999999999999999999999999999999888777777654 5678888999999988754332222      12


Q ss_pred             ccccCCCcEEEecCCC
Q 027255           81 LEQICPGKGYIDMSTV   96 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~   96 (226)
                      +..++++.+|++.+..
T Consensus       339 l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          339 MKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             HTTSCTTEEEEESSST
T ss_pred             HHhcCCCeEEEEcCCC
Confidence            3567889999998865

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.33  E-value=1.1e-06  Score=77.39  Aligned_cols=67  Identities=7%  Similarity=0.041  Sum_probs=52.4

Q ss_pred             CeEEEEecChh-HHHHHHHHHhC-----CCeEEEEcCCc--hhHHHHH--------HCC----CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTL--SKCDELV--------AHG----ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~m-G~~~A~~l~~~-----G~~V~~~dr~~--~~~~~l~--------~~g----~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+|.+ |.+++..|+.+     +++|.+||+++  ++++...        ..+    +..+.+..+++++||+|
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~V   87 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   87 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEE
Confidence            58999999999 88888888874     57899999999  7755421        112    23356788999999999


Q ss_pred             EEecCCH
Q 027255           61 IGMLADP   67 (226)
Q Consensus        61 i~~~p~~   67 (226)
                      ++++|.+
T Consensus        88 Vitagv~   94 (450)
T 1s6y_A           88 TTQFRVG   94 (450)
T ss_dssp             EECCCTT
T ss_pred             EEcCCCC
Confidence            9999863

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.32  E-value=2.1e-06  Score=72.26  Aligned_cols=113  Identities=12%  Similarity=0.153  Sum_probs=75.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCC---chhHHHHHHC-----CC--cc--cCC---HHHHhhhCCeEEEecC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT---LSKCDELVAH-----GA--TV--GGS---PAEVIKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~---~~~~~~l~~~-----g~--~~--~~s---~~~~~~~advvi~~~p   65 (226)
                      ++.|+|.|.+|++++..|++.|. +|++++|+   .++++++.+.     +.  ..  ..+   +.+.+.++|+||.++|
T Consensus       156 ~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          156 KMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATG  235 (315)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSS
T ss_pred             EEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECcc
Confidence            68899999999999999999998 89999999   8887776542     22  11  122   3456778999999998


Q ss_pred             CHHHHH-HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           66 DPAAAL-SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        66 ~~~~~~-~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      -.-.-. +..  +-.....++++.+++|+.-. |..+ .+.+.++++|+..+|+
T Consensus       236 ~Gm~~~~~~~--p~~~~~~l~~~~~V~DlvY~-P~~T-~ll~~A~~~G~~~~~G  285 (315)
T 3tnl_A          236 VGMKPFEGET--LLPSADMLRPELIVSDVVYK-PTKT-RLLEIAEEQGCQTLNG  285 (315)
T ss_dssp             TTSTTSTTCC--SCCCGGGCCTTCEEEESCCS-SSSC-HHHHHHHHTTCEEECS
T ss_pred             CCCCCCCCCC--CCCcHHHcCCCCEEEEeccC-CCCC-HHHHHHHHCCCeEeCc
Confidence            532100 000  00012346788899998754 3222 2455667788887665

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=98.31  E-value=1.7e-06  Score=71.82  Aligned_cols=112  Identities=14%  Similarity=0.116  Sum_probs=75.4

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhC-CCeEE-EEcCCchh-----HHHHH---HCCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRN-GFKVT-VWNRTLSK-----CDELV---AHGATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~-----~~~l~---~~g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      +||+|+| +|.||+.+++.+.+. ++++. ++|++++.     +.++.   ..|+.++.++++++.++|+||-+++. ..
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~p-~a  100 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQP-QA  100 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSCH-HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCCH-HH
Confidence            3799999 999999999998754 67754 66887532     12222   24778889999999999999988854 44


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                      +.+.+      ..+++.|..+|..||. +++...++.+.+++  +.++-+|-+
T Consensus       101 ~~~~~------~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~--~~~~~a~N~  145 (288)
T 3ijp_A          101 SVLYA------NYAAQKSLIHIIGTTGFSKTEEAQIADFAKY--TTIVKSGNM  145 (288)
T ss_dssp             HHHHH------HHHHHHTCEEEECCCCCCHHHHHHHHHHHTT--SEEEECSCC
T ss_pred             HHHHH------HHHHHcCCCEEEECCCCCHHHHHHHHHHhCc--CCEEEECCC
Confidence            44433      2445577777777775 45555566665543  344444433

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.29  E-value=2.7e-07  Score=77.61  Aligned_cols=88  Identities=13%  Similarity=0.066  Sum_probs=63.4

Q ss_pred             CeEEEEecChh-HHHHHHHHHhCCCeEEEEcCCchh----HHHHHHCCCcc-----c--CCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSK----CDELVAHGATV-----G--GSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~----~~~l~~~g~~~-----~--~s~~~~~~~advvi~~~p~~~   68 (226)
                      .++.|||.|.| |+++|+.|...|..|+++||+..+    .+.+...-...     +  .++.+.+.++|+||.+++.+.
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~  257 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSEN  257 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCc
Confidence            36899999986 999999999999999999998433    22222111111     1  467888999999999998743


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .   ++ .    .+.+++|.+|||.+..
T Consensus       258 ~---vI-~----~e~vk~GavVIDVgi~  277 (320)
T 1edz_A          258 Y---KF-P----TEYIKEGAVCINFACT  277 (320)
T ss_dssp             C---CB-C----TTTSCTTEEEEECSSS
T ss_pred             c---ee-C----HHHcCCCeEEEEcCCC
Confidence            1   12 1    1335789999999875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.29  E-value=9.3e-07  Score=74.80  Aligned_cols=90  Identities=9%  Similarity=0.040  Sum_probs=63.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHH----HHC-------CCcccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH-------GATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l----~~~-------g~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.||..+|..|+.+|+  +|.++|+++++++..    ...       .+..+.++++ +++||+||++...+
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~p  100 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGAR  100 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCCC
Confidence            689999999999999999999986  899999998876542    211       1233456665 89999999985432


Q ss_pred             ---------------HHHHHHhhcccccccccCCCcEEEecCC
Q 027255           68 ---------------AAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        68 ---------------~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                                     ..++++.   +.+.+. .|+.+++..|+
T Consensus       101 ~kpG~tR~dll~~N~~I~k~i~---~~I~k~-~P~a~ilvvtN  139 (330)
T 3ldh_A          101 QQEGESRLNLVQRNVNIFKFII---PNIVKH-SPDCLKELHPE  139 (330)
T ss_dssp             CCSSCCTTGGGHHHHHHHHHHH---HHHHHH-CTTCEEEECSS
T ss_pred             CCCCCCHHHHHHhhHHHHHHHH---HHHHhh-CCCceEEeCCC
Confidence                           2244444   445555 46676666653

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=98.29  E-value=1.8e-06  Score=72.08  Aligned_cols=105  Identities=18%  Similarity=0.224  Sum_probs=76.6

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhH-HHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~~   77 (226)
                      +|.|+|+ |.||+.+++++.+.|++ .+|..+|.+. ++  -.|+.++.|++++.+  .+|++++++|.. .+.+++   
T Consensus        15 ~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v---   87 (294)
T 2yv1_A           15 KAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAV---   87 (294)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH---
T ss_pred             EEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHH---
Confidence            5788899 99999999999999998 5666556542 11  147888999999998  899999999874 555555   


Q ss_pred             cccccccCCCcE-EEecCC-CCHHHHHHHHHHHHhcCCcEE
Q 027255           78 GGVLEQICPGKG-YIDMST-VDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        78 ~~l~~~l~~g~i-vvd~st-~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      +...   ..|.- +|..++ ......+++.+.+++.|+.++
T Consensus        88 ~ea~---~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi  125 (294)
T 2yv1_A           88 FEAI---DAGIELIVVITEHIPVHDTMEFVNYAEDVGVKII  125 (294)
T ss_dssp             HHHH---HTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            3222   23432 444454 456667889999988898766

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.28  E-value=2.1e-06  Score=70.48  Aligned_cols=74  Identities=20%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      .++.|||.|. +|+++|..|...|.+|++++++              +.++++.++++|+||.+++.+..    +   . 
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I---~-  208 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPGF----L---N-  208 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTTC----B---C-
T ss_pred             CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCcc----c---c-
Confidence            3789999985 8999999999999999999874              25678899999999999987542    2   1 


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                       .+.+++|.+|||.+...
T Consensus       209 -~~~vk~GavVIDvgi~~  225 (276)
T 3ngx_A          209 -REMVTPGSVVIDVGINY  225 (276)
T ss_dssp             -GGGCCTTCEEEECCCEE
T ss_pred             -HhhccCCcEEEEeccCc
Confidence             13468999999998753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.27  E-value=2.4e-06  Score=72.04  Aligned_cols=67  Identities=10%  Similarity=0.178  Sum_probs=52.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHH----HC-----CCcccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH-----GATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~----~~-----g~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.+|.+++..|+..++  +|.++|+++++++...    ..     ..++..+..+++++||+||++.+.+
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~   83 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP   83 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence            589999999999999999998876  8999999988776422    11     2333345677889999999998654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.27  E-value=2.5e-06  Score=71.84  Aligned_cols=65  Identities=12%  Similarity=0.167  Sum_probs=48.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCC--chhHHH----HHH------CCCccc-CCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT--LSKCDE----LVA------HGATVG-GSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~--~~~~~~----l~~------~g~~~~-~s~~~~~~~advvi~~~p   65 (226)
                      +||+|||+|.||..+|..|+.+|+ +|++||++  +++.+.    +..      ...++. ++..+.+++||+||++..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaag   87 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITAG   87 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeCC
Confidence            389999999999999999999999 99999999  444332    111      122222 223567899999999974

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.26  E-value=3.1e-06  Score=71.12  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=76.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCC---chhHHHHHHC-----CCc--c--cCCH---HHHhhhCCeEEEecC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT---LSKCDELVAH-----GAT--V--GGSP---AEVIKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~---~~~~~~l~~~-----g~~--~--~~s~---~~~~~~advvi~~~p   65 (226)
                      ++.|+|+|.+|++++..|.+.|. +|++++|+   .++++++.+.     +..  .  ..+.   .+.+.++|+||.++|
T Consensus       150 ~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp  229 (312)
T 3t4e_A          150 TMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTK  229 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCc
Confidence            68899999999999999999998 79999999   7777776542     221  1  2233   456788999999998


Q ss_pred             CHHHHHHHhhccccc---ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           66 DPAAALSVVFDKGGV---LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l---~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ..-.-..-    ..+   ...++++.+++|+.-. |..+ .+.+.++++|+..+|+
T Consensus       230 ~Gm~~~~~----~~~~~~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~G  279 (312)
T 3t4e_A          230 VGMKPLEN----ESLIGDVSLLRPELLVTECVYN-PHMT-KLLQQAQQAGCKTIDG  279 (312)
T ss_dssp             TTSTTSTT----CCSCCCGGGSCTTCEEEECCCS-SSSC-HHHHHHHHTTCEEECH
T ss_pred             CCCCCCCC----CcccCCHHHcCCCCEEEEeccC-CCCC-HHHHHHHHCCCeEECc
Confidence            64210000    111   1346788899998654 3222 2455567788877665

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.26  E-value=2.7e-06  Score=71.99  Aligned_cols=67  Identities=12%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHH---C------CCcccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA---H------GATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~---~------g~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|||+|.+|.+++..|+..++  +|.++|+++++++....   .      .+.+..+..+++++||+||++.+.+
T Consensus        10 ~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            689999999999999999998776  89999999887755221   1      2233345677899999999998643

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=98.25  E-value=4.2e-07  Score=75.08  Aligned_cols=101  Identities=23%  Similarity=0.243  Sum_probs=66.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-CCCeEE-EEcCCchhH--HHH------HHCCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLR-NGFKVT-VWNRTLSKC--DEL------VAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~-~G~~V~-~~dr~~~~~--~~l------~~~g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |||+|+|+ |.||+.+++.+.. .|++|. ++|+++++.  ..+      ...++...++++++++++|+|+-+++. ..
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~p-~~   84 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRP-EG   84 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCH-HH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCCh-HH
Confidence            58999998 9999999998874 578866 788876531  111      112455677788888889999966633 44


Q ss_pred             HHHHhhcccccccccCCCcEEEecCC-CCHHHHHHHHHHH
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMST-VDHETSIKISRAI  108 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~  108 (226)
                      ..+.+      ...++.|..+|..+| .+++...++.+..
T Consensus        85 ~~~~~------~~a~~~G~~vVigTtG~~~e~~~~L~~~a  118 (273)
T 1dih_A           85 TLNHL------AFCRQHGKGMVIGTTGFDEAGKQAIRDAA  118 (273)
T ss_dssp             HHHHH------HHHHHTTCEEEECCCCCCHHHHHHHHHHT
T ss_pred             HHHHH------HHHHhCCCCEEEECCCCCHHHHHHHHHhc
Confidence            44443      234456666666555 4555555555543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.25  E-value=2.2e-06  Score=72.50  Aligned_cols=66  Identities=12%  Similarity=0.158  Sum_probs=52.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC-----CCcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-----GATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~-----g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.||.++|..|+..|+  +|.++|+++++++.    +...     ...+..+..+++++||+||++...
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            689999999999999999999887  89999999887763    2221     334445556788999999998653

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=98.23  E-value=1.7e-06  Score=72.76  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=62.6

Q ss_pred             eEEEEecChhHHHHHHHHHh--CCCe-EEEEcCCchh-HHHHH-HCCCcc-cCCHHHHhh-----hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR--NGFK-VTVWNRTLSK-CDELV-AHGATV-GGSPAEVIK-----KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~--~G~~-V~~~dr~~~~-~~~l~-~~g~~~-~~s~~~~~~-----~advvi~~~p~~~~~   70 (226)
                      ||+|||+|.+|+.+++.|.+  .+.+ +.++|+++++ ...+. ..|+.. ..+.+++++     +.|+||.|+|...+.
T Consensus         6 rVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~h~   85 (312)
T 1nvm_B            6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHV   85 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHHHH
Confidence            79999999999999999965  3555 4578999887 55554 457653 455667654     479999999975554


Q ss_pred             HHHhhcccccccccCC--CcEEEecCCC
Q 027255           71 LSVVFDKGGVLEQICP--GKGYIDMSTV   96 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~--g~ivvd~st~   96 (226)
                      +.+.       ..++.  |+.|++.+..
T Consensus        86 ~~a~-------~al~a~~Gk~Vi~ekp~  106 (312)
T 1nvm_B           86 QNEA-------LLRQAKPGIRLIDLTPA  106 (312)
T ss_dssp             HHHH-------HHHHHCTTCEEEECSTT
T ss_pred             HHHH-------HHHHhCCCCEEEEcCcc
Confidence            4443       33445  8888887653

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.23  E-value=1.1e-06  Score=77.36  Aligned_cols=65  Identities=11%  Similarity=0.218  Sum_probs=53.5

Q ss_pred             CeEEEEecChh--HHHHHHHHHh----CCCeEEEEcCCchhHHHHHHC---------CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIM--GKAISMNLLR----NGFKVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~m--G~~~A~~l~~----~G~~V~~~dr~~~~~~~l~~~---------g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||.|+|  |..++..|+.    .| +|.+||+++++++.+...         .++.+.+.++++++||+||++++
T Consensus         6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~air   84 (450)
T 3fef_A            6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISIL   84 (450)
T ss_dssp             EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEeccc
Confidence            48999999996  6899999886    56 999999999887655332         24567889999999999999996


Q ss_pred             C
Q 027255           66 D   66 (226)
Q Consensus        66 ~   66 (226)
                      .
T Consensus        85 v   85 (450)
T 3fef_A           85 P   85 (450)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.22  E-value=5.5e-06  Score=70.52  Aligned_cols=65  Identities=8%  Similarity=0.126  Sum_probs=52.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC--CeEEEEcCCchhHHH----HHHC-----CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAH-----GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~----l~~~-----g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+ |.+|..+|..++..|  .+|.++|+++++++.    +...     .+....+..+++++||+||++..
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            58999998 999999999999988  489999999887654    3331     23445678888999999999863

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.22  E-value=4.8e-06  Score=70.06  Aligned_cols=66  Identities=17%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC--CeEEEEcCCchhHH--HHHHCC----Ccc---cCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCD--ELVAHG----ATV---GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~--~l~~~g----~~~---~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+ |.+|.+++..|+..|  ++|.++|+++.+..  .+....    +..   +++++++++++|+||++...
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~   78 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV   78 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence            89999998 999999999999888  78999999873222  232221    122   14677889999999999743

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=98.21  E-value=3.8e-06  Score=71.29  Aligned_cols=72  Identities=17%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeE-EEEcCCchhHHHHHH-CC------------------CcccCCHHHHhhhCCeE
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVA-HG------------------ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V-~~~dr~~~~~~~l~~-~g------------------~~~~~s~~~~~~~advv   60 (226)
                      ||||+|+|.||+.+++.|.+. +.+| .++|++++.+..+.+ .|                  +.+..++++++.++|+|
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV   83 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII   83 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence            899999999999999999875 4564 467888877766543 23                  23456888888899999


Q ss_pred             EEecCCHHHHHHH
Q 027255           61 IGMLADPAAALSV   73 (226)
Q Consensus        61 i~~~p~~~~~~~v   73 (226)
                      +.|+|...+.+..
T Consensus        84 ~~aTp~~~h~~~a   96 (334)
T 2czc_A           84 VDATPGGIGAKNK   96 (334)
T ss_dssp             EECCSTTHHHHHH
T ss_pred             EECCCccccHHHH
Confidence            9999986655443

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=98.20  E-value=3.6e-06  Score=71.35  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhC------C--CeE-EEEcCCchhHHH------HH----HCCCc-ccC---CHHHHhh-h
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN------G--FKV-TVWNRTLSKCDE------LV----AHGAT-VGG---SPAEVIK-K   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~------G--~~V-~~~dr~~~~~~~------l~----~~g~~-~~~---s~~~~~~-~   56 (226)
                      +||||||+|.||+.+++.|.++      |  ++| .++||++++.+.      +.    ..++. .++   ++++++. +
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            3799999999999999999764      2  454 477988765433      11    12332 344   8888872 4


Q ss_pred             CCeEEEecCCH---HHHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcE-EecCCCCCh
Q 027255           57 CTITIGMLADP---AAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHF-LEAPVSGSK  124 (226)
Q Consensus        57 advvi~~~p~~---~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~-ld~pv~g~~  124 (226)
                      .|+|+.|+|+.   +...+.+      ...+..|+.||.++.. .....+++.+.++++|+.| .++.+.++.
T Consensus        87 iDvVv~~t~~~~~~~~~~~~~------~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~gi  153 (331)
T 3c8m_A           87 FDIVVDATPASADGKKELAFY------KETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGGV  153 (331)
T ss_dssp             CSEEEECSCCCSSSHHHHHHH------HHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTS
T ss_pred             CCEEEECCCCCCccchHHHHH------HHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeeccccc
Confidence            79999999984   2222222      2566789988876542 2355677888888888764 466566653

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.19  E-value=2.7e-06  Score=70.64  Aligned_cols=73  Identities=22%  Similarity=0.321  Sum_probs=58.4

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHH--HHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPA--EVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~--~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      .++.|||.|. +|+++|..|...|.+|+++++...              +++  +.++++|+||.+++.+..    +   
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~----I---  224 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY----V---  224 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC----B---
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC----C---
Confidence            3688999987 799999999999999999998433              344  788999999999987542    2   


Q ss_pred             cccccccCCCcEEEecCCC
Q 027255           78 GGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~   96 (226)
                      .  .+.+++|.+|||.+..
T Consensus       225 ~--~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          225 K--GEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             C--GGGSCTTCEEEECCCE
T ss_pred             c--HHhcCCCcEEEEEecc
Confidence            1  1346899999999864

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.19  E-value=2.3e-06  Score=71.89  Aligned_cols=66  Identities=17%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHH----HHC-----CCcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDEL----VAH-----GATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l----~~~-----g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.+|.+++..|+.++  .+|.++|+++++++..    ...     ...+..+..+++++||+||++.+.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~   77 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGV   77 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCC
Confidence            89999999999999999999887  5899999998876642    221     223333456778999999998754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.19  E-value=4.4e-06  Score=66.97  Aligned_cols=89  Identities=10%  Similarity=0.026  Sum_probs=63.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc----cCCHH---HH-hhhCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGSPA---EV-IKKCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~----~~s~~---~~-~~~advvi~~~p~~~~~~~   72 (226)
                      ++|.|+|+|.+|..+++.|.+.|+ |+++++++++++.+. .|+.+    ..+++   ++ ++++|.|+++++++.....
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~   87 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIH   87 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHHH
Confidence            478999999999999999999999 999999999988887 66443    12222   22 5679999999998654333


Q ss_pred             HhhcccccccccCCC-cEEEecCC
Q 027255           73 VVFDKGGVLEQICPG-KGYIDMST   95 (226)
Q Consensus        73 v~~~~~~l~~~l~~g-~ivvd~st   95 (226)
                      +.    .....+.++ .+++..++
T Consensus        88 ~~----~~a~~~~~~~~iia~~~~  107 (234)
T 2aef_A           88 CI----LGIRKIDESVRIIAEAER  107 (234)
T ss_dssp             HH----HHHHHHCSSSEEEEECSS
T ss_pred             HH----HHHHHHCCCCeEEEEECC
Confidence            32    122334454 56665544

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.16  E-value=3.1e-06  Score=71.08  Aligned_cols=89  Identities=15%  Similarity=0.140  Sum_probs=62.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHH----HH------CCCcc--cCCHHHHhhhCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDEL----VA------HGATV--GGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l----~~------~g~~~--~~s~~~~~~~advvi~~~p~~~   68 (226)
                      ||+|||+|.||.+++..|+.+|+ +|.++|+++++++..    ..      ...++  +.+. +++++||+||++.+.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            79999999999999999998888 699999998876542    11      12223  3455 67899999999965432


Q ss_pred             ---------------HHHHHhhcccccccccCCCcEEEecCC
Q 027255           69 ---------------AALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        69 ---------------~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                                     .++++.   +.+.+.. |+.+++..|+
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLA---EKIKAYA-KDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEeCC
Confidence                           244454   4455554 6666666543

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=98.16  E-value=4.6e-06  Score=69.65  Aligned_cols=105  Identities=22%  Similarity=0.254  Sum_probs=75.0

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhH-HHHHHCCCcccCCHHHHhh--h-CCeEEEecCCHHHHHHHhhc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIK--K-CTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~~~~~--~-advvi~~~p~~~~~~~v~~~   76 (226)
                      +|.|+|+ |.||+.+++++.+.|++ .++..+|.+. ++  -.|..++.|++++.+  . +|++++++|.. .+.+++  
T Consensus        15 ~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v--   88 (297)
T 2yv2_A           15 RVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAV--   88 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHH--
T ss_pred             EEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHH--
Confidence            5778898 99999999999999998 4555555432 11  148888999999987  5 99999999884 555555  


Q ss_pred             ccccccccCCCcE-EEecCC-CCHHHHHHHHHHHHhcCCcEE
Q 027255           77 KGGVLEQICPGKG-YIDMST-VDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        77 ~~~l~~~l~~g~i-vvd~st-~~~~~~~~l~~~~~~~g~~~l  116 (226)
                       +...   +.|.- +|..++ ......+++.+.+++.|+.++
T Consensus        89 -~ea~---~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi  126 (297)
T 2yv2_A           89 -YEAV---DAGIRLVVVITEGIPVHDTMRFVNYARQKGATII  126 (297)
T ss_dssp             -HHHH---HTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             -HHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence             3332   23332 444454 455667888888888898766

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=98.15  E-value=1.5e-06  Score=73.45  Aligned_cols=121  Identities=12%  Similarity=0.079  Sum_probs=77.1

Q ss_pred             eEEEEecChhHHHHHHHHHhC-------CCeE-EEEcCCchhH------HH----HHHCC-Ccc-cCCHHHHhh--hCCe
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-------GFKV-TVWNRTLSKC------DE----LVAHG-ATV-GGSPAEVIK--KCTI   59 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-------G~~V-~~~dr~~~~~------~~----l~~~g-~~~-~~s~~~~~~--~adv   59 (226)
                      ||+|||+|.||+.+++.|.++       +.+| .++|+++...      ++    ..+.| +.. .-+..+++.  +.|+
T Consensus         6 rVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iDv   85 (325)
T 3ing_A            6 RIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAADL   85 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCSE
T ss_pred             EEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCCE
Confidence            799999999999999999874       3443 3568876521      11    22223 211 115667665  4799


Q ss_pred             EEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCcE-EecCCCCChH
Q 027255           60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHF-LEAPVSGSKQ  125 (226)
Q Consensus        60 vi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~~-ld~pv~g~~~  125 (226)
                      |+.|+|+....+...   +-+...++.|+.||.+++.. ....+++.+.++++|+.+ .++-+.++.|
T Consensus        86 VVe~T~~~~~~~pa~---~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giP  150 (325)
T 3ing_A           86 LVDCTPASRDGVREY---SLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVP  150 (325)
T ss_dssp             EEECCCCCSSSHHHH---HHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSC
T ss_pred             EEECCCCccccchHH---HHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCH
Confidence            999998742211111   11235677899999877632 256778888888888865 4666666644

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=98.14  E-value=5.7e-07  Score=76.24  Aligned_cols=113  Identities=18%  Similarity=0.219  Sum_probs=76.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC---------CeE-EEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG---------FKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G---------~~V-~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      +||||||+|.||+.+++.|.++.         .+| .++||++++.+.+.  ...+++++++++ +.|+|+.|+|+....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~~a   80 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVEAP   80 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcHHH
Confidence            37999999999999999998763         454 47799876543221  123566788888 899999999986444


Q ss_pred             HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      .+.+      ...++.|+.||..+.. .....+++.+.++++ ..+.++-+.++
T Consensus        81 ~~~~------~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~-~~~~Ea~vg~g  127 (332)
T 2ejw_A           81 LRLV------LPALEAGIPLITANKALLAEAWESLRPFAEEG-LIYHEASVMAG  127 (332)
T ss_dssp             HHHH------HHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT-CEECGGGTTTT
T ss_pred             HHHH------HHHHHcCCeEEECCchhHHHHHHHHHHHHHhC-CeEEEEEcccC
Confidence            4333      2456788888875432 114556666666666 44556666665

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.14  E-value=9.5e-06  Score=68.59  Aligned_cols=66  Identities=14%  Similarity=0.187  Sum_probs=50.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCC--CeEEEEcCCchh--HHHHHHCCC--cc-----cCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNG--FKVTVWNRTLSK--CDELVAHGA--TV-----GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G--~~V~~~dr~~~~--~~~l~~~g~--~~-----~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+||| .|.+|..++..|+..|  ++|+++|+++++  ...+.....  ..     .+++.++++++|+||++.+.
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            6899999 7999999999999998  899999988762  222433221  11     22567889999999999753

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.13  E-value=6.5e-06  Score=70.25  Aligned_cols=106  Identities=16%  Similarity=0.167  Sum_probs=70.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-hCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+|+|+|++|...|+.|...|.+|+++|+++++.+...+.+++.. +.+++++ .||+++.|-.     +.++.  ..
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~-----~~~I~--~~  247 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAM-----GGVIT--TE  247 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSC-----SCCBC--HH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhHH-----HhhcC--HH
Confidence            47999999999999999999999999999999876322333566554 5667776 8999886532     22221  01


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      -++.+ +.++|++.+.... +..+-.+.+.++|+.++
T Consensus       248 ~~~~l-k~~iVie~AN~p~-t~~eA~~~L~~~gIlv~  282 (355)
T 1c1d_A          248 VARTL-DCSVVAGAANNVI-ADEAASDILHARGILYA  282 (355)
T ss_dssp             HHHHC-CCSEECCSCTTCB-CSHHHHHHHHHTTCEEC
T ss_pred             HHhhC-CCCEEEECCCCCC-CCHHHHHHHHhCCEEEE
Confidence            12334 3678888876432 21122477778887664

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=98.13  E-value=4.8e-06  Score=70.76  Aligned_cols=90  Identities=18%  Similarity=0.191  Sum_probs=60.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHH-------------------CCCcccCCHHHHhhhCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~-------------------~g~~~~~s~~~~~~~adv   59 (226)
                      +||||+|+|.||+.+++.|.++ ++++. +.++++....++..                   .++.+..++.++..++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            4899999999999999999874 56654 56777665444332                   223333466777789999


Q ss_pred             EEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC
Q 027255           60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        60 vi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~   97 (226)
                      ||.|+|.....+..-       .+++.|+.+|+.+...
T Consensus        82 V~~atp~~~~~~~a~-------~~l~aG~~VId~sp~~  112 (337)
T 1cf2_P           82 VIDCTPEGIGAKNLK-------MYKEKGIKAIFQGGEK  112 (337)
T ss_dssp             EEECCSTTHHHHHHH-------HHHHHTCCEEECTTSC
T ss_pred             EEECCCchhhHHHHH-------HHHHcCCEEEEecCCC
Confidence            999999865443321       2333456677766553

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=98.13  E-value=3.8e-06  Score=60.86  Aligned_cols=101  Identities=13%  Similarity=0.083  Sum_probs=76.1

Q ss_pred             eEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      +|+|||+    +.+|..+.++|.+.||+|+..|+..+.+     .|.....|+.++-+ .|++++++|. +.+.+++   
T Consensus         6 siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v---   75 (122)
T 3ff4_A            6 KTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINP-QNQLSEY---   75 (122)
T ss_dssp             CEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCH-HHHGGGH---
T ss_pred             EEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCH-HHHHHHH---
Confidence            6999998    5689999999999999999988875543     47777888888888 9999999977 6677776   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      +++.+.- ...+|+.....    .+++.+.++++|++++.
T Consensus        76 ~e~~~~g-~k~v~~~~G~~----~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           76 NYILSLK-PKRVIFNPGTE----NEELEEILSENGIEPVI  110 (122)
T ss_dssp             HHHHHHC-CSEEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred             HHHHhcC-CCEEEECCCCC----hHHHHHHHHHcCCeEEC
Confidence            4444332 23455544333    35778888899999884

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.12  E-value=7.5e-06  Score=70.31  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=67.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCC----chhH--------HHHHHC-C-CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT----LSKC--------DELVAH-G-ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~----~~~~--------~~l~~~-g-~~~~~s~~~~~~~advvi~~~p   65 (226)
                      .||.|+|.|.+|..+|+.|...|. +|+++||+    .++.        +.+.+. + .....++.++++++|++|-+..
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa  272 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR  272 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC
Confidence            379999999999999999999998 79999998    6552        334433 1 2235679999999999988864


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCCCHH
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHE   99 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~   99 (226)
                      ..-..++++       +.+.++.+|+++|.-.|+
T Consensus       273 p~l~t~emV-------k~Ma~~pIIfalSNPt~E  299 (388)
T 1vl6_A          273 GNILKPEWI-------KKMSRKPVIFALANPVPE  299 (388)
T ss_dssp             SSCSCHHHH-------TTSCSSCEEEECCSSSCS
T ss_pred             CCccCHHHH-------HhcCCCCEEEEcCCCCCC
Confidence            222333444       446678899999985543

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=98.09  E-value=7.9e-06  Score=68.44  Aligned_cols=105  Identities=13%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchhHH-HHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhc
Q 027255            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~   76 (226)
                      +++|| |+ |.+|+.++++|.+.|++ .+|+.||.+.. +  -.|..+..|++++.+  ..|++++++|. +.+.+++  
T Consensus        15 siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~~~--   88 (305)
T 2fp4_A           15 TKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAAAI--   88 (305)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH--
T ss_pred             cEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcce--ECCeeeechHHHhhhcCCCCEEEEecCH-HHHHHHH--
Confidence            57888 99 99999999999999999 45555555321 1  258888899999998  89999999988 4555655  


Q ss_pred             ccccccccCCC-cEEEecCCC-CHHHHHHHHHHHHhc-CCcEE
Q 027255           77 KGGVLEQICPG-KGYIDMSTV-DHETSIKISRAITSK-GGHFL  116 (226)
Q Consensus        77 ~~~l~~~l~~g-~ivvd~st~-~~~~~~~l~~~~~~~-g~~~l  116 (226)
                       +++.+   .| +.+|..+.. .....+++.+.++++ |+.++
T Consensus        89 -~e~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~li  127 (305)
T 2fp4_A           89 -NEAID---AEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI  127 (305)
T ss_dssp             -HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred             -HHHHH---CCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEE
Confidence             33332   22 344555554 455567888999988 88876

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=98.09  E-value=4.7e-06  Score=71.35  Aligned_cols=112  Identities=17%  Similarity=0.159  Sum_probs=73.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC----CeE-EEEcCCchhHHHHHHC--CCcccCCHHHHhhhC----------------
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG----FKV-TVWNRTLSKCDELVAH--GATVGGSPAEVIKKC----------------   57 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G----~~V-~~~dr~~~~~~~l~~~--g~~~~~s~~~~~~~a----------------   57 (226)
                      +||||||+|.||+.+++.|.++.    .+| .++|++...   +...  |+..++++.+++++.                
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~---~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~   81 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL---ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKT   81 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE---ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTT
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh---hccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhh
Confidence            47999999999999999999863    454 456765432   2222  554445566655433                


Q ss_pred             ----CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCC----CCHHHHHHHHHHHHhcCCcE-EecCCCCC
Q 027255           58 ----TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST----VDHETSIKISRAITSKGGHF-LEAPVSGS  123 (226)
Q Consensus        58 ----dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st----~~~~~~~~l~~~~~~~g~~~-ld~pv~g~  123 (226)
                          |+|+.|+|+..+.+..       ...+..|+.||..+.    .+....++|. .++++|+.| .++.+.++
T Consensus        82 ~~~~DvVV~~t~~~~~a~~~-------~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg~g  148 (358)
T 1ebf_A           82 SPKPVILVDNTSSAYIAGFY-------TKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVGAG  148 (358)
T ss_dssp             CSSCEEEEECSCCHHHHTTH-------HHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTTTT
T ss_pred             ccCCcEEEEcCCChHHHHHH-------HHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccccccC
Confidence                7899999986544333       256778888887553    3446677777 667778665 45655555

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.08  E-value=6.8e-06  Score=67.61  Aligned_cols=73  Identities=18%  Similarity=0.330  Sum_probs=59.6

Q ss_pred             CeEEEEecChh-HHHHHHHHHhC--CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFLGLGIM-GKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvIG~G~m-G~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      .++.|||.|.+ |+++|+.|...  |..|++++++.              .++.+.++++|+||.+++.+..    +.  
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I~--  218 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL----LT--  218 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC----BC--
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc----cC--
Confidence            37899999986 99999999999  89999998765              4678888999999999987552    21  


Q ss_pred             cccccccCCCcEEEecCCC
Q 027255           78 GGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~   96 (226)
                         .+.+++|.+|||.+..
T Consensus       219 ---~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          219 ---ADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             ---GGGSCTTCEEEECCEE
T ss_pred             ---HHHcCCCcEEEEccCC
Confidence               1345789999998864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.08  E-value=9.6e-06  Score=68.68  Aligned_cols=64  Identities=14%  Similarity=0.204  Sum_probs=49.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC-------CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-------GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~-------g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+|.||..+|..|+.+|+  +|.++|+++++++.    +...       .+..+.+.+ .+++||+||++..
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG   96 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAG   96 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccC
Confidence            589999999999999999999987  89999999887654    3321       112234554 5899999999863

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.06  E-value=8e-06  Score=67.44  Aligned_cols=73  Identities=23%  Similarity=0.320  Sum_probs=59.7

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      .++.|||.|. .|+++|+.|...|..|++++++.              .++.+.++++|+||.+++.+..    +.  . 
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~l----I~--~-  218 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGF----IP--G-  218 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTC----BC--T-
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcCc----CC--H-
Confidence            3789999997 59999999999999999998654              4678889999999999987542    21  1 


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                        +.+++|.+|||.+..
T Consensus       219 --~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          219 --DWIKEGAIVIDVGIN  233 (288)
T ss_dssp             --TTSCTTCEEEECCCE
T ss_pred             --HHcCCCcEEEEccCC
Confidence              346799999999864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.06  E-value=1e-05  Score=66.72  Aligned_cols=73  Identities=22%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      .++.|||.|. +|+++|..|...|..|++++++.              .++++.++++|+||.+++.+..    +   . 
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~~----I---~-  219 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF----I---T-  219 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCTTC----B---C-
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCCCCC----C---C-
Confidence            3689999987 79999999999999999998752              4677889999999999987432    2   1 


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                       .+.+++|.+|||.+..
T Consensus       220 -~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          220 -ADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             -GGGSCTTCEEEECCCE
T ss_pred             -HHHcCCCcEEEEeccc
Confidence             1346899999999764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.05  E-value=3e-05  Score=60.73  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=51.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~~~~~~advvi~~~p~   66 (226)
                      |||.|+|. |.+|+.+++.|++.|++|++.+|++++.+.+. .++..     .+...+++.++|+||.+...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            89999995 99999999999999999999999999887764 33322     11112677889999998754

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.04  E-value=1.2e-05  Score=66.81  Aligned_cols=74  Identities=24%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      .++.|||.|. +|+++|+.|...|..|++++++              +.++.+.++++|+||.+++.+..    +.    
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~----  223 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM----VK----  223 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC----
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCccc----CC----
Confidence            3689999996 7999999999999999999865              35678889999999999988542    21    


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                       .+.+++|.+|||.+...
T Consensus       224 -~~~vk~GavVIDVgi~~  240 (301)
T 1a4i_A          224 -GEWIKPGAIVIDCGINY  240 (301)
T ss_dssp             -GGGSCTTCEEEECCCBC
T ss_pred             -HHHcCCCcEEEEccCCC
Confidence             13467999999998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.02  E-value=4e-05  Score=60.26  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=53.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~~~~~~advvi~~~p~   66 (226)
                      |||.|+|. |.+|+.+++.|++.|++|++.+|++++.+.+...++..     .+...++++++|+||.+...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            89999997 99999999999999999999999999887765555432     11112677889999988743

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=98.02  E-value=4.3e-06  Score=73.96  Aligned_cols=68  Identities=18%  Similarity=0.294  Sum_probs=54.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcc----cCC---HHHH-hhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV----GGS---PAEV-IKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~----~~s---~~~~-~~~advvi~~~p~~~   68 (226)
                      |||-|+|+|.+|+.+|+.|...||+|++.|+++++++++.+. ++.+    .++   +.++ +++||+++.++++++
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De   80 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE   80 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence            899999999999999999999999999999999999988754 5432    122   2233 467999998887754

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.01  E-value=1.4e-05  Score=65.89  Aligned_cols=73  Identities=14%  Similarity=0.158  Sum_probs=59.4

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      .++.|||.|. +|+++|..|...|..|++++++.              .++.+.++++|+||.+++.+..    +   . 
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I---~-  218 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL----L---R-  218 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSCTTC----B---C-
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCCCCc----C---C-
Confidence            3689999987 69999999999999999998753              4677889999999999987432    2   1 


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                       .+.+++|.+|||.+..
T Consensus       219 -~~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          219 -SDMVKEGVIVVDVGIN  234 (285)
T ss_dssp             -GGGSCTTEEEEECCCE
T ss_pred             -HHHcCCCeEEEEeccC
Confidence             1446899999999864

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.98  E-value=3.1e-05  Score=65.78  Aligned_cols=87  Identities=16%  Similarity=0.202  Sum_probs=56.6

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeE-EEEcCCchhHHHHHH-CCCccc-----------------CCHHHHhhhCCeEE
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVA-HGATVG-----------------GSPAEVIKKCTITI   61 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V-~~~dr~~~~~~~l~~-~g~~~~-----------------~s~~~~~~~advvi   61 (226)
                      ||||+|+|.||+.+++.|.++ +.+| .+.|++++....+.. .|+...                 .+++++.+++|+||
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~   82 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence            899999999999999999875 3564 466888766544333 244332                 23445556899999


Q ss_pred             EecCCHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255           62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        62 ~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      .|+|.....+..    .   .+++.|..+|+.|.
T Consensus        83 ~aTp~~~s~~~a----~---~~~~aG~kvV~~sa  109 (340)
T 1b7g_O           83 DTTPNGVGAQYK----P---IYLQLQRNAIFQGG  109 (340)
T ss_dssp             ECCSTTHHHHHH----H---HHHHTTCEEEECTT
T ss_pred             ECCCCchhHHHH----H---HHHHcCCeEEEeCC
Confidence            999985433322    1   22334555666554

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.97  E-value=2.1e-06  Score=68.41  Aligned_cols=68  Identities=19%  Similarity=0.177  Sum_probs=47.2

Q ss_pred             CeEEEEecChhHHHHHHH--HHhCCCeEE-EEcCCchhHHHHHH-CCCcccCCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMN--LLRNGFKVT-VWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~--l~~~G~~V~-~~dr~~~~~~~l~~-~g~~~~~s~~~~~~~advvi~~~p~~~   68 (226)
                      ++|+|||+|.+|..+++.  +...|+++. ++|+++++...... .++....++.+++++.|+|++|+|+..
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~  157 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVA  157 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchh
Confidence            479999999999999994  345578755 67999987654322 133345678888866699999999844

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.95  E-value=2.5e-05  Score=62.24  Aligned_cols=65  Identities=17%  Similarity=0.186  Sum_probs=55.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC-cc-----cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TV-----GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~-~~-----~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.|. |.+|+.+++.|++.|++|++.+|++++.+.+...++ ..     ..+..+++.++|+||.+..
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence            68999997 999999999999999999999999999888877666 32     2456677788999998875

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.93  E-value=2.5e-05  Score=64.38  Aligned_cols=73  Identities=25%  Similarity=0.325  Sum_probs=59.1

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      .++.|||.|. +|+++|..|...|..|+++++..              .++++.++++|+||.+++.+..    +   . 
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~~----I---~-  219 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKPGL----V---K-  219 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCTTC----B---C-
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCCCC----C---C-
Confidence            3689999876 89999999999999999998643              3677889999999999987532    2   1 


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                       .+.+++|.+|||.+..
T Consensus       220 -~~~vk~GavVIDvgi~  235 (286)
T 4a5o_A          220 -GEWIKEGAIVIDVGIN  235 (286)
T ss_dssp             -GGGSCTTCEEEECCSC
T ss_pred             -HHHcCCCeEEEEeccc
Confidence             1346899999999865

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.92  E-value=1.9e-05  Score=64.65  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~~~~advvi~~~p~   66 (226)
                      |||.|+|+|.+|+.+++.|+++||+|++.+|++++.+.+...++...    .+++  ++++|+||-+...
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence            68999999999999999999999999999999998888776664331    2233  6789999988743

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.90  E-value=3.5e-05  Score=62.62  Aligned_cols=111  Identities=16%  Similarity=0.173  Sum_probs=66.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecC---C
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLA---D   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p---~   66 (226)
                      ++|.|||+|.+|+.++++|++.|. +++++|++.-....+..+        |-..+....+.+.  +.++-+...+   +
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~  111 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLD  111 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCC
Confidence            479999999999999999999997 899999987222222211        1111111112121  1333333332   2


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      ...+.+.+          ..-.+||+++. .+.....+.+.+.+.++.++++.+.|
T Consensus       112 ~~~~~~~~----------~~~DvVi~~~d-~~~~~~~l~~~~~~~~~p~i~~~~~g  156 (249)
T 1jw9_B          112 DAELAALI----------AEHDLVLDCTD-NVAVRNQLNAGCFAAKVPLVSGAAIR  156 (249)
T ss_dssp             HHHHHHHH----------HTSSEEEECCS-SHHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred             HhHHHHHH----------hCCCEEEEeCC-CHHHHHHHHHHHHHcCCCEEEeeecc
Confidence            12222222          23367777764 56667777888888888888875554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.88  E-value=2.6e-05  Score=65.82  Aligned_cols=114  Identities=13%  Similarity=0.035  Sum_probs=74.1

Q ss_pred             CeEEEEecChhHHH-HHHHHHhCCCeEEEEcCCch--hHHHHHHCCCccc--CCHHHHh-hhCCeEEEe--cC-CHHHHH
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS--KCDELVAHGATVG--GSPAEVI-KKCTITIGM--LA-DPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~--~~~~l~~~g~~~~--~s~~~~~-~~advvi~~--~p-~~~~~~   71 (226)
                      |+|.|||.|.+|.+ +|+.|.+.|++|+++|+++.  ..+.+.+.|+.+.  .+++++. .++|+|+.+  +| +...+.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHHH
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHHH
Confidence            57999999999995 99999999999999998643  5567888888764  3455554 478998875  33 323333


Q ss_pred             HHhh------ccccccc-cc-CCCcEEEecCC-CCHHHHHHHHHHHHhcCCc
Q 027255           72 SVVF------DKGGVLE-QI-CPGKGYIDMST-VDHETSIKISRAITSKGGH  114 (226)
Q Consensus        72 ~v~~------~~~~l~~-~l-~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~  114 (226)
                      ....      ++.+++. .+ +...+|--+.| ....++.-+++.+.+.|..
T Consensus        85 ~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~  136 (326)
T 3eag_A           85 AILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLA  136 (326)
T ss_dssp             HHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCC
Confidence            3321      1112222 12 23345555555 4556666677778777753

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.84  E-value=0.00011  Score=61.27  Aligned_cols=65  Identities=14%  Similarity=0.105  Sum_probs=48.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCC--eEEEEcC--CchhHHH----HHHC-----CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGF--KVTVWNR--TLSKCDE----LVAH-----GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~--~V~~~dr--~~~~~~~----l~~~-----g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|+| .|.+|++++..|+..|+  ++.++|+  ++++++.    +...     ...+..+..++++++|+||++..
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG   79 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCC
Confidence            8999999 99999999999998886  6889999  7765432    2221     22232234677899999999875

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.83  E-value=3.5e-05  Score=64.14  Aligned_cols=63  Identities=19%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHH----CC--Cc--ccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA----HG--AT--VGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~----~g--~~--~~~s~~~~~~~advvi~~~   64 (226)
                      |||+|||+|.+|+++|..|..++.  ++.++|+++++++-    +..    .+  ..  ...+. +.+++||+|+++.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEec
Confidence            899999999999999999988774  79999999865432    322    11  11  12333 5678999999986

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.81  E-value=5.6e-05  Score=66.58  Aligned_cols=114  Identities=18%  Similarity=0.131  Sum_probs=74.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc----hhHHHHHHCCCccc--CCHHHHhhh-CCeEEEec--CC-HHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL----SKCDELVAHGATVG--GSPAEVIKK-CTITIGML--AD-PAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~----~~~~~l~~~g~~~~--~s~~~~~~~-advvi~~~--p~-~~~~   70 (226)
                      ++|.|||+|..|.+.|+.|.+.|++|+++|+++    ...+.+.+.|+.+.  ..+.+..++ +|+|+.+.  |. ...+
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCChhH
Confidence            379999999999999999999999999999864    34567777888664  234455566 89888763  32 2223


Q ss_pred             HHHhh------cccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCc
Q 027255           71 LSVVF------DKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGH  114 (226)
Q Consensus        71 ~~v~~------~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~  114 (226)
                      .....      ++.+++..+.+..+|--+.| ....++.-++..+.+.|..
T Consensus        90 ~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~  140 (451)
T 3lk7_A           90 KKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQR  140 (451)
T ss_dssp             HHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence            22221      11122222334566655555 4556666777778877764

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.78  E-value=5.3e-05  Score=64.82  Aligned_cols=87  Identities=17%  Similarity=0.209  Sum_probs=56.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHH-----CCC---cc-cCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA-----HGA---TV-GGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~-----~g~---~~-~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |||+|+| .|.+|+.+.+.|.++. +++...+...+.-.++..     .+.   .. ..+ ++.++++|+||.|+|....
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~s   95 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGTT   95 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTTH
T ss_pred             cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchhH
Confidence            3799999 8999999999999875 376666443322112211     121   11 112 4455689999999998665


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .+.+-       .. +.|..+||.|+.
T Consensus        96 ~~~a~-------~~-~aG~~VId~sa~  114 (359)
T 1xyg_A           96 QEIIK-------EL-PTALKIVDLSAD  114 (359)
T ss_dssp             HHHHH-------TS-CTTCEEEECSST
T ss_pred             HHHHH-------HH-hCCCEEEECCcc
Confidence            54432       33 578899999974

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.76  E-value=0.00017  Score=60.56  Aligned_cols=66  Identities=14%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhC-C--CeEEEEcCCch---hHHHHHHCCC--ccc----CCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRN-G--FKVTVWNRTLS---KCDELVAHGA--TVG----GSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~-G--~~V~~~dr~~~---~~~~l~~~g~--~~~----~s~~~~~~~advvi~~~p~   66 (226)
                      |||+||| +|.+|..++..|... +  .++.++|+++.   ....+.....  .+.    ++..+.++++|+||++.+.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence            8999999 899999999999875 5  47999999872   2333433221  222    3567888999999998743

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.76  E-value=1.7e-05  Score=65.13  Aligned_cols=66  Identities=18%  Similarity=0.141  Sum_probs=52.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p~   66 (226)
                      |||.|.|. |.+|+.+++.|.+. |++|++..|++++...+...++.+       ..+..++++++|+||.+...
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            89999995 99999999999987 999999999998876665445432       22355677889999998753

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.76  E-value=2.7e-05  Score=62.21  Aligned_cols=65  Identities=17%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecCC
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p~   66 (226)
                      +|.|.| .|.+|+.+++.|++.| ++|++++|++++.+.+...++..       ..+..++++++|+||.+...
T Consensus        25 ~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~   98 (236)
T 3qvo_A           25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG   98 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred             EEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence            588888 6999999999999999 89999999988765443333221       22345667889999988754

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.75  E-value=7.1e-05  Score=63.25  Aligned_cols=65  Identities=14%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCC----chhHHH----HHHC------CCcccCCHHHHhhhCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRT----LSKCDE----LVAH------GATVGGSPAEVIKKCT   58 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~----~~~~~~----l~~~------g~~~~~s~~~~~~~ad   58 (226)
                      |||.|+|+ |.+|++++..|+..|+       +|.++|++    +++.+.    +...      .+....+..++++++|
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD   85 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDAD   85 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCC
Confidence            58999998 9999999999998885       89999998    544432    3331      1223467889999999


Q ss_pred             eEEEecC
Q 027255           59 ITIGMLA   65 (226)
Q Consensus        59 vvi~~~p   65 (226)
                      +||.+..
T Consensus        86 ~Vi~~ag   92 (329)
T 1b8p_A           86 VALLVGA   92 (329)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9998864

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.73  E-value=3.5e-05  Score=65.82  Aligned_cols=88  Identities=20%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCC-CeEEEEcCCch----hHHHHHH-----------CCCccc-CCHHHHhh-hCCeEEE
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVWNRTLS----KCDELVA-----------HGATVG-GSPAEVIK-KCTITIG   62 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G-~~V~~~dr~~~----~~~~l~~-----------~g~~~~-~s~~~~~~-~advvi~   62 (226)
                      ||+|+| .|.+|+.+.+.|.++. ++|...+++++    .......           ...... .+++++.+ ++|+||+
T Consensus        10 kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~   89 (354)
T 1ys4_A           10 KVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFS   89 (354)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEEE
T ss_pred             eEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEEE
Confidence            899999 8999999999998764 57766643221    1222111           111111 24555556 8999999


Q ss_pred             ecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        63 ~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      |+|..... +..   .   ..+..|..|||.|..
T Consensus        90 atp~~~~~-~~a---~---~~~~aG~~VId~s~~  116 (354)
T 1ys4_A           90 ALPSDLAK-KFE---P---EFAKEGKLIFSNASA  116 (354)
T ss_dssp             CCCHHHHH-HHH---H---HHHHTTCEEEECCST
T ss_pred             CCCchHHH-HHH---H---HHHHCCCEEEECCch
Confidence            99885433 333   2   234568889998864

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.72  E-value=3.9e-05  Score=64.75  Aligned_cols=71  Identities=10%  Similarity=0.040  Sum_probs=55.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc----CCHH---HH-hhhCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPA---EV-IKKCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~---~~-~~~advvi~~~p~~~~~~~   72 (226)
                      ++|.|+|+|..|+.+++.|.+.|+ |.+.|+++++.+ +.+.+..+.    .+++   ++ ++++|.|++++++++....
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~  193 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIH  193 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHHH
Confidence            368999999999999999999999 999999999998 877765431    2222   23 4678999999988654433


Q ss_pred             H
Q 027255           73 V   73 (226)
Q Consensus        73 v   73 (226)
                      +
T Consensus       194 ~  194 (336)
T 1lnq_A          194 C  194 (336)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.70  E-value=5.7e-05  Score=64.30  Aligned_cols=87  Identities=13%  Similarity=0.075  Sum_probs=56.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHH--------CCCcccCCHHHHhhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA--------HGATVGGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~--------~g~~~~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      |||+|+| .|.+|+.+.+.|.++.. ++....+..+.-.++.+        .... ..+.++ +.++|+||.|+|.....
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~-~~~vDvV~~a~g~~~s~   82 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK-LEPADILVLALPHGVFA   82 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG-CCCCSEEEECCCTTHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH-hcCCCEEEEcCCcHHHH
Confidence            4799999 69999999999987654 76665443332222211        1111 223334 47899999999986543


Q ss_pred             HHHhhcccccccccCCCcEEEecCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      + ..   .   ..+..|..+||.|.-
T Consensus        83 ~-~a---~---~~~~aG~~VId~Sa~  101 (345)
T 2ozp_A           83 R-EF---D---RYSALAPVLVDLSAD  101 (345)
T ss_dssp             H-TH---H---HHHTTCSEEEECSST
T ss_pred             H-HH---H---HHHHCCCEEEEcCcc
Confidence            3 32   1   334678889999873

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.69  E-value=2.7e-05  Score=66.04  Aligned_cols=89  Identities=12%  Similarity=0.127  Sum_probs=57.4

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhC-CCeEEEEcCCc---h---hHHHH----HHC-CCcccC--CHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTVWNRTL---S---KCDEL----VAH-GATVGG--SPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~-G~~V~~~dr~~---~---~~~~l----~~~-g~~~~~--s~~~~~~~advvi~~~p   65 (226)
                      |||+|+| .|.+|..+.+.|.++ .+++.....+.   +   ++...    ... ...+..  +.+++.+++|+||+|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            4899999 599999999999984 56766553222   2   22221    111 222222  44555488999999998


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      ... .++..   .   ..++.|..+||.|+-
T Consensus        85 ~~~-s~~~~---~---~~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEV-SHDLA---P---QFLEAGCVVFDLSGA  108 (337)
T ss_dssp             HHH-HHHHH---H---HHHHTTCEEEECSST
T ss_pred             hHH-HHHHH---H---HHHHCCCEEEEcCCc
Confidence            854 33443   2   234578999999975

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.67  E-value=0.00025  Score=60.30  Aligned_cols=87  Identities=16%  Similarity=0.114  Sum_probs=55.2

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHH---------------------CCCcccCCHHHHhhhCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA---------------------HGATVGGSPAEVIKKCT   58 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~---------------------~g~~~~~s~~~~~~~ad   58 (226)
                      ||||+|+|.+|+.+++.|..+ +++|. +.|++++....+.+                     .++.+..++.++..++|
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD   83 (343)
T 2yyy_A            4 KVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDAD   83 (343)
T ss_dssp             EEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCCC
Confidence            899999999999999999876 56755 44655554433222                     23333334555556899


Q ss_pred             eEEEecCCHHHHHHHhhcccccccccCCCcEEEecC
Q 027255           59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        59 vvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      +|+.|+|.....+..    +  ..+++.|+.||+.+
T Consensus        84 iV~eatg~~~s~~~a----~--~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           84 IVVDGAPKKIGKQNL----E--NIYKPHKVKAILQG  113 (343)
T ss_dssp             EEEECCCTTHHHHHH----H--HTTTTTTCEEEECT
T ss_pred             EEEECCCccccHHHH----H--HHHHHCCCEEEECC
Confidence            999999875433322    1  13445566666543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.67  E-value=0.00025  Score=56.57  Aligned_cols=110  Identities=23%  Similarity=0.196  Sum_probs=72.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHCC-CcccC--CHHHHhhhCCeEEEecCCHHHHHHHhh-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG--SPAEVIKKCTITIGMLADPAAALSVVF-   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~--s~~~~~~~advvi~~~p~~~~~~~v~~-   75 (226)
                      ++|.|||.|.+|..-++.|++.|.+|++++++.. .++.+.+.+ +....  -..+.++++|+||.++.++..-..+.. 
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~N~~I~~~  111 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAVNKFVKQH  111 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHHHHHHHHH
Confidence            4789999999999999999999999999987654 355565553 33321  112345789999998866543333321 


Q ss_pred             cccccc---------------cccCCCcEEEecCC--CCHHHHHHHHHHHHh
Q 027255           76 DKGGVL---------------EQICPGKGYIDMST--VDHETSIKISRAITS  110 (226)
Q Consensus        76 ~~~~l~---------------~~l~~g~ivvd~st--~~~~~~~~l~~~~~~  110 (226)
                      ...++.               .....|.+.|-.||  .+|..++.+.+.+.+
T Consensus       112 ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~  163 (223)
T 3dfz_A          112 IKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSS  163 (223)
T ss_dssp             SCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            101110               11223556666666  489999998888865

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.63  E-value=4.1e-05  Score=65.36  Aligned_cols=87  Identities=17%  Similarity=0.147  Sum_probs=55.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCC-----C-eEEEEc--CCchh-HHH----HHH-CCCccc-CCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNG-----F-KVTVWN--RTLSK-CDE----LVA-HGATVG-GSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G-----~-~V~~~d--r~~~~-~~~----l~~-~g~~~~-~s~~~~~~~advvi~~~   64 (226)
                      |||+|+| .|.+|+.+.+.|.+++     + ++....  ++..+ ...    +.. ...... .+. +.+.++|+||.|+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al   88 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL   88 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence            4899999 8999999999999887     3 666654  22222 221    111 122222 233 3456899999999


Q ss_pred             CCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        65 p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      |... .++++   .   .. ..|..+||.|+.
T Consensus        89 g~~~-s~~~~---~---~~-~~G~~vIDlSa~  112 (352)
T 2nqt_A           89 PHGH-SAVLA---Q---QL-SPETLIIDCGAD  112 (352)
T ss_dssp             TTSC-CHHHH---H---HS-CTTSEEEECSST
T ss_pred             CCcc-hHHHH---H---HH-hCCCEEEEECCC
Confidence            8853 33443   2   22 568899999975

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.62  E-value=4.8e-05  Score=66.64  Aligned_cols=105  Identities=17%  Similarity=0.258  Sum_probs=68.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC---eEEEEc----CC--chhHHH---HH-------HC-CCc-ccCCHHHHhhhCCeE
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF---KVTVWN----RT--LSKCDE---LV-------AH-GAT-VGGSPAEVIKKCTIT   60 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~---~V~~~d----r~--~~~~~~---l~-------~~-g~~-~~~s~~~~~~~advv   60 (226)
                      +|.|+|+|.+|.+++..|...|.   +|+++|    |+  ..+.+.   +.       .. +.. ...++.++++++|++
T Consensus       188 rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVl  267 (439)
T 2dvm_A          188 TLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVL  267 (439)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEE
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCCEE
Confidence            68999999999999999999998   799999    87  222111   22       11 111 245688999999999


Q ss_pred             EEecCC--HHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           61 IGMLAD--PAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        61 i~~~p~--~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      |.++|.  .-.-++.+       ..+.++.+|+|++.-.++   .+.+.+.+.|...+
T Consensus       268 InaT~~~~G~~~~e~v-------~~m~~~~iVfDLynP~~t---~~~~~A~~~G~~iv  315 (439)
T 2dvm_A          268 ISFTRPGPGVIKPQWI-------EKMNEDAIVFPLANPVPE---ILPEEAKKAGARIV  315 (439)
T ss_dssp             EECSCCCSSSSCHHHH-------TTSCTTCEEEECCSSSCS---SCHHHHHHHTCSEE
T ss_pred             EEcCCCccCCCChHHH-------HhcCCCCEEEECCCCCCc---chHHHHHHcCCeEE
Confidence            999986  22112222       345677899999543332   23334444566655

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.60  E-value=4.5e-05  Score=58.95  Aligned_cols=66  Identities=20%  Similarity=0.257  Sum_probs=49.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p~   66 (226)
                      |+|.|+|. |.+|+.+++.|++.|++|++.+|++++.+.+...++..       ..+..++++++|+||.+...
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence            57999998 99999999999999999999999987654332223221       12344667789999988753

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.59  E-value=8.8e-05  Score=58.41  Aligned_cols=66  Identities=17%  Similarity=0.345  Sum_probs=51.1

Q ss_pred             Ce-EEEEe-cChhHHHHHHHHH-hCCCeEEEEcCCch-hHHHHHHC--CCcc-------cCCHHHHhhhCCeEEEecCC
Q 027255            1 ME-VGFLG-LGIMGKAISMNLL-RNGFKVTVWNRTLS-KCDELVAH--GATV-------GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~-IgvIG-~G~mG~~~A~~l~-~~G~~V~~~dr~~~-~~~~l~~~--g~~~-------~~s~~~~~~~advvi~~~p~   66 (226)
                      || |.|+| .|.+|+.+++.|+ +.|++|++.+|+++ +.+.+...  ++..       ..+..++++++|+||.+...
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~   83 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME   83 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence            45 89999 5999999999999 89999999999998 87776422  2211       12345677889999998864

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.58  E-value=6.6e-05  Score=66.63  Aligned_cols=64  Identities=13%  Similarity=0.165  Sum_probs=46.1

Q ss_pred             CeEEEEecChhHHH--HHHHHHh----C--CCeEEEEcCCchhHHHHH--------HCC----CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKA--ISMNLLR----N--GFKVTVWNRTLSKCDELV--------AHG----ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~--~A~~l~~----~--G~~V~~~dr~~~~~~~l~--------~~g----~~~~~s~~~~~~~advv   60 (226)
                      |||+|||.|+.|..  +...++.    .  +.+|.++|.++++++...        ..|    +..+++.++++++||+|
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V   80 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI   80 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence            89999999998754  3333432    1  347999999998865421        113    34477899999999999


Q ss_pred             EEec
Q 027255           61 IGML   64 (226)
Q Consensus        61 i~~~   64 (226)
                      |++.
T Consensus        81 i~~~   84 (477)
T 3u95_A           81 INTA   84 (477)
T ss_dssp             EECC
T ss_pred             EECc
Confidence            9885

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.53  E-value=3.4e-05  Score=60.74  Aligned_cols=64  Identities=16%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC-----ccc---CCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-----TVG---GSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~-----~~~---~s~~~~~~~advvi~~~p~   66 (226)
                      |||.|+| .|.+|+.+++.|++.|++|++.+|++++.+.+  .++     ...   .+..++++++|+||.+...
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~   73 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS   73 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence            8999999 69999999999999999999999998765433  121     112   2344556778999988754

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=97.51  E-value=0.00027  Score=59.83  Aligned_cols=88  Identities=13%  Similarity=0.180  Sum_probs=57.0

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeEE-EEcC--CchhHHHHHHC----C----C---------------ccc--CCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKVT-VWNR--TLSKCDELVAH----G----A---------------TVG--GSPAE   52 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr--~~~~~~~l~~~----g----~---------------~~~--~s~~~   52 (226)
                      ||||+|+|.+|+.+++.|.++ +.+|. +.|+  +++.+..+.+.    |    .               .+.  .++++
T Consensus         5 kVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~~   84 (335)
T 1u8f_O            5 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSK   84 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHHH
Confidence            899999999999999998874 56755 4564  66666555442    1    0               011  25666


Q ss_pred             H-h--hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           53 V-I--KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        53 ~-~--~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      + +  .++|+||.|+|.....+..-       .+++.|..+|++|.-
T Consensus        85 l~~~~~~vDvV~eatg~~~~~e~a~-------~~l~aGak~V~iSap  124 (335)
T 1u8f_O           85 IKWGDAGAEYVVESTGVFTTMEKAG-------AHLQGGAKRVIISAP  124 (335)
T ss_dssp             CCTTTTTCCEEEECSSSCCSHHHHG-------GGGGGTCSEEEESSC
T ss_pred             CccccCCCCEEEECCCchhhHHHHH-------HHHhCCCeEEEeccC
Confidence            5 2  47899999999855443322       345566556666543

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.43  E-value=2.7e-05  Score=61.77  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=48.0

Q ss_pred             eEEEEecChhHHHHHHHHHh-CCCeEE-EEcCCchhHHHHHH-CCCcccCCHHHHhh-hCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVA-HGATVGGSPAEVIK-KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~-~G~~V~-~~dr~~~~~~~l~~-~g~~~~~s~~~~~~-~advvi~~~p~~~   68 (226)
                      +|+|||+|.+|..+++.+.. .|+++. ++|.++++...... ..+...+++.++++ +.|+|++|+|+..
T Consensus        82 rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~  152 (211)
T 2dt5_A           82 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPREA  152 (211)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHHH
T ss_pred             EEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCchh
Confidence            79999999999999996322 277754 67999987654322 12333567778775 5899999999754

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.43  E-value=2.9e-05  Score=65.93  Aligned_cols=88  Identities=14%  Similarity=0.080  Sum_probs=53.1

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCC---CeEEEEc-C-CchhHHHHHHCCCcccC-CHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNG---FKVTVWN-R-TLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G---~~V~~~d-r-~~~~~~~l~~~g~~~~~-s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      |||+|+| .|.+|+.+.+.|.+++   +++...+ + +..+.-.+....+.... ++ +.++++|+||.|+|..... +.
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~-~~~~~vDvVf~a~g~~~s~-~~   81 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEE-FDWSQVHIALFSAGGELSA-KW   81 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGG-CCGGGCSEEEECSCHHHHH-HH
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCCh-HHhcCCCEEEECCCchHHH-HH
Confidence            5899999 9999999999999874   3555544 2 22111011111111111 12 2346899999999875433 33


Q ss_pred             hhcccccccccCCCcEEEecCCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .   .   .+++.|..+||.|+.
T Consensus        82 a---~---~~~~~G~~vId~s~~   98 (336)
T 2r00_A           82 A---P---IAAEAGVVVIDNTSH   98 (336)
T ss_dssp             H---H---HHHHTTCEEEECSST
T ss_pred             H---H---HHHHcCCEEEEcCCc
Confidence            3   2   234567889998864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.42  E-value=0.00012  Score=63.04  Aligned_cols=90  Identities=19%  Similarity=0.170  Sum_probs=64.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCc-------hhHHHHH----HC-C-CcccCCHHHHhhhCCeEEEecCCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------SKCDELV----AH-G-ATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~-------~~~~~l~----~~-g-~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      ||.|+|.|..|.++|+.+...|. +|+++|++-       +.+..++    .. . .....++.|+++++|++|-+....
T Consensus       190 kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sapg  269 (398)
T 2a9f_A          190 SIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSAPG  269 (398)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCSTT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCCCC
Confidence            79999999999999999999998 899999873       2222222    11 1 112457999999999887765322


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCCCH
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~   98 (226)
                      ...++++       ..+.++.+|+++|+-.|
T Consensus       270 l~T~EmV-------k~Ma~~pIIfalsNPt~  293 (398)
T 2a9f_A          270 VLKAEWI-------SKMAARPVIFAMANPIP  293 (398)
T ss_dssp             CCCHHHH-------HTSCSSCEEEECCSSSC
T ss_pred             CCCHHHH-------HhhCCCCEEEECCCCCc
Confidence            2333343       66779999999998655

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.41  E-value=0.00053  Score=58.00  Aligned_cols=44  Identities=20%  Similarity=0.060  Sum_probs=39.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|+ +|++.++++++.+.+.+.|+.
T Consensus       170 ~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~  214 (348)
T 2d8a_A          170 SVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD  214 (348)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence            68999999999999999988999 899999999998887776753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.41  E-value=7.9e-05  Score=58.74  Aligned_cols=65  Identities=23%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC-------cccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-------TVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~-------~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |+|.|+| .|.+|+.+++.|++.|++|++.+|++++.+.+. .++       .-..+..++++++|+||.+...
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            5899998 599999999999999999999999988754332 121       1122345677889999988754

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.39  E-value=0.00015  Score=61.78  Aligned_cols=88  Identities=14%  Similarity=0.203  Sum_probs=54.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCC-CeEEEEc-CCchhHHHHHH--------------CCCcccC-CHHHHhhhCCeEEE
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNG-FKVTVWN-RTLSKCDELVA--------------HGATVGG-SPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G-~~V~~~d-r~~~~~~~l~~--------------~g~~~~~-s~~~~~~~advvi~   62 (226)
                      |||+|+| .|.+|+.+.+.|.++. +++.... .+.+..+.+.+              ....... ++++ ++++|+||+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~   83 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS   83 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence            3799999 7999999999998764 4666553 22221111211              1122221 3344 478999999


Q ss_pred             ecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        63 ~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      |+|...+.+ ..   .   ..++.|..|||.|+.
T Consensus        84 atp~~~s~~-~a---~---~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           84 ALPNELAES-IE---L---ELVKNGKIVVSNASP  110 (350)
T ss_dssp             CCCHHHHHH-HH---H---HHHHTTCEEEECSST
T ss_pred             CCChHHHHH-HH---H---HHHHCCCEEEECCcc
Confidence            998754433 33   2   334568889998864

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.37  E-value=0.00034  Score=57.60  Aligned_cols=66  Identities=21%  Similarity=0.334  Sum_probs=49.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCc------hhHHH---HHHCCCccc-------CCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL------SKCDE---LVAHGATVG-------GSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~------~~~~~---l~~~g~~~~-------~s~~~~~~~advvi~~   63 (226)
                      |+|.|+|. |.+|+.+++.|++.|++|++.+|++      ++.+.   +...|+...       .++.++++++|+||.+
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~   84 (308)
T 1qyc_A            5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIST   84 (308)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEEC
Confidence            47999996 9999999999999999999999974      33332   233454331       2345677889999998


Q ss_pred             cCC
Q 027255           64 LAD   66 (226)
Q Consensus        64 ~p~   66 (226)
                      .+.
T Consensus        85 a~~   87 (308)
T 1qyc_A           85 VGS   87 (308)
T ss_dssp             CCG
T ss_pred             Ccc
Confidence            754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.36  E-value=0.0024  Score=54.52  Aligned_cols=44  Identities=23%  Similarity=0.272  Sum_probs=39.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus       198 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~  242 (376)
T 1e3i_A          198 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT  242 (376)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence            68999999999998888888898 799999999999888887864

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.35  E-value=0.0004  Score=58.43  Aligned_cols=66  Identities=20%  Similarity=0.274  Sum_probs=50.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCc----hhHH---HHHHCCCcc-------cCCHHHHhh--hCCeEEEe
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL----SKCD---ELVAHGATV-------GGSPAEVIK--KCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~----~~~~---~l~~~g~~~-------~~s~~~~~~--~advvi~~   63 (226)
                      |+|.|+|. |.+|+.+++.|++.||+|++.+|++    ++.+   .+...++..       ..++.++++  ++|+||.+
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~   90 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVST   90 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEEC
Confidence            47999998 9999999999999999999999977    4443   333445433       224556777  89999998


Q ss_pred             cCC
Q 027255           64 LAD   66 (226)
Q Consensus        64 ~p~   66 (226)
                      ...
T Consensus        91 a~~   93 (346)
T 3i6i_A           91 VGG   93 (346)
T ss_dssp             CCG
T ss_pred             Cch
Confidence            764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.35  E-value=0.0002  Score=59.91  Aligned_cols=65  Identities=14%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.|. |.+|+.+++.|++.|++|++.+|++++.+.+...++..       ..+..++++++|+||-+..
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            68999995 99999999999999999999999987765554434322       1234466778999998764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.34  E-value=0.0018  Score=55.41  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=53.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCccc-------CCHHHHhh-----hCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-------~s~~~~~~-----~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+..+       .+..+.+.     ..|+||-++..+.
T Consensus       196 ~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~  275 (378)
T 3uko_A          196 NVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVS  275 (378)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHH
Confidence            68899999999988888888898 79999999999998888786532       12223222     2677777776654


Q ss_pred             HHHHHh
Q 027255           69 AALSVV   74 (226)
Q Consensus        69 ~~~~v~   74 (226)
                      .++..+
T Consensus       276 ~~~~~~  281 (378)
T 3uko_A          276 VMRAAL  281 (378)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.34  E-value=0.0028  Score=54.07  Aligned_cols=44  Identities=23%  Similarity=0.275  Sum_probs=39.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus       194 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~  238 (374)
T 2jhf_A          194 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT  238 (374)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence            68899999999999888888998 799999999999888877764

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.33  E-value=0.00018  Score=58.72  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=52.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.|. |.+|+.+++.|++.  ||+|++.+|++++.+.+...++..       ..+..++++++|+||.+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            68999987 99999999999998  999999999988877776555432       1234566778999998764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.32  E-value=0.0024  Score=54.45  Aligned_cols=73  Identities=16%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccC-------CHHHHhh-----hCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG-------SPAEVIK-----KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~-------s~~~~~~-----~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+..+-       +..+.+.     ..|+||-++..+.
T Consensus       194 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~  273 (373)
T 1p0f_A          194 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIE  273 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHH
Confidence            68999999999988888877898 799999999999888888864321       2222222     3677777775544


Q ss_pred             HHHHHh
Q 027255           69 AALSVV   74 (226)
Q Consensus        69 ~~~~v~   74 (226)
                      .+...+
T Consensus       274 ~~~~~~  279 (373)
T 1p0f_A          274 TMMNAL  279 (373)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.32  E-value=0.0011  Score=55.96  Aligned_cols=44  Identities=20%  Similarity=0.176  Sum_probs=39.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus       167 ~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~  210 (339)
T 1rjw_A          167 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD  210 (339)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCC
Confidence            68999999999999999989999999999999999888777754

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.31  E-value=0.00035  Score=57.64  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=35.8

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++.|+| .|.+|++++..|++.|++|++++|++++.+++.+
T Consensus       121 ~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~  161 (287)
T 1lu9_A          121 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD  161 (287)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence            678999 9999999999999999999999999988776643

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.31  E-value=0.00034  Score=57.56  Aligned_cols=66  Identities=20%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCc-------hhHHHH---HHCCCcc-------cCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL-------SKCDEL---VAHGATV-------GGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~-------~~~~~l---~~~g~~~-------~~s~~~~~~~advvi~   62 (226)
                      |+|.|+|. |.+|+.+++.|++.||+|++.+|++       ++.+.+   ...++..       ..++.++++++|+||.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   82 (307)
T 2gas_A            3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVIC   82 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             cEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEEE
Confidence            57999996 9999999999999999999999987       554433   3345433       1234567778999999


Q ss_pred             ecCC
Q 027255           63 MLAD   66 (226)
Q Consensus        63 ~~p~   66 (226)
                      +.+.
T Consensus        83 ~a~~   86 (307)
T 2gas_A           83 AAGR   86 (307)
T ss_dssp             CSSS
T ss_pred             CCcc
Confidence            8764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.30  E-value=0.0034  Score=53.53  Aligned_cols=73  Identities=16%  Similarity=0.222  Sum_probs=51.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccC-------CHHHHhh-----hCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG-------SPAEVIK-----KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~-------s~~~~~~-----~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+..+-       +..+.+.     ..|+||-++..+.
T Consensus       195 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  274 (374)
T 1cdo_A          195 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVG  274 (374)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHH
Confidence            68899999999999888888998 799999999999888887864321       2223222     3577777765544


Q ss_pred             HHHHHh
Q 027255           69 AALSVV   74 (226)
Q Consensus        69 ~~~~v~   74 (226)
                      .+...+
T Consensus       275 ~~~~~~  280 (374)
T 1cdo_A          275 VMRNAL  280 (374)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.30  E-value=0.00039  Score=58.81  Aligned_cols=88  Identities=15%  Similarity=0.180  Sum_probs=64.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-CCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+..+ .+.+++.+..|+||-++..+..+...+      
T Consensus       179 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~~------  252 (348)
T 3two_A          179 KVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYL------  252 (348)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHHH------
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHHH------
Confidence            6889999999999988888899999999999999998888886532 333333336788888887654555554      


Q ss_pred             ccccCCCcEEEecCCC
Q 027255           81 LEQICPGKGYIDMSTV   96 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~   96 (226)
                       ..++++..++..+..
T Consensus       253 -~~l~~~G~iv~~G~~  267 (348)
T 3two_A          253 -KLLTYNGDLALVGLP  267 (348)
T ss_dssp             -TTEEEEEEEEECCCC
T ss_pred             -HHHhcCCEEEEECCC
Confidence             445556666665543

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.30  E-value=0.00012  Score=63.12  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=58.9

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCC---eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~---~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      ||.|||. |..|..-++.+...|.   .|++||+++.+.      |...     +.+.++|+||.|+.-+.....++.  
T Consensus       216 kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~~-----~~i~~aDivIn~vlig~~aP~Lvt--  282 (394)
T 2qrj_A          216 TVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGPF-----DEIPQADIFINCIYLSKPIAPFTN--  282 (394)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSCC-----THHHHSSEEEECCCCCSSCCCSCC--
T ss_pred             eEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCch-----hhHhhCCEEEECcCcCCCCCcccC--
Confidence            6889999 9999999999999998   899999987321      3321     346699999999975222111221  


Q ss_pred             ccccccc-CCCcEEEecCC
Q 027255           78 GGVLEQI-CPGKGYIDMST   95 (226)
Q Consensus        78 ~~l~~~l-~~g~ivvd~st   95 (226)
                      ++.++.+ ++|.+|||.+.
T Consensus       283 ~e~v~~m~k~gsVIVDVA~  301 (394)
T 2qrj_A          283 MEKLNNPNRRLRTVVDVSA  301 (394)
T ss_dssp             HHHHCCTTCCCCEEEETTC
T ss_pred             HHHHhcCcCCCeEEEEEec
Confidence            2233567 89999999975

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.30  E-value=0.00045  Score=57.28  Aligned_cols=65  Identities=26%  Similarity=0.347  Sum_probs=49.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCch-hHHH---HHHCCCcc-------cCCHHHHhhhCCeEEEecCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS-KCDE---LVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~---l~~~g~~~-------~~s~~~~~~~advvi~~~p~   66 (226)
                      +|.|+|. |.+|+.+++.|++.|++|++.+|+++ +.+.   +...++.+       ..++.++++++|+||.+.+.
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             eEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence            7999995 99999999999999999999999875 4332   33455543       12355677889999998753

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.29  E-value=6e-05  Score=64.59  Aligned_cols=89  Identities=12%  Similarity=0.162  Sum_probs=52.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCe---EEEEc--CCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFK---VTVWN--RTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~---V~~~d--r~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      |||+||| .|..|..+.+.|.+++|+   +....  ++..+.-.+......+.....+.++++|+||.|+|.... ++..
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s-~~~a   81 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTS-AKYA   81 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHH-HHHH
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHhH-HHHH
Confidence            4899999 699999999999998774   33332  222211111111111111111335789999999987443 3333


Q ss_pred             hcccccccccCCCcEEEecCCC
Q 027255           75 FDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st~   96 (226)
                         .   ..+..|..+||.|+.
T Consensus        82 ---~---~~~~~G~~vIDlSa~   97 (366)
T 3pwk_A           82 ---P---YAVKAGVVVVDNTSY   97 (366)
T ss_dssp             ---H---HHHHTTCEEEECSST
T ss_pred             ---H---HHHHCCCEEEEcCCc
Confidence               2   234578889999863

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.29  E-value=0.00045  Score=56.98  Aligned_cols=66  Identities=26%  Similarity=0.301  Sum_probs=49.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCC-----chhHHHH---HHCCCccc-------CCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRT-----LSKCDEL---VAHGATVG-------GSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~-----~~~~~~l---~~~g~~~~-------~s~~~~~~~advvi~~~   64 (226)
                      |+|.|+|. |.+|+.+++.|++.|++|++.+|+     +++.+.+   ...++.+.       .++.++++++|+||.+.
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a   84 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   84 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEECC
Confidence            57999995 999999999999999999999998     4444333   23454331       23556778899999987


Q ss_pred             CC
Q 027255           65 AD   66 (226)
Q Consensus        65 p~   66 (226)
                      ..
T Consensus        85 ~~   86 (313)
T 1qyd_A           85 AG   86 (313)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.29  E-value=0.00053  Score=55.62  Aligned_cols=111  Identities=16%  Similarity=0.200  Sum_probs=66.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecC---C
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLA---D   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p---~   66 (226)
                      .+|.|||+|.+|+.++++|+..|. +++++|++.-....+..+        |-..+....+.+.  +.++-+...+   +
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~  108 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLT  108 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCC
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            379999999999999999999997 688998765332222221        1111222222222  2344444433   2


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      .+...+.+          ..-.+||+++. .+.....+.+.+.+.++.++++.+.|
T Consensus       109 ~~~~~~~~----------~~~DvVi~~~d-~~~~r~~l~~~~~~~~~p~i~~~~~g  153 (251)
T 1zud_1          109 GEALKDAV----------ARADVVLDCTD-NMATRQEINAACVALNTPLITASAVG  153 (251)
T ss_dssp             HHHHHHHH----------HHCSEEEECCS-SHHHHHHHHHHHHHTTCCEEEEEEEB
T ss_pred             HHHHHHHH----------hcCCEEEECCC-CHHHHHHHHHHHHHhCCCEEEEeccc
Confidence            22232322          12367888765 55666778888888888888875544

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.29  E-value=8.2e-05  Score=63.21  Aligned_cols=88  Identities=16%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCC---eEEEE-cCC-chhHHHHHHCCCcccC-CHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGF---KVTVW-NRT-LSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~---~V~~~-dr~-~~~~~~l~~~g~~~~~-s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      |||+|+| .|.+|+.+.+.|.+.+|   ++... ++. ..+.-.+....+.... ++.+ ++++|+||.|+|.... .+.
T Consensus         7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~-~~~~DvV~~a~g~~~s-~~~   84 (340)
T 2hjs_A            7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD-FSSVGLAFFAAAAEVS-RAH   84 (340)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCC-GGGCSEEEECSCHHHH-HHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHH-hcCCCEEEEcCCcHHH-HHH
Confidence            5799999 79999999999987665   34444 432 2211001111111111 2222 5789999999987443 333


Q ss_pred             hhcccccccccCCCcEEEecCCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .   .   ..++.|..+||.|..
T Consensus        85 a---~---~~~~aG~kvId~Sa~  101 (340)
T 2hjs_A           85 A---E---RARAAGCSVIDLSGA  101 (340)
T ss_dssp             H---H---HHHHTTCEEEETTCT
T ss_pred             H---H---HHHHCCCEEEEeCCC
Confidence            3   2   233467778888764

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.28  E-value=0.0005  Score=57.04  Aligned_cols=66  Identities=23%  Similarity=0.279  Sum_probs=49.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCc------hhHHH---HHHCCCcc-------cCCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL------SKCDE---LVAHGATV-------GGSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~------~~~~~---l~~~g~~~-------~~s~~~~~~~advvi~~   63 (226)
                      |+|.|+|. |.+|+.+++.|++.||+|++.+|++      ++.+.   +...++.+       ..++.++++++|+||.+
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~~   84 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISA   84 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            57999995 9999999999999999999999986      33333   23345432       12355677889999998


Q ss_pred             cCC
Q 027255           64 LAD   66 (226)
Q Consensus        64 ~p~   66 (226)
                      ...
T Consensus        85 a~~   87 (321)
T 3c1o_A           85 LPF   87 (321)
T ss_dssp             CCG
T ss_pred             CCc
Confidence            753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.27  E-value=0.0024  Score=53.94  Aligned_cols=44  Identities=20%  Similarity=0.180  Sum_probs=39.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus       171 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~  214 (352)
T 1e3j_A          171 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD  214 (352)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC
Confidence            68899999999999988888999999999999998888877764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.27  E-value=0.00092  Score=55.44  Aligned_cols=132  Identities=15%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-------CCcccCCHHHHhh--hCCeEEEecCC----
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-------GATVGGSPAEVIK--KCTITIGMLAD----   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~--~advvi~~~p~----   66 (226)
                      .+|.|||+|..|+.++.+|++.|. +++++|.+.=....+...       |...+....+.+.  +.++-+...+.    
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~  116 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITT  116 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCCTTS
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecccCCc
Confidence            379999999999999999999996 699999776333333321       2222222223222  35666665542    


Q ss_pred             HHHHHHHhh--cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEec
Q 027255           67 PAAALSVVF--DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA  137 (226)
Q Consensus        67 ~~~~~~v~~--~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~g  137 (226)
                      .+.+.+.+.  ....+. ....-.+|||++-. ...-..+.+.+.+.++.++++.+++..   -.|.+.++.-
T Consensus       117 ~~~~~~~~~~~~~~~l~-~~~~~DlVid~~Dn-~~~R~~in~~c~~~~~Pli~~gv~~~~---~~Gqv~~~~p  184 (292)
T 3h8v_A          117 VENFQHFMDRISNGGLE-EGKPVDLVLSCVDN-FEARMTINTACNELGQTWMESGVSENA---VSGHIQLIIP  184 (292)
T ss_dssp             HHHHHHHHHHHHHBSSS-TTBCCSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEECTTS---SEEEEEEECT
T ss_pred             HHHHHHHhhhhcccccc-cCCCCCEEEECCcc-hhhhhHHHHHHHHhCCCEEEeeeecce---eEEEEEEECC
Confidence            122333220  000010 01345788888754 445567888888889999999887621   3566666653

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.26  E-value=0.0011  Score=56.49  Aligned_cols=85  Identities=22%  Similarity=0.357  Sum_probs=56.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCC-CeEEEEcCC--ch-hHHH----HHHCCCccc-CCHHHHhhhCCeEEEecCCHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRT--LS-KCDE----LVAHGATVG-GSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~dr~--~~-~~~~----l~~~g~~~~-~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      ||+|||. |..|..|.+.|.++- .++....-.  .. ++..    +. ....+. .+.+++.+++|+||+|+|... .+
T Consensus        15 ~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~~~Dvvf~alp~~~-s~   92 (351)
T 1vkn_A           15 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSKNCDVLFTALPAGA-SY   92 (351)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHHHCSEEEECCSTTH-HH
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhcCCCEEEECCCcHH-HH
Confidence            7999975 999999999999874 355554322  21 2222    21 222222 245565588999999999854 44


Q ss_pred             HHhhcccccccccCCCcEEEecCCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +..   .    .+ .|..|||.|+.
T Consensus        93 ~~~---~----~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           93 DLV---R----EL-KGVKIIDLGAD  109 (351)
T ss_dssp             HHH---T----TC-CSCEEEESSST
T ss_pred             HHH---H----Hh-CCCEEEECChh
Confidence            444   2    33 78999999974

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.26  E-value=0.00045  Score=56.79  Aligned_cols=65  Identities=29%  Similarity=0.289  Sum_probs=50.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC-CeEEEEcCCchhH--HHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKC--DELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~dr~~~~~--~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.|. |.+|+.+++.|++.| ++|++.+|++++.  +.+...++..       ..++.++++++|+||.+..
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            46999997 999999999999988 9999999998764  3454555433       1234566788999998874

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.25  E-value=0.00019  Score=63.20  Aligned_cols=98  Identities=22%  Similarity=0.313  Sum_probs=63.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-C---eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-F---KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~---~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      +||.|||+|.||+.++..++++. +   +|++.|++....+            ..+.. ...++...+ +...+++++  
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~------------~~~~~-g~~~~~~~V-dadnv~~~l--   77 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVD------------VAQQY-GVSFKLQQI-TPQNYLEVI--   77 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCC------------HHHHH-TCEEEECCC-CTTTHHHHT--
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhh------------HHhhc-CCceeEEec-cchhHHHHH--
Confidence            57999999999999999999864 4   6888887654321            11211 122333334 233444444  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                       ..++   +.+.+||+.+.  +.....+.+.+.+.|++|+|..+
T Consensus        78 -~aLl---~~~DvVIN~s~--~~~~l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           78 -GSTL---EENDFLIDVSI--GISSLALIILCNQKGALYINAAT  115 (480)
T ss_dssp             -GGGC---CTTCEEEECCS--SSCHHHHHHHHHHHTCEEEESSC
T ss_pred             -HHHh---cCCCEEEECCc--cccCHHHHHHHHHcCCCEEECCC
Confidence             3333   34578887653  34556778888888999999875

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.25  E-value=4.7e-05  Score=60.29  Aligned_cols=66  Identities=15%  Similarity=0.202  Sum_probs=47.5

Q ss_pred             eEEEEecChhHHHHHHHH--HhCCCeEE-EEcCCch-hHHH-HHHCCCcc--cCCHHHHhh--hCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNL--LRNGFKVT-VWNRTLS-KCDE-LVAHGATV--GGSPAEVIK--KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l--~~~G~~V~-~~dr~~~-~~~~-l~~~g~~~--~~s~~~~~~--~advvi~~~p~~~   68 (226)
                      +|.|+|+|++|..+++.+  ...|+++. ++|.+++ +... .. .|+.+  .+++.+.++  +.|++++|+|+..
T Consensus        86 ~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~~  160 (212)
T 3keo_A           86 NVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPSTE  160 (212)
T ss_dssp             EEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCGGG
T ss_pred             EEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCchh
Confidence            689999999999999984  34577755 6799998 6543 11 35544  356667766  4899999999854

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.23  E-value=0.0007  Score=57.26  Aligned_cols=64  Identities=14%  Similarity=0.089  Sum_probs=48.4

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCC--e-----EEEEcCCch--hH----HHHHHCC------CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGF--K-----VTVWNRTLS--KC----DELVAHG------ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~--~-----V~~~dr~~~--~~----~~l~~~g------~~~~~s~~~~~~~advv   60 (226)
                      |||.|+| +|.+|..++..|+..|.  +     +.++|+++.  ++    ..+....      +....+..+.+++||+|
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV   83 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence            5899999 79999999999998875  5     999999752  22    2343321      23456678889999999


Q ss_pred             EEec
Q 027255           61 IGML   64 (226)
Q Consensus        61 i~~~   64 (226)
                      |++.
T Consensus        84 vitA   87 (333)
T 5mdh_A           84 ILVG   87 (333)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.22  E-value=0.0031  Score=53.65  Aligned_cols=72  Identities=18%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccC-------CHHHHhh-----hCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG-------SPAEVIK-----KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~-------s~~~~~~-----~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+..+-       +..+.+.     ..|+||-++..+.
T Consensus       193 ~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~  272 (373)
T 2fzw_A          193 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVK  272 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcHH
Confidence            68899999999998888888898 799999999999888777764221       2222222     3566666665544


Q ss_pred             HHHHH
Q 027255           69 AALSV   73 (226)
Q Consensus        69 ~~~~v   73 (226)
                      .++..
T Consensus       273 ~~~~~  277 (373)
T 2fzw_A          273 VMRAA  277 (373)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=97.22  E-value=0.0012  Score=59.11  Aligned_cols=114  Identities=12%  Similarity=0.037  Sum_probs=73.2

Q ss_pred             CeEEEEecChhHHH-HHHHHHhCCCeEEEEcCCc--hhHHHHHHCCCccc--CCHHHHhhhCCeEEEe--cC-CHHHHHH
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTL--SKCDELVAHGATVG--GSPAEVIKKCTITIGM--LA-DPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~G~~V~~~dr~~--~~~~~l~~~g~~~~--~s~~~~~~~advvi~~--~p-~~~~~~~   72 (226)
                      ++|-|||.|..|.+ +|+.|.+.|++|+++|.+.  ...+.|.+.|+.+.  .+++++..++|+||..  +| +...+..
T Consensus        20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~~   99 (524)
T 3hn7_A           20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIEY   99 (524)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHHH
T ss_pred             CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHHH
Confidence            57999999999986 7888999999999999864  34567888888764  3444554578988875  33 2233333


Q ss_pred             Hhh------cccccccc-c-CCCcEEEecCC-CCHHHHHHHHHHHHhcCCc
Q 027255           73 VVF------DKGGVLEQ-I-CPGKGYIDMST-VDHETSIKISRAITSKGGH  114 (226)
Q Consensus        73 v~~------~~~~l~~~-l-~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~  114 (226)
                      ...      ++.+++.. + +...+|.-+.| ....++.-++..+++.|..
T Consensus       100 a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~  150 (524)
T 3hn7_A          100 MLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGID  150 (524)
T ss_dssp             HHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCC
Confidence            221      11122221 2 23345555555 5566666677788877753

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=97.21  E-value=0.0003  Score=62.12  Aligned_cols=105  Identities=12%  Similarity=0.068  Sum_probs=74.4

Q ss_pred             eEEEEecC----hhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            2 EVGFLGLG----IMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvIG~G----~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      +|+|||++    .+|..+.++|.+.| +.|+.+|+..+.+     .|...+.|+.++.+..|++++++|. +.+.+++  
T Consensus        10 siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~~v--   81 (457)
T 2csu_A           10 GIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTL--   81 (457)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCH-HHHHHHH--
T ss_pred             eEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcCCCCCEEEEecCH-HHHHHHH--
Confidence            69999998    88999999999985 6777777664332     4888889999988889999999987 5566665  


Q ss_pred             ccccccccCCCcEEEecCCCCH-------HHHHHHHHHHHhcCCcEEe
Q 027255           77 KGGVLEQICPGKGYIDMSTVDH-------ETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~-------~~~~~l~~~~~~~g~~~ld  117 (226)
                       ++..+. ... .+|..+..-+       ...+++.+.++++|+.++-
T Consensus        82 -~e~~~~-Gi~-~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG  126 (457)
T 2csu_A           82 -IQCGEK-GVK-GVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (457)
T ss_dssp             -HHHHHH-TCC-EEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             -HHHHHc-CCC-EEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence             333332 122 3333343221       1367788888888988773

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=97.21  E-value=0.00069  Score=57.36  Aligned_cols=87  Identities=16%  Similarity=0.228  Sum_probs=54.0

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeEEE-EcC--CchhHHHHHH----CCC---------------------ccc--CCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKVTV-WNR--TLSKCDELVA----HGA---------------------TVG--GSP   50 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V~~-~dr--~~~~~~~l~~----~g~---------------------~~~--~s~   50 (226)
                      ||||+|+|.+|+.+++.|.++ +++|.. .|+  +++....+.+    .|.                     .+.  .++
T Consensus         5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~dp   84 (337)
T 3e5r_O            5 KIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNP   84 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSCG
T ss_pred             EEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCCh
Confidence            899999999999999999876 566554 453  4444444431    111                     112  155


Q ss_pred             HHH-h--hhCCeEEEecCCHHHHHHHhhcccccccccCCCc--EEEecCC
Q 027255           51 AEV-I--KKCTITIGMLADPAAALSVVFDKGGVLEQICPGK--GYIDMST   95 (226)
Q Consensus        51 ~~~-~--~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~--ivvd~st   95 (226)
                      +++ +  .++|+||.|+|.....+..    .   .+++.|.  +||+.+.
T Consensus        85 ~~l~w~~~~vDvV~eaTg~~~~~e~a----~---~~l~aGak~VVIs~pa  127 (337)
T 3e5r_O           85 DEIPWAEAGAEYVVESTGVFTDKEKA----A---AHLKGGAKKVVISAPS  127 (337)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHH----T---HHHHTTCSEEEESSCC
T ss_pred             HHccccccCCCEEEECCCchhhHHHH----H---HHHHcCCCEEEEecCC
Confidence            554 1  4799999999875443322    1   3334455  7777764

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.19  E-value=0.00017  Score=61.63  Aligned_cols=87  Identities=20%  Similarity=0.207  Sum_probs=53.4

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCC-CeEEEE-cCCc--hhHHHHH-----------HCCCcccC-CHHHHhhhCCeEEEec
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVW-NRTL--SKCDELV-----------AHGATVGG-SPAEVIKKCTITIGML   64 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G-~~V~~~-dr~~--~~~~~l~-----------~~g~~~~~-s~~~~~~~advvi~~~   64 (226)
                      ||+||| .|..|..+.+.|.++- .++... .++.  .+.....           .....+.. +.+ .++++|+||.|+
T Consensus         9 kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~a~   87 (359)
T 4dpl_A            9 KAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFSPL   87 (359)
T ss_dssp             EEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEECC
T ss_pred             eEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEECC
Confidence            699999 6999999999887653 355433 3332  1232210           01222221 232 347899999999


Q ss_pred             CCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        65 p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      |..... +..   .   ..+..|..+||.|+-
T Consensus        88 p~~~s~-~~a---~---~~~~~G~~vIDlSa~  112 (359)
T 4dpl_A           88 PQGAAG-PVE---E---QFAKEGFPVISNSPD  112 (359)
T ss_dssp             CTTTHH-HHH---H---HHHHTTCEEEECSST
T ss_pred             ChHHHH-HHH---H---HHHHCCCEEEEcCCC
Confidence            985443 333   2   234578899999864

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.19  E-value=0.00017  Score=61.63  Aligned_cols=87  Identities=20%  Similarity=0.207  Sum_probs=53.4

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCC-CeEEEE-cCCc--hhHHHHH-----------HCCCcccC-CHHHHhhhCCeEEEec
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVW-NRTL--SKCDELV-----------AHGATVGG-SPAEVIKKCTITIGML   64 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G-~~V~~~-dr~~--~~~~~l~-----------~~g~~~~~-s~~~~~~~advvi~~~   64 (226)
                      ||+||| .|..|..+.+.|.++- .++... .++.  .+.....           .....+.. +.+ .++++|+||.|+
T Consensus         9 kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~a~   87 (359)
T 4dpk_A            9 KAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFSPL   87 (359)
T ss_dssp             EEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEECC
T ss_pred             eEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEECC
Confidence            699999 6999999999887653 355433 3332  1232210           01222221 232 347899999999


Q ss_pred             CCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        65 p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      |..... +..   .   ..+..|..+||.|+-
T Consensus        88 p~~~s~-~~a---~---~~~~~G~~vIDlSa~  112 (359)
T 4dpk_A           88 PQGAAG-PVE---E---QFAKEGFPVISNSPD  112 (359)
T ss_dssp             CTTTHH-HHH---H---HHHHTTCEEEECSST
T ss_pred             ChHHHH-HHH---H---HHHHCCCEEEEcCCC
Confidence            985443 333   2   234578899999864

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=97.19  E-value=0.00019  Score=59.12  Aligned_cols=58  Identities=24%  Similarity=0.289  Sum_probs=42.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~   64 (226)
                      |||.|.|. |.+|+.+++.|.++||+|++..|++.+.+      +.......+.++++|.|+-+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence            99999997 99999999999999999999999876421      111111223356788887654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.0021  Score=54.27  Aligned_cols=73  Identities=16%  Similarity=0.068  Sum_probs=51.9

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc------CCHHHHhh-----hCCeEEEecCCHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------GSPAEVIK-----KCTITIGMLADPAA   69 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~------~s~~~~~~-----~advvi~~~p~~~~   69 (226)
                      +|.|+|+ |.+|..+++.+...|++|++.++++++.+.+.+.|+...      .+..+.+.     ..|+||.++.....
T Consensus       172 ~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~  251 (347)
T 2hcy_A          172 WVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAA  251 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCHHH
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcHHH
Confidence            6889999 999999999999999999999999998877777665321      22333332     35777777655444


Q ss_pred             HHHHh
Q 027255           70 ALSVV   74 (226)
Q Consensus        70 ~~~v~   74 (226)
                      ++..+
T Consensus       252 ~~~~~  256 (347)
T 2hcy_A          252 IEAST  256 (347)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            44433

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.17  E-value=0.00018  Score=58.80  Aligned_cols=61  Identities=20%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhh-CCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKK-CTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~-advvi~~~p   65 (226)
                      |+|.|.|+|.+|+.+++.|++.|++|++.+|++++..    .++..       ..+..+++++ +|+||-+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC----TTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc----cCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            5899999999999999999999999999999877531    22221       2234455666 999998763

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=97.17  E-value=0.00053  Score=57.66  Aligned_cols=64  Identities=13%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCc--hhHH----HHHHCC------CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCD----ELVAHG------ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~----~l~~~g------~~~~~s~~~~~~~advv   60 (226)
                      |||.|+|. |.+|++++..|+..|+       +|+++|+++  ++.+    .+....      +....+..++++++|+|
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~V   84 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCEE
Confidence            58999997 9999999999999986       899999975  2222    232211      22235677888999999


Q ss_pred             EEec
Q 027255           61 IGML   64 (226)
Q Consensus        61 i~~~   64 (226)
                      |.+.
T Consensus        85 ih~A   88 (327)
T 1y7t_A           85 LLVG   88 (327)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.16  E-value=0.0028  Score=53.72  Aligned_cols=44  Identities=20%  Similarity=0.195  Sum_probs=38.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus       174 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~  218 (356)
T 1pl8_A          174 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD  218 (356)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence            68899999999998888888898 899999999998888887864

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=97.15  E-value=0.0022  Score=57.60  Aligned_cols=117  Identities=12%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhhh--CCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIKK--CTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~--advvi~~~p~~~~   69 (226)
                      .+|.|||+|..|..++++|+..|. +++++|.+.=....+..+        |-..+....+.+..  .++-+...+.  .
T Consensus        33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~--~  110 (531)
T 1tt5_A           33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--S  110 (531)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESS--C
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCC--C
Confidence            379999999999999999999997 699999876555556544        21122222222222  3444444433  2


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      +...+   +.....+..-.+||+++ ..+..-..+.+.+.+.++.++++.+.|.
T Consensus       111 ~~~~~---~~~~~~~~~~DvVi~~~-d~~~~r~~ln~~c~~~~iplI~~~~~G~  160 (531)
T 1tt5_A          111 PENLL---DNDPSFFCRFTVVVATQ-LPESTSLRLADVLWNSQIPLLICRTYGL  160 (531)
T ss_dssp             HHHHH---HSCGGGGGGCSEEEEES-CCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             cchhh---hhhHHHhcCCCEEEEeC-CCHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            22322   11112233446888874 4677778888899999999999876653

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=97.15  E-value=0.0016  Score=51.84  Aligned_cols=96  Identities=17%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ||.+++|+ |.||+.+++.....|+++. .+|+..+             .++    +++|++|=.+ .++.+.+.+   +
T Consensus        13 ~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~-------------~~l----~~~DVvIDFT-~P~a~~~~~---~   71 (228)
T 1vm6_A           13 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-------------EEL----DSPDVVIDFS-SPEALPKTV---D   71 (228)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-------------EEC----SCCSEEEECS-CGGGHHHHH---H
T ss_pred             ceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc-------------ccc----cCCCEEEECC-CHHHHHHHH---H
Confidence            78999998 9999999887767889855 5677542             111    3689888444 334444443   1


Q ss_pred             ccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           79 GVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                         .+++.|..+|..||. +++....+.+. .++ +.++=+|-+.
T Consensus        72 ---~~~~~g~~~ViGTTG~~~~~~~~l~~~-a~~-~~vv~apNfS  111 (228)
T 1vm6_A           72 ---LCKKYRAGLVLGTTALKEEHLQMLREL-SKE-VPVVQAYNFS  111 (228)
T ss_dssp             ---HHHHHTCEEEECCCSCCHHHHHHHHHH-TTT-SEEEECSCCC
T ss_pred             ---HHHHcCCCEEEeCCCCCHHHHHHHHHH-Hhh-CCEEEecccc
Confidence               234456667776665 45444444443 333 5666666543

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=97.15  E-value=0.0019  Score=55.38  Aligned_cols=88  Identities=16%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             CeEEEEe-cChhHHHHHH-HHHhCCC---eEEEEc-CCchh-HHHHHHCCCccc--CCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLG-LGIMGKAISM-NLLRNGF---KVTVWN-RTLSK-CDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~-~l~~~G~---~V~~~d-r~~~~-~~~l~~~g~~~~--~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      |||+|+| .|..|+.+.+ .|.++.+   +++... ++..+ ...+....+.+.  .++++ ++++|+||.|+|... .+
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~-s~   79 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDY-TN   79 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHH-HH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchh-HH
Confidence            4899999 8999999999 5555554   344443 22221 111211223222  23444 578999999998743 33


Q ss_pred             HHhhcccccccccCCCc--EEEecCCC
Q 027255           72 SVVFDKGGVLEQICPGK--GYIDMSTV   96 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~--ivvd~st~   96 (226)
                      +..   ..+   ++.|.  +|||.|+.
T Consensus        80 ~~a---~~~---~~~G~k~vVID~ss~  100 (367)
T 1t4b_A           80 EIY---PKL---RESGWQGYWIDAASS  100 (367)
T ss_dssp             HHH---HHH---HHTTCCCEEEECSST
T ss_pred             HHH---HHH---HHCCCCEEEEcCChh
Confidence            443   222   33554  89998864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.15  E-value=0.0019  Score=54.25  Aligned_cols=44  Identities=20%  Similarity=0.153  Sum_probs=39.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus       169 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~  212 (340)
T 3s2e_A          169 WVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE  212 (340)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC
Confidence            68899999999999888888999999999999999888887754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.14  E-value=0.00058  Score=56.46  Aligned_cols=63  Identities=11%  Similarity=0.227  Sum_probs=46.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.| .|.+|+.+++.|++.|++|++.+|++...+ +...     .+. ..+..++++++|+||-+..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence            5899998 599999999999999999999999865544 3311     223 3445667788999998764

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=97.14  E-value=0.0016  Score=57.90  Aligned_cols=113  Identities=16%  Similarity=0.203  Sum_probs=72.0

Q ss_pred             CeEEEEecChhHHH-HHHHHHhCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhhCCeEEEe--cCC-HHHHHHHh
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGM--LAD-PAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~~~~~~advvi~~--~p~-~~~~~~v~   74 (226)
                      ++|.|||+|..|.+ +|+.|.+.|++|+++|..+. ..+.+.+.|+.+.. ...+.+.++|+||..  +|. ...+....
T Consensus        23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a~  102 (494)
T 4hv4_A           23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAAR  102 (494)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHHH
T ss_pred             CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHHH
Confidence            37999999999995 99999999999999997654 45667788886642 122345679998876  332 22333222


Q ss_pred             h------cccccccccCCC-cEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255           75 F------DKGGVLEQICPG-KGYIDMST-VDHETSIKISRAITSKGG  113 (226)
Q Consensus        75 ~------~~~~l~~~l~~g-~ivvd~st-~~~~~~~~l~~~~~~~g~  113 (226)
                      .      ++.+++..+.+. .+|--+.| ....++.-++..+...|.
T Consensus       103 ~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  149 (494)
T 4hv4_A          103 EARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL  149 (494)
T ss_dssp             HTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred             HCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence            1      011222222233 34544444 566677777888888775

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.13  E-value=0.0013  Score=56.38  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=63.2

Q ss_pred             CeEEEEec-ChhHHHHHH-HHHhCCC---eEEEE-cCCchh-HHHHHHCCCccc--CCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISM-NLLRNGF---KVTVW-NRTLSK-CDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~-~l~~~G~---~V~~~-dr~~~~-~~~l~~~g~~~~--~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      |||||||+ |..|..|.+ .|.++.+   ++... .++..+ ...+......+.  .++. .++++|+||.|+|... .+
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~-~~~~~Dvvf~a~~~~~-s~   78 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIE-SLKQLDAVITCQGGSY-TE   78 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHH-HHTTCSEEEECSCHHH-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcCHHHhCCCceEEEecCChh-HhccCCEEEECCChHH-HH
Confidence            79999996 999999999 7777653   44444 333211 111221112222  2333 3578999999998844 33


Q ss_pred             HHhhcccccccccCCC--cEEEecCCC----------CHHHHHHHHHHHHhcCCcEEecC
Q 027255           72 SVVFDKGGVLEQICPG--KGYIDMSTV----------DHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g--~ivvd~st~----------~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +..   ..   .+..|  ++|||.|+.          -|+...+..+...++++.++..|
T Consensus        79 ~~~---~~---~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ianp  132 (370)
T 3pzr_A           79 KVY---PA---LRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGG  132 (370)
T ss_dssp             HHH---HH---HHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             HHH---HH---HHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhhcCCcEEEcC
Confidence            433   22   23456  489999862          34444433332223566666665

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.10  E-value=0.0019  Score=54.87  Aligned_cols=63  Identities=19%  Similarity=0.213  Sum_probs=47.9

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCchh--HH----HHHHC------CCcccCCHHHHhhhCCeEE
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CD----ELVAH------GATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~~~--~~----~l~~~------g~~~~~s~~~~~~~advvi   61 (226)
                      ||+|+|+ |.+|.+++-.|+....       ++.++|.++..  ++    ++...      .+....++.++++++|+||
T Consensus        26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~advVv  105 (345)
T 4h7p_A           26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAI  105 (345)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred             EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCEEE
Confidence            8999996 9999999999987643       79999997642  22    23332      2345678889999999999


Q ss_pred             Eec
Q 027255           62 GML   64 (226)
Q Consensus        62 ~~~   64 (226)
                      ++-
T Consensus       106 i~a  108 (345)
T 4h7p_A          106 MCG  108 (345)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            975

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.09  E-value=0.00073  Score=56.56  Aligned_cols=64  Identities=20%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcC--CchhHHH----HHHC------CCcccC---CHHHHhhhCCeEEE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNR--TLSKCDE----LVAH------GATVGG---SPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr--~~~~~~~----l~~~------g~~~~~---s~~~~~~~advvi~   62 (226)
                      |||.|+|+ |.+|++++..|+..|+  ++.++|+  ++++.+.    +...      ...+..   +..++++++|+||.
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            89999999 9999999999998885  6889999  7654432    2211      122222   24788999999999


Q ss_pred             ec
Q 027255           63 ML   64 (226)
Q Consensus        63 ~~   64 (226)
                      +.
T Consensus        81 ~A   82 (313)
T 1hye_A           81 TS   82 (313)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.08  E-value=0.00055  Score=58.40  Aligned_cols=44  Identities=34%  Similarity=0.417  Sum_probs=38.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-HCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.|+.
T Consensus       190 ~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~  234 (366)
T 1yqd_A          190 HIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD  234 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence            688999999999999999899999999999999888776 55653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.08  E-value=0.001  Score=55.36  Aligned_cols=65  Identities=26%  Similarity=0.255  Sum_probs=48.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-------CCCcc--------cCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------HGATV--------GGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-------~g~~~--------~~s~~~~~~~advvi~~~   64 (226)
                      |+|.|.|. |.+|+.+++.|++.|++|++.+|++++.+.+..       .++..        ..+..++++++|+||-+.
T Consensus        12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A   91 (342)
T 1y1p_A           12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEEEeC
Confidence            57889987 999999999999999999999999887655432       12221        123445566789999876


Q ss_pred             C
Q 027255           65 A   65 (226)
Q Consensus        65 p   65 (226)
                      .
T Consensus        92 ~   92 (342)
T 1y1p_A           92 S   92 (342)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=97.07  E-value=0.003  Score=53.73  Aligned_cols=129  Identities=15%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             eEEEEe-cChhHHHHHHHHHhC-CCeEEE--EcCCchhHHHHHH-CCCccc-----CCH--------------HHHh--h
Q 027255            2 EVGFLG-LGIMGKAISMNLLRN-GFKVTV--WNRTLSKCDELVA-HGATVG-----GSP--------------AEVI--K   55 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~-G~~V~~--~dr~~~~~~~l~~-~g~~~~-----~s~--------------~~~~--~   55 (226)
                      +|+|+| .|.+|+.....+.++ .++|..  .++|.+++.+... .+...+     .+.              .+++  .
T Consensus         5 ~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~~   84 (376)
T 3a06_A            5 TLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEAL   84 (376)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcCC
Confidence            799999 699999988888876 567664  4889888776544 343332     222              4555  3


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCCCChHh-------h
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGSKQP-------A  127 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~-------a  127 (226)
                      ++|+|+.+++....++..+       ..++.|+.|.-..+- -......+.+.++++|+.++..-  . +..       .
T Consensus        85 ~~D~Vv~AivG~aGL~ptl-------aAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~llPVD--S-EHsAifQ~L~~  154 (376)
T 3a06_A           85 KPDITMVAVSGFSGLRAVL-------ASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELIPVD--S-EHSAIFQVMEP  154 (376)
T ss_dssp             CCSEEEECCCSTTHHHHHH-------HHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEEEECS--H-HHHHHHHHCCS
T ss_pred             CCCEEEEEeeCHHHHHHHH-------HHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEEEEEc--c-ccCHHHHHHHh
Confidence            5899999999988888877       455678877766652 23344555666677788765331  1 111       1


Q ss_pred             ccCcEEEEeccCC
Q 027255          128 ETGQLVILSAGEK  140 (226)
Q Consensus       128 ~~g~~~~~~gg~~  140 (226)
                      .-+++.+-+||-+
T Consensus       155 ~v~kiiLTASGGp  167 (376)
T 3a06_A          155 EVEKVVLTASGGA  167 (376)
T ss_dssp             SCSEEEEEECCCT
T ss_pred             hhceEEEeccCCc
Confidence            2456767777655

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.07  E-value=0.00055  Score=55.64  Aligned_cols=64  Identities=17%  Similarity=0.287  Sum_probs=50.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      +|.|.|. |.+|+.+++.|++.  |++|++.+|++++.+.+...++..       ..+..++++++|+||.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            5788987 99999999999998  999999999988877766555432       1234566778999998764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.06  E-value=0.0014  Score=55.35  Aligned_cols=45  Identities=18%  Similarity=0.058  Sum_probs=39.0

Q ss_pred             eEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHCCCcc
Q 027255            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATV   46 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~g~~~   46 (226)
                      +|.|+|+|.+|...++.+...  |.+|++.++++++.+.+.+.|+..
T Consensus       173 ~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~  219 (344)
T 2h6e_A          173 VVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADY  219 (344)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCE
Confidence            689999999999888888778  999999999999988887777643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.05  E-value=0.0026  Score=54.31  Aligned_cols=73  Identities=22%  Similarity=0.189  Sum_probs=51.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCccc-----CCHHHHhh--------hCCeEEEecCCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK--------KCTITIGMLADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-----~s~~~~~~--------~advvi~~~p~~   67 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+..+     .+..+.+.        ..|+||-++..+
T Consensus       185 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~~  264 (370)
T 4ej6_A          185 TVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVA  264 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCCH
Confidence            68899999999998888888998 89999999999888777776432     12223322        256666666554


Q ss_pred             HHHHHHh
Q 027255           68 AAALSVV   74 (226)
Q Consensus        68 ~~~~~v~   74 (226)
                      ..+...+
T Consensus       265 ~~~~~~~  271 (370)
T 4ej6_A          265 ETVKQST  271 (370)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.04  E-value=0.00099  Score=52.87  Aligned_cols=64  Identities=16%  Similarity=0.123  Sum_probs=48.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.| .|.+|+.+++.|++.  |++|++.+|++++.+.+ ..++..       ..+..+++++.|+||.+..
T Consensus         5 ~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            5788998 599999999999999  89999999998876654 222221       1234566778999998764

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.03  E-value=0.0023  Score=55.00  Aligned_cols=111  Identities=16%  Similarity=0.265  Sum_probs=62.9

Q ss_pred             CeEEEEec-ChhHHHHHH-HHHhCCC---eEEEE-cCCchh-HHHHHHCCCccc--CCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISM-NLLRNGF---KVTVW-NRTLSK-CDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~-~l~~~G~---~V~~~-dr~~~~-~~~l~~~g~~~~--~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      |||||||+ |..|..|.+ .|.++-+   ++..+ .++..+ ...+......+.  .++ +.++++|+||.|+|... .+
T Consensus         5 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~-~~~~~vDvvf~a~~~~~-s~   82 (377)
T 3uw3_A            5 MNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATSI-DDLKKCDVIITCQGGDY-TN   82 (377)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCSCCBCEETTCH-HHHHTCSEEEECSCHHH-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCCceEEEeCCCh-hHhcCCCEEEECCChHH-HH
Confidence            68999997 999999999 7776653   45444 332221 112321112222  233 33578999999998744 34


Q ss_pred             HHhhcccccccccCCC--cEEEecCCC----------CHHHHHHHHHHHHhcCCcEEecC
Q 027255           72 SVVFDKGGVLEQICPG--KGYIDMSTV----------DHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g--~ivvd~st~----------~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +..   .   ..+..|  ++|||.|+.          -|+...+..+..+++++.++..|
T Consensus        83 ~~~---~---~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ianp  136 (377)
T 3uw3_A           83 DVF---P---KLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVNGTKNFIGG  136 (377)
T ss_dssp             HHH---H---HHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             HHH---H---HHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhhhhhcCCcEEEcC
Confidence            443   2   223456  489999862          34444333332223566556665

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.03  E-value=0.002  Score=49.72  Aligned_cols=42  Identities=19%  Similarity=0.049  Sum_probs=36.3

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g   43 (226)
                      +|.|+| .|.+|..+++.+...|++|++.++++++.+.+.+.|
T Consensus        41 ~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g   83 (198)
T 1pqw_A           41 RVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG   83 (198)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred             EEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence            688899 699999999999999999999999998877665544

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=97.02  E-value=0.0011  Score=58.06  Aligned_cols=114  Identities=11%  Similarity=0.092  Sum_probs=71.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhH--HHHHHCCCccc--CCHHHHhhhCCeEEEec--C-CHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC--DELVAHGATVG--GSPAEVIKKCTITIGML--A-DPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~--~~l~~~g~~~~--~s~~~~~~~advvi~~~--p-~~~~~~~v   73 (226)
                      ++|.|||+|..|.+.|+.|.+.||+|+++|......  ..+. .|+++.  ....+.++++|.|++..  | +...+...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~~a   84 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAA   84 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHHHH
Confidence            579999999999999999999999999999754432  3355 677663  22356666899888863  2 22233321


Q ss_pred             h-hc-----ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255           74 V-FD-----KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        74 ~-~~-----~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~  115 (226)
                      . .+     .-+++....+..+|--+.| ....++.-++..+.+.|...
T Consensus        85 ~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~  133 (439)
T 2x5o_A           85 ADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV  133 (439)
T ss_dssp             HHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred             HHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence            1 01     0011111122345444444 56677777888888877653

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.01  E-value=0.00067  Score=57.78  Aligned_cols=34  Identities=38%  Similarity=0.744  Sum_probs=32.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |||.|||.|..|..+|..|.++|++|++++|++.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            8999999999999999999999999999988654

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=97.00  E-value=0.0031  Score=53.66  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEEEE-c-C-CchhHHHHHHC----C-------------------Cccc--CCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVW-N-R-TLSKCDELVAH----G-------------------ATVG--GSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~~~-d-r-~~~~~~~l~~~----g-------------------~~~~--~s~~   51 (226)
                      +||||+|.|.+|+.+.+.|.++ .++|... | + +.+....+.+.    |                   +.+.  .+++
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   97 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA   97 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence            4899999999999999999876 5776655 4 2 22222232111    1                   1122  2455


Q ss_pred             HH-h--hhCCeEEEecCCHHHHHHHhhcccccccccCCCc--EEEecCC
Q 027255           52 EV-I--KKCTITIGMLADPAAALSVVFDKGGVLEQICPGK--GYIDMST   95 (226)
Q Consensus        52 ~~-~--~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~--ivvd~st   95 (226)
                      ++ +  .++|+||.|+|.....+ ..   .   .+++.|.  +|||.+.
T Consensus        98 ~i~w~~~~vDvV~eatg~~~s~e-~a---~---~~l~~GakkvVId~pa  139 (354)
T 3cps_A           98 EIPWGASGAQIVCESTGVFTTEE-KA---S---LHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSHH-HH---G---GGGTTTCSEEEESSCC
T ss_pred             HCCcccCCCCEEEECCCchhhHH-HH---H---HHHHcCCcEEEEeCCC
Confidence            53 2  57999999998754333 22   2   3445566  8888875

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.00  E-value=0.00035  Score=55.49  Aligned_cols=66  Identities=23%  Similarity=0.248  Sum_probs=47.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCCc-------ccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT-------VGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~~-------~~~s~~~~~~~advvi~~~p~   66 (226)
                      |+|.|.| .|.+|+.+++.|++.|+  +|++.+|++++.+.....++.       -..+..+++++.|+||.+...
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            4788998 59999999999999999  999999988754332222221       122344556678888887643

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.99  E-value=0.0015  Score=57.37  Aligned_cols=104  Identities=13%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             CeEEEEecC----------hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH--CCCcccCCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLG----------IMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGATVGGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G----------~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~--~g~~~~~s~~~~~~~advvi~~~p~~~   68 (226)
                      .||+|+|+-          .-...+++.|.+.|.+|.+||+.-.  +....  .++..+.++.++++++|+|++++..++
T Consensus       323 ~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~  400 (446)
T 4a7p_A          323 KTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGV--EQASKMLTDVEFVENPYAAADGADALVIVTEWDA  400 (446)
T ss_dssp             CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCH--HHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTT
T ss_pred             CEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCC--HhHHHhcCCceEecChhHHhcCCCEEEEeeCCHH
Confidence            379999987          6678999999999999999998653  23222  267778899999999999999998754


Q ss_pred             HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      . ++.=  .+.+...+ +..+|+|.-.....      +.+++.|+.|.
T Consensus       401 f-~~~d--~~~~~~~~-~~~~i~D~r~~~~~------~~~~~~g~~y~  438 (446)
T 4a7p_A          401 F-RALD--LTRIKNSL-KSPVLVDLRNIYPP------AELERAGLQYT  438 (446)
T ss_dssp             T-TSCC--HHHHHTTB-SSCBEECSSCCSCH------HHHHHTTCBCC
T ss_pred             h-hcCC--HHHHHHhc-CCCEEEECCCCCCH------HHHHhcCCEEE
Confidence            2 2210  02233334 45689998876432      23345677663

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.98  E-value=0.0014  Score=55.38  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=29.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL   33 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   33 (226)
                      .+|.|||+|..|.++|++|+..|. +++++|++.
T Consensus        35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            379999999999999999999996 688998865

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.98  E-value=0.0017  Score=55.30  Aligned_cols=44  Identities=25%  Similarity=0.108  Sum_probs=38.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|.|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus       192 ~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~  235 (363)
T 3uog_A          192 RVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD  235 (363)
T ss_dssp             EEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC
Confidence            68899999999999988888999999999999998887776653

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.97  E-value=0.00099  Score=56.92  Aligned_cols=87  Identities=17%  Similarity=0.156  Sum_probs=59.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC--CHHHHh----hhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--SPAEVI----KKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--s~~~~~----~~advvi~~~p~~~~~~~v~~   75 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+..+-  +..+.+    ...|+||-++..+..++..+ 
T Consensus       197 ~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~-  275 (369)
T 1uuf_A          197 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFT-  275 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHH-
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHHHH-
Confidence            68899999999999888888999999999999999888877764321  111211    34688888876543444444 


Q ss_pred             cccccccccCCCcEEEecCC
Q 027255           76 DKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st   95 (226)
                            ..++++..++..+.
T Consensus       276 ------~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          276 ------TLLKRDGTMTLVGA  289 (369)
T ss_dssp             ------TTEEEEEEEEECCC
T ss_pred             ------HHhccCCEEEEecc
Confidence                  33445555555543

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.97  E-value=0.0023  Score=55.96  Aligned_cols=106  Identities=15%  Similarity=0.101  Sum_probs=68.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcC----------CchhHHHHHHC-C-------CcccCCHHHHhh-hCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVIK-KCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr----------~~~~~~~l~~~-g-------~~~~~s~~~~~~-~advv   60 (226)
                      ++|.|.|.|++|+..|+.|.+.|.+|+ +.|+          +.+.+.++.+. |       .+.. +.++++. .||++
T Consensus       236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~~~DIl  314 (440)
T 3aog_A          236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLPVEFL  314 (440)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTCCCSEE
T ss_pred             CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcCCCcEE
Confidence            479999999999999999999999877 6676          56666666553 2       1222 3455543 69999


Q ss_pred             EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      +-|.+......+.       .+.+ .-++|+...+.. .+ .+..+.+.++|+.|+.
T Consensus       315 vPcA~~n~i~~~n-------a~~l-~ak~VvEgAN~p-~t-~eA~~iL~~~GI~~~P  361 (440)
T 3aog_A          315 VPAALEKQITEQN-------AWRI-RARIVAEGANGP-TT-PAADDILLEKGVLVVP  361 (440)
T ss_dssp             EECSSSSCBCTTT-------GGGC-CCSEEECCSSSC-BC-HHHHHHHHHHTCEEEC
T ss_pred             EecCCcCccchhh-------HHHc-CCcEEEecCccc-cC-HHHHHHHHHCCCEEEC
Confidence            9987542221111       2334 456777766542 22 3445667788988763

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.96  E-value=0.00016  Score=61.39  Aligned_cols=89  Identities=15%  Similarity=0.172  Sum_probs=53.1

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCe---EEEEc-C-CchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFK---VTVWN-R-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~---V~~~d-r-~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      |||+||| .|..|..|.+.|.++.|+   +.... + +..+.-.+......+.....+.++++|+||.|+|... .++..
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-s~~~a   80 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAM-SKVQA   80 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHH-HHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHH-HHHHH
Confidence            6899999 699999999999987654   44332 2 2111101111111111111133478999999998754 33333


Q ss_pred             hcccccccccCCCcEEEecCCC
Q 027255           75 FDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st~   96 (226)
                         .   ..++.|..+||.|+.
T Consensus        81 ---~---~~~~~G~~vID~Sa~   96 (344)
T 3tz6_A           81 ---P---RFAAAGVTVIDNSSA   96 (344)
T ss_dssp             ---H---HHHHTTCEEEECSST
T ss_pred             ---H---HHHhCCCEEEECCCc
Confidence               2   234578899999873

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.94  E-value=0.00082  Score=56.93  Aligned_cols=64  Identities=20%  Similarity=0.335  Sum_probs=49.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHH-CCCcc--------cCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVA-HGATV--------GGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~-~g~~~--------~~s~~~~~~~advvi~~~   64 (226)
                      |+|.|.| .|.+|+.+++.|++. ||+|++.+|++++...+.. .++..        ..+..++++++|+||-+.
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A   99 (372)
T 3slg_A           25 KKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV   99 (372)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence            5799998 599999999999998 9999999999887666544 23221        123445677899999765

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=96.94  E-value=0.0017  Score=53.16  Aligned_cols=71  Identities=15%  Similarity=0.161  Sum_probs=60.2

Q ss_pred             CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        43 g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      |+.++++..|+++++|++|+.+|.......++   +.++++++.|.+|.+++|++|-..-.+-+.+.++.+.+-
T Consensus       128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Ia---kkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIs  198 (358)
T 2b0j_A          128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNIT  198 (358)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEE
T ss_pred             CcEeecchHHHhcCCCEEEEecCCCCCcHHHH---HHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCee
Confidence            67889999999999999999999988777777   788999999999999999998877777776665555443

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.93  E-value=0.0014  Score=54.10  Aligned_cols=64  Identities=13%  Similarity=0.170  Sum_probs=39.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p   65 (226)
                      |+|.|.|. |.+|+.+++.|++.||+|++.+|+++... +....+.-..+..+++++  +|+||-+..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            58999987 99999999999999999999998765411 111122223345566665  899988763

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.92  E-value=0.0087  Score=51.59  Aligned_cols=44  Identities=27%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus       216 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~  260 (404)
T 3ip1_A          216 NVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD  260 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC
Confidence            68899999999998888888998 899999999999888877764

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.91  E-value=0.0015  Score=55.66  Aligned_cols=73  Identities=15%  Similarity=0.145  Sum_probs=52.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCc---hhHHHHHHCCCcccC--CHHHHh----hhCCeEEEecCCHHHH-H
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL---SKCDELVAHGATVGG--SPAEVI----KKCTITIGMLADPAAA-L   71 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~---~~~~~l~~~g~~~~~--s~~~~~----~~advvi~~~p~~~~~-~   71 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++   ++.+.+.+.|+...+  +..+.+    ...|+||-++..+..+ +
T Consensus       183 ~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  262 (366)
T 2cdc_A          183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNILG  262 (366)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHHHH
Confidence            68999999999999999988999999999998   888777776765431  111111    2367888877664444 4


Q ss_pred             HHh
Q 027255           72 SVV   74 (226)
Q Consensus        72 ~v~   74 (226)
                      ..+
T Consensus       263 ~~~  265 (366)
T 2cdc_A          263 NVI  265 (366)
T ss_dssp             HHG
T ss_pred             HHH
Confidence            444

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.89  E-value=0.0044  Score=53.77  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=70.1

Q ss_pred             CeEEEEecChhHHHHHHHHHh-CCCeEE-EEcC----------CchhHHHHHHC-C-------CcccCCHHHHhh-hCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVIK-KCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~-~G~~V~-~~dr----------~~~~~~~l~~~-g-------~~~~~s~~~~~~-~adv   59 (226)
                      ++|.|.|.|++|...++.|.+ .|.+|+ +.|.          +++.+.++.+. +       .... +..++.. .||+
T Consensus       210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~~~DI  288 (415)
T 2tmg_A          210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDI  288 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTCSCSE
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcCCCcE
Confidence            479999999999999999998 999877 5666          66777766654 2       1222 4555543 6999


Q ss_pred             EEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        60 vi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ++-|.+......+..       +.+ .-++|+...+.. . +.+-.+.+.++|+.|+..
T Consensus       289 liP~A~~n~i~~~~a-------~~l-~ak~V~EgAN~p-~-t~~a~~~l~~~Gi~~~PD  337 (415)
T 2tmg_A          289 LVPAALEGAIHAGNA-------ERI-KAKAVVEGANGP-T-TPEADEILSRRGILVVPD  337 (415)
T ss_dssp             EEECSSTTSBCHHHH-------TTC-CCSEEECCSSSC-B-CHHHHHHHHHTTCEEECH
T ss_pred             EEecCCcCccCcccH-------HHc-CCeEEEeCCCcc-c-CHHHHHHHHHCCCEEECh
Confidence            999976533222222       223 456777766542 2 234456677889887543

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.89  E-value=0.0024  Score=55.55  Aligned_cols=106  Identities=16%  Similarity=0.115  Sum_probs=61.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCCc---------------hhHHHHHHC-C-------CcccCCHHHHh-h
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTL---------------SKCDELVAH-G-------ATVGGSPAEVI-K   55 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~~---------------~~~~~l~~~-g-------~~~~~s~~~~~-~   55 (226)
                      ++|.|.|.|++|+..|+.|.+.|.+|+ +.|.++               +.+.++.+. |       .+.. +.++.. .
T Consensus       213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~~  291 (421)
T 2yfq_A          213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWTK  291 (421)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-CccchhcC
Confidence            479999999999999999999999877 668773               445454432 2       1222 122332 3


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      .||+++-|.+......+..       ..+ ..++|+...+.. .+ .+..+.+.++|+.|+.
T Consensus       292 ~~DIliP~A~~n~i~~~~A-------~~l-~ak~VvEgAN~P-~t-~ea~~il~~~GI~~~P  343 (421)
T 2yfq_A          292 EYDIIVPAALENVITGERA-------KTI-NAKLVCEAANGP-TT-PEGDKVLTERGINLTP  343 (421)
T ss_dssp             ---CEEECSCSSCSCHHHH-------TTC-CCSEEECCSSSC-SC-HHHHHHHHHHTCEEEC
T ss_pred             CccEEEEcCCcCcCCcccH-------HHc-CCeEEEeCCccc-cC-HHHHHHHHHCCCEEEC
Confidence            6999999876533333333       223 567777766542 22 3445666788988763

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.88  E-value=0.0034  Score=53.45  Aligned_cols=44  Identities=18%  Similarity=0.108  Sum_probs=37.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus       193 ~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~  237 (371)
T 1f8f_A          193 SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT  237 (371)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC
Confidence            68899999999988888777898 699999999998888777754

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.87  E-value=0.0019  Score=54.69  Aligned_cols=66  Identities=15%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhH--HHHHHC-CCcc-----cCC---HHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC--DELVAH-GATV-----GGS---PAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~--~~l~~~-g~~~-----~~s---~~~~~~~advvi~~~p~   66 (226)
                      |+|.|.|. |.+|+.+++.|++.|++|++.+|++++.  +.+... ++..     ..+   ..++++++|+||.+...
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            6 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            57899985 9999999999999999999999988765  444432 3211     112   45667889999977643

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.87  E-value=0.0042  Score=49.02  Aligned_cols=64  Identities=14%  Similarity=0.061  Sum_probs=43.9

Q ss_pred             Ce-EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 ME-VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~-IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      || |-|.|. |.+|..+|+.|++.|++|++.+|++++.+.+.+.-          -.+...+..-+.+.+.++.++
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~   66 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----------SNNVGYRARDLASHQEVEQLF   66 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC----------SSCCCEEECCTTCHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----------hhccCeEeecCCCHHHHHHHH
Confidence            55 556665 89999999999999999999999999887765531          012233333455556666666

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.87  E-value=0.0007  Score=61.10  Aligned_cols=69  Identities=23%  Similarity=0.188  Sum_probs=51.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--C-CcccCCHHHH-hhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--G-ATVGGSPAEV-IKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--g-~~~~~s~~~~-~~~advvi~~~p~~~~   69 (226)
                      ++|.|+|+|.+|..+|+.|.+.|++|.+.|.++++++++...  | ..-...+.++ ++++|.+++++++++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~  421 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDST  421 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCchH
Confidence            468999999999999999999999999999999987655310  0 1111112222 4679999999988654

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.87  E-value=0.0032  Score=53.22  Aligned_cols=44  Identities=23%  Similarity=0.282  Sum_probs=38.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus       169 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~  213 (352)
T 3fpc_A          169 TVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT  213 (352)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc
Confidence            58899999999988888888898 799999999998887777753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.86  E-value=0.0011  Score=54.44  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |+|.|||.|..|..-++.|.+.|++|++++.+..
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            5799999999999999999999999999987653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.86  E-value=0.0011  Score=56.29  Aligned_cols=87  Identities=17%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC------CHHHHh-hhCCeEEEecCC--HHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG------SPAEVI-KKCTITIGMLAD--PAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~------s~~~~~-~~advvi~~~p~--~~~~~~   72 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+..+-      +..+.+ ...|+||-++..  +..++.
T Consensus       182 ~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~  261 (360)
T 1piw_A          182 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNI  261 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCCTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHHHHH
Confidence            68999999999999888888899999999999998888877764321      222222 256888888765  333322


Q ss_pred             HhhcccccccccCCCcEEEecCC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                             ....++++..++..+.
T Consensus       262 -------~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          262 -------MPKAMKVGGRIVSISI  277 (360)
T ss_dssp             -------GGGGEEEEEEEEECCC
T ss_pred             -------HHHHhcCCCEEEEecC
Confidence                   2344555555655543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.85  E-value=0.0061  Score=50.99  Aligned_cols=43  Identities=21%  Similarity=0.084  Sum_probs=38.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|+ |.+|..+++.+...|++|++.++++++.+.+.+.|+
T Consensus       148 ~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~  191 (333)
T 1v3u_A          148 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF  191 (333)
T ss_dssp             EEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             EEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence            5889998 999999999999999999999999998887766664

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.85  E-value=0.0016  Score=53.86  Aligned_cols=84  Identities=14%  Similarity=0.108  Sum_probs=57.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCH---HH---HhhhCCeEEEecCCHHHHHHHh
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSP---AE---VIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~---~~---~~~~advvi~~~p~~~~~~~v~   74 (226)
                      +|.|+|+ |.+|...++.+...|++|++.++++++.+.+.+.|+...-+.   .+   .+...|+||- +.. ..++..+
T Consensus       128 ~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~~~~~  205 (302)
T 1iz0_A          128 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KEVEESL  205 (302)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TTHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HHHHHHH
Confidence            6889998 999999999998999999999999999888887776532221   22   2245788887 655 3444443


Q ss_pred             hcccccccccCCCcEEEecC
Q 027255           75 FDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~s   94 (226)
                             ..++++..++..+
T Consensus       206 -------~~l~~~G~~v~~g  218 (302)
T 1iz0_A          206 -------GLLAHGGRLVYIG  218 (302)
T ss_dssp             -------TTEEEEEEEEEC-
T ss_pred             -------HhhccCCEEEEEe
Confidence                   3344444555544

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.85  E-value=0.003  Score=54.04  Aligned_cols=44  Identities=20%  Similarity=0.077  Sum_probs=38.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|.|.+|...++.+...| .+|++.++++++.+.+.+.|+.
T Consensus       198 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~  242 (380)
T 1vj0_A          198 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD  242 (380)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc
Confidence            6899999999999998888899 6999999999998888777753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.85  E-value=0.0028  Score=55.90  Aligned_cols=110  Identities=11%  Similarity=0.096  Sum_probs=72.1

Q ss_pred             CeEEEEecCh----------hHHHHHHHHHhCCCeEEEEcCCchhHH--HHHH-----------CCCcccCCHHHHhhhC
Q 027255            1 MEVGFLGLGI----------MGKAISMNLLRNGFKVTVWNRTLSKCD--ELVA-----------HGATVGGSPAEVIKKC   57 (226)
Q Consensus         1 m~IgvIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~--~l~~-----------~g~~~~~s~~~~~~~a   57 (226)
                      .+|+|+|+-.          -...+++.|.+.|.+|.+||+.-...+  ....           .++..+.++.++++++
T Consensus       330 ~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  409 (467)
T 2q3e_A          330 KKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGA  409 (467)
T ss_dssp             CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHHTTC
T ss_pred             CEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHHhCC
Confidence            3689999875          788899999999999999998633221  1110           0345567889999999


Q ss_pred             CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      |+|++++..++ .+..-  .+.+...++...+|+|.-.....    ..+.+.+.|+.|..
T Consensus       410 d~~vi~t~~~~-f~~~~--~~~~~~~~~~~~~i~D~r~~~~~----~~~~~~~~g~~~~~  462 (467)
T 2q3e_A          410 HAVVICTEWDM-FKELD--YERIHKKMLKPAFIFDGRRVLDG----LHNELQTIGFQIET  462 (467)
T ss_dssp             SEEEECSCCGG-GGGSC--HHHHHHHSCSSCEEEESSCTTTT----CHHHHHHHTCEEEE
T ss_pred             cEEEEecCChh-hhcCC--HHHHHHhcCCCCEEEeCCCcCCc----hHHHHHhcCcEEEE
Confidence            99999998854 33221  12344445455569998776421    12334556777754

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.84  E-value=0.0021  Score=58.34  Aligned_cols=116  Identities=16%  Similarity=0.078  Sum_probs=64.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCH--
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADP--   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~--   67 (226)
                      .+|.|||+|..|..+|++|+..|. +++++|.+.=....+.++        |...+....+.+.  +.++-+...+..  
T Consensus       327 arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~Ip  406 (615)
T 4gsl_A          327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIP  406 (615)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeecccc
Confidence            379999999999999999999996 699999875332223222        2222222333332  244544443210  


Q ss_pred             -------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           68 -------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        68 -------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                             ..-+..+ ..+.+.+.+..-.+|||++-. +..-..+.+.+.+.+..++++
T Consensus       407 m~gh~v~~e~~~~l-~~~~l~~ll~~~DlVvd~tDn-~~tR~~ln~~c~~~~~PlI~a  462 (615)
T 4gsl_A          407 MIGHKLVNEEAQHK-DFDRLRALIKEHDIIFLLVDS-RESRWLPSLLSNIENKTVINA  462 (615)
T ss_dssp             CTTCCCSCHHHHHH-HHHHHHHHHHHCSEEEECCSS-GGGTHHHHHHHHHTTCEEEEE
T ss_pred             ccCccccchhhhcC-CHHHHHHHhhcCCEEEecCCC-HHHHHHHHHHHHHcCCeEEEE
Confidence                   0000000 001111223344677777654 334456677777788888876

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.83  E-value=0.0075  Score=54.29  Aligned_cols=68  Identities=10%  Similarity=0.095  Sum_probs=53.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcc----cCCHHHH----hhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV----GGSPAEV----IKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~----~~s~~~~----~~~advvi~~~p~~~~   69 (226)
                      ++|.|+|.|.+|..+++.|.+.|++|.+.|.++++++.+... +..+    ..+.+.+    ++++|.+++ +++++.
T Consensus       128 ~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D~~  204 (565)
T 4gx0_A          128 GHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLSDPD  204 (565)
T ss_dssp             SCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSCHHH
T ss_pred             CeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eCCcHH
Confidence            368899999999999999999999999999999999999887 7543    1222222    356898887 555443

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=96.83  E-value=0.0025  Score=55.44  Aligned_cols=65  Identities=14%  Similarity=0.121  Sum_probs=44.4

Q ss_pred             CeEEEEecChh-HHHHHHHHHh--C---CCeEEEEcCCchhHHHHH---H----CCCc--ccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIM-GKAISMNLLR--N---GFKVTVWNRTLSKCDELV---A----HGAT--VGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~m-G~~~A~~l~~--~---G~~V~~~dr~~~~~~~l~---~----~g~~--~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+|.. +..+...|+.  .   +.+|.++|+++++++...   .    ...+  .+.+..+++++||+||++.-
T Consensus         3 ~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viitag   82 (417)
T 1up7_A            3 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   82 (417)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcCC
Confidence            69999999984 2222334454  3   568999999998755421   1    1122  34577789999999999983

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.81  E-value=0.0026  Score=54.18  Aligned_cols=114  Identities=11%  Similarity=0.127  Sum_probs=70.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|..|+.++.+|+..|. +++++|++.-....+..+        |...+....+.+.  +.++-+...+..-. 
T Consensus       120 ~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~i~-  198 (353)
T 3h5n_A          120 KVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNIN-  198 (353)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECCCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecccC-
Confidence            79999999999999999999996 699999875444344332        2111222222222  24554444432100 


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      ..     ..+.. +..-.+|||++.........+.+.+.+.++.++++.+.|
T Consensus       199 ~~-----~~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g  244 (353)
T 3h5n_A          199 DY-----TDLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVN  244 (353)
T ss_dssp             SG-----GGGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             ch-----hhhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            00     01222 455678899765433366677888888999999886544

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.79  E-value=0.00094  Score=56.96  Aligned_cols=65  Identities=12%  Similarity=0.108  Sum_probs=48.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.|. |.+|+.+++.|++.||+|++.+|++.+.......++..       ..+..++++++|+||-+..
T Consensus        30 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           30 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            57999987 99999999999999999999999876543222223221       1234566778999998754

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.78  E-value=0.0017  Score=54.07  Aligned_cols=64  Identities=22%  Similarity=0.380  Sum_probs=48.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHC-CCc-----ccC---CHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GAT-----VGG---SPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~-g~~-----~~~---s~~~~~~~advvi~~~   64 (226)
                      |+|.|.|. |.+|+.+++.|++. |++|++.+|++++.+.+... ++.     ..+   ...++++++|+||-+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A   75 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV   75 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence            78999987 99999999999998 89999999998776544322 221     121   2445677899999864

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=96.77  E-value=0.00094  Score=57.46  Aligned_cols=88  Identities=16%  Similarity=0.276  Sum_probs=53.1

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCC-CeEE-EE-cC-Cchh-HHHHH-----------HCCCcccC-CHHHHhhhCCeEEEe
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNG-FKVT-VW-NR-TLSK-CDELV-----------AHGATVGG-SPAEVIKKCTITIGM   63 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G-~~V~-~~-dr-~~~~-~~~l~-----------~~g~~~~~-s~~~~~~~advvi~~   63 (226)
                      ||+||| .|..|..|.+.|.++- .++. ++ .+ +..+ +....           .....+.. +..+.++++|+||+|
T Consensus        21 kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~Dvvf~a  100 (381)
T 3hsk_A           21 KAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSG  100 (381)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCCEEEEC
Confidence            799999 5999999999888764 3554 43 22 2222 22111           01122211 122145789999999


Q ss_pred             cCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        64 ~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +|... .++..   .   ..++.|..|||.|+.
T Consensus       101 lp~~~-s~~~~---~---~~~~~G~~VIDlSa~  126 (381)
T 3hsk_A          101 LDADV-AGDIE---K---SFVEAGLAVVSNAKN  126 (381)
T ss_dssp             CCHHH-HHHHH---H---HHHHTTCEEEECCST
T ss_pred             CChhH-HHHHH---H---HHHhCCCEEEEcCCc
Confidence            98854 34443   2   224578899999863

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.76  E-value=0.0036  Score=52.85  Aligned_cols=88  Identities=14%  Similarity=0.121  Sum_probs=53.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhC---CCeEEEE-cC-CchhHHHHHHC----C-------------------Cccc--CCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN---GFKVTVW-NR-TLSKCDELVAH----G-------------------ATVG--GSP   50 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~---G~~V~~~-dr-~~~~~~~l~~~----g-------------------~~~~--~s~   50 (226)
                      +||||+|.|.+|+.+.+.|.++   .++|... ++ +++....+.+.    |                   +.+.  .++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   80 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence            5899999999999999999876   3676644 54 34443333311    1                   1122  245


Q ss_pred             HHH-hh--hCCeEEEecCCHHHHHHHhhcccccccccCCCc--EEEecCC
Q 027255           51 AEV-IK--KCTITIGMLADPAAALSVVFDKGGVLEQICPGK--GYIDMST   95 (226)
Q Consensus        51 ~~~-~~--~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~--ivvd~st   95 (226)
                      +++ .+  ++|+||.|+|.....+ ..   .   .+++.|.  +|||.+.
T Consensus        81 ~~l~w~~~~vDvV~~atg~~~s~e-~a---~---~~l~aGakkvVId~~a  123 (332)
T 1hdg_O           81 SKLPWKDLGVDFVIESTGVFRNRE-KA---E---LHLQAGAKKVIITAPA  123 (332)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHH-HH---T---HHHHTTCSEEEESSCC
T ss_pred             HHCcccccCCCEEEECCccchhHH-HH---H---HHHHcCCcEEEEeCCC
Confidence            554 23  7999999998744332 22   1   2233455  7777764

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=96.74  E-value=9.7e-05  Score=62.51  Aligned_cols=87  Identities=14%  Similarity=0.147  Sum_probs=51.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEE---EE-cCCc-hhHHHHHHCCCcccC-CHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVT---VW-NRTL-SKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~---~~-dr~~-~~~~~l~~~g~~~~~-s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      |||+|+| .|.+|+.+.+.|.+.+|++.   .. .+.. .+.-.+....+.+.. ++.+ + ++|+||.|+|..... +.
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~-~-~~DvV~~a~g~~~s~-~~   77 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGP-L-PVDLVLASAGGGISR-AK   77 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSC-C-CCSEEEECSHHHHHH-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhh-c-CCCEEEECCCccchH-HH
Confidence            7999999 99999999999997777532   21 1110 000000001111111 2333 4 899999999864433 33


Q ss_pred             hhcccccccccCCCcEEEecCCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      .   .   .+++.|..+||.|+.
T Consensus        78 a---~---~~~~~G~~vId~s~~   94 (331)
T 2yv3_A           78 A---L---VWAEGGALVVDNSSA   94 (331)
T ss_dssp             H---H---HHHHTTCEEEECSSS
T ss_pred             H---H---HHHHCCCEEEECCCc
Confidence            3   2   234567889998875

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=96.73  E-value=0.0038  Score=53.69  Aligned_cols=110  Identities=18%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCC--CeEE-E-EcCCchhHHHHHH-CCCccc--CC------------------------
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNG--FKVT-V-WNRTLSKCDELVA-HGATVG--GS------------------------   49 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G--~~V~-~-~dr~~~~~~~l~~-~g~~~~--~s------------------------   49 (226)
                      ||+|+|+ |.+|+.....+.++.  ++|. + .+++.+++.+... .+...+  .+                        
T Consensus         6 rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~~~   85 (388)
T 1r0k_A            6 TVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGADA   85 (388)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHHH
T ss_pred             EEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCccH
Confidence            6999999 999999999998863  6655 2 5888876655433 233221  11                        


Q ss_pred             HHHHhhh-CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEec
Q 027255           50 PAEVIKK-CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        50 ~~~~~~~-advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +.++++. .|+|+.+++....++.++       ..++.|+.|+-.+.- ....-..+.+.++++|+.++-.
T Consensus        86 ~~el~~~~iDvVV~ai~G~aGl~ptl-------aAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~liPV  149 (388)
T 1r0k_A           86 LVEAAMMGADWTMAAIIGCAGLKATL-------AAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPV  149 (388)
T ss_dssp             HHHHHTSCCSEEEECCCSGGGHHHHH-------HHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHHcCCCCEEEEeCCCHHHHHHHH-------HHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence            1133321 699999997755565554       566789988877652 2223445666677789888533

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.73  E-value=0.0033  Score=53.37  Aligned_cols=113  Identities=14%  Similarity=0.149  Sum_probs=69.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~   69 (226)
                      .+|.|||+|..|..++++|+..|. +++++|.+.=....+..+        |-..+....+.+.  +.++-+...+..  
T Consensus        37 ~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~--  114 (346)
T 1y8q_A           37 SRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED--  114 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC--
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc--
Confidence            379999999999999999999997 799998654322222222        2112222222222  245555555431  


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      +...      ....+..-.+||+++ -.+.....+.+.+.+.++.++++.+.|
T Consensus       115 ~~~~------~~~~~~~~dvVv~~~-d~~~~r~~ln~~~~~~~ip~i~~~~~G  160 (346)
T 1y8q_A          115 IEKK------PESFFTQFDAVCLTC-CSRDVIVKVDQICHKNSIKFFTGDVFG  160 (346)
T ss_dssp             GGGC------CHHHHTTCSEEEEES-CCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred             cCcc------hHHHhcCCCEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEeecc
Confidence            1110      112233446777764 456677778888888899888886555

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.72  E-value=0.0019  Score=54.05  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=45.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-------ccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-------VGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-------~~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.|. |.+|+.+++.|++.|++|++.+|+++.      .++.       -..+..++++++|+||-+..
T Consensus        20 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   86 (347)
T 4id9_A           20 HMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGA   86 (347)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence            57999987 999999999999999999999998765      2222       12234567788999997753

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.72  E-value=0.0036  Score=54.37  Aligned_cols=106  Identities=17%  Similarity=0.230  Sum_probs=69.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcC----------CchhHHHHHHC-C-Ccc-cCCHHHHh-hhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-ATV-GGSPAEVI-KKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr----------~~~~~~~l~~~-g-~~~-~~s~~~~~-~~advvi~~~p   65 (226)
                      ++|.|.|.|++|+..|+.|.+.|.+|+ +.|+          +.+.+.++.+. + +.- .-+..++. -.||+++-|..
T Consensus       219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DVliP~A~  298 (419)
T 3aoe_E          219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVLVLAAR  298 (419)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceEEEeccc
Confidence            479999999999999999999999977 7787          77777776654 2 110 11223333 37999999875


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      ......+..       +.+ .=++|+...+.. .+ .+..+.+.++|+.|+
T Consensus       299 ~n~i~~~~A-------~~l-~ak~V~EgAN~p-~t-~~A~~~L~~~Gi~~~  339 (419)
T 3aoe_E          299 EGALDGDRA-------RQV-QAQAVVEVANFG-LN-PEAEAYLLGKGALVV  339 (419)
T ss_dssp             TTCBCHHHH-------TTC-CCSEEEECSTTC-BC-HHHHHHHHHHTCEEE
T ss_pred             ccccccchH-------hhC-CceEEEECCCCc-CC-HHHHHHHHHCCCEEE
Confidence            433222222       223 335777776542 22 445567888899886

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.71  E-value=0.0034  Score=52.51  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=47.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCch----hHHHHHH-------CCCcc-------cCCHHHHhhhCCeEE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS----KCDELVA-------HGATV-------GGSPAEVIKKCTITI   61 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~----~~~~l~~-------~g~~~-------~~s~~~~~~~advvi   61 (226)
                      |+|.|.|. |.+|+.+++.|++.|++|++.+|++.    ..+.+..       .++..       ..+..++++++|+||
T Consensus        26 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi  105 (351)
T 3ruf_A           26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVL  105 (351)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCEEE
Confidence            58999985 99999999999999999999999654    2333332       22221       223456677899999


Q ss_pred             EecC
Q 027255           62 GMLA   65 (226)
Q Consensus        62 ~~~p   65 (226)
                      -+..
T Consensus       106 h~A~  109 (351)
T 3ruf_A          106 HQAA  109 (351)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.70  E-value=0.0037  Score=52.99  Aligned_cols=71  Identities=17%  Similarity=0.150  Sum_probs=49.2

Q ss_pred             eEEEEecChhHHHH-HHHH-HhCCCe-EEEEcCCch---hHHHHHHCCCcccC----CHHHHhh----hCCeEEEecCCH
Q 027255            2 EVGFLGLGIMGKAI-SMNL-LRNGFK-VTVWNRTLS---KCDELVAHGATVGG----SPAEVIK----KCTITIGMLADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~-A~~l-~~~G~~-V~~~dr~~~---~~~~l~~~g~~~~~----s~~~~~~----~advvi~~~p~~   67 (226)
                      +|.|+|+|.+|... ++.+ ...|.+ |++.+++++   +.+.+.+.|+..++    +..+ +.    ..|+||-++..+
T Consensus       175 ~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg~Dvvid~~g~~  253 (357)
T 2b5w_A          175 SAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQMDFIYEATGFP  253 (357)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCCEEEEEECSCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCCCCEEEECCCCh
Confidence            68999999999988 7766 667887 999999998   88888888875431    1112 11    356666666554


Q ss_pred             HHHHHH
Q 027255           68 AAALSV   73 (226)
Q Consensus        68 ~~~~~v   73 (226)
                      ..++..
T Consensus       254 ~~~~~~  259 (357)
T 2b5w_A          254 KHAIQS  259 (357)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            334333

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=96.70  E-value=0.0063  Score=53.98  Aligned_cols=112  Identities=17%  Similarity=0.210  Sum_probs=70.1

Q ss_pred             CeEEEEecChhHHH-HHHHHHhCCCeEEEEcCCchh-HHHHHHCCCccc--CCHHHHhhhCCeEEEec--CC-HHHHHHH
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVG--GSPAEVIKKCTITIGML--AD-PAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~--~s~~~~~~~advvi~~~--p~-~~~~~~v   73 (226)
                      ++|.|||+|..|.. +|+.|.+.|++|.++|..... .+.+.+.|+.+.  .+. +.++++|+|++.-  |. ...+...
T Consensus        20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~~i~~~~p~~~~a   98 (491)
T 2f00_A           20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRP-ENVRDASVVVVSSAISADNPEIVAA   98 (491)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEECTTCCTTCHHHHHH
T ss_pred             CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHHHH
Confidence            47999999999997 999999999999999986543 456777787664  233 3356789888753  21 1222221


Q ss_pred             hh-c------ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255           74 VF-D------KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGG  113 (226)
Q Consensus        74 ~~-~------~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~  113 (226)
                      .. +      .+-+...+....+|--+.| ....++.-++..+...|.
T Consensus        99 ~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~  146 (491)
T 2f00_A           99 HEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGL  146 (491)
T ss_dssp             HHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            10 0      0111122222244444444 566777778888888775

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.69  E-value=0.0014  Score=55.57  Aligned_cols=86  Identities=22%  Similarity=0.150  Sum_probs=56.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-HCCCccc---CCHHHH---hhhCCeEEEecCCHHHHHHHh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVG---GSPAEV---IKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~---~s~~~~---~~~advvi~~~p~~~~~~~v~   74 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.|+..+   .+.+.+   ....|+||-++..+..++..+
T Consensus       183 ~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~  262 (357)
T 2cf5_A          183 RGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYL  262 (357)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCSHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHHHHHH
Confidence            688999999999998888888999999999999988777 6675432   121111   124677777776533343433


Q ss_pred             hcccccccccCCCcEEEecC
Q 027255           75 FDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~s   94 (226)
                             ..++++..++..+
T Consensus       263 -------~~l~~~G~iv~~G  275 (357)
T 2cf5_A          263 -------SLLKLDGKLILMG  275 (357)
T ss_dssp             -------TTEEEEEEEEECS
T ss_pred             -------HHhccCCEEEEeC
Confidence                   3334444455444

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.69  E-value=0.0049  Score=51.98  Aligned_cols=44  Identities=16%  Similarity=0.127  Sum_probs=38.6

Q ss_pred             eEEEE-ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvI-G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+ |.|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus       153 ~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~  197 (346)
T 3fbg_A          153 TLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD  197 (346)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc
Confidence            58889 799999999999988999999999999998888776653

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.67  E-value=0.0071  Score=50.62  Aligned_cols=44  Identities=23%  Similarity=0.213  Sum_probs=38.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-HHCCCc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-VAHGAT   45 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-~~~g~~   45 (226)
                      +|.|+|+ |.+|...++.+...|++|++.++++++.+.+ .+.|+.
T Consensus       152 ~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~  197 (336)
T 4b7c_A          152 TVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD  197 (336)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCC
Confidence            6889998 9999999999999999999999999998888 566653

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.65  E-value=0.018  Score=48.73  Aligned_cols=41  Identities=12%  Similarity=0.014  Sum_probs=35.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH   42 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~   42 (226)
                      +|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.
T Consensus       182 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          182 PVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            588999999999988888889987 99999999998877665

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.65  E-value=0.0022  Score=49.36  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=40.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh---CCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~---advvi~~~   64 (226)
                      |||.|.|. |.+|+.+++.|+ +|++|++.+|+++.    ....+.-..+.++++++   .|+||.+.
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~----~~~D~~~~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGD----VTVDITNIDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSS----EECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccc----eeeecCCHHHHHHHHHHhCCCCEEEECC
Confidence            68888875 899999999999 99999999998651    01111111233344444   68888775

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.64  E-value=0.0042  Score=52.27  Aligned_cols=44  Identities=16%  Similarity=0.068  Sum_probs=37.4

Q ss_pred             eEEEEecChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+... |.+|++.++++++.+.+.+.|+.
T Consensus       174 ~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~  218 (345)
T 3jv7_A          174 TAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD  218 (345)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC
Confidence            588999999999877777666 78999999999999888887754

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=96.64  E-value=0.0061  Score=50.51  Aligned_cols=73  Identities=22%  Similarity=0.310  Sum_probs=57.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      +++.|||- ..+|++||..|.+.+..|+++....              .++.+..++||+|+.++..+..+.        
T Consensus       180 k~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G~p~~i~--------  237 (303)
T 4b4u_A          180 KHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVGKAELIQ--------  237 (303)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSCSTTCBC--------
T ss_pred             CEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccCCCCccc--------
Confidence            36889996 5679999999999999999986533              356778899999999997754321        


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                       .+.+++|.+|||.+..
T Consensus       238 -~d~vk~GavVIDVGin  253 (303)
T 4b4u_A          238 -KDWIKQGAVVVDAGFH  253 (303)
T ss_dssp             -GGGSCTTCEEEECCCB
T ss_pred             -cccccCCCEEEEecee
Confidence             1457899999998864

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.63  E-value=0.0018  Score=54.87  Aligned_cols=52  Identities=15%  Similarity=0.233  Sum_probs=41.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~   64 (226)
                      |||.|.| .|.+|+.+++.|++.|+ +|+..||+.+            ..+..++++++|+||-+.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d------------~~~l~~~~~~~d~Vih~a   54 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK------------EEELESALLKADFIVHLA   54 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCC------------HHHHHHHHHHCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCC------------HHHHHHHhccCCEEEECC
Confidence            8999999 69999999999999999 9999999411            123445566789988775

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.63  E-value=0.0056  Score=52.01  Aligned_cols=44  Identities=16%  Similarity=-0.030  Sum_probs=38.7

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+| .|.+|...++.+...|++|++.++++++.+.+.+.|+.
T Consensus       166 ~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~  210 (362)
T 2c0c_A          166 KVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCD  210 (362)
T ss_dssp             EEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCc
Confidence            688999 79999999999999999999999999998888776653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.63  E-value=0.0019  Score=50.52  Aligned_cols=33  Identities=21%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      .|.|||+|.-|...|..|+++|++|+++++.+.
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG   36 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            499999999999999999999999999998754

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.62  E-value=0.0049  Score=53.56  Aligned_cols=107  Identities=14%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeE-EEEcCC----------chhHHHHHHC-C------CcccCCHHHHh-hhCCeEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRT----------LSKCDELVAH-G------ATVGGSPAEVI-KKCTITI   61 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V-~~~dr~----------~~~~~~l~~~-g------~~~~~s~~~~~-~~advvi   61 (226)
                      ++|.|.|.|++|...|+.|.+.|.+| .+.|.+          .+.+.++.+. |      .+.. +.++++ ..||+.+
T Consensus       222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~~~DIli  300 (424)
T 3k92_A          222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEKDCDILV  300 (424)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHSCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceeccccEEe
Confidence            47899999999999999999999986 467776          5566665544 2      2222 345544 4699998


Q ss_pred             EecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        62 ~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      -|........+.       .+.+ .-++|+...+.. . +.+..+.+.++|+.|+..
T Consensus       301 PcA~~n~I~~~~-------a~~l-~ak~V~EgAN~p-~-t~eA~~iL~~rGI~~~PD  347 (424)
T 3k92_A          301 PAAISNQITAKN-------AHNI-QASIVVERANGP-T-TIDATKILNERGVLLVPD  347 (424)
T ss_dssp             ECSCSSCBCTTT-------GGGC-CCSEEECCSSSC-B-CHHHHHHHHHTTCEEECH
T ss_pred             ecCcccccChhh-------Hhhc-CceEEEcCCCCC-C-CHHHHHHHHHCCCEEECc
Confidence            887552211111       2334 456777766542 2 244567788899987644

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.62  E-value=0.0041  Score=52.36  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=34.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~   41 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+
T Consensus       167 ~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  207 (343)
T 2dq4_A          167 SVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP  207 (343)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            68899999999999998888998 89999999888665443

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=96.60  E-value=0.0062  Score=53.76  Aligned_cols=112  Identities=19%  Similarity=0.180  Sum_probs=69.8

Q ss_pred             CeEEEEecChhHHH-HHHHHHhCCCeEEEEcCCchh-HHHHHHCCCccc--CCHHHHhhhCCeEEEec--CC-HHHHHHH
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVG--GSPAEVIKKCTITIGML--AD-PAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~--~s~~~~~~~advvi~~~--p~-~~~~~~v   73 (226)
                      ++|.|||+|..|.. +|+.|.+.|++|.++|..... .+.+.+.|+.+.  ... +.++++|+|+..-  |. ...+...
T Consensus        19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~~i~~~~~~~~~a   97 (475)
T 1p3d_A           19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVSSAIKDDNPELVTS   97 (475)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHHHH
Confidence            47999999999997 999999999999999986543 456777787664  233 3456789888753  21 1222221


Q ss_pred             hh-c------ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255           74 VF-D------KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGG  113 (226)
Q Consensus        74 ~~-~------~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~  113 (226)
                      .. +      .+-+...+....+|--+.| ....++.-++..+...|.
T Consensus        98 ~~~~i~vl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~  145 (475)
T 1p3d_A           98 KQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKL  145 (475)
T ss_dssp             HHTTCCEEEHHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcEEEHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            10 0      0111111222234434444 566777778888888875

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.59  E-value=0.003  Score=53.22  Aligned_cols=65  Identities=20%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhC-CC-eEEEEcCCchhHHHHHHC----CCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRN-GF-KVTVWNRTLSKCDELVAH----GATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~-G~-~V~~~dr~~~~~~~l~~~----g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.| .|.+|+.+++.|++. |+ +|++++|++.+.+.+...    ++..       ..+..+++++.|+||-+..
T Consensus        22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa  100 (344)
T 2gn4_A           22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAA  100 (344)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence            5788998 599999999999999 97 999999998877665431    2211       1234456678899998763

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.59  E-value=0.0012  Score=54.25  Aligned_cols=64  Identities=23%  Similarity=0.278  Sum_probs=45.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc----CC--HHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GS--PAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s--~~~~~~~advvi~~~p   65 (226)
                      |||.|.|. |.+|+.+++.|++.|++|++.+|+++........++...    .+  ..++++. |+||-+..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCC
Confidence            89999998 999999999999999999999998765443322222210    11  3334444 88887753

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.59  E-value=0.0053  Score=51.55  Aligned_cols=43  Identities=21%  Similarity=0.105  Sum_probs=37.9

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-HCCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGA   44 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~   44 (226)
                      +|.|+|+ |.+|..+++.+...|++|++.++++++.+.+. +.|+
T Consensus       158 ~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~  202 (345)
T 2j3h_A          158 TVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGF  202 (345)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            5889997 99999999999999999999999999988876 4564

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.58  E-value=0.0014  Score=58.40  Aligned_cols=62  Identities=16%  Similarity=0.260  Sum_probs=47.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |+|.|.| .|.+|+.+++.|++.||+|++.+|++.+.+.+   .........++++++|+||-+..
T Consensus       148 m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v---~~d~~~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          148 LTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKR---FWDPLNPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCE---ECCTTSCCTTTTTTCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccce---eecccchhHHhcCCCCEEEECCC
Confidence            6899999 59999999999999999999999987764221   11122344566788999998764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.58  E-value=0.0063  Score=50.93  Aligned_cols=43  Identities=21%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+| .|.+|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus       151 ~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga  194 (334)
T 3qwb_A          151 YVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA  194 (334)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence            588999 8999999999999999999999999999887777664

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=96.57  E-value=0.0044  Score=52.43  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=27.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCC---CeEEE-EcC-CchhHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG---FKVTV-WNR-TLSKCDEL   39 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G---~~V~~-~dr-~~~~~~~l   39 (226)
                      ||||+|.|.+|+.+.+.|.+++   ++|.. .++ +++....+
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l   46 (339)
T 3b1j_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHL   46 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHH
Confidence            8999999999999999998863   56654 444 44444433

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.57  E-value=0.013  Score=49.67  Aligned_cols=44  Identities=14%  Similarity=0.096  Sum_probs=36.5

Q ss_pred             eEEEEe-cChhHHHHHHHHHh-CCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLG-LGIMGKAISMNLLR-NGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+| .|.+|...++.+.. .|.+|++.++++++.+.+.+.|+.
T Consensus       174 ~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad  219 (363)
T 4dvj_A          174 AILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAH  219 (363)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCC
Confidence            578998 89999987776665 589999999999998888777753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.56  E-value=0.0042  Score=52.38  Aligned_cols=44  Identities=14%  Similarity=0.072  Sum_probs=38.5

Q ss_pred             eEEEEecC-hhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLG-IMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G-~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|.| .+|..+++.+... |.+|++.++++++.+.+.+.|+.
T Consensus       173 ~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~  218 (347)
T 1jvb_A          173 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD  218 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS
T ss_pred             EEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC
Confidence            58899999 9999999999988 99999999999998877766653

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.56  E-value=0.019  Score=50.47  Aligned_cols=67  Identities=18%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHC-CCcccC--CHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAH-GATVGG--SPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~-g~~~~~--s~~~~~~~advvi~~~p~~   67 (226)
                      ++|.|||.|..|..-++.|.+.|++|++++.+.. ..+.+.+. +++...  -..+.++++|+||.++.++
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~   83 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDD   83 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCH
Confidence            5799999999999999999999999999987543 33444432 343311  1123456899999887664

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.55  E-value=0.0053  Score=51.68  Aligned_cols=43  Identities=26%  Similarity=0.163  Sum_probs=38.2

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|+ |.+|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus       162 ~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga  205 (342)
T 4eye_A          162 TVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA  205 (342)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence            6889998 999999999999999999999999999887776664

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.54  E-value=0.0059  Score=50.92  Aligned_cols=43  Identities=21%  Similarity=0.083  Sum_probs=37.4

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+| .|.+|..+++.+...|++|++.++++++.+.+.+.|+
T Consensus       143 ~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~  186 (327)
T 1qor_A          143 QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA  186 (327)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC
Confidence            588999 6999999999999999999999999988877766554

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.53  E-value=0.006  Score=50.92  Aligned_cols=44  Identities=20%  Similarity=0.027  Sum_probs=38.6

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+| .|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus       143 ~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~  187 (325)
T 3jyn_A          143 IILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAW  187 (325)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC
Confidence            588899 79999999999988999999999999998888776653

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.52  E-value=0.0047  Score=51.38  Aligned_cols=64  Identities=20%  Similarity=0.215  Sum_probs=46.1

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhH---H---HHHH-CCC-------cccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKC---D---ELVA-HGA-------TVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~---~---~l~~-~g~-------~~~~s~~~~~~~advvi~~~   64 (226)
                      |+|.|.| .|.+|+.+++.|++.||+|++..|+++..   .   .+.. .++       .-..+..++++++|+||-+.
T Consensus        10 ~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   88 (338)
T 2rh8_A           10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA   88 (338)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred             CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence            5788998 69999999999999999999888876532   1   2221 122       11235667888899998764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=96.50  E-value=0.013  Score=51.03  Aligned_cols=45  Identities=18%  Similarity=0.056  Sum_probs=39.9

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV   46 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~   46 (226)
                      +|.|+|+ |.+|...++.+...|.+|++.++++++.+.+.+.|+..
T Consensus       223 ~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~  268 (447)
T 4a0s_A          223 IVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDL  268 (447)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCE
Confidence            5889998 99999999999999999999999999998888877653

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.50  E-value=0.006  Score=50.78  Aligned_cols=64  Identities=28%  Similarity=0.362  Sum_probs=46.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHH---HHHHC------------CCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD---ELVAH------------GATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~---~l~~~------------g~~~~~s~~~~~~~advvi~~~   64 (226)
                      ++|.|.| .|.+|+.+++.|++.||+|++..|+++..+   .+...            .+.-..+..++++++|+||-+.
T Consensus         6 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A   85 (337)
T 2c29_D            6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVA   85 (337)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEECC
T ss_pred             CEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEEec
Confidence            4688888 799999999999999999999888876332   22111            1222235667888899998764

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=96.50  E-value=0.0018  Score=52.94  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=44.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p   65 (226)
                      |||.|.|. |.+|+.+++.|+ .||+|++.+|++...    ...+.-..+..+++++  +|+||-+..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~----~~D~~d~~~~~~~~~~~~~d~vih~a~   63 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEF----CGDFSNPKGVAETVRKLRPDVIVNAAA   63 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSS----CCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccc----cccCCCHHHHHHHHHhcCCCEEEECcc
Confidence            89999997 999999999999 899999999986311    1111112234556665  899998763

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.49  E-value=0.0054  Score=51.59  Aligned_cols=43  Identities=19%  Similarity=0.004  Sum_probs=37.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|. |.+|...++.+...|++|++.++++++.+.+.+.|+
T Consensus       169 ~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga  212 (343)
T 2eih_A          169 DVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGA  212 (343)
T ss_dssp             EEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence            6889999 999999999999999999999999998877765553

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.49  E-value=0.0036  Score=52.10  Aligned_cols=65  Identities=18%  Similarity=0.295  Sum_probs=45.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH----H---CCCcc-------cCCHHHHhh--hCCeEEEe
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV----A---HGATV-------GGSPAEVIK--KCTITIGM   63 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~----~---~g~~~-------~~s~~~~~~--~advvi~~   63 (226)
                      |+|.|.| .|.+|+.+++.|++.|++|++.+|+++......    .   .++..       ..+..++++  +.|+||-+
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   85 (341)
T 3enk_A            6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHF   85 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEEC
Confidence            5788998 599999999999999999999999766543322    1   12221       123445565  68998877


Q ss_pred             cC
Q 027255           64 LA   65 (226)
Q Consensus        64 ~p   65 (226)
                      ..
T Consensus        86 A~   87 (341)
T 3enk_A           86 AA   87 (341)
T ss_dssp             CC
T ss_pred             cc
Confidence            63

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.49  E-value=0.0055  Score=51.37  Aligned_cols=65  Identities=15%  Similarity=0.108  Sum_probs=47.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCch----hHHHHHH-------CCCcc-------cCCHHHHhhhCCeEE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS----KCDELVA-------HGATV-------GGSPAEVIKKCTITI   61 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~----~~~~l~~-------~g~~~-------~~s~~~~~~~advvi   61 (226)
                      |+|.|.|. |.+|+.+++.|++.|++|++.+|++.    ..+.+.+       .++..       ..+..++++++|+||
T Consensus        28 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  107 (352)
T 1sb8_A           28 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVL  107 (352)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCEEE
Confidence            57999988 99999999999999999999998763    3333321       23221       123446677899999


Q ss_pred             EecC
Q 027255           62 GMLA   65 (226)
Q Consensus        62 ~~~p   65 (226)
                      -+..
T Consensus       108 h~A~  111 (352)
T 1sb8_A          108 HQAA  111 (352)
T ss_dssp             ECCS
T ss_pred             ECCc
Confidence            8864

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.49  E-value=0.0053  Score=49.83  Aligned_cols=81  Identities=11%  Similarity=0.014  Sum_probs=51.2

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEE--ecCCHHHHHHHhhcc
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG--MLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~--~~p~~~~~~~v~~~~   77 (226)
                      |+.+|  |.+.+|.++|+.|++.|.+|.+++|++++++++.+.       +.+.  ..+++.+  =+.+.+.++.++   
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~-------i~~~--g~~~~~~~~Dvt~~~~v~~~~---   75 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE-------LRGM--GKEVLGVKADVSKKKDVEEFV---   75 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTSHHHHHHHH---
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEccCCCHHHHHHHH---
Confidence            45566  457899999999999999999999999887765432       1110  1222222  245666666666   


Q ss_pred             cccccccCCCcEEEecC
Q 027255           78 GGVLEQICPGKGYIDMS   94 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~s   94 (226)
                      +.+.+...+=.++|+..
T Consensus        76 ~~~~~~~G~iDiLVNNA   92 (254)
T 4fn4_A           76 RRTFETYSRIDVLCNNA   92 (254)
T ss_dssp             HHHHHHHSCCCEEEECC
T ss_pred             HHHHHHcCCCCEEEECC
Confidence            44444443445566644

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.49  E-value=0.029  Score=46.94  Aligned_cols=44  Identities=25%  Similarity=0.218  Sum_probs=37.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|.. +++.++++++.+.+++.|+.
T Consensus       163 ~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~  207 (346)
T 4a2c_A          163 NVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM  207 (346)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS
T ss_pred             EEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe
Confidence            688999999999988888888976 56789999999888888864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.47  E-value=0.0047  Score=53.14  Aligned_cols=44  Identities=20%  Similarity=0.173  Sum_probs=38.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus       188 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~  232 (398)
T 2dph_A          188 HVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE  232 (398)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc
Confidence            68999999999988887777898 899999999998888777753

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.47  E-value=0.0013  Score=54.89  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH--CCCc-------ccCCHHHHhh--hCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGAT-------VGGSPAEVIK--KCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~--~g~~-------~~~s~~~~~~--~advvi~~~p   65 (226)
                      |+|.|.|. |.+|+.+++.|++.|++|++.+|++.....+..  .++.       -..+..++++  ++|+||-+..
T Consensus        21 ~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   97 (330)
T 2pzm_A           21 MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAA   97 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCc
Confidence            68999987 999999999999999999999996543221111  1211       1123445666  7899988764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.46  E-value=0.0077  Score=50.91  Aligned_cols=44  Identities=20%  Similarity=0.147  Sum_probs=38.6

Q ss_pred             eEEEE-ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvI-G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+ |.|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus       170 ~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~  214 (353)
T 4dup_A          170 SVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAK  214 (353)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC
Confidence            58888 679999999999999999999999999998888776653

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=96.44  E-value=0.0024  Score=57.21  Aligned_cols=41  Identities=34%  Similarity=0.421  Sum_probs=36.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~   42 (226)
                      ++.|+|.|.+|++++..|++.|++|++++|+.++.+.+.+.
T Consensus       366 ~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~  406 (523)
T 2o7s_A          366 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEA  406 (523)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            47789999999999999999999999999999998887653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.44  E-value=0.0042  Score=51.59  Aligned_cols=65  Identities=18%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhH--HHHHHC----CCcc-------cCCHHHHhhh--CCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC--DELVAH----GATV-------GGSPAEVIKK--CTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~--~~l~~~----g~~~-------~~s~~~~~~~--advvi~~~   64 (226)
                      |+|.|.|. |.+|+.+++.|++.|++|++.+|++++.  +.+...    ++..       ..+..+++++  .|+||-+.
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   83 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLA   83 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEECC
Confidence            57899987 9999999999999999999999987643  233322    1211       1123455555  49999876


Q ss_pred             C
Q 027255           65 A   65 (226)
Q Consensus        65 p   65 (226)
                      .
T Consensus        84 ~   84 (345)
T 2z1m_A           84 A   84 (345)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.42  E-value=0.0083  Score=50.37  Aligned_cols=43  Identities=19%  Similarity=0.197  Sum_probs=37.8

Q ss_pred             eEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|+| .+|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus       147 ~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga  190 (340)
T 3gms_A          147 VLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA  190 (340)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC
T ss_pred             EEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC
Confidence            68899997 99999999888899999999999999888777664

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.41  E-value=0.011  Score=47.33  Aligned_cols=40  Identities=15%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+
T Consensus        11 ~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   51 (261)
T 3n74_A           11 VALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAG   51 (261)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            4666765 789999999999999999999999998877654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.41  E-value=0.0079  Score=50.30  Aligned_cols=43  Identities=21%  Similarity=0.026  Sum_probs=37.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|. |.+|..+++.+...|++|++.++++++.+.+.+.|+
T Consensus       148 ~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~  191 (333)
T 1wly_A          148 YVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGC  191 (333)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC
T ss_pred             EEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence            5788995 999999999999999999999999988877765553

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.38  E-value=0.0043  Score=53.96  Aligned_cols=106  Identities=17%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcC----------CchhHHHHHHC-CC------------cccCCHHHHhh-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-GA------------TVGGSPAEVIK-   55 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr----------~~~~~~~l~~~-g~------------~~~~s~~~~~~-   55 (226)
                      ++|.|.|.|++|...|+.|.+.|.+|+ +.|.          +++.+.++.+. |.            ....+.++.+. 
T Consensus       211 k~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~~~  290 (421)
T 1v9l_A          211 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKL  290 (421)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhhcC
Confidence            479999999999999999999999877 6676          55655554433 11            12213344443 


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      .||+.+-|-.. .    .+.  ..-.+.+ .=++|+...+. |.+ .+-.+.+.++|+.|+
T Consensus       291 ~~Dil~P~A~~-~----~I~--~~~a~~l-~ak~V~EgAN~-p~t-~~a~~~l~~~Gi~~~  341 (421)
T 1v9l_A          291 DVDIFVPAAIE-N----VIR--GDNAGLV-KARLVVEGANG-PTT-PEAERILYERGVVVV  341 (421)
T ss_dssp             CCSEEEECSCS-S----CBC--TTTTTTC-CCSEEECCSSS-CBC-HHHHHHHHTTTCEEE
T ss_pred             CccEEEecCcC-C----ccc--hhhHHHc-CceEEEecCCC-cCC-HHHHHHHHHCCCEEe
Confidence            68988887633 2    121  1112333 33567766653 222 445567888898886

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=96.38  E-value=0.003  Score=53.33  Aligned_cols=88  Identities=17%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEEEE-cC-CchhHHHHHHC----C-------------------Cccc--CCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVW-NR-TLSKCDELVAH----G-------------------ATVG--GSPAE   52 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~~~-dr-~~~~~~~l~~~----g-------------------~~~~--~s~~~   52 (226)
                      +||||+|.|.+|+.+.+.|.++ .++|... ++ +++.+..+.+.    |                   +.+.  .++++
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~   81 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChhh
Confidence            4899999999999999999876 3565544 54 33333333311    1                   1122  24444


Q ss_pred             H-hh--hCCeEEEecCCHHHHHHHhhcccccccccCCCc--EEEecCC
Q 027255           53 V-IK--KCTITIGMLADPAAALSVVFDKGGVLEQICPGK--GYIDMST   95 (226)
Q Consensus        53 ~-~~--~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~--ivvd~st   95 (226)
                      + ++  ++|+||.|+|.....+. .   .   .+++.|.  +|||.+.
T Consensus        82 i~w~~~~vDvV~~atg~~~s~e~-a---~---~~l~~Gak~vVId~pa  122 (334)
T 3cmc_O           82 LAWGEIGVDIVVESTGRFTKRED-A---A---KHLEAGAKKVIISAPA  122 (334)
T ss_dssp             CCTGGGTCCEEEECSSSCCBHHH-H---T---HHHHTTCSEEEESSCC
T ss_pred             cCcccCccCEEEECCCchhhHHH-H---H---HHHHCCCCEEEEeCCC
Confidence            4 23  68999999986433322 2   1   2233454  7777664

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.37  E-value=0.0022  Score=52.15  Aligned_cols=56  Identities=20%  Similarity=0.262  Sum_probs=42.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--hCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~   64 (226)
                      |+|.|.|. |.+|+.+++.|+++||+|++.+|.+.        .+.-..+..++++  ++|+||-+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------D~~d~~~~~~~~~~~~~d~vi~~a   64 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLL--------DITNISQVQQVVQEIRPHIIIHCA   64 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTS--------CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccccc--------CCCCHHHHHHHHHhcCCCEEEECC
Confidence            47999995 99999999999999999999998431        1222233455666  489998775

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.37  E-value=0.0037  Score=52.49  Aligned_cols=65  Identities=25%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----CCCcc-------cCCHHHHhhh--CCeEEEecC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGATV-------GGSPAEVIKK--CTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----~g~~~-------~~s~~~~~~~--advvi~~~p   65 (226)
                      |+|.|.| .|.+|+.+++.|++.|++|++.+|++++...+..     .++..       ..+..+++++  .|+||-+..
T Consensus        10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   89 (357)
T 1rkx_A           10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAA   89 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECCC
Confidence            5799998 5999999999999999999999998765433321     12221       1123455665  799998864

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.33  E-value=0.03  Score=47.11  Aligned_cols=84  Identities=15%  Similarity=0.086  Sum_probs=55.2

Q ss_pred             EEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHHh------hhCCeEEEecCCHHH
Q 027255            3 VGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI------KKCTITIGMLADPAA   69 (226)
Q Consensus         3 IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-----~s~~~~~------~~advvi~~~p~~~~   69 (226)
                      ..+|  |.|.+|...++.+...|.+|++.++++++.+.+.+.|+..+     .+..+.+      ...|+||-|+.. ..
T Consensus       167 ~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~-~~  245 (349)
T 3pi7_A          167 AFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-PL  245 (349)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-HH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-hh
Confidence            3455  99999999999888899999999999999988887775421     1222222      246777777644 33


Q ss_pred             HHHHhhcccccccccCCCcEEEecC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      ....+       ..++++..++..+
T Consensus       246 ~~~~~-------~~l~~~G~iv~~G  263 (349)
T 3pi7_A          246 ASAIF-------NAMPKRARWIIYG  263 (349)
T ss_dssp             HHHHH-------HHSCTTCEEEECC
T ss_pred             HHHHH-------hhhcCCCEEEEEe
Confidence            33332       4445555555554

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.32  E-value=0.0098  Score=52.66  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=71.8

Q ss_pred             eEEEEecCh----------hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            2 EVGFLGLGI----------MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         2 ~IgvIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      +|+|+|+-.          =...+++.|.+.|.+|.+||+.-...     .....+.++.++++++|+|++++..++ .+
T Consensus       355 ~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~-----~~~~~~~~~~~~~~~ad~vvi~t~~~~-f~  428 (478)
T 3g79_A          355 KVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNY-----PGVEISDNLEEVVRNADAIVVLAGHSA-YS  428 (478)
T ss_dssp             EEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB-----TTBCEESCHHHHHTTCSEEEECSCCHH-HH
T ss_pred             EEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccc-----cCcceecCHHHHHhcCCEEEEecCCHH-HH
Confidence            688888742          36789999999999999999876521     234456889999999999999998854 33


Q ss_pred             HHhhcccccccccC-CCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           72 SVVFDKGGVLEQIC-PGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        72 ~v~~~~~~l~~~l~-~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      +.=  .+.+...++ +..+|+|.-....      .+.+++.|+.|..-.
T Consensus       429 ~~d--~~~~~~~~~~~~~~i~D~rn~~~------~~~~~~~g~~y~~ig  469 (478)
T 3g79_A          429 SLK--ADWAKKVSAKANPVIIDGRNVIE------PDEFIGKGFVYKGIG  469 (478)
T ss_dssp             SCC--HHHHHHHHCCSSCEEEESSSCSC------HHHHHTTTCEEEETT
T ss_pred             hhh--HHHHHHHhccCCCEEEECCCCCC------HHHHHhcCCEEEEec
Confidence            211  023344454 3789999887643      123356788876543

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=96.31  E-value=0.0092  Score=50.64  Aligned_cols=113  Identities=15%  Similarity=0.138  Sum_probs=77.0

Q ss_pred             eEEEEecChhHHHHHH---HHHhC--CCeEE-EEcCCch--hHHHHH---HCCCcccCCHHHHhh-hCCeEEEec-CCHH
Q 027255            2 EVGFLGLGIMGKAISM---NLLRN--GFKVT-VWNRTLS--KCDELV---AHGATVGGSPAEVIK-KCTITIGML-ADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~---~l~~~--G~~V~-~~dr~~~--~~~~l~---~~g~~~~~s~~~~~~-~advvi~~~-p~~~   68 (226)
                      ++.+.|.|.+|+.+++   .|.+.  ++++. ++ ++..  .+.++.   ..|+.+..|++++++ .+|++++.+ |..-
T Consensus        24 ~~vi~~~g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~~~gipv~~d~~~al~~~~d~lvig~a~~gg  102 (350)
T 2g0t_A           24 PAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPVRYDVPVVSSVEKAKEMGAEVLIIGVSNPGG  102 (350)
T ss_dssp             EEEEECTTTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-CCSCCBEESSHHHHHHTTCCEEEECCCSCCH
T ss_pred             CEEEEeCCCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCCCCCceeeCCHHHHHhcCCCEEEEEecCCCC
Confidence            5889999999999988   44665  46643 45 3311  111111   236888889999986 699999986 4433


Q ss_pred             HHH-HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           69 AAL-SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        69 ~~~-~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+. .+.   +.+...++.|.-||+..-.......++.+.++++|+.++|.
T Consensus       103 ~l~~~~~---~~I~~Al~~G~nVvsglh~~l~~~pel~~~A~~~Gv~i~dv  150 (350)
T 2g0t_A          103 YLEEQIA---TLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIIDI  150 (350)
T ss_dssp             HHHHHHH---HHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHHTCCEEES
T ss_pred             CCCHHHH---HHHHHHHHcCCcEEeCChhhhhCCHHHHHHHHHCCCEEEEe
Confidence            333 444   55677888999999877654455556777888889999998

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.31  E-value=0.02  Score=45.61  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=33.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++-|.|. |.+|..+|+.|++.|++|++.+|++++.+.+.+
T Consensus        11 ~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   51 (253)
T 3qiv_A           11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAK   51 (253)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            3556665 899999999999999999999999988776543

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.30  E-value=0.013  Score=46.08  Aligned_cols=40  Identities=25%  Similarity=0.304  Sum_probs=33.5

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      +|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus         7 ~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   47 (234)
T 2ehd_A            7 AVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAA   47 (234)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            366665 5899999999999999999999999887766543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.29  E-value=0.011  Score=48.44  Aligned_cols=80  Identities=13%  Similarity=0.024  Sum_probs=50.1

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+.+|  |.+.+|.++|+.|++.|.+|.+.+|+.+++++..+.          .-.++-.+-.=+.+.+.++.++   +.
T Consensus        30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~----------~g~~~~~~~~Dv~~~~~v~~~~---~~   96 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAE----------IGGGAVGIQADSANLAELDRLY---EK   96 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCTTCEEEECCTTCHHHHHHHH---HH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------cCCCeEEEEecCCCHHHHHHHH---HH
Confidence            46666  457899999999999999999999999988765432          1111212222245666666666   44


Q ss_pred             cccccCCCcEEEecC
Q 027255           80 VLEQICPGKGYIDMS   94 (226)
Q Consensus        80 l~~~l~~g~ivvd~s   94 (226)
                      +.+...+=.++|+..
T Consensus        97 ~~~~~G~iDiLVNNA  111 (273)
T 4fgs_A           97 VKAEAGRIDVLFVNA  111 (273)
T ss_dssp             HHHHHSCEEEEEECC
T ss_pred             HHHHcCCCCEEEECC
Confidence            444332223455543

>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A

Probab=96.27  E-value=0.0046  Score=50.57  Aligned_cols=100  Identities=10%  Similarity=0.040  Sum_probs=64.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      .||++||.-   -.+.+.+ +.+++|+++|++++       .|.......++++..||+|++.-  ...+...+   +.+
T Consensus       142 ~kV~vIG~~---P~i~~~l-~~~~~v~V~d~~p~-------~g~~p~~~~e~ll~~aD~viiTG--sTlvN~Ti---~~l  205 (270)
T 2h1q_A          142 KKVGVVGHF---PHLESLL-EPICDLSILEWSPE-------EGDYPLPASEFILPECDYVYITC--ASVVDKTL---PRL  205 (270)
T ss_dssp             SEEEEESCC---TTHHHHH-TTTSEEEEEESSCC-------TTCEEGGGHHHHGGGCSEEEEET--HHHHHTCH---HHH
T ss_pred             CEEEEECCC---HHHHHHH-hCCCCEEEEECCCC-------CCCCChHHHHHHhhcCCEEEEEe--eeeecCCH---HHH
Confidence            479999983   3455544 56899999999997       24445455667889999999875  24555555   666


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                      ++..++.+.+|-...+.|-.-     .+-+.|+.+|.+-+.
T Consensus       206 L~~~~~a~~vvl~GPS~p~~P-----~lf~~Gv~~l~G~~V  241 (270)
T 2h1q_A          206 LELSRNARRITLVGPGTPLAP-----VLFEHGLQELSGFMV  241 (270)
T ss_dssp             HHHTTTSSEEEEESTTCCCCG-----GGGGTTCSEEEEEEE
T ss_pred             HHhCccCCeEEEEecChhhhH-----HHHhcCcCEEEEeEe
Confidence            777766644444443332211     123578887776543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.27  E-value=0.017  Score=46.33  Aligned_cols=40  Identities=18%  Similarity=0.281  Sum_probs=33.7

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++-|.| .|.+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus        10 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   50 (259)
T 4e6p_A           10 SALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAA   50 (259)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            355666 4899999999999999999999999988776543

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=96.27  E-value=0.0038  Score=52.86  Aligned_cols=39  Identities=18%  Similarity=0.308  Sum_probs=28.4

Q ss_pred             eEEEEecChhHHHHHHHHHh---C-CCeEEEE-cC-CchhHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR---N-GFKVTVW-NR-TLSKCDELV   40 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~---~-G~~V~~~-dr-~~~~~~~l~   40 (226)
                      ||||+|.|.+|+.+.+.|.+   + .++|... ++ +++....+.
T Consensus         4 kVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll   48 (339)
T 2x5j_O            4 RVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLL   48 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHh
Confidence            89999999999999999987   4 5676544 44 444444443

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.25  E-value=0.019  Score=45.46  Aligned_cols=40  Identities=18%  Similarity=0.376  Sum_probs=33.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++-|.|. |.+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus         5 ~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~   45 (235)
T 3l6e_A            5 HIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQEL   45 (235)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            3566665 899999999999999999999999988776543

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=96.25  E-value=0.0075  Score=51.72  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=27.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCC---CeEEEE-cC-CchhHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW-NR-TLSKCDEL   39 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G---~~V~~~-dr-~~~~~~~l   39 (226)
                      ||||+|+|.+|+.+.+.|..++   ++|... ++ +++.+..+
T Consensus         4 kVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~l   46 (380)
T 2d2i_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHL   46 (380)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHh
Confidence            8999999999999999998763   566544 44 34433333

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.24  E-value=0.02  Score=45.57  Aligned_cols=40  Identities=15%  Similarity=0.122  Sum_probs=33.9

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++-|.|. |.+|..+|+.|++.|++|++.+|++++.+.+.+
T Consensus         7 ~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   47 (245)
T 1uls_A            7 AVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE   47 (245)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4666665 899999999999999999999999888776654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.24  E-value=0.01  Score=52.16  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=67.5

Q ss_pred             eEEEEecC----------hhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHH
Q 027255            2 EVGFLGLG----------IMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G----------~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      ||+|+|+-          .=...+++.|.+.|.+|.+||+.-.. ........+..+.++.++++++|+|++++..++. 
T Consensus       320 ~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~f-  398 (450)
T 3gg2_A          320 CVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKEF-  398 (450)
T ss_dssp             EEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSCCGGG-
T ss_pred             EEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccCCHHH-
Confidence            68888874          23678999999999999999987532 2222112366778999999999999999987543 


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      ++.=  ...+...+ +..+|+|.-......        ++.|+.|..
T Consensus       399 ~~~~--~~~~~~~~-~~~~i~D~r~~~~~~--------~~~g~~y~~  434 (450)
T 3gg2_A          399 RMPD--WSALSQAM-AASLVIDGRNVYELP--------ADSDFTLLN  434 (450)
T ss_dssp             SSCC--HHHHHHHS-SSCEEEESSCCCCCC------------CEEEE
T ss_pred             hhcC--HHHHHHhc-CCCEEEECCCCCChH--------HhCCCEEEE
Confidence            2210  02233334 467899988764321        345777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	7e-32
d3cuma2	162	c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase	2e-25
d1i36a2	152	c.2.1.6 (A:1-152) Conserved hypothetical protein M	1e-19
d2cvza2	156	c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase	2e-19
d2pgda2	176	c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase	9e-19
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	1e-18
d3cuma1	134	a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge	3e-13
d1vpda1	133	a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge	7e-12
d2cvza1	132	a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge	6e-11
d2i76a2	153	c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The	1e-10
d2pv7a2	152	c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {	9e-07
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	4e-06
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	6e-06
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	8e-06
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	8e-06
d2ahra2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	9e-06
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	1e-04
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	1e-04
d1yqga2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	3e-04
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	3e-04
d1np3a2	182	c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer	0.004

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score =  112 bits (280), Expect = 7e-32
 Identities = 52/151 (34%), Positives = 83/151 (54%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M+VGF+GLGIMGK +S NLL+ G+ + V +R      +++A GA    +   + ++C + 
Sbjct: 1   MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I ML +      V   + G++E   PG   IDMS++    S +IS A+ +KG   L+APV
Sbjct: 61  ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 120

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           SG +  A  G L ++  G+K +      + K
Sbjct: 121 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMK 151

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 95.3 bits (236), Expect = 2e-25
 Identities = 47/149 (31%), Positives = 75/149 (50%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           + F+GLG MG  ++ NLL+ G+ + V++   S  D LVA GA+   S  + ++   + I 
Sbjct: 4   IAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVIS 63

Query: 63  MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
           ML        +  D  G+L  I PG   ++ ST+   ++ KI  A   +G   L+APVSG
Sbjct: 64  MLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSG 123

Query: 123 SKQPAETGQLVILSAGEKDLGGIANPMFK 151
               A  G L  +  G+ +    A P+F+
Sbjct: 124 GTAGAAAGTLTFMVGGDAEALEKARPLFE 152

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 79.9 bits (196), Expect = 1e-19
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 8/149 (5%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           + VGF+G G + + ++  L   G +V       S      A    V  +  E +  C + 
Sbjct: 1   LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
           I  +    A  +       V           D++ +  ET    S  I   G     A +
Sbjct: 61  ISAVTPGVALGAARRAGRHVRGIYV------DINNISPETVRMASSLIEKGGFVD--AAI 112

Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPM 149
            GS +       +I S  + +     N  
Sbjct: 113 MGSVRRKGADIRIIASGRDAEEFMKLNRY 141

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 79.6 bits (195), Expect = 2e-19
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 5/149 (3%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           V F+GLG MG  ++ +L R    + VWNRT  K         +       V +   I   
Sbjct: 3   VAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTC 61

Query: 63  MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
           +         V      +   +  G  ++D ++ + E S +++  +  KG  +L+APVSG
Sbjct: 62  LPTTR----EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 117

Query: 123 SKQPAETGQLVILSAGEKDLGGIANPMFK 151
               AE G L ++  G ++      P   
Sbjct: 118 GTSGAEAGTLTVMLGGPEEAVERVRPFLA 146

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

 Score = 78.5 bits (192), Expect = 9e-19
 Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 6/156 (3%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-----SPAEVIK 55
            ++  +GL +MG+ + +N+  +GF V  +NRT+SK D+ +A+ A         S  E++ 
Sbjct: 3   ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVS 62

Query: 56  KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115
           K      ++    A  +V      ++  +  G   ID    ++  +++  R +  KG  F
Sbjct: 63  KLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF 122

Query: 116 LEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           + + VSG +  A  G  ++   G K+       +F+
Sbjct: 123 VGSGVSGGEDGARYGPSLMPG-GNKEAWPHIKAIFQ 157

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 77.7 bits (190), Expect = 1e-18
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 9/159 (5%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M+VG +GLG+MG  +++N+   GFKV V+NRT SK +E +   A+   +      +    
Sbjct: 2   MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEA 61

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPG--------KGYIDMSTVDHETSIKISRAITSKG 112
                       ++   G   +                +D      +   + ++ + + G
Sbjct: 62  FAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAG 121

Query: 113 GHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
             FL   +SG ++ A  G       G   +     P+ +
Sbjct: 122 LRFLGMGISGGEEGARKGPAFFPG-GTLSVWEEIRPIVE 159

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 62.4 bits (151), Expect = 3e-13
 Identities = 17/72 (23%), Positives = 29/72 (40%)

Query: 147 NPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 206
           NP            +Y+  F  +   KD+ LA      +A S P+ + A   ++     G
Sbjct: 58  NPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQG 117

Query: 207 LGDNDFSAVFEV 218
             + DFS V ++
Sbjct: 118 YAERDFSVVQKL 129

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 58.9 bits (142), Expect = 7e-12
 Identities = 20/78 (25%), Positives = 35/78 (44%)

Query: 145 IANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 204
             + +   K P ++  N+ P F +    KD+  AL         +P+ AA  E  +  R+
Sbjct: 49  AGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRA 108

Query: 205 LGLGDNDFSAVFEVVKDL 222
            G G++D SA+    + L
Sbjct: 109 DGHGNDDHSALACYYEKL 126

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 56.2 bits (135), Expect = 6e-11
 Identities = 13/66 (19%), Positives = 26/66 (39%)

Query: 157 MLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVF 216
           +L   +   F L    KD+ +A+ + D      P+   A E ++ A+     D D     
Sbjct: 61  VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEAL 120

Query: 217 EVVKDL 222
            +++  
Sbjct: 121 RLLERW 126

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 18/149 (12%), Positives = 42/149 (28%), Gaps = 10/149 (6%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           + F+G G + +     L        + +R++ +   L         +  +  +   +   
Sbjct: 2   LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61

Query: 63  MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122
           ++ D        + K             +  S        K S   +    H   +  S 
Sbjct: 62  IVPDR-------YIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASI---HPNFSFSSL 111

Query: 123 SKQPAETGQLVILSAGEKDLGGIANPMFK 151
            K      Q+V    G++    I   + +
Sbjct: 112 EKALEMKDQIVFGLEGDERGLPIVKKIAE 140

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.9 bits (105), Expect = 9e-07
 Identities = 19/141 (13%), Positives = 41/141 (29%), Gaps = 24/141 (17%)

Query: 3   VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           +  +G  G +G   +  L  +G+ +++ +R      E +   A V      +        
Sbjct: 12  IVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIE 71

Query: 62  GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLEAP 119
            +                    +       D+++V  E   K+    T    G H +   
Sbjct: 72  RL-----------------KPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGA 114

Query: 120 VSGSKQPAETGQLVILSAGEK 140
                  +   Q+V+   G  
Sbjct: 115 DIA----SMAKQVVVRCDGRF 131

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 13/42 (30%), Positives = 26/42 (61%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42
          M++G +GLG++G +++ +L R G  +   +R  S C++ V  
Sbjct: 1  MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER 42

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 1   MEVGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSP--AEVIKKC 57
           M V  L G G +GK +++ L   G ++ V +R   K +   A    + G      +  + 
Sbjct: 1   MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNED 60

Query: 58  TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSI 102
                 +A          D    L+ I   K  +         + 
Sbjct: 61  AAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAK 105

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 2/101 (1%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGATVGGSPAEVIKKCTIT 60
           V  LG G + +     L  +G KVTV  RTL    +L A    +T               
Sbjct: 5   VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE 64

Query: 61  IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETS 101
           +       + +   F    +   I   K  +  S V     
Sbjct: 65  VAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMM 105

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC 36
          M V  LG G MG A+S+ L+ NG +V +W       
Sbjct: 1  MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTE 36

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 42.0 bits (97), Expect = 9e-06
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38
          M++G +G+G M  AI   L +   ++ +   +L +  E
Sbjct: 1  MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKE 38

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 15/68 (22%), Positives = 21/68 (30%)

Query: 3  VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
             LGLG  G A +  L   G  V  W+    +  E+   GA +   P          + 
Sbjct: 4  YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63

Query: 63 MLADPAAA 70
               A  
Sbjct: 64 SDIGLAVK 71

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR 31
          M++  LG G +G+     L + G +V  W R
Sbjct: 1  MKITVLGCGALGQLWLTALCKQGHEVQGWLR 31

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCD 37
          M V FLG G M  A++  L++ G +++ + NR   K +
Sbjct: 1  MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRE 38

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 4/109 (3%)

Query: 43  GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSI 102
           G  V     E ++   I I  L        ++       + I  G       T+      
Sbjct: 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFA 184

Query: 103 KISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
           KI + +  +  +   +   G     +    +      ++       + K
Sbjct: 185 KIFKDLGREDLNIT-SYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGK 232

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 14/68 (20%), Positives = 22/68 (32%)

Query: 3  VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
          V  +G G  G A + NL  +G  VTV  R+ S                   +    + + 
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMI 78

Query: 63 MLADPAAA 70
          +  D    
Sbjct: 79 LTPDEFQG 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	100.0
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	100.0
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.97
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.96
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.95
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.93
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.85
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.79
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.76
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.73
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.69
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.67
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.64
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.63
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.62
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.62
d1vpda1	133	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.61
d2cvza1	132	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.54
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.51
d3cuma1	134	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.51
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.38
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.35
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.35
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.33
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.32
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	99.31
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.29
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.26
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	99.24
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.21
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.2
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.19
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.15
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	99.11
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	99.0
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.99
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.96
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.95
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.9
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.89
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.86
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.85
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.85
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.82
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.73
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.7
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.69
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.65
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.59
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.51
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.48
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.47
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.46
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.42
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.41
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.4
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.4
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.39
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.38
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.37
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	98.35
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	98.34
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.33
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.3
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.24
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	98.22
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	98.21
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.21
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.2
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.19
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.19
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.18
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	98.17
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.17
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.15
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	98.14
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.12
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.11
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.09
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.08
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.08
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	98.05
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	98.05
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.02
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	98.01
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.96
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.96
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.95
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.95
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.91
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.9
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.9
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.83
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.82
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.78
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.76
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.72
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.71
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.7
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.69
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.66
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.63
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.63
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.58
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.57
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.57
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.56
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.55
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.54
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.52
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.5
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.5
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.48
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	97.47
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.44
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.43
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.43
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.41
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.39
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.34
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.34
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.27
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.25
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.22
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	97.21
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.2
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.19
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.15
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.15
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.05
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.04
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.99
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.99
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.99
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.94
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.94
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.94
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.93
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.91
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.89
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.87
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.86
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.86
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.86
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.82
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.81
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.81
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.8
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.74
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.73
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.72
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.69
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.67
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.67
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.64
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.63
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.63
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.61
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.58
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.57
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.56
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.56
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.55
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	96.53
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.53
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.52
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.51
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.5
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.5
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	96.5
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.49
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.49
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	96.47
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.47
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.46
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.45
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.45
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.44
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.44
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.42
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.39
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.38
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.37
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.37
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.35
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.35
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.34
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.3
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.3
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	96.29
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.29
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	96.28
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.27
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.26
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.24
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	96.21
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.2
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.2
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.19
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.17
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.13
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.12
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.12
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.1
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.09
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.09
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.07
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.07
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	96.04
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.04
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.03
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.03
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	96.02
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.02
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.02
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.01
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.0
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.99
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.97
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.96
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	95.93
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.92
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.91
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.9
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.89
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.86
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.83
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.82
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.8
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.76
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.74
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	95.72
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.67
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.66
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.65
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.61
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.57
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.56
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.53
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.52
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.5
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.49
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.43
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.42
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.39
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.39
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.35
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.22
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.16
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.15
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.15
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.12
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.04
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.03
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.98
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.87
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.82
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	94.75
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.66
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.63
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.62
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.55
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.44
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.37
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.29
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.27
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.17
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.14
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.12
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.04
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	94.0
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.92
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	93.83
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	93.77
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.6
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.58
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	93.48
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	93.39
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.31
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.3
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	93.28
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.24
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	93.24
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.11
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.1
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.07
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	93.03
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	93.02
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.02
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	92.85
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.77
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	92.74
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.69
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	92.68
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.62
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.61
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.59
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.57
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	92.47
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.39
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.37
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.04
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.97
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.97
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	91.97
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.93
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	91.93
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	91.92
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.74
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.59
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.57
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.54
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	91.39
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	91.25
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	91.23
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	91.22
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	91.21
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	91.1
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	91.06
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.01
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.0
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	90.92
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.87
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.8
d2fz5a1	137	Flavodoxin {Megasphaera elsdenii [TaxId: 907]}	90.64
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.61
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.6
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.42
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	90.38
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	90.33
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	90.26
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	90.18
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.17
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.15
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	90.15
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	90.15
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	90.14
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	90.12
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	90.09
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.0
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	89.9
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	89.87
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	89.61
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.59
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	89.56
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.53
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	89.53
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	89.31
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	89.3
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	89.28
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	89.09
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	89.0
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.95
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	88.93
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.78
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	88.72
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	88.36
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	88.17
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	88.03
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	87.95
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.75
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	87.33
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	87.27
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.08
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	86.73
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.62
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	86.57
d5nula_	138	Flavodoxin {Clostridium beijerinckii [TaxId: 1520]	86.51
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	86.31
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.98
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	85.93
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	85.51
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	85.02
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	84.99
d1f4pa_	147	Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}	84.85
d1ls1a2	207	GTPase domain of the signal sequence recognition p	84.81
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	84.36
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	84.14
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	83.9
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	83.89
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	83.77
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	83.41
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	83.34
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	83.13
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	82.82
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	82.82
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	82.27
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	81.52
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	81.49
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.1
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	80.86

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3e-36  Score=230.86  Aligned_cols=152  Identities=34%  Similarity=0.594  Sum_probs=141.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||||||+|.||.+||++|+++||+|++|||++++.+.+.+.+...+.++.|+++++|+||+|+|++.++++++++++++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhcc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKG  152 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~  152 (226)
                      .+.++++++|||+||+.|...+++++.++++|++|+|+|++|++..++.|++++|+||++..-....++++.
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~  152 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKA  152 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHT
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999986332233344443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=9.7e-34  Score=216.97  Aligned_cols=141  Identities=31%  Similarity=0.559  Sum_probs=135.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      +||||||+|.||.+||++|.++||+|++|||++++.+.+...+...+.++.+++.++|+|++|+|++.++++++....++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999998777778


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCC
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKD  141 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~  141 (226)
                      .+.+.++++|||+||++|+.++++++.++++|+.|+|+||+|+|..++.|++++|+||++.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~  142 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAE  142 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHH
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHH
Confidence            8889999999999999999999999999999999999999999999999999999999863

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.97  E-value=6e-32  Score=209.59  Aligned_cols=153  Identities=24%  Similarity=0.367  Sum_probs=136.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC--------cccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA--------TVGGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~--------~~~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      +|||||+|.||.+||++|+++||+|++|||++++.+++.+.+.        ....++.+++..+|++++++|+++.+.++
T Consensus         4 nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v   83 (176)
T d2pgda2           4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNF   83 (176)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHH
T ss_pred             cEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHHH
Confidence            7999999999999999999999999999999999999988753        23445556677899999999999999999


Q ss_pred             hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccc
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGK  153 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~  153 (226)
                      .   +++.+.+++|++|||+||+.|..++++++.+.++|+.|+|+||+|++..++.|+ ++|+||++..-....++++..
T Consensus        84 ~---~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il~~~  159 (176)
T d2pgda2          84 I---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGI  159 (176)
T ss_dssp             H---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHHH
T ss_pred             H---HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHHHHH
Confidence            8   788899999999999999999999999999999999999999999999999999 799999987666667777766


Q ss_pred             ccccc
Q 027255          154 GPTML  158 (226)
Q Consensus       154 ~~~~~  158 (226)
                      +.++.
T Consensus       160 ~~kv~  164 (176)
T d2pgda2         160 AAKVG  164 (176)
T ss_dssp             SCBCT
T ss_pred             hcccC
Confidence            66553

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=5.7e-30  Score=194.61  Aligned_cols=135  Identities=26%  Similarity=0.433  Sum_probs=122.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL   81 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~   81 (226)
                      ||||||+|.||.+||+||.++||.+ +|||++++.+.+.+.+.....+ .+.+.++|++++++|++..+..+.   .++.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~---~~l~   76 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTREVYEVA---EALY   76 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHHHHHHH---HHHT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhhhhhhh---cccc
Confidence            7999999999999999999999865 7999999888887765555444 456678999999999998888877   7888


Q ss_pred             cccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCC
Q 027255           82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKD  141 (226)
Q Consensus        82 ~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~  141 (226)
                      +.+.+++++||+||++|..++++++.++++|+.|+|+||+|++..|++|+|++|+||++.
T Consensus        77 ~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~  136 (156)
T d2cvza2          77 PYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEE  136 (156)
T ss_dssp             TTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHH
T ss_pred             ccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHH
Confidence            999999999999999999999999999999999999999999999999999999999963

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.95  E-value=1.3e-28  Score=190.84  Aligned_cols=153  Identities=24%  Similarity=0.398  Sum_probs=130.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc--------cCCHHHH---hhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------GGSPAEV---IKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~--------~~s~~~~---~~~advvi~~~p~~~~   69 (226)
                      |||||||+|.||.+||++|+++||+|++|||++++.+++.+.+...        ..+..+.   +..++.++++++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            8999999999999999999999999999999999999998876422        2333333   3467889999998888


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchh
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPM  149 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~  149 (226)
                      ++.++   .++...+.++++++|+||..|...+++++.+.++++.|+|+||+|++..++.|+ ++|+||++..-....++
T Consensus        82 ~~~~~---~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~pi  157 (178)
T d1pgja2          82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPI  157 (178)
T ss_dssp             HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHH
T ss_pred             hhhhh---hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHHHH
Confidence            88888   677788899999999999999999999999999999999999999999999998 78999997544445566


Q ss_pred             hccccccc
Q 027255          150 FKGKGPTM  157 (226)
Q Consensus       150 ~~~~~~~~  157 (226)
                      ++..++++
T Consensus       158 l~~~~~~~  165 (178)
T d1pgja2         158 VEAAAAKA  165 (178)
T ss_dssp             HHHHSCBC
T ss_pred             HHHHhccc
Confidence            66555544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.93  E-value=1.6e-26  Score=174.63  Aligned_cols=130  Identities=21%  Similarity=0.282  Sum_probs=110.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      |||||||+|.||++||++|.++||+|++||+++++...+...++.++.++.|+++++|+||+|+|++...+.+.    .+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~----~~   76 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAAR----RA   76 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHH----HH
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHH----hh
Confidence            89999999999999999999999999999999988888777777778899999999999999999866554433    33


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE  139 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~  139 (226)
                      ...  .++++||+||.+|...+++++.+++.  .|+|+|++|+++.+..++..+ ++|+
T Consensus        77 ~~~--~~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~-~~G~  130 (152)
T d1i36a2          77 GRH--VRGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRII-ASGR  130 (152)
T ss_dssp             HTT--CCSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEE-EEST
T ss_pred             ccc--CCceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEE-EECC
Confidence            333  47899999999999999999988654  499999999999988888755 4554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.85  E-value=5e-21  Score=145.77  Aligned_cols=123  Identities=20%  Similarity=0.328  Sum_probs=99.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC-cccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~-~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |||+|||+|.||+.||++|.++||+|++|||+++..+++.+.|. ....+..++++++|+||+|+|. ..+++++   ++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl---~~   76 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL---EK   76 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH---HH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh---hh
Confidence            99999999999999999999999999999999999999888874 3445566788999999999987 5788888   78


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhc-CCcEEecCCCCChHhh
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSK-GGHFLEAPVSGSKQPA  127 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~-g~~~ld~pv~g~~~~a  127 (226)
                      +.+.++++++|+|+++........+.+...+. +.+.+.+|...++..+
T Consensus        77 l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a  125 (165)
T d2f1ka2          77 LIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGA  125 (165)
T ss_dssp             HGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGC
T ss_pred             hhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhh
Confidence            88999999999999998877777665543321 3455555555555443

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=2.5e-21  Score=145.58  Aligned_cols=130  Identities=12%  Similarity=0.011  Sum_probs=99.6

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccccc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLE   82 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~   82 (226)
                      |||||+|+||++|+++|.+.++.+.+|+|++++.+++.+.+...+.++.++++++|+||+|+|+ .++.+++   +++. 
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d-~~i~~v~---~~l~-   76 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPD-RYIKTVA---NHLN-   76 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCT-TTHHHHH---TTTC-
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccc-hhhhHHH---hhhc-
Confidence            7999999999999999977655567999999999999998877788899999999999999988 6788887   5542 


Q ss_pred             ccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCC
Q 027255           83 QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDL  142 (226)
Q Consensus        83 ~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~  142 (226)
                        .+++++|++|+..+....   +.....+++++++|..+++..+..++++++++||+..
T Consensus        77 --~~~~ivi~~s~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~  131 (153)
T d2i76a2          77 --LGDAVLVHCSGFLSSEIF---KKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERG  131 (153)
T ss_dssp             --CSSCCEEECCSSSCGGGG---CSSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTT
T ss_pred             --ccceeeeecccchhhhhh---hhhccccceeeeecccccchhhhccCcEEEEeCCHHH
Confidence              478999999987664332   2233446788999999988888888888999988643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.76  E-value=2.1e-18  Score=129.31  Aligned_cols=118  Identities=16%  Similarity=0.268  Sum_probs=97.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      +||+||| +|.||++||++|.++||+|++|||++...             .++.++++|++++++|. ..+..++   .+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~-~~~~~v~---~~   72 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSVPI-NLTLETI---ER   72 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECSCG-GGHHHHH---HH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhccccccccch-hhheeee---ec
Confidence            3799999 99999999999999999999999987653             34567889999999987 5666777   67


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE-ecCCCCChHhhccCcEEEEecc
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG  138 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l-d~pv~g~~~~a~~g~~~~~~gg  138 (226)
                      +.+.++++++++|++|+.+...+++.+.+   ...|+ +.|++|++.....+...+++.|
T Consensus        73 ~~~~~~~~~iiiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g  129 (152)
T d2pv7a2          73 LKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDG  129 (152)
T ss_dssp             HGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEE
T ss_pred             ccccccCCceEEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecC
Confidence            88889999999999999999888887654   33565 5699999888888877776633

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.73  E-value=1.6e-17  Score=124.59  Aligned_cols=105  Identities=17%  Similarity=0.279  Sum_probs=85.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |||||||+|+||++|+++|.++||++++|+|++++.+++.+. |+..+.+.+++++++|+||+|++ ++.+++++     
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl-----   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL-----   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH-----
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHh-----
Confidence            899999999999999999999999999999999999988654 99999999999999999999996 47788887     


Q ss_pred             cccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEe
Q 027255           80 VLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld  117 (226)
                        +.+.+++++|+..+. ++..   +.+.+. .+..++.
T Consensus        75 --~~l~~~~~iis~~agi~~~~---l~~~l~-~~~~ivr  107 (152)
T d2ahra2          75 --KPLHFKQPIISMAAGISLQR---LATFVG-QDLPLLR  107 (152)
T ss_dssp             --TTSCCCSCEEECCTTCCHHH---HHHHHC-TTSCEEE
T ss_pred             --hhcccceeEecccccccHHH---HHhhhc-ccccchh
Confidence              345678889987654 5443   444443 2344443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.69  E-value=1.8e-16  Score=120.63  Aligned_cols=116  Identities=18%  Similarity=0.242  Sum_probs=93.3

Q ss_pred             Ce-EEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCCc--ccCCHHHHh-hhCCeEEEecCCHHHHHHHh
Q 027255            1 ME-VGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT--VGGSPAEVI-KKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~-IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~~--~~~s~~~~~-~~advvi~~~p~~~~~~~v~   74 (226)
                      || |+|||+|.||..||++|.++|+  +|++||++++..+.+.+.+..  ...+..+.. .++|+|++|+|. ..+.+++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl   79 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA   79 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh
Confidence            54 9999999999999999999996  789999999999999888753  345555443 479999999986 6677888


Q ss_pred             hcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe-cCCCCC
Q 027255           75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGS  123 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld-~pv~g~  123 (226)
                         +++.+.++++++++|++++.....+.+.+.+.++   |+- .|+.|+
T Consensus        80 ---~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~---~i~~hPm~G~  123 (171)
T d2g5ca2          80 ---KKLSYILSEDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGT  123 (171)
T ss_dssp             ---HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCC
T ss_pred             ---hhhhccccccccccccccccHHHHHHHHHhhccc---cccccccccc
Confidence               7788889999999999999888888888776553   432 255554

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.67  E-value=1.5e-17  Score=129.04  Aligned_cols=134  Identities=12%  Similarity=0.061  Sum_probs=106.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhhCCeEEEecCCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      ||+|||+|.||+++|..|+++||+|++|+|+++.++.+.+.+              +.++.+++++++++|+|++++|. 
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs-   87 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   87 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH-
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH-
Confidence            699999999999999999999999999999999999887542              45677899999999999999988 


Q ss_pred             HHHHHHhhcccccccc-----cCCCcEEEecCCC-CHHHHHHHHHHHHh----cCCcEEecCCCCChHhhccCcEEEEec
Q 027255           68 AAALSVVFDKGGVLEQ-----ICPGKGYIDMSTV-DHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQLVILSA  137 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~-----l~~g~ivvd~st~-~~~~~~~l~~~~~~----~g~~~ld~pv~g~~~~a~~g~~~~~~g  137 (226)
                      +.+++++   +.+.+.     +.++..++.++.+ .+.+.+.+.+.+.+    ..+.++.+|.+..+...+..+.+++++
T Consensus        88 ~~~~~~~---~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~viAs  164 (189)
T d1n1ea2          88 QFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIAS  164 (189)
T ss_dssp             HHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHH---HHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEEEEEe
Confidence            6788887   555432     3467778888764 45555555555544    346689999999888888888877776


Q ss_pred             cC
Q 027255          138 GE  139 (226)
Q Consensus       138 g~  139 (226)
                      -+
T Consensus       165 ~~  166 (189)
T d1n1ea2         165 AD  166 (189)
T ss_dssp             SS
T ss_pred             CC
Confidence            55

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.64  E-value=7.6e-16  Score=118.01  Aligned_cols=107  Identities=17%  Similarity=0.271  Sum_probs=88.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC---------------CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---------------ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g---------------~~~~~s~~~~~~~advvi~~~p   65 (226)
                      +||+|||+|.||.++|..|+++||+|++|+|++++.+.+.+.+               ...+.++.|+++++|+||+++|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~   81 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   81 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence            6899999999999999999999999999999999999887654               2336788999999999999998


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcC
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG  112 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g  112 (226)
                      . ..++.++   +++.+++.++++|+..++.... ...+.+.+...+
T Consensus        82 ~-~~~~~~~---~~i~~~l~~~~~iv~~~g~~~~-~~~~~~~~~~~~  123 (184)
T d1bg6a2          82 A-IHHASIA---ANIASYISEGQLIILNPGATGG-ALEFRKILRENG  123 (184)
T ss_dssp             G-GGHHHHH---HHHGGGCCTTCEEEESSCCSSH-HHHHHHHHHHTT
T ss_pred             h-hHHHHHH---HHhhhccCCCCEEEEeCCCCcc-HHHHHHHHHHhc
Confidence            7 5678888   8889999999988876654433 344556665554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.63  E-value=1.6e-16  Score=122.34  Aligned_cols=134  Identities=17%  Similarity=0.226  Sum_probs=98.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCC--chhHHHHHHCC-------------CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT--LSKCDELVAHG-------------ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~--~~~~~~l~~~g-------------~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+|.||+++|..|+++||+|++|.|.  ++.++.+...+             +....+..++++++|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            99999999999999999999999999999884  45566775542             2346778899999999999998


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCCC-HH-H-HHHHHHHHHh------cCCcEEecCCCCChHhhccCcEEEEe
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HE-T-SIKISRAITS------KGGHFLEAPVSGSKQPAETGQLVILS  136 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~-~-~~~l~~~~~~------~g~~~ld~pv~g~~~~a~~g~~~~~~  136 (226)
                      . ..+++++   +++.+.+++. .++.+++.. +. . ...+.+.+.+      ..+.++.+|-+..+...+..+..+++
T Consensus        81 s-~~~~~~~---~~l~~~l~~~-~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~via  155 (180)
T d1txga2          81 T-DGVLPVM---SRILPYLKDQ-YIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFS  155 (180)
T ss_dssp             G-GGHHHHH---HHHTTTCCSC-EEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred             h-hhhHHHH---Hhhccccccc-eecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEE
Confidence            7 7889998   7888888655 444444431 11 1 0112222322      13457899999988888888887777


Q ss_pred             ccC
Q 027255          137 AGE  139 (226)
Q Consensus       137 gg~  139 (226)
                      +.+
T Consensus       156 s~~  158 (180)
T d1txga2         156 SPS  158 (180)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            655

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.62  E-value=1.8e-15  Score=118.35  Aligned_cols=124  Identities=15%  Similarity=0.093  Sum_probs=94.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC--------------------CcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------------ATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g--------------------~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+|.+|.++|..|+++||+|++||.++++++.+.+..                    ....++..++++++|++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            9999999999999999999999999999999999988876432                    34577889999999999


Q ss_pred             EEecCCHH---------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--------CCcEEecCCCCC
Q 027255           61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--------GGHFLEAPVSGS  123 (226)
Q Consensus        61 i~~~p~~~---------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--------g~~~ld~pv~g~  123 (226)
                      ++|+|++.         .+..++..-..+.....++++||..||+.|.+++++...+.+.        .+.+.-+|-+=.
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~  160 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence            99999742         2333331002334455688999999999999998877655332        345677776543


Q ss_pred             h
Q 027255          124 K  124 (226)
Q Consensus       124 ~  124 (226)
                      +
T Consensus       161 ~  161 (202)
T d1mv8a2         161 E  161 (202)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.62  E-value=5.1e-16  Score=116.15  Aligned_cols=98  Identities=21%  Similarity=0.297  Sum_probs=78.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||+|||+|+||++|+++|.++| ++|++|||++++.+++.+. |+....+.++ +.++|+||+|++ |+.+++++   +
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~---~   75 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDMEAAC---K   75 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHHHHH---T
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHHHhH---H
Confidence            89999999999999999999887 8999999999999998875 7887777766 567999999996 57888888   5


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHH
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAI  108 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~  108 (226)
                      ++.   ..++++|++....+.  ..+.+.+
T Consensus        76 ~l~---~~~~~viS~~ag~~~--~~l~~~l  100 (152)
T d1yqga2          76 NIR---TNGALVLSVAAGLSV--GTLSRYL  100 (152)
T ss_dssp             TCC---CTTCEEEECCTTCCH--HHHHHHT
T ss_pred             HHh---hcccEEeecccCCCH--HHHHHHh
Confidence            554   357888887664332  3344444

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=4.9e-16  Score=113.81  Aligned_cols=83  Identities=25%  Similarity=0.402  Sum_probs=78.8

Q ss_pred             CCCCCcchhhcccccccccCcccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 027255          141 DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  220 (226)
Q Consensus       141 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~  220 (226)
                      ..+++.|++++.+.|++++++|.|+|+++++.||++++.+++++.|+|+|+++.+.++|+.+.+.|+|+.|+++++++|+
T Consensus        45 ~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~  124 (133)
T d1vpda1          45 RGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYE  124 (133)
T ss_dssp             TTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHH
T ss_pred             HhccccchhhhhccchhhhccCCCCchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhc
Q 027255          221 DLK  223 (226)
Q Consensus       221 ~~~  223 (226)
                      +..
T Consensus       125 ~~~  127 (133)
T d1vpda1         125 KLA  127 (133)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            753

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=4.7e-15  Score=108.29  Aligned_cols=83  Identities=17%  Similarity=0.221  Sum_probs=77.1

Q ss_pred             CCCCCcchhhccccc-ccccCcccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 027255          141 DLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV  219 (226)
Q Consensus       141 ~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~  219 (226)
                      +.+++.|++++.+.| .+..++|.++|+++++.||++++.+++++.|+|+|+++.+.++|+.+.+.|+|++|+++++++|
T Consensus        44 ~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~  123 (132)
T d2cvza1          44 NASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLL  123 (132)
T ss_dssp             TTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHH
T ss_pred             HhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            356677888888887 5899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhc
Q 027255          220 KDLK  223 (226)
Q Consensus       220 ~~~~  223 (226)
                      ++..
T Consensus       124 e~~~  127 (132)
T d2cvza1         124 ERWG  127 (132)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9864

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.51  E-value=9.5e-16  Score=122.42  Aligned_cols=131  Identities=10%  Similarity=0.036  Sum_probs=104.6

Q ss_pred             EEEEecCh--hHHHHHH------HHHhCCCeEEEEcCCchhH-HHHHHC-------------------------------
Q 027255            3 VGFLGLGI--MGKAISM------NLLRNGFKVTVWNRTLSKC-DELVAH-------------------------------   42 (226)
Q Consensus         3 IgvIG~G~--mG~~~A~------~l~~~G~~V~~~dr~~~~~-~~l~~~-------------------------------   42 (226)
                      +.++|.|.  ||..++.      ++++.|+.|++.|.++++. +.+.+.                               
T Consensus        43 ~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~  122 (242)
T d2b0ja2          43 SITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLV  122 (242)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESS
T ss_pred             eeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcC
Confidence            44566775  7777777      6889999999999997764 333211                               


Q ss_pred             -----CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           43 -----GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        43 -----g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                           |+++++|+.|+++++|+||+|+|+++.+++++   +++.+.++++++|+|+||+.+....++.+.+.++++.|++
T Consensus       123 ~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi---~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~  199 (242)
T d2b0ja2         123 HPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITS  199 (242)
T ss_dssp             CGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             CHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH---HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEEC
Confidence                 35667999999999999999999988899999   8899999999999999999999999999999999999998


Q ss_pred             cCCCCChHhhccCcEEEEec
Q 027255          118 APVSGSKQPAETGQLVILSA  137 (226)
Q Consensus       118 ~pv~g~~~~a~~g~~~~~~g  137 (226)
                      .+.+++|. ...+.++++.+
T Consensus       200 ~hp~a~pe-~~g~~li~~~~  218 (242)
T d2b0ja2         200 YHPGCVPE-MKGQVYIAEGY  218 (242)
T ss_dssp             CBCSSCTT-TCCCEEEEESS
T ss_pred             CCccCcCc-cccceEEecCC
Confidence            86666543 34444444433

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.51  E-value=2e-14  Score=105.16  Aligned_cols=81  Identities=20%  Similarity=0.222  Sum_probs=72.9

Q ss_pred             CCCCcchhhcccc-------cccccCcccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHH
Q 027255          142 LGGIANPMFKGKG-------PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSA  214 (226)
Q Consensus       142 ~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~  214 (226)
                      .+++.|++++.+.       ..+..++|.++|+++++.||++++++++++.|+|+|+++.+.++|+.+.+.|+|++|+++
T Consensus        46 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~  125 (134)
T d3cuma1          46 RSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSV  125 (134)
T ss_dssp             TSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGG
T ss_pred             hcccchhhhhhhhhhhhccchhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHH
Confidence            4566777776554       347888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 027255          215 VFEVVKDL  222 (226)
Q Consensus       215 ~~~~~~~~  222 (226)
                      ++++|++-
T Consensus       126 i~~~~e~~  133 (134)
T d3cuma1         126 VQKLFDPT  133 (134)
T ss_dssp             GHHHHCTT
T ss_pred             HHHHHcCC
Confidence            99999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=7.8e-14  Score=104.87  Aligned_cols=92  Identities=13%  Similarity=0.185  Sum_probs=74.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC-------cccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-------TVGGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~-------~~~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      |||+|||+|.||+.+|..|++.||+|++|+|++++.+.+...+.       ....+..+....+|+||++++. .+++++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            99999999999999999999999999999999887654433221       2334556777899999999987 678888


Q ss_pred             hhcccccccccCCCcEEEecCCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +   +.+.+.+.++++|+.+.+.
T Consensus        80 ~---~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V---KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H---HHHHTTSCTTSCEEEECSS
T ss_pred             H---HhhccccCcccEEeeccCc
Confidence            7   7777888888888887664

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.3e-12  Score=99.59  Aligned_cols=94  Identities=13%  Similarity=0.168  Sum_probs=75.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------CC------------------CcccCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG------------------ATVGGSPA   51 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g------------------~~~~~s~~   51 (226)
                      .||+|||+|.||+.||..++.+||+|++||++++..+...+           .+                  +..+.+..
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            38999999999999999999999999999999986554321           12                  33567888


Q ss_pred             HHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           52 EVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        52 ~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +++.++|+|+.|+|.+-.++.-++  .++.+.++++.++...|+.
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~  127 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSS  127 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSS
T ss_pred             hhhcccceehhhcccchhHHHHHH--HHHhhhcccCceeeccCcc
Confidence            899999999999999888776665  5677778788887765554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.35  E-value=1e-12  Score=101.42  Aligned_cols=123  Identities=10%  Similarity=0.094  Sum_probs=100.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+...|.+|.+||+...........+.....+++++++.||+|++++|-.+..+.++.  ...
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~--~~~  125 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN--KAT  125 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HHH
T ss_pred             cceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheec--HHH
Confidence            479999999999999999999999999999987765555555666778999999999999999998887777773  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      +..++++.++|+++....-....+.+.+.+..+...---|+-.+|
T Consensus       126 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~EP  170 (191)
T d1gdha1         126 IKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP  170 (191)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             hhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCCC
Confidence            788999999999999888888889999988765432222444443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.33  E-value=1.5e-12  Score=99.64  Aligned_cols=106  Identities=16%  Similarity=0.175  Sum_probs=89.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+...|.+|++|||++..      .......++++++++||+|++++|..+..+.++.  ...
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~--~~~  114 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNKHTRGLVK--YQH  114 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhcccccccccccccc--cce
Confidence            47999999999999999999999999999998753      2334567899999999999999998888777773  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      +..++++.++|+++....-....+.+.+.+..+.
T Consensus       115 l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~  148 (181)
T d1qp8a1         115 LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF  148 (181)
T ss_dssp             HTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred             eeeccccceEEeccccccccchhhhhhcccCcEE
Confidence            7889999999999998777788888888886554

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.32  E-value=1.5e-12  Score=100.62  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=92.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+..-|.+|..||+..... .....+.....+++++++.||+|++++|-....+.++.  ...
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~--~~~  126 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN--DFT  126 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS--HHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeecccccchhhhh--HHH
Confidence            479999999999999999999999999999876542 23344777788999999999999999998777766652  345


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      +..++++.++|+++....-....+.+.+.+..+.
T Consensus       127 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1         127 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             HhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            6789999999999998877888888888876543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.31  E-value=3.2e-12  Score=98.87  Aligned_cols=106  Identities=17%  Similarity=0.152  Sum_probs=80.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC------------------CCcccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH------------------GATVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~------------------g~~~~~s~~~~~~~advvi~   62 (226)
                      |||+|||+|.+|.++|..|+ .||+|++||.++++++.+...                  ......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            99999999999999998775 699999999999999887642                  12334566677789999999


Q ss_pred             ecCCHH----------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255           63 MLADPA----------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK  111 (226)
Q Consensus        63 ~~p~~~----------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~  111 (226)
                      |+|++.          .+....   ..+. ...++.+++-.||+.|.+.+++.+.+.+.
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~---~~~~-~~~~~~~iii~Stv~pgt~~~~~~~~~~~  134 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVI---KEVL-SVNSHATLIIKSTIPIGFITEMRQKFQTD  134 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH---HHHH-HHCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             cCCccccccCCCcceeEEeehh---hhhh-hcccceeEEeeeecCceeeeeeeeccchh
Confidence            999753          122222   2222 23578899999999999999887766543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.29  E-value=2.7e-12  Score=98.83  Aligned_cols=116  Identities=13%  Similarity=0.046  Sum_probs=98.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.|...|.+|..||+...........+.....++.++++++|+|++++|-.+..+.++.  ...
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~--~~~  122 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN--DET  122 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBS--HHH
T ss_pred             cceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhH--HHH
Confidence            479999999999999999999999999999987666666666788889999999999999999998887777763  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc--EEec
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH--FLEA  118 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~--~ld~  118 (226)
                      ++.+++|.++|+++....-....+.+.+.+..+.  .+|.
T Consensus       123 l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV  162 (188)
T d2naca1         123 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDV  162 (188)
T ss_dssp             HTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESC
T ss_pred             HHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeC
Confidence            7889999999999998877788888888876544  4553

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.26  E-value=8.3e-12  Score=96.66  Aligned_cols=109  Identities=16%  Similarity=0.130  Sum_probs=89.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.|..-|.+|++||+.......  ..+. ...+++++++++|+|++++|.....+.++.  ...
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~--~~~  118 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KKGY-YVDSLDDLYKQADVISLHVPDVPANVHMIN--DES  118 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBS--HHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCcccccccc--ccee-eeccccccccccccccccCCcccccccccc--HHH
Confidence            47999999999999999999999999999987654322  2343 456899999999999999998777777662  345


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      +..++++.++|+++....-....+.+.+.+.-+.
T Consensus       119 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  152 (197)
T d1j4aa1         119 IAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF  152 (197)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             HhhhCCccEEEecCchhhhhhHHHHHHHhcccch
Confidence            6788999999999998777788888888876554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.24  E-value=1.9e-11  Score=92.16  Aligned_cols=114  Identities=21%  Similarity=0.195  Sum_probs=84.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC---------cccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---------TVGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~---------~~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      ++|.|||+|.||+.+|++|.++||+|++||||.++++.+.+..-         .......+.+...|+++.++|......
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~   82 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHAT   82 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhhH
Confidence            47999999999999999999999999999999999999987521         112234456678899999998754433


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG  122 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g  122 (226)
                      ...       .....+..++|.+...+ ....+.+.....+..+++.....
T Consensus        83 ~~~-------~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~  125 (182)
T d1e5qa1          83 VIK-------SAIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMNEIGYS  125 (182)
T ss_dssp             HHH-------HHHHHTCEEECSSCCCH-HHHHTHHHHHHTTCEEECSCBCC
T ss_pred             HHH-------HHHhhccceeecccCcH-HHHHHHHHhccccceeehhhhcc
Confidence            222       33446778888877655 45677777777777776654433

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.21  E-value=1.2e-11  Score=95.07  Aligned_cols=95  Identities=14%  Similarity=0.136  Sum_probs=72.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----------C-------------CcccCCHHHHhhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----------G-------------ATVGGSPAEVIKK   56 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----------g-------------~~~~~s~~~~~~~   56 (226)
                      .||+|||+|.||+.||..++.+|++|++||++++..++..+.           +             +..+.+. +.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence            379999999999999999999999999999999876653221           1             2233333 34678


Q ss_pred             CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCH
Q 027255           57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~   98 (226)
                      +|+|+.++|.+-.++.-+|  .++.+.+++++++...|+.-+
T Consensus        84 adlViEav~E~l~~K~~lf--~~l~~~~~~~~IiaSnTS~l~  123 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTIS  123 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSC
T ss_pred             cceeeeeecchHHHHHHHH--HHHHhhcCCCeeEEecccccc
Confidence            9999999999888776665  567778888888877665443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.20  E-value=1.7e-11  Score=95.04  Aligned_cols=119  Identities=14%  Similarity=0.091  Sum_probs=93.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.|..-|.+|++||+.+....    .......+++++++.||+|++++|.....+.++.  ...
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~--~~~  119 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD----HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIIN--EAA  119 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC----CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBC--HHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhh----hcchhHHHHHHHHHhcccceeeeccccccccccc--HHH
Confidence            4799999999999999999999999999999765421    1122346899999999999999998888777663  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ  125 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~  125 (226)
                      +..++++.++|+++....-....+.+.+.+.-+...---|+-.++
T Consensus       120 l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP  164 (199)
T d1dxya1         120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET  164 (199)
T ss_dssp             HHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred             hhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCCC
Confidence            688999999999999887788888888887655443333554444

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=3.1e-11  Score=92.48  Aligned_cols=110  Identities=16%  Similarity=0.201  Sum_probs=91.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+..-|.+|.+||+....... ...++. ..+.+|++++||+|++++|-.+..+.++.  ...
T Consensus        45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-~~~~~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin--~~~  120 (184)
T d1ygya1          45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARA-AQLGIE-LLSLDDLLARADFISVHLPKTPETAGLID--KEA  120 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHH-HHHTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBC--HHH
T ss_pred             eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHH-hhcCce-eccHHHHHhhCCEEEEcCCCCchhhhhhh--HHH
Confidence            47999999999999999999999999999998765433 333444 45899999999999999998888877762  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      +..++++.++|+++....-..+.+.+.+.+..+.
T Consensus       121 l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~  154 (184)
T d1ygya1         121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVR  154 (184)
T ss_dssp             HTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEE
T ss_pred             HhhhCCCceEEEecchhhhhhHHHHHHHhcCcEe
Confidence            7889999999999998877788899999877554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2.3e-11  Score=93.48  Aligned_cols=108  Identities=14%  Similarity=0.137  Sum_probs=89.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++|||||+|.+|+.+|+.+...|.+|+.||+.....    ........+++++++.+|+|++++|-.+..+.++.  .+.
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~----~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~--~~~  118 (188)
T d1sc6a1          45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG--AKE  118 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC--HHH
T ss_pred             eEEEEeecccchhhhhhhcccccceEeeccccccch----hhhhhhhhhHHHHHhhccceeecccCCcchhhhcc--HHH
Confidence            479999999999999999999999999999875432    12334557899999999999999998777777663  356


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ++.++++.++|+++....-....+.+.+.+..+.
T Consensus       119 l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~  152 (188)
T d1sc6a1         119 ISLMKPGSLLINASRGTVVDIPALADALASKHLA  152 (188)
T ss_dssp             HHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred             HhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCce
Confidence            7889999999999998888888899988876543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=3.9e-10  Score=84.41  Aligned_cols=108  Identities=13%  Similarity=0.176  Sum_probs=83.8

Q ss_pred             CeEEEEecChhHHH-HHHHHHhC-CCeE-EEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRN-GFKV-TVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~-G~~V-~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      |||||||+|.||.. ....+... ++++ .+||+++++.+.+.+. ++...++.+++.++.|+|++|+|+..+.+.+.  
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~--   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS--   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcccccc--
Confidence            68999999999986 45666554 5665 4789999998887654 88888999999999999999999987776665  


Q ss_pred             ccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcE
Q 027255           77 KGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        77 ~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~  115 (226)
                           ..++.|+ ++++-- +.++.+.+++.+.+++.|..+
T Consensus        80 -----~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~  115 (164)
T d1tlta1          80 -----TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  115 (164)
T ss_dssp             -----HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             -----ccccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence                 3344564 455542 457899999999988887664

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=2.4e-09  Score=81.38  Aligned_cols=111  Identities=14%  Similarity=0.228  Sum_probs=85.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHC-C----CcccCCHHHHhh--hCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-G----ATVGGSPAEVIK--KCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g----~~~~~s~~~~~~--~advvi~~~p~~~~~~   71 (226)
                      +||||||+|.||+..++.+... +++|. ++|+++++.+.+.+. +    ....++.+++++  +.|+|++++|+..+.+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            5899999999999999999875 56766 789999998887654 3    356789999985  4789999999987776


Q ss_pred             HHhhcccccccccCCCcEE-EecC-CCCHHHHHHHHHHHHhcCCcEEec
Q 027255           72 SVVFDKGGVLEQICPGKGY-IDMS-TVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~iv-vd~s-t~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+.       ..++.|..| ++-. +.++...+++.+.+++++..+.-+
T Consensus        82 ~~~-------~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~  123 (184)
T d1ydwa1          82 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDG  123 (184)
T ss_dssp             HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred             hhh-------hhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEE
Confidence            655       445566654 5433 358899999999998888765433

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.99  E-value=2.9e-10  Score=84.89  Aligned_cols=68  Identities=26%  Similarity=0.381  Sum_probs=57.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhhCCeEEEecCCHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPA   68 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~~--~~~s~~~~~~~advvi~~~p~~~   68 (226)
                      .+|.|||+|.||..++++|...|. ++++|+|+.++++.+... |..  ...+..+.+.++|+||.|++.+.
T Consensus        25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~   96 (159)
T d1gpja2          25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH   96 (159)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCC
Confidence            379999999999999999999997 699999999999888765 543  34577788889999999997643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.96  E-value=2e-09  Score=77.53  Aligned_cols=107  Identities=14%  Similarity=0.192  Sum_probs=72.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHH-hhhCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEV-IKKCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~-~~~advvi~~~p~~~~~~~   72 (226)
                      +++.|+|+|.+|+.+|+.|.+.|++|+++|.++++++++...+..+       ...+.++ ++++|.++++++++.....
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            4788999999999999999999999999999999999998876432       1223343 5789999999987655443


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      ++   ..+........+++-..+  +..    .+.+...|+.++
T Consensus        81 ~~---~~~~~~~~~~~iiar~~~--~~~----~~~l~~~Gad~v  115 (134)
T d2hmva1          81 LT---TLLLKELDIPNIWVKAQN--YYH----HKVLEKIGADRI  115 (134)
T ss_dssp             HH---HHHHHHTTCSEEEEECCS--HHH----HHHHHHHTCSEE
T ss_pred             HH---HHHHHHcCCCcEEeeccc--HhH----HHHHHHCCCCEE
Confidence            33   222333434444443332  332    334455677554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.95  E-value=2.1e-09  Score=80.53  Aligned_cols=108  Identities=9%  Similarity=0.114  Sum_probs=81.0

Q ss_pred             CeEEEEecChhHHH-HHHHHHhC-CCeEEEEcCCchhHHHHHHC-CC-cccCCHHHHhh-hCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK-KCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~-G~~V~~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~   75 (226)
                      |||||||+|.||.. ....+.+. +.++.++|+++++.+.+.+. +. ....+.+++++ +.|+|++|+|+..+.+.+. 
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~-   80 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA-   80 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccccccc-
Confidence            69999999999976 45566555 46888999999999888764 54 35677888775 5799999999987776665 


Q ss_pred             cccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcE
Q 027255           76 DKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        76 ~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~  115 (226)
                            ..++.|. ++++-- +.+....+++.+.+.+++..+
T Consensus        81 ------~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          81 ------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             ------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ------cccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence                  3344554 555543 357888999999988877653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.90  E-value=1.7e-09  Score=81.80  Aligned_cols=67  Identities=24%  Similarity=0.383  Sum_probs=51.1

Q ss_pred             CeEEEE-ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC-------CcccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-------ATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvI-G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+|| |+|.||++||+.|+++||+|.+|+|++++++.+.+..       .....+........+......+..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWE   75 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeee
Confidence            999999 8999999999999999999999999999988876541       222333444455566666666443

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.89  E-value=4.7e-09  Score=78.19  Aligned_cols=91  Identities=21%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+|||.|+-|++.|.||...|.+|++--|..++ .+...+.|..+ -+++|+++.+|+|++.+|+ +.-.+++.  +.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD-~~q~~vy~--~~   92 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPD-EFQGRLYK--EE   92 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCH-HHHHHHHH--HH
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecch-HHHHHHHH--Hh
Confidence            47999999999999999999999999998876554 45566678776 5799999999999999997 44555661  36


Q ss_pred             cccccCCCcEEEecCC
Q 027255           80 VLEQICPGKGYIDMST   95 (226)
Q Consensus        80 l~~~l~~g~ivvd~st   95 (226)
                      +.+.+++|+.+.-.-.
T Consensus        93 I~p~lk~g~~L~FaHG  108 (182)
T d1np3a2          93 IEPNLKKGATLAFAHG  108 (182)
T ss_dssp             TGGGCCTTCEEEESCC
T ss_pred             hhhhcCCCcEEEEecc
Confidence            8899999998876543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.86  E-value=2.1e-08  Score=71.96  Aligned_cols=106  Identities=15%  Similarity=0.207  Sum_probs=72.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcc----cCCHHHH----hhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV----GGSPAEV----IKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~----~~s~~~~----~~~advvi~~~p~~~~~~   71 (226)
                      |+|.|+|+|.+|+.+|+.|.+.|++|.+.|.++++++++.+. +..+    ..+++-+    ++++|.++.++++++.-.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~   80 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL   80 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHH
Confidence            899999999999999999999999999999999999998765 5443    1222222    457899999988864322


Q ss_pred             HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      .+.    .+...+.+..+++-.....  .    .+.+.+.|+.++
T Consensus        81 ~~~----~~~k~~~~~~iI~~~~~~~--~----~~~l~~~G~d~v  115 (132)
T d1lssa_          81 MSS----LLAKSYGINKTIARISEIE--Y----KDVFERLGVDVV  115 (132)
T ss_dssp             HHH----HHHHHTTCCCEEEECSSTT--H----HHHHHHTTCSEE
T ss_pred             HHH----HHHHHcCCceEEEEecCHH--H----HHHHHHCCCCEE
Confidence            221    2334455666665444332  2    334556677543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.85  E-value=2.3e-09  Score=80.73  Aligned_cols=104  Identities=9%  Similarity=0.110  Sum_probs=76.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      +||||||+|.||+.+++.+.+. ++++. +++++++...   ..+.....+..++.++.|+|++|+|+..+.+.+.    
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~----   76 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIPEQA----   76 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH----
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccHHHHH----
Confidence            4799999999999999999875 56644 7788876532   2344556677777788999999999977665554    


Q ss_pred             ccccccCCCcEEEecCC---CCHHHHHHHHHHHHhcCCc
Q 027255           79 GVLEQICPGKGYIDMST---VDHETSIKISRAITSKGGH  114 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st---~~~~~~~~l~~~~~~~g~~  114 (226)
                         +.+..|+.+|.+..   ..++..+++.+..++.|..
T Consensus        77 ---~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~  112 (170)
T d1f06a1          77 ---PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNV  112 (170)
T ss_dssp             ---HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             ---HHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCce
Confidence               56778988886544   3466677777777666654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=2.1e-08  Score=75.91  Aligned_cols=107  Identities=21%  Similarity=0.203  Sum_probs=79.7

Q ss_pred             CeEEEEecChhHHH-HHHHHHhCC--CeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhhh--CCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRNG--FKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~G--~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~~--advvi~~~p~~~~~~~   72 (226)
                      +||||||+|.||+. ....+.+..  +++. ++|+++++.+.+.+. +. ..+.+.++++++  .|+|++|+|+..+.+.
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~   83 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF   83 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccccc
Confidence            37999999999987 467776643  4655 789999999887664 54 467899999874  7889999998776655


Q ss_pred             HhhcccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCc
Q 027255           73 VVFDKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~  114 (226)
                      +.       ..++.|+ ++++-- +.+..+.+++.+..++.+..
T Consensus        84 ~~-------~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          84 IE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             HH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             cc-------cccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            54       3344565 455543 35788999999998887765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.2e-08  Score=74.26  Aligned_cols=89  Identities=17%  Similarity=0.108  Sum_probs=71.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      ++++|+|.|.+|+.+|+.+...|.+|.+|+++|-+.-+..-.|..+. +.++++..+|+|++++.+...+.      .+-
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~vI~------~eh   97 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDIIL------GRH   97 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCSBC------HHH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCccchh------HHH
Confidence            47999999999999999999999999999999977655555576654 78999999999999987633221      123


Q ss_pred             ccccCCCcEEEecCCC
Q 027255           81 LEQICPGKGYIDMSTV   96 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~   96 (226)
                      ++.+++|.++.+.+..
T Consensus        98 ~~~MKdgaIL~N~Ghf  113 (163)
T d1li4a1          98 FEQMKDDAIVCNIGHF  113 (163)
T ss_dssp             HTTCCTTEEEEECSSS
T ss_pred             HHhccCCeEEEEeccc
Confidence            4678899999998764

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.70  E-value=2.9e-08  Score=77.62  Aligned_cols=107  Identities=13%  Similarity=0.121  Sum_probs=79.6

Q ss_pred             eEEEEecChhHHH-HHHHHHhC-CCeEE-EEcCCchhHHHHHHC-CCc-----ccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GAT-----VGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~-~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~~-----~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      ||||||+|.||+. +...+... +++|. ++|+++++++.+.+. |+.     ...|.+++++  +.|+|++++|+..+.
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~  114 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHA  114 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhhh
Confidence            7999999999974 55666554 56755 889999999887664 542     4678899886  478999999997777


Q ss_pred             HHHhhcccccccccCCCcE-EEecC-CCCHHHHHHHHHHHHhcCCcE
Q 027255           71 LSVVFDKGGVLEQICPGKG-YIDMS-TVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~i-vvd~s-t~~~~~~~~l~~~~~~~g~~~  115 (226)
                      +.++       ..+..|+. +++-- +.+++...++.+..+++++.+
T Consensus       115 ~~~~-------~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~  154 (221)
T d1h6da1         115 EFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL  154 (221)
T ss_dssp             HHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             hHHH-------HhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence            6655       34455654 44432 458899999999988877764

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.69  E-value=2.9e-08  Score=76.39  Aligned_cols=89  Identities=20%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             eEEEEecChhHHHHHHHHHhC------CCeEEEEcCCc-hhHHHHHHCCCcc----cCCHHHHhhhCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRN------GFKVTVWNRTL-SKCDELVAHGATV----GGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~------G~~V~~~dr~~-~~~~~l~~~g~~~----~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      ||+|||.|+-|++.|.||...      |..|.+--|.. ...++..+.|..+    +.+.+|+++.+|+|++.+|+ +.-
T Consensus        46 kIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPD-e~Q  124 (226)
T d1qmga2          46 QIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISD-SAQ  124 (226)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCH-HHH
T ss_pred             EEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecch-HHH
Confidence            799999999999999999995      45676654433 4556677778763    45789999999999999998 555


Q ss_pred             HHHhhcccccccccCCCcEEEecC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      .+++   +++.+.+++|+.+.-.-
T Consensus       125 ~~vy---~~I~p~Lk~G~~L~FaH  145 (226)
T d1qmga2         125 ADNY---EKVFSHMKPNSILGLSH  145 (226)
T ss_dssp             HHHH---HHHHHHSCTTCEEEESS
T ss_pred             HHHH---HHHHHhcCCCceeeecc
Confidence            5677   56889999999887643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.59  E-value=8e-08  Score=70.25  Aligned_cols=65  Identities=11%  Similarity=0.155  Sum_probs=49.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHH----H----C--CCcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELV----A----H--GATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~----~----~--g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.+|..+|..|+.+|  .+|.++|+++++.+...    .    .  ......+.+ .+++||+|+++...
T Consensus         6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~   82 (146)
T d1ez4a1           6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA   82 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence            69999999999999999999887  58999999988754322    1    1  122334444 46899999998643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.51  E-value=8.3e-08  Score=73.84  Aligned_cols=108  Identities=15%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|+|.|+|++|..+|+.|.+.|.+|+++|.+++++......|..... .++++ ..||+++-|-......++.+     
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~~~a-----  101 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCAMGGVITTEVA-----  101 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECSCSCCBCHHHH-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccC-ccccccccceeeecccccccccHHHH-----
Confidence            479999999999999999999999999999999999988888877664 44554 47999887754322222333     


Q ss_pred             cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                        +.+ +-++|+.... .|.+.+...+.+.++|+.|+.-
T Consensus       102 --~~i-~ak~i~e~AN-~p~~~~~~~~~L~~rgI~~iPD  136 (201)
T d1c1da1         102 --RTL-DCSVVAGAAN-NVIADEAASDILHARGILYAPD  136 (201)
T ss_dssp             --HHC-CCSEECCSCT-TCBCSHHHHHHHHHTTCEECCH
T ss_pred             --hhh-hhheeeccCC-CCcchhhHHHHhcccceEEEeh
Confidence              223 2345655544 3333344567888999988543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.48  E-value=2.3e-07  Score=68.30  Aligned_cols=90  Identities=17%  Similarity=0.079  Sum_probs=73.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      +++.|+|.|..|+.+|+++...|.+|++++++|-++-+..-.|.++ .+.+++++.+|++|+++.....+.      .+-
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~------~~h   96 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIK------LEH   96 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBC------HHH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCcccc------HHH
Confidence            3789999999999999999999999999999997655555557766 679999999999999998754221      123


Q ss_pred             ccccCCCcEEEecCCCC
Q 027255           81 LEQICPGKGYIDMSTVD   97 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~   97 (226)
                      +..++.|.++.+.+...
T Consensus        97 ~~~MKdgaIl~N~GHfd  113 (163)
T d1v8ba1          97 LLKMKNNAVVGNIGHFD  113 (163)
T ss_dssp             HTTCCTTCEEEECSSTT
T ss_pred             HHHhhCCeEEEeccccc
Confidence            46788999999988754

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=1.8e-07  Score=67.86  Aligned_cols=64  Identities=19%  Similarity=0.308  Sum_probs=49.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHC---------CCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~---------g~~~~~s~~~~~~~advvi~~~   64 (226)
                      |||+|||+|.+|..+|..|+.++  .++.++|+++++++.....         ......+..+.++++|+|+++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEec
Confidence            89999999999999999998877  4799999998876542211         2233344456689999999986

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.46  E-value=2.5e-07  Score=67.16  Aligned_cols=64  Identities=14%  Similarity=0.169  Sum_probs=49.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHH---C-------CCcc-cCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVA---H-------GATV-GGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~---~-------g~~~-~~s~~~~~~~advvi~~~   64 (226)
                      |||+|||+|.+|..+|..|+..|  .++.++|+++++.+....   .       ...+ .++..+.++++|+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEE
Confidence            89999999999999999999987  489999999887543221   1       1222 234556789999999985

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.42  E-value=3.1e-07  Score=69.00  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=68.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC-----------------------------CHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-----------------------------SPAE   52 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-----------------------------s~~~   52 (226)
                      +|.|||.|..|..-++.....|..|+++|.++++.+++.+.+.....                             .+.+
T Consensus        31 ~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~  110 (183)
T d1l7da1          31 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLK  110 (183)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999887643321                             1223


Q ss_pred             HhhhCCeEEEecCCHHH-HHHHhhcccccccccCCCcEEEecCC
Q 027255           53 VIKKCTITIGMLADPAA-ALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        53 ~~~~advvi~~~p~~~~-~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      .+.++|+||.++--+-. ...++  .+...+.+++|.+|||.+.
T Consensus       111 ~l~~aDlVI~talipG~~aP~li--t~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         111 ELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCS--CHHHHTTSCTTCEEEETTG
T ss_pred             HHHhhhhheeeeecCCcccceee--hHHHHHhcCCCcEEEEEee
Confidence            46789999987632211 11112  1345578999999999874

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=4.8e-07  Score=67.54  Aligned_cols=112  Identities=21%  Similarity=0.197  Sum_probs=75.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCcccCCHHH-HhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAE-VIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~~-~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|+|+|..+++++..|.+.|.+|+++||++++.+.+.+.    +.....+..+ ....+|+||.|+|-.-. .+.. 
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~-~~~~-   96 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDIP-   96 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCCC-
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc-cCCC-
Confidence            478999999999999999999999999999999999887764    2111122222 23568999999987532 1111 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEec
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEA  118 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~  118 (226)
                        .--...+.++.+++|+.-....+  .+.+.++++|+. .+|+
T Consensus        97 --~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~i~G  136 (170)
T d1nyta1          97 --AIPSSLIHPGIYCYDMFYQKGKT--PFLAWCEQRGSKRNADG  136 (170)
T ss_dssp             --CCCGGGCCTTCEEEESCCCSSCC--HHHHHHHHTTCCEEECT
T ss_pred             --CCcHHHhccCcEEEEeecCCCCC--HHHHHHHHcCCCcccCC
Confidence              11123467889999987543222  244556677764 4544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.40  E-value=1.2e-07  Score=70.42  Aligned_cols=92  Identities=18%  Similarity=0.284  Sum_probs=69.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC---Ccc----cCCHHHHhhhCCeEEEecCCHH-HHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---ATV----GGSPAEVIKKCTITIGMLADPA-AALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g---~~~----~~s~~~~~~~advvi~~~p~~~-~~~~v   73 (226)
                      ||.|||.|..|..-++...+.|.+|+++|.++++.+++....   +..    ...+++.++++|+||.++--+- ....+
T Consensus        34 ~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~l  113 (168)
T d1pjca1          34 KVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPIL  113 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCC
T ss_pred             EEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccCee
Confidence            789999999999999999999999999999999998887652   222    1235677889999999874221 11122


Q ss_pred             hhcccccccccCCCcEEEecCC
Q 027255           74 VFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      +.  ++....+++|.+|||.+.
T Consensus       114 It--~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         114 VP--ASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             BC--HHHHTTSCTTCEEEETTC
T ss_pred             ec--HHHHhhcCCCcEEEEeec
Confidence            21  345578999999999985

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.40  E-value=3.4e-07  Score=66.97  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=62.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHH----H------CCCcccCCHHHHhhhCCeEEEecCCH-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----A------HGATVGGSPAEVIKKCTITIGMLADP-   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~----~------~g~~~~~s~~~~~~~advvi~~~p~~-   67 (226)
                      .||+|||+|.+|..+|..|+.+|.  ++.++|+++++++...    .      ..........+.+++||+|+++...+ 
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~~~   86 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQ   86 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccccc
Confidence            379999999999999999998875  7999999988744321    1      12334444557788999999976431 


Q ss_pred             --------------HHHHHHhhcccccccccCCCcEEEecCC
Q 027255           68 --------------AAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        68 --------------~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                                    ..++++.   +.+.++. |..+++..|.
T Consensus        87 ~~~~~R~dl~~~N~~i~~~i~---~~i~~~~-p~a~~ivvtN  124 (148)
T d1ldna1          87 KPGETRLDLVDKNIAIFRSIV---ESVMASG-FQGLFLVATN  124 (148)
T ss_dssp             CTTTCSGGGHHHHHHHHHHHH---HHHHHHT-CCSEEEECSS
T ss_pred             ccCcchhHHHHHHHHHHHHHH---HHHHhhC-CCceEEEecC
Confidence                          2344444   4555555 5556665543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.39  E-value=5.6e-07  Score=66.20  Aligned_cols=65  Identities=11%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------C----CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------G----ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g----~~~~~s~~~~~~~advvi~~~p   65 (226)
                      +||+|||+|..|..+|..|...++ ++.++|+++++++.....        +    .....+.+++++++|+|+++..
T Consensus         8 ~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           8 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            489999999999999998888775 899999998875543211        1    2224566788899999999873

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.38  E-value=9.3e-07  Score=65.17  Aligned_cols=90  Identities=17%  Similarity=0.220  Sum_probs=61.2

Q ss_pred             CeEEEEecChhHHH-HHHHHHhCC-CeEE-EEcCCchh--HHHHHHCCCcccCC-HHHHh-----hhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKA-ISMNLLRNG-FKVT-VWNRTLSK--CDELVAHGATVGGS-PAEVI-----KKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~-~A~~l~~~G-~~V~-~~dr~~~~--~~~l~~~g~~~~~s-~~~~~-----~~advvi~~~p~~~~   69 (226)
                      +||||||+|.+|+. +.+.|.... .++. +.+|+++.  .....+.|+....+ .+++.     .+.|+||.++|...+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            47999999999986 556665443 4554 56888653  23345567766544 44443     357899999998777


Q ss_pred             HHHHhhcccccccccCCCcEEEecCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      .+...     ....++.|.++||.|+
T Consensus        85 ~~~~~-----~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQNEA-----LLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHH-----HHHHHCTTCEEEECST
T ss_pred             HHhHH-----HHHHHHcCCEEEEccc
Confidence            66543     2245678999999987

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.37  E-value=1.7e-07  Score=69.89  Aligned_cols=111  Identities=18%  Similarity=0.170  Sum_probs=74.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHH--HHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPA--AALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~--~~~~v~~~   76 (226)
                      ++|.|||+|.++++++..|.+.|. +|++++|++++.+.+.+. +.....+..  ..++|+||-|+|-.-  ...+.-  
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiGm~~~~~~~~--   93 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD--   93 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS--
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccCCcccccccc--
Confidence            369999999999999999999996 799999999999988764 443333222  246899999998421  000000  


Q ss_pred             cccc-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           77 KGGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        77 ~~~l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                       -.+ ...++++.+++|..-.... +. +.+.++++|+..+++
T Consensus        94 -l~~~~~~~~~~~~v~D~vY~P~~-T~-ll~~A~~~G~~~i~G  133 (167)
T d1npya1          94 -LAFPKAFIDNASVAFDVVAMPVE-TP-FIRYAQARGKQTISG  133 (167)
T ss_dssp             -CSSCHHHHHHCSEEEECCCSSSS-CH-HHHHHHHTTCEEECH
T ss_pred             -ccccHhhcCCcceEEEEeeccCC-CH-HHHHHHHCCCeEEEC
Confidence             001 1224567899998654322 22 456667788887665

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.35  E-value=3.4e-07  Score=75.32  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=71.6

Q ss_pred             eEEEEecChhHHHHHHHHHhC-C-CeEEEEcCCchhHHHHHH----CCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVA----HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~-G-~~V~~~dr~~~~~~~l~~----~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      +++|||+|.++...++.|... . .+|.+|+|++++.+.+.+    .+..++.++++++.+||+|++|+|+.+   .++.
T Consensus       127 ~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~---P~~~  203 (320)
T d1omoa_         127 VFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK---PVVK  203 (320)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS---CCBC
T ss_pred             EEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc---cccc
Confidence            689999999999999988753 2 479999999999877654    477788889999999999999998643   2331


Q ss_pred             cccccccccCCCcEEEecCCCCHH
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHE   99 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~   99 (226)
                           .+.+++|..|...++..|.
T Consensus       204 -----~~~l~~G~hv~~iGs~~p~  222 (320)
T d1omoa_         204 -----AEWVEEGTHINAIGADGPG  222 (320)
T ss_dssp             -----GGGCCTTCEEEECSCCSTT
T ss_pred             -----hhhcCCCCeEeecCCcccc
Confidence                 1457899999988877664

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=98.34  E-value=1.3e-06  Score=68.52  Aligned_cols=112  Identities=13%  Similarity=0.114  Sum_probs=75.4

Q ss_pred             CeEEEEecChhHH----HHHHHHHh--CCCeEE-EEcCCchhHHHHHHC-C---CcccCCHHHHhhh--CCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGK----AISMNLLR--NGFKVT-VWNRTLSKCDELVAH-G---ATVGGSPAEVIKK--CTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~----~~A~~l~~--~G~~V~-~~dr~~~~~~~l~~~-g---~~~~~s~~~~~~~--advvi~~~p~~   67 (226)
                      +||||||+|.+|.    .....+.+  .+++|. ++|+++++.+.+.+. +   .....+.++++++  .|+|++|+|+.
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~~   96 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP   96 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCCc
Confidence            4899999998554    44445544  356765 789999998887654 4   3456899999864  68999999987


Q ss_pred             HHHHHHhhcccccccc--cCCC-cEEEecC-CCCHHHHHHHHHHHHhcC-CcE
Q 027255           68 AAALSVVFDKGGVLEQ--ICPG-KGYIDMS-TVDHETSIKISRAITSKG-GHF  115 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~--l~~g-~ivvd~s-t~~~~~~~~l~~~~~~~g-~~~  115 (226)
                      .+.+.+.   ..+...  ...+ .++++-- ..+.++.+++.+.+++++ +.+
T Consensus        97 ~h~~~~~---~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~  146 (237)
T d2nvwa1          97 EHYEVVK---NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT  146 (237)
T ss_dssp             HHHHHHH---HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred             chhhHHH---HHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeE
Confidence            7776655   211111  1123 4667654 357888899888887664 443

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.33  E-value=1.1e-06  Score=61.55  Aligned_cols=104  Identities=19%  Similarity=0.243  Sum_probs=79.0

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      ++|+|||+    +..|..+.++|.+.||+|+..|++.+.+     .|.....++.++-+..|++++++|. +.+.+++  
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l--   73 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVA--   73 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HHHHHHH--
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCH-HHHHHHH--
Confidence            47999994    7899999999999999999888776543     4788889999998889999999977 5666666  


Q ss_pred             ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                       +++.+. ....+++...+...    ++.+.++++|+.++..
T Consensus        74 -~~~~~~-g~k~v~~~~g~~~~----~~~~~a~~~gi~vigp  109 (116)
T d1y81a1          74 -KEAVEA-GFKKLWFQPGAESE----EIRRFLEKAGVEYSFG  109 (116)
T ss_dssp             -HHHHHT-TCCEEEECTTSCCH----HHHHHHHHHTCEEECS
T ss_pred             -HHHHhc-CCceEEeccchhhH----HHHHHHHHcCCEEEcC
Confidence             444332 23456666655544    4567778889888753

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.30  E-value=5.5e-07  Score=65.36  Aligned_cols=90  Identities=16%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHH----CC----CcccCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA----HG----ATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~----~g----~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      |||+|||+|.+|..+|..|+.+|.  ++.++|+++++++.    +..    ..    +....+. +.++++|+|+++...
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~   79 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence            899999999999999999998774  79999999987543    221    11    1223344 678899999988642


Q ss_pred             H---------------HHHHHHhhcccccccccCCCcEEEecCC
Q 027255           67 P---------------AAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        67 ~---------------~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      +               ..++++.   +.+.+.. +..+++..|+
T Consensus        80 ~~~~g~~r~~l~~~n~~i~~~i~---~~i~~~~-p~aivivvtN  119 (142)
T d1ojua1          80 ARKPGMTRLDLAHKNAGIIKDIA---KKIVENA-PESKILVVTN  119 (142)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHH---HHHHTTS-TTCEEEECSS
T ss_pred             cCCCCCchHHHHHHhhHHHHHHH---HHHHhhC-CCcEEEEecC
Confidence            1               1233333   4454544 5667776665

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.24  E-value=1.5e-06  Score=63.23  Aligned_cols=65  Identities=17%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHH----H----CC--CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELV----A----HG--ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~----~----~g--~~~~~s~~~~~~~advvi~~~p   65 (226)
                      +||+|||+|.+|..+|..|+.+|  .++.++|+++++++...    .    .+  .....+..+.+++||+|+++..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG   78 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLG   78 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecc
Confidence            58999999999999999999877  48999999998754322    1    11  2222333456789999999854

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=98.22  E-value=6.3e-07  Score=74.10  Aligned_cols=92  Identities=17%  Similarity=0.241  Sum_probs=69.7

Q ss_pred             eEEEEecChhHHHHHHHHHh-CC-CeEEEEcCCchhHHHHHHC-----CC--cccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~-~G-~~V~~~dr~~~~~~~l~~~-----g~--~~~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      +++|||+|..+...++.+.. .+ .+|++|+|++++.+++.+.     |+  .++.++++++++||+|++|+++. ....
T Consensus       130 ~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~-s~~P  208 (340)
T d1x7da_         130 KMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-AYAT  208 (340)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-SEEE
T ss_pred             eEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccC-CCCc
Confidence            68999999999999888765 34 4699999999998877642     44  45889999999999999998653 2223


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHH
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHE   99 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~   99 (226)
                      ++.     ...+++|..|.-.++..|.
T Consensus       209 v~~-----~~~l~pG~hI~aiGs~~p~  230 (340)
T d1x7da_         209 IIT-----PDMLEPGMHLNAVGGDCPG  230 (340)
T ss_dssp             EEC-----GGGCCTTCEEEECSCCBTT
T ss_pred             ccc-----hhhcCCCCEEeecccchhh
Confidence            331     1457789988888776554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=98.21  E-value=4.6e-07  Score=67.82  Aligned_cols=109  Identities=19%  Similarity=0.165  Sum_probs=70.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ++|.|+|+|.++++++..|.+.+-+|++++|++++++.+.+.     .+...........++|+||.|+|..-. .... 
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~-~~~~-   96 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS-GGTA-   96 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---------
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccc-cccc-
Confidence            378999999999999999998888999999999999887653     122222222234678999999997532 1111 


Q ss_pred             cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                        .-....++++.+++|..=..|..+. +.+.++++|+.
T Consensus        97 --~~~~~~~~~~~~~~D~vy~~p~~T~-~l~~A~~~g~~  132 (171)
T d1p77a1          97 --SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLT  132 (171)
T ss_dssp             --CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCC
T ss_pred             --chhhhhhcccceeeeeeccCcccHH-HHHHHHHcCCC
Confidence              1122334567888888654443332 33455666764

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.21  E-value=3.8e-06  Score=62.68  Aligned_cols=66  Identities=18%  Similarity=0.262  Sum_probs=48.8

Q ss_pred             CeEEEEecChhHHHHH--HHHHhC----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAIS--MNLLRN----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A--~~l~~~----G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~~~~~~advvi~   62 (226)
                      |||+|||+|+.|...+  ..|+..    +.++.++|+++++++....        .+    +..+++..+++++||+|++
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv~   82 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVIN   82 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEE
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEee
Confidence            8999999999997643  334432    4699999999998764221        12    3456789999999999998


Q ss_pred             ecCC
Q 027255           63 MLAD   66 (226)
Q Consensus        63 ~~p~   66 (226)
                      +.-.
T Consensus        83 ~~~~   86 (171)
T d1obba1          83 TAMV   86 (171)
T ss_dssp             CCCT
T ss_pred             eccc
Confidence            8643

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.6e-06  Score=65.28  Aligned_cols=113  Identities=16%  Similarity=0.137  Sum_probs=74.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCc--c--c---CCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GAT--V--G---GSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~--~--~---~s~~~~~~~advvi~~~   64 (226)
                      .+|.|||+|.+|++++..|.+.|. +++++||++++.+++...        ...  .  .   .+..+....+|+||.|+
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T   98 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT   98 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence            378999999999999999999986 699999998877654321        111  1  1   22345567899999999


Q ss_pred             CCHHHH--HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           65 ADPAAA--LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        65 p~~~~~--~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      |....-  .+.+   ..-...++++.+++|+.-. |..+ .+.+.++++|+.++++
T Consensus        99 p~G~~~~~~~~~---~~~~~~~~~~~~v~Di~Y~-p~~T-~ll~~a~~~g~~~i~G  149 (182)
T d1vi2a1          99 KVGMKPLENESL---VNDISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTIDG  149 (182)
T ss_dssp             STTSTTSCSCCS---CCCGGGSCTTCEEEECCCS-SSSC-HHHHHHHTTTCEEECH
T ss_pred             CCccccccchhh---hhHHHhhhcchhhHHhhcC-cccc-HHHHHHHHCcCeEecc
Confidence            863210  0111   0012456788999999643 3222 3445567788888765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.19  E-value=1.7e-06  Score=62.71  Aligned_cols=65  Identities=11%  Similarity=0.192  Sum_probs=44.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC-----CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-----GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~-----g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      .||+|||+|.+|..+|..|..++.  ++.++|+++++++.    +...     .........+.+++||+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecc
Confidence            489999999999999999999885  79999999876432    2211     11122333456789999999843

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.3e-05  Score=59.29  Aligned_cols=87  Identities=20%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCccc-----CCHHHHhh--------hCCeEEEecCCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK--------KCTITIGMLADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-----~s~~~~~~--------~advvi~~~p~~   67 (226)
                      +|.|+|+|.+|...++.+...|. +|+++|+++++.+..++.|+..+     .++.+..+        .+|+||-|+..+
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~  108 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAE  108 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCCc
Confidence            68999999999999999988998 69999999999998888886532     23333322        479999999886


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCC
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                      ..++..+       ..++++..++-.+.
T Consensus       109 ~~~~~a~-------~~~~~gG~iv~~G~  129 (171)
T d1pl8a2         109 ASIQAGI-------YATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHHHHH-------HHSCTTCEEEECSC
T ss_pred             hhHHHHH-------HHhcCCCEEEEEec
Confidence            6555554       45566666665554

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.18  E-value=9.6e-06  Score=58.67  Aligned_cols=91  Identities=14%  Similarity=0.205  Sum_probs=62.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCC---------cccCCHHHHhhhCCeEEEecCCH-
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA---------TVGGSPAEVIKKCTITIGMLADP-   67 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~---------~~~~s~~~~~~~advvi~~~p~~-   67 (226)
                      .||+|||+ |.+|+.+|..|..+|.  ++.++|.++.+.+.+--...         ....+..+.+++||+|+++...+ 
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            38999995 9999999999998885  69999998876655432221         12345568889999999885421 


Q ss_pred             --------------HHHHHHhhcccccccccCCCcEEEecCC
Q 027255           68 --------------AAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        68 --------------~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                                    ..++++.   +.+.++. +..+++..|+
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~---~~i~~~~-p~~iiivvtN  118 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLT---AACAQHC-PDAMICIISN  118 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECSS
T ss_pred             CCCCCcchHHHHHHHHHHHHH---HHHHhcC-CCeEEEEecC
Confidence                          2345555   5566664 5555555543

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=2.1e-07  Score=69.63  Aligned_cols=106  Identities=12%  Similarity=0.103  Sum_probs=70.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHhhc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~~~   76 (226)
                      ++|||||+|.||...+..|.+..  ..+.+++....+  .+.........+.++++++  .|+|++|+|+..+.+.+.  
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~~~--   83 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYIR--   83 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHHH--
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccccccccccc--
Confidence            47999999999999998887532  224444432221  1111222234578888864  688999999987766554  


Q ss_pred             ccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcE
Q 027255           77 KGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHF  115 (226)
Q Consensus        77 ~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~  115 (226)
                           ..++.|+ ++++-- +.++++.+++.+..++.+..+
T Consensus        84 -----~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~  119 (172)
T d1lc0a1          84 -----QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVL  119 (172)
T ss_dssp             -----HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             -----cccccchhhhcCCCccccHHHHHHHHHHHHHcCCeE
Confidence                 3334454 556643 457899999999888877664

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.17  E-value=2.7e-06  Score=62.75  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC----C--CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH----G--ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~----g--~~~~~s~~~~~~~advvi~~~p   65 (226)
                      .||+|||+|.+|..+|..|...|.  ++.++|+++++++.    +...    +  ........+.+++||+|+++.-
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg   97 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAG   97 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecC
Confidence            389999999999999999999986  79999999887643    2221    1  1122333456789999998753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.15  E-value=4.4e-06  Score=60.37  Aligned_cols=64  Identities=8%  Similarity=0.087  Sum_probs=47.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHH----------CCCc--ccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA----------HGAT--VGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~----------~g~~--~~~s~~~~~~~advvi~~~p   65 (226)
                      +||+|||+|.+|..+|..|+.++. ++.++|+++++.+....          ....  .+.+.+ .++++|+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeee
Confidence            589999999999999999988775 89999998887543221          1122  234555 4689999999874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=2.4e-06  Score=56.74  Aligned_cols=64  Identities=22%  Similarity=0.243  Sum_probs=49.9

Q ss_pred             CeEEEEecChhHH-HHHHHHHhCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMGK-AISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG~-~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~~~~~~advvi~~~   64 (226)
                      |||=|||.|.+|. ++|+.|.++|+.|.++|+.+. ..++|.+.|+.+.. ...+-+.++|+|+...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            8999999999998 789999999999999998764 56778888987642 2223346678776653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=8.5e-07  Score=67.83  Aligned_cols=65  Identities=20%  Similarity=0.261  Sum_probs=52.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p   65 (226)
                      +||.|+| .|.+|+.+++.|+++||+|+++.|++++.......++++       ..+..++++++|+||.++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g   76 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence            4799999 599999999999999999999999999876554444432       2345677889999999875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.11  E-value=5.1e-06  Score=60.61  Aligned_cols=65  Identities=11%  Similarity=0.234  Sum_probs=47.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------C--Ccc-cCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------G--ATV-GGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g--~~~-~~s~~~~~~~advvi~~~p   65 (226)
                      +||+|||+|..|..+|..|...+. ++.+||+++++.+.....        +  ..+ ..+..+.++++|+|+++.-
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag   80 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence            489999999999999988887774 799999998775543211        1  222 2344566789999999864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.09  E-value=4.3e-06  Score=60.51  Aligned_cols=64  Identities=8%  Similarity=0.250  Sum_probs=48.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC----C---CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH----G---ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~----g---~~~~~s~~~~~~~advvi~~~p   65 (226)
                      .||+|||+|.+|..+|..|..+|.  ++.++|+++++++.    +...    +   +....+ .+.++++|+|+++.-
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~-~~~~~daDvVVitaG   78 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAG   78 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCC-HHHhhCCcEEEEecc
Confidence            389999999999999999998885  79999999987543    2221    1   122334 355789999999863

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=3.6e-06  Score=61.98  Aligned_cols=90  Identities=19%  Similarity=0.299  Sum_probs=59.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC----CC---cccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH----GA---TVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~----g~---~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      +||+|||+|.+|..+|..|...|+  ++.++|+++++++.    +...    +.   ....+ .+.++++|+|+++...+
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvitag~~   98 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIITAGAR   98 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEecccc
Confidence            379999999999999999999885  79999999876543    3321    11   12334 45558999999876321


Q ss_pred             ---------------HHHHHHhhcccccccccCCCcEEEecCC
Q 027255           68 ---------------AAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        68 ---------------~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                                     ..++++.   ..+.+.. ++.+++..|+
T Consensus        99 ~~~~~~R~dll~~N~~i~~~i~---~~i~~~~-p~~ivivvtN  137 (159)
T d2ldxa1          99 MVSGQTRLDLLQRNVAIMKAIV---PGVIQNS-PDCKIIVVTN  137 (159)
T ss_dssp             CCTTTCSSCTTHHHHHHHHHHT---TTHHHHS-TTCEEEECSS
T ss_pred             cCCCCCHHHHHHHHHHHHHHHH---HHHhccC-CCeEEEEeCC
Confidence                           1244444   4455544 5666666554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.08  E-value=2.9e-05  Score=57.12  Aligned_cols=86  Identities=16%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-------CCHHHHh--------hhCCeEEEecCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVI--------KKCTITIGMLAD   66 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-------~s~~~~~--------~~advvi~~~p~   66 (226)
                      +|.|+|+|.+|...++.+...|.+|+++++++++.+.+++.|+...       .+..+..        ..+|+||-|+..
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~  108 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGN  108 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCC
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCCC
Confidence            6889999999999999888899999999999999998888775421       1222221        136788888776


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecC
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      +..++..+       ..++++..++..+
T Consensus       109 ~~~~~~a~-------~~~~~~G~iv~~G  129 (170)
T d1e3ja2         109 EKCITIGI-------NITRTGGTLMLVG  129 (170)
T ss_dssp             HHHHHHHH-------HHSCTTCEEEECS
T ss_pred             hHHHHHHH-------HHHhcCCceEEEe
Confidence            55555444       4455555555544

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.05  E-value=8.6e-06  Score=58.56  Aligned_cols=103  Identities=13%  Similarity=0.160  Sum_probs=78.5

Q ss_pred             eEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      +|+|||+    +..|..++++|.++||+|+..|+....+     .|.....++.++-...|++++++|. +.+.+++   
T Consensus        21 sIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~---   91 (139)
T d2d59a1          21 KIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV---   91 (139)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH---
T ss_pred             eEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeCH-HHHHHHH---
Confidence            6999996    5799999999999999999888765432     4778889999988889999999976 6777777   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +++... ....+++..+..++    ++.+.++++|+.++.-
T Consensus        92 ~e~~~~-g~k~v~~~~G~~~e----e~~~~a~~~gi~vig~  127 (139)
T d2d59a1          92 EQAIKK-GAKVVWFQYNTYNR----EASKKADEAGLIIVAN  127 (139)
T ss_dssp             HHHHHH-TCSEEEECTTCCCH----HHHHHHHHTTCEEEES
T ss_pred             HHHHHh-CCCEEEEeccccCH----HHHHHHHHCCCEEEcC
Confidence            555442 34456666665554    4556777889988753

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=7e-06  Score=58.21  Aligned_cols=95  Identities=19%  Similarity=0.173  Sum_probs=64.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |||+|+|+ |.||+.+++.+.+.||++. .+|++..                 +..+++|+||=.. .++.+.+.+   +
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------------~~~~~~DVvIDFS-~p~~~~~~l---~   59 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------EELDSPDVVIDFS-SPEALPKTV---D   59 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------EECSCCSEEEECS-CGGGHHHHH---H
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------------HHhccCCEEEEec-CHHHHHHHH---H
Confidence            89999996 9999999999999999866 4465432                 2235689988777 446666665   2


Q ss_pred             ccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           79 GVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                         ..++.+..+|-.||. +++..+.+.+..  +.+..+-+|.+
T Consensus        60 ---~~~~~~~p~ViGTTG~~~~~~~~i~~~a--k~~pv~~a~N~   98 (128)
T d1vm6a3          60 ---LCKKYRAGLVLGTTALKEEHLQMLRELS--KEVPVVQAYSR   98 (128)
T ss_dssp             ---HHHHHTCEEEECCCSCCHHHHHHHHHHT--TTSEEEECSCT
T ss_pred             ---HHHhcCCCEEEEcCCCCHHHHHHHHHHH--hhCCEEeeecc
Confidence               234456777877776 455555555543  23555555543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.7e-06  Score=56.92  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +||.|+|+|..|.++|+.|.+.|++|++||.++.
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            4799999999999999999999999999997554

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.01  E-value=1.9e-06  Score=61.34  Aligned_cols=105  Identities=12%  Similarity=0.041  Sum_probs=75.0

Q ss_pred             eEEEEec----ChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255            2 EVGFLGL----GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvIG~----G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~   76 (226)
                      +|+|||+    +.+|..+.++|.+.| ++|+..|++.+.+     .|...+.|+.++-...|++++++|. +.+.+++  
T Consensus        10 sIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~-~~~~~~~--   81 (129)
T d2csua1          10 GIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTL--   81 (129)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCH-HHHHHHH--
T ss_pred             eEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecCh-HHhHHHH--
Confidence            6999997    899999999998766 6899998876543     4788899999998889999999986 6777777  


Q ss_pred             ccccccccCCCcEEEecCC---CC---HHHHHHHHHHHHhcCCcEE
Q 027255           77 KGGVLEQICPGKGYIDMST---VD---HETSIKISRAITSKGGHFL  116 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~st---~~---~~~~~~l~~~~~~~g~~~l  116 (226)
                       +++.+.- -..+++-.+-   ..   ....+++.+.+++.|++++
T Consensus        82 -~~~~~~g-~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~  125 (129)
T d2csua1          82 -IQCGEKG-VKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII  125 (129)
T ss_dssp             -HHHHHHT-CCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             -HHHHHcC-CCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEe
Confidence             4444332 2233333321   11   2234456677777788776

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.96  E-value=3.3e-06  Score=63.21  Aligned_cols=114  Identities=14%  Similarity=0.112  Sum_probs=72.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CC-----cccCCHHHHhhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GA-----TVGGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~-----~~~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      ++|.|||.|.++++++..|.+.| +|++++|++++++.+.+.     ..     ....+.......+|+|+.|+|.+..-
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~~   97 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYP   97 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTT
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcccccc
Confidence            46899999999999999998777 899999999998887542     11     11233444456789999999864211


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ..-. ...--...+.++.+++|+.-....+  .+.+.++++|+.++++
T Consensus        98 ~~~~-~~~~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~G  142 (177)
T d1nvta1          98 NIDV-EPIVKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTING  142 (177)
T ss_dssp             CCSS-CCSSCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEECT
T ss_pred             cccc-cchhhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccCC
Confidence            0000 0000113345778888876432221  2344556778887764

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.96  E-value=5.4e-06  Score=64.64  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=98.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHH-hhhCCeEEEecCCHHHHHHHhhccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEV-IKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~-~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ++|.|-|+|++|..+|+.|.+.|..|++.|.++..++.+... |....+ +.+. -..||+++-|--.....++.+    
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~-~~~~~~~~cDIl~PcA~~~~I~~~~~----  114 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVA-PNAIYGVTCDIFAPCALGAVLNDFTI----  114 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECC-GGGTTTCCCSEEEECSCSCCBSTTHH----
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccC-CcccccccccEecccccccccChHHh----
Confidence            479999999999999999999999999999999998887664 665544 4444 347999998864432222222    


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC--CCCChHhhccCcEEEEeccCCCCCCCcchhhcccccc
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP--VSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT  156 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p--v~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~~~  156 (226)
                         +.+ +-++|+......|.+. +..+.+.++|+.|+.--  -.|+...                     .+++...  
T Consensus       115 ---~~l-~ak~Ive~ANn~~t~~-ea~~~L~~rGI~~iPD~laNAGGVi~---------------------s~~E~~~--  166 (230)
T d1leha1         115 ---PQL-KAKVIAGSADNQLKDP-RHGKYLHELGIVYAPDYVINAGGVIN---------------------VADELYG--  166 (230)
T ss_dssp             ---HHC-CCSEECCSCSCCBSSH-HHHHHHHHHTCEECCHHHHTTHHHHH---------------------HHHGGGC--
T ss_pred             ---hcc-CccEEEecccCCCCCc-hHHHHHHhhCcEEEeehhhcccchhh---------------------hhhhhhC--
Confidence               233 2356777665544322 34677888899875432  1222210                     1122111  


Q ss_pred             cccCcccC-CccchHHHHHHHHHHHHHhhcCCCchHH
Q 027255          157 MLQSNYAP-AFPLKHQQKDMRLALALGDENAVSMPIA  192 (226)
Q Consensus       157 ~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~  192 (226)
                         .+... .-.++.+...++.+++.+++.|+++...
T Consensus       167 ---~~~~~~~~~l~~I~~~~~~vl~~a~~~~~~~~~a  200 (230)
T d1leha1         167 ---YNRTRAMKRVDGIYDSIEKIFAISKRDGVPSYVA  200 (230)
T ss_dssp             ---CCHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence               01100 1124455566788889999999876554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=2.7e-05  Score=56.24  Aligned_cols=91  Identities=15%  Similarity=0.195  Sum_probs=57.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHh-C--CCeEEEEcCCchhHH---HHHHCC------CcccCCHHHHhhhCCeEEEecCCH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLR-N--GFKVTVWNRTLSKCD---ELVAHG------ATVGGSPAEVIKKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~-~--G~~V~~~dr~~~~~~---~l~~~g------~~~~~s~~~~~~~advvi~~~p~~   67 (226)
                      |||+||| .|.+|..+|..|.. .  +.++.++|..+....   .+....      .....+..+.++++|+|+++.-.+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            8999999 59999999988764 3  468999998653311   222211      111233456788999999986321


Q ss_pred             ---------------HHHHHHhhcccccccccCCCcEEEecCC
Q 027255           68 ---------------AAALSVVFDKGGVLEQICPGKGYIDMST   95 (226)
Q Consensus        68 ---------------~~~~~v~~~~~~l~~~l~~g~ivvd~st   95 (226)
                                     ..++++.   +.+.+.. |+.+++..|+
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~---~~i~~~~-p~aivivvtN  119 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLV---QQVAKTC-PKACIGIITN  119 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECSS
T ss_pred             CCCCcchhhHHHHHHHHHHHHH---HHHHhhC-CCcEEEEccC
Confidence                           2344444   5565555 5566655544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=1.5e-05  Score=59.56  Aligned_cols=44  Identities=20%  Similarity=0.089  Sum_probs=38.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~   75 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD   75 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred             EEEEECCCccchhheecccccccccccccccccccccccccccce
Confidence            68899999999998888888897 799999999999888777753

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=5.6e-06  Score=61.15  Aligned_cols=66  Identities=12%  Similarity=0.050  Sum_probs=49.7

Q ss_pred             CeEEEEecChhHHHHHHHHH-h-C----CCeEEEEcCCchhHHHHHHC---------CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLGIMGKAISMNLL-R-N----GFKVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~-~----G~~V~~~dr~~~~~~~l~~~---------g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||.|+.|.+++-... . .    ..++.++|+++++.+.....         .....++..+.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            89999999999988875432 2 1    35899999999987653321         23456788899999999999874


Q ss_pred             C
Q 027255           66 D   66 (226)
Q Consensus        66 ~   66 (226)
                      .
T Consensus        81 ~   81 (162)
T d1up7a1          81 P   81 (162)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.90  E-value=1.2e-05  Score=54.09  Aligned_cols=64  Identities=20%  Similarity=0.311  Sum_probs=47.8

Q ss_pred             CeEEEEecChhH-HHHHHHHHhCCCeEEEEcCCc-hhHHHHHHCCCcccC-CHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLGIMG-KAISMNLLRNGFKVTVWNRTL-SKCDELVAHGATVGG-SPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G~mG-~~~A~~l~~~G~~V~~~dr~~-~~~~~l~~~g~~~~~-s~~~~~~~advvi~~~   64 (226)
                      ++|-|||.|..| +++|+.|.+.||+|.++|+.. ...+.+.+.|+.+.. ...+-+.+.|+|+...
T Consensus         9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~   75 (96)
T d1p3da1           9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS   75 (96)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred             CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence            479999999999 677999999999999999864 355677778876532 2223346777776653

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=7.4e-06  Score=58.71  Aligned_cols=105  Identities=16%  Similarity=0.185  Sum_probs=79.4

Q ss_pred             eEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      +|+|||+    +..|..+.++|.+.||+++.++.++... .  -.|.....++.++-...|++++++|. +.+.+++   
T Consensus        15 sIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~-~--i~g~~~~~~l~~i~~~iD~v~v~~p~-~~v~~~v---   87 (136)
T d1iuka_          15 TIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE-E--LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHL---   87 (136)
T ss_dssp             EEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS-E--ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH---
T ss_pred             eEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc-e--eeceecccchhhccCCCceEEEeccH-HHHHHHH---
Confidence            6999997    7899999999999999999998875421 1  13777888999888888999999976 6676766   


Q ss_pred             cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ++.... ....+++.....+.    ++.+.++++|+.++.-
T Consensus        88 ~~~~~~-g~k~i~~q~G~~~~----e~~~~a~~~Gi~vV~~  123 (136)
T d1iuka_          88 PEVLAL-RPGLVWLQSGIRHP----EFEKALKEAGIPVVAD  123 (136)
T ss_dssp             HHHHHH-CCSCEEECTTCCCH----HHHHHHHHTTCCEEES
T ss_pred             HHHHhh-CCCeEEEecCccCH----HHHHHHHHcCCEEEcC
Confidence            444332 34567776665543    5677888899998753

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.83  E-value=1.8e-05  Score=57.19  Aligned_cols=64  Identities=20%  Similarity=0.355  Sum_probs=46.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchh--HH----HHHHC------CCcc---cCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSK--CD----ELVAH------GATV---GGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~----~l~~~------g~~~---~~s~~~~~~~advvi~   62 (226)
                      |||+|||+ |.+|..+|..|+..+.  ++.++|++++.  ++    .+...      ..+.   ..+..+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            89999995 9999999999999884  89999998642  22    22221      1111   2234467789999999


Q ss_pred             ec
Q 027255           63 ML   64 (226)
Q Consensus        63 ~~   64 (226)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            84

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.82  E-value=3.1e-05  Score=57.58  Aligned_cols=73  Identities=15%  Similarity=0.042  Sum_probs=51.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCccc-----CCHHHHhh------hCCeEEEecCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK------KCTITIGMLADPAA   69 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-----~s~~~~~~------~advvi~~~p~~~~   69 (226)
                      +|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.|+..+     .++.+.+.      ..|+||.|+..+..
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~  109 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSET  109 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTH
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHHH
Confidence            58999999999998888888896 69999999999888888776422     12222221      15677777665444


Q ss_pred             HHHHh
Q 027255           70 ALSVV   74 (226)
Q Consensus        70 ~~~v~   74 (226)
                      +++.+
T Consensus       110 ~~~a~  114 (174)
T d1jqba2         110 LSQAV  114 (174)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.78  E-value=5.3e-05  Score=52.10  Aligned_cols=73  Identities=18%  Similarity=0.149  Sum_probs=47.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhH-HHHHHC-CCcccC--CHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAH-GATVGG--SPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~-~~l~~~-g~~~~~--s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      .+|.|||.|..|..-|+.|++.|.+|++++.....- ..+.+. +++...  -..+.++++++|+.++.++..-+.+
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~i   89 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRV   89 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHHHHHHH
Confidence            379999999999999999999999999998765432 233332 232211  1122345677777776554333333

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.76  E-value=4.9e-06  Score=60.26  Aligned_cols=89  Identities=17%  Similarity=0.180  Sum_probs=55.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC---eEEEEcCCchhHHHHHHCC--CcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLADPAAALSVV   74 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~---~V~~~dr~~~~~~~l~~~g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v~   74 (226)
                      |||||||+ |..|..+.+.|.++.|   ++.....+...-+.+...+  ........+...++|++|.++|..... +..
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~-~~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSR-AHA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHH-HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhh-hhc
Confidence            79999998 9999999999987665   4554432222111111111  111222234467899999999875443 333


Q ss_pred             hcccccccccCCCcEEEecCCC
Q 027255           75 FDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        75 ~~~~~l~~~l~~g~ivvd~st~   96 (226)
                         .   ....+|..|||.|+.
T Consensus        82 ---~---~~~~~g~~VID~Ss~   97 (144)
T d2hjsa1          82 ---E---RARAAGCSVIDLSGA   97 (144)
T ss_dssp             ---H---HHHHTTCEEEETTCT
T ss_pred             ---c---ccccCCceEEeechh
Confidence               2   234578999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=4.2e-05  Score=56.32  Aligned_cols=86  Identities=17%  Similarity=0.181  Sum_probs=62.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc---CCHHHH---hhhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEV---IKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~---~s~~~~---~~~advvi~~~p~~~~~~~v~~   75 (226)
                      +|.|+|+|.+|...++.+...|.++++.++++++.+.+.+.|+..+   .+....   .+..|++|.++..+..+...+ 
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~-  111 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFT-  111 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHH-
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHHHH-
Confidence            6899999999998888888899999999999999888888886532   222222   235899999997755565554 


Q ss_pred             cccccccccCCCcEEEecC
Q 027255           76 DKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~s   94 (226)
                            ..+.++..++..+
T Consensus       112 ------~~l~~~G~iv~~G  124 (168)
T d1uufa2         112 ------TLLKRDGTMTLVG  124 (168)
T ss_dssp             ------TTEEEEEEEEECC
T ss_pred             ------HHHhcCCEEEEec
Confidence                  3444555555554

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.71  E-value=2.5e-05  Score=56.59  Aligned_cols=91  Identities=14%  Similarity=0.206  Sum_probs=52.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CC---eEEEEcCC--chhHHHHHHCC-CcccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GF---KVTVWNRT--LSKCDELVAHG-ATVGGSPAEVIKKCTITIGMLADPAAALS   72 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~---~V~~~dr~--~~~~~~l~~~g-~~~~~s~~~~~~~advvi~~~p~~~~~~~   72 (226)
                      |||||||. |..|+.+.+.|.++ .|   ++..+..+  ..+.-.+...- ........+..+++|+||+|+|+.. ..+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~-s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSY-TEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHH-HHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchH-HHH
Confidence            89999987 99999999988764 34   44443322  11211111111 1111223355689999999999854 444


Q ss_pred             HhhcccccccccCCCcEEEecCCC
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +.   ..+.+. ....+|||.|..
T Consensus        80 ~~---~~l~~~-g~~~~VIDlSsd   99 (147)
T d1mb4a1          80 VY---PALRQA-GWKGYWIDAAST   99 (147)
T ss_dssp             HH---HHHHHT-TCCSEEEESSST
T ss_pred             Hh---HHHHHc-CCceEEEeCCcc
Confidence            44   333221 133579999963

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.70  E-value=0.00015  Score=54.01  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=27.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCC-CeEEE-EcCCchh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG-FKVTV-WNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~-~dr~~~~   35 (226)
                      ||||.|+|.+|+.+++.+..+. ++|.. .|+++..
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~   38 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNY   38 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcH
Confidence            8999999999999999999764 67655 4666553

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.69  E-value=7.8e-05  Score=55.05  Aligned_cols=65  Identities=12%  Similarity=0.183  Sum_probs=46.6

Q ss_pred             CeEEEEecChhHHHHH-HHHHh--CC---CeEEEEcCCchhHHHHHH---C-----C----CcccCCHHHHhhhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAIS-MNLLR--NG---FKVTVWNRTLSKCDELVA---H-----G----ATVGGSPAEVIKKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A-~~l~~--~G---~~V~~~dr~~~~~~~l~~---~-----g----~~~~~s~~~~~~~advvi~   62 (226)
                      .||.|||.|+.|++.+ ..+..  ..   -++.++|.++++++....   .     +    .....+..|+++++|+|++
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvi   83 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA   83 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEE
Confidence            3799999999987643 23332  22   379999999998763221   1     2    3456788999999999999


Q ss_pred             ecC
Q 027255           63 MLA   65 (226)
Q Consensus        63 ~~p   65 (226)
                      +.-
T Consensus        84 tag   86 (167)
T d1u8xx1          84 HIR   86 (167)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            974

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.66  E-value=6.2e-05  Score=55.68  Aligned_cols=66  Identities=8%  Similarity=0.012  Sum_probs=45.0

Q ss_pred             CeEEEEecChhHHH--HHHHHHhC-C---CeEEEEcCCchh--HHHHH--------HCCC----cccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGLGIMGKA--ISMNLLRN-G---FKVTVWNRTLSK--CDELV--------AHGA----TVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~G~mG~~--~A~~l~~~-G---~~V~~~dr~~~~--~~~l~--------~~g~----~~~~s~~~~~~~advv   60 (226)
                      |||.|||+|+.|..  ++..+... .   -++.++|+++++  .+.+.        ..+.    ..+++..++++++|+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            79999999987754  44444432 1   389999998854  33221        1222    3467788999999999


Q ss_pred             EEecCC
Q 027255           61 IGMLAD   66 (226)
Q Consensus        61 i~~~p~   66 (226)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999854

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=3.3e-05  Score=56.88  Aligned_cols=112  Identities=23%  Similarity=0.206  Sum_probs=72.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEE-EEcCCchhH-----HH---HHHCCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKC-----DE---LVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~-----~~---l~~~g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      |||+|+|+ |.||+.+++.+.+. ++++. +++|.....     ..   ....++....+++++.+.+|+||-.. .++.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs-~p~~   83 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT-RPEG   83 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS-CHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec-cHHH
Confidence            58999995 99999999998875 56644 566643321     01   11235677888888889999998887 5566


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                      +.+.+   +   .+.+.+..+|-.||. +.+....+.+..+  .+..+-+|-+
T Consensus        84 ~~~~~---~---~a~~~~~~~ViGTTG~~~~~~~~i~~~a~--~ipi~~apN~  128 (162)
T d1diha1          84 TLNHL---A---FCRQHGKGMVIGTTGFDEAGKQAIRDAAA--DIAIVFAANF  128 (162)
T ss_dssp             HHHHH---H---HHHHTTCEEEECCCCCCHHHHHHHHHHTT--TSCEEECSCC
T ss_pred             HHHHH---H---HHHhccceeEEecCCCcHHHHHHHHHHcC--CCCEEEEccc
Confidence            66665   2   334467777777775 4555555544332  3444555544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.63  E-value=9.9e-05  Score=53.90  Aligned_cols=44  Identities=20%  Similarity=0.176  Sum_probs=39.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|++|++.++++++.+.+++.|+.
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~   73 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD   73 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc
Confidence            68899999999998888888999999999999999888887754

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.58  E-value=0.0001  Score=52.43  Aligned_cols=89  Identities=17%  Similarity=0.276  Sum_probs=64.1

Q ss_pred             eEEEEecC----------hhHHHHHHHHHhCCCeEEEEcCCchhH-------HHHH----HCCCcccCCHHHHhhhCCeE
Q 027255            2 EVGFLGLG----------IMGKAISMNLLRNGFKVTVWNRTLSKC-------DELV----AHGATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         2 ~IgvIG~G----------~mG~~~A~~l~~~G~~V~~~dr~~~~~-------~~l~----~~g~~~~~s~~~~~~~advv   60 (226)
                      ||+|+|+-          +-...++..|.+.|++|.+||+.-+..       +.+.    ..+...+.++.++++++|+|
T Consensus        15 kI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~i   94 (136)
T d1mv8a3          15 KVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVL   94 (136)
T ss_dssp             EEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEE
T ss_pred             EEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceEE
Confidence            68888874          567789999999999999999733211       1111    12355678999999999999


Q ss_pred             EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCH
Q 027255           61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~   98 (226)
                      ++++++++ .+++.       ..+.++++|+|+-...+
T Consensus        95 vi~t~h~~-f~~l~-------~~~~~~~~I~D~~~~~~  124 (136)
T d1mv8a3          95 VLGNGDEL-FVDLV-------NKTPSGKKLVDLVGFMP  124 (136)
T ss_dssp             EECSCCGG-GHHHH-------HSCCTTCEEEESSSCCS
T ss_pred             EEEeCCHH-HHHHH-------HHhcCCCEEEECCCCCC
Confidence            99998854 44443       33557889999876543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.57  E-value=0.00011  Score=53.75  Aligned_cols=44  Identities=20%  Similarity=0.189  Sum_probs=39.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~   73 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS   73 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence            68999999999998888888999999999999999888887754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.57  E-value=0.00012  Score=54.14  Aligned_cols=73  Identities=18%  Similarity=0.152  Sum_probs=51.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHCCCccc-----CCHHHHhhh-----CCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVG-----GSPAEVIKK-----CTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~g~~~~-----~s~~~~~~~-----advvi~~~p~~~~~   70 (226)
                      +|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.|+..+     .++.+.+++     .|+||.|+......
T Consensus        31 ~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~  110 (174)
T d1f8fa2          31 SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEIL  110 (174)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHH
T ss_pred             EEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHHH
Confidence            689999999999999888888865 6678999999988888776321     223333322     57777777665545


Q ss_pred             HHHh
Q 027255           71 LSVV   74 (226)
Q Consensus        71 ~~v~   74 (226)
                      +..+
T Consensus       111 ~~~~  114 (174)
T d1f8fa2         111 KQGV  114 (174)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00045  Score=49.67  Aligned_cols=73  Identities=21%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhH----HHHHHCCCccc---CCHHHH-----hhhCCeEEEecCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC----DELVAHGATVG---GSPAEV-----IKKCTITIGMLADPAA   69 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~----~~l~~~g~~~~---~s~~~~-----~~~advvi~~~p~~~~   69 (226)
                      .|-|+|+|.+|..+++.|.+.|++|++.+.++++.    +.+...|+.+.   .+-.+.     ++++|.|+++++++..
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            37899999999999999999999999999998753    33334465432   122223     3568999999988665


Q ss_pred             HHHHh
Q 027255           70 ALSVV   74 (226)
Q Consensus        70 ~~~v~   74 (226)
                      ...++
T Consensus        85 n~~~~   89 (153)
T d1id1a_          85 NAFVV   89 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00011  Score=54.07  Aligned_cols=73  Identities=22%  Similarity=0.259  Sum_probs=58.6

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||-+. +|++++..|.+.|..|++++...              .++.+..+++|+|+.++..+..+.        
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p~~i~--------   95 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGFIP--------   95 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTCBC--------
T ss_pred             ceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCccccc--------
Confidence            4789999977 99999999999999999997644              345677889999999997754321        


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                       .+.+++|.++||....
T Consensus        96 -~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          96 -GDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             -TTTSCTTCEEEECCCE
T ss_pred             -ccccCCCcEEEecCce
Confidence             2456799999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=9.2e-05  Score=54.41  Aligned_cols=65  Identities=18%  Similarity=0.187  Sum_probs=50.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc---CCHHHHh----hhCCeEEEecCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEVI----KKCTITIGMLAD   66 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~---~s~~~~~----~~advvi~~~p~   66 (226)
                      +|.|+|+|.+|...++.+...|.+|+++++++++.+.+.+.|+..+   .+..+..    +..|+++.|+..
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~  101 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS  101 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence            6899999999998888777789999999999999999988886432   1111222    346899988764

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=6.3e-05  Score=54.76  Aligned_cols=64  Identities=13%  Similarity=0.254  Sum_probs=45.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEE--cCCchhHHHHHH---C-------CCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVW--NRTLSKCDELVA---H-------GATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~--dr~~~~~~~l~~---~-------g~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+ |.+|+.+|..|+..++       ...++  +++.++.+....   .       ......+..+.++++|+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            58999997 9999999999987653       12333  444444443321   1       244567788999999999


Q ss_pred             EEec
Q 027255           61 IGML   64 (226)
Q Consensus        61 i~~~   64 (226)
                      +++.
T Consensus        85 iita   88 (154)
T d1y7ta1          85 LLVG   88 (154)
T ss_dssp             EECC
T ss_pred             Eeec
Confidence            9986

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=0.00021  Score=53.05  Aligned_cols=87  Identities=23%  Similarity=0.331  Sum_probs=56.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC-CeEEEE-cC-Cch-hHHHHHHC--C-C-cccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NR-TLS-KCDELVAH--G-A-TVGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~-dr-~~~-~~~~l~~~--g-~-~~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      |||||+|. |..|..+.+.|.++- +++... .+ +.. ++......  + . ....++++..+++|+||+++|.....+
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~~   81 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYD   81 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHHH
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHHH
Confidence            48999997 999999999998864 355443 32 222 22222111  1 1 123456677788999999999966543


Q ss_pred             HHhhcccccccccCCCcEEEecCCC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                       ..   .    .. .+..|||.|+-
T Consensus        82 -~~---~----~~-~~~~VIDlSad   97 (176)
T d1vkna1          82 -LV---R----EL-KGVKIIDLGAD   97 (176)
T ss_dssp             -HH---T----TC-CSCEEEESSST
T ss_pred             -HH---H----hh-ccceEEecCcc
Confidence             33   1    12 57889999974

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.50  E-value=0.00019  Score=53.17  Aligned_cols=35  Identities=17%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEE-EEcCCchh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVT-VWNRTLSK   35 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~-~~dr~~~~   35 (226)
                      +||||.|.|.+|+.+.+.+..+. .+|. +.|+++..
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~   39 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF   39 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence            48999999999999999998754 5644 55776654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.48  E-value=0.00017  Score=51.66  Aligned_cols=64  Identities=14%  Similarity=0.112  Sum_probs=43.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCC--eEEEEcCCc--hhHH----HHHH---C--CCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGF--KVTVWNRTL--SKCD----ELVA---H--GATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~--~V~~~dr~~--~~~~----~l~~---~--g~~~~~s~~~~~~~advvi~~~   64 (226)
                      .||+||| .|.+|..+|..|..++.  ++.++|++.  ++.+    .+..   .  ...+.....+.+++||+|+++.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvita   78 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITA   78 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEec
Confidence            4899999 69999999999999885  799999753  2222    2222   1  1222222334568999999875

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=0.00085  Score=47.47  Aligned_cols=98  Identities=15%  Similarity=0.162  Sum_probs=64.9

Q ss_pred             eEEEEe-cChhHHHHHHHHHh-CCCeEE-EEcCCchhHHHHHHCCCcccCCHHHHh-hhCCeEEEecCCHHHHHHHhhcc
Q 027255            2 EVGFLG-LGIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      ||+|+| .|.||+.+++.+.+ .++++. .+|+...               +.... .++|+||=.. .++.+.+.+   
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~---------------~~~~~~~~~DvvIDFS-~p~~~~~~~---   61 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP---------------LSLLTDGNTEVVIDFT-HPDVVMGNL---   61 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC---------------THHHHTTTCSEEEECC-CTTTHHHHH---
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---------------hhhhccccCCEEEEcc-cHHHHHHHH---
Confidence            799999 59999999998766 457754 4565421               12222 4689998887 445666655   


Q ss_pred             cccccccCCCcEEEecCCC-CHHHHHHHHHHH-HhcCCcEEecCCC
Q 027255           78 GGVLEQICPGKGYIDMSTV-DHETSIKISRAI-TSKGGHFLEAPVS  121 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~-~~~g~~~ld~pv~  121 (226)
                      +   ..++.+..+|-.||. +++..+.+.+.+ +.+.+..+-+|-+
T Consensus        62 ~---~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNf  104 (135)
T d1yl7a1          62 E---FLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF  104 (135)
T ss_dssp             H---HHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             H---HHHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCc
Confidence            2   334567777777775 567777777754 3456766666655

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00021  Score=52.65  Aligned_cols=74  Identities=23%  Similarity=0.173  Sum_probs=59.0

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      ++|.|||-+. .|+++|..|.+.|..|++++....              ++.+..+++|+|++++..+..++        
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~--------------~l~~~~~~aDivi~a~G~~~~i~--------   97 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA--------------HLDEEVNKGDILVVATGQPEMVK--------   97 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------SHHHHHTTCSEEEECCCCTTCBC--------
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccc--------------cHHHHHhhccchhhccccccccc--------
Confidence            4689999966 999999999999999999987543              34556779999999998854322        


Q ss_pred             cccccCCCcEEEecCCCC
Q 027255           80 VLEQICPGKGYIDMSTVD   97 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~~   97 (226)
                       ...+++|.++||.+...
T Consensus        98 -~~~vk~g~iviDvgi~~  114 (170)
T d1a4ia1          98 -GEWIKPGAIVIDCGINY  114 (170)
T ss_dssp             -GGGSCTTCEEEECCCBC
T ss_pred             -cccccCCCeEeccCccc
Confidence             24578999999998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.43  E-value=0.00029  Score=49.30  Aligned_cols=71  Identities=14%  Similarity=0.112  Sum_probs=53.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc---CCHHHHh-----hhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEVI-----KKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~---~s~~~~~-----~~advvi~~~p~~~~~~~v   73 (226)
                      .|-|+|.|.+|..+++.|  .|++|.+.+.++++.+.+...|..+.   .+-.+.+     ++|+.++++++++.....+
T Consensus         2 HivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~   79 (129)
T d2fy8a1           2 HVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHC   79 (129)
T ss_dssp             CEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHH
Confidence            477999999999999998  46788899999999999988876542   1222333     4689999999886654444


Q ss_pred             h
Q 027255           74 V   74 (226)
Q Consensus        74 ~   74 (226)
                      +
T Consensus        80 ~   80 (129)
T d2fy8a1          80 I   80 (129)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00015  Score=52.28  Aligned_cols=108  Identities=14%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             eEEEEec-ChhHHHHHHHHHhC-CC---eEEEEcCCchhHHH--HHHCCCcc-cCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRN-GF---KVTVWNRTLSKCDE--LVAHGATV-GGSPAEVIKKCTITIGMLADPAAALSV   73 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~-G~---~V~~~dr~~~~~~~--l~~~g~~~-~~s~~~~~~~advvi~~~p~~~~~~~v   73 (226)
                      ||||||+ |..|+.+.+.|+++ .|   +++.+..+...-..  +....... .....+..+++|++|+|+|++. .+..
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~~   81 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNEI   81 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHHh
Confidence            7999998 99999999887765 33   46555544332111  11112222 2223345689999999998854 3333


Q ss_pred             hhcccccccccCCCcEEEecCCC----------CHHHHHHHHHHHHhcCCc
Q 027255           74 VFDKGGVLEQICPGKGYIDMSTV----------DHETSIKISRAITSKGGH  114 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~st~----------~~~~~~~l~~~~~~~g~~  114 (226)
                      .   ..+.+ ...+.+|||.|+.          -|+.....-+...++|+.
T Consensus        82 ~---~~~~~-~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~~  128 (146)
T d1t4ba1          82 Y---PKLRE-SGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIR  128 (146)
T ss_dssp             H---HHHHH-TTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCC
T ss_pred             h---HHHHh-cCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCCc
Confidence            3   22222 1233579999863          355554444444455554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.41  E-value=0.00013  Score=54.87  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=35.4

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      +|-|.| .|.+|..+|+.|++.|++|++.+|++++.+.+.+
T Consensus        25 ~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~   65 (191)
T d1luaa1          25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD   65 (191)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence            567777 6999999999999999999999999998877654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.39  E-value=0.00062  Score=50.23  Aligned_cols=73  Identities=18%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccCC-------HHHHh-----hhCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGS-------PAEVI-----KKCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s-------~~~~~-----~~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.|+..+-+       .....     ...|++|.|+..+.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~  110 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQ  110 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHH
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecccch
Confidence            68999999999999999999997 6888999999998888888653221       11122     23688888887766


Q ss_pred             HHHHHh
Q 027255           69 AALSVV   74 (226)
Q Consensus        69 ~~~~v~   74 (226)
                      .+++.+
T Consensus       111 ~~~~a~  116 (174)
T d1e3ia2         111 TLKAAV  116 (174)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.34  E-value=0.00018  Score=52.24  Aligned_cols=65  Identities=11%  Similarity=0.086  Sum_probs=47.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCch--hHHHHH----HC------CCcccCCHHHHhhhCCeE
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLS--KCDELV----AH------GATVGGSPAEVIKKCTIT   60 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~~--~~~~l~----~~------g~~~~~s~~~~~~~advv   60 (226)
                      |||+|||+ |.+|..+|..|+..+.       ++.++|.+..  +.+.+.    ..      ......+..+..+++|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            69999995 9999999999986442       4777877554  333332    11      234567788999999999


Q ss_pred             EEecC
Q 027255           61 IGMLA   65 (226)
Q Consensus        61 i~~~p   65 (226)
                      +++..
T Consensus        84 Vitag   88 (154)
T d5mdha1          84 ILVGS   88 (154)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            99863

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.34  E-value=0.00088  Score=49.31  Aligned_cols=73  Identities=16%  Similarity=0.141  Sum_probs=53.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccCC-------HHHHhh-----hCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGS-------PAEVIK-----KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s-------~~~~~~-----~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.|+..+-+       ..+..+     ..|++|.++....
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~~  109 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIE  109 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCch
Confidence            58999999999999999988886 6999999999999998888764321       122221     3577777776655


Q ss_pred             HHHHHh
Q 027255           69 AALSVV   74 (226)
Q Consensus        69 ~~~~v~   74 (226)
                      ..++.+
T Consensus       110 ~~~~~~  115 (174)
T d1p0fa2         110 TMMNAL  115 (174)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.27  E-value=0.00037  Score=50.97  Aligned_cols=86  Identities=10%  Similarity=0.058  Sum_probs=59.6

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCCCccc-----CCHHHHhh------hCCeEEEecCCHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK------KCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~~~-----~s~~~~~~------~advvi~~~p~~~   68 (226)
                      +|.|+|+ |.+|...++.+...| .+|+++++++++.+.+.+.|+..+     .++.+.+.      ..|+||-|+....
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~  109 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEK  109 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHH
T ss_pred             EEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccch
Confidence            6899995 999999888888888 589999999999988888876332     22222221      2688888887755


Q ss_pred             HHHHHhhcccccccccCCCcEEEecC
Q 027255           69 AALSVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        69 ~~~~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      .++..+       ..++++..++..+
T Consensus       110 ~~~~a~-------~~l~~~G~iv~~G  128 (170)
T d1jvba2         110 TLSVYP-------KALAKQGKYVMVG  128 (170)
T ss_dssp             HHTTGG-------GGEEEEEEEEECC
T ss_pred             HHHhhh-------hhcccCCEEEEec
Confidence            554443       4455555555544

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.25  E-value=0.0013  Score=48.47  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCC-CeEE-EEcCCchh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG-FKVT-VWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~-~~dr~~~~   35 (226)
                      ||||-|.|.+|+.+.+.+..++ .+|. +.++++..
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~   38 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDF   38 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSH
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHH
Confidence            7999999999999999988765 5655 44666543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.22  E-value=0.0014  Score=48.33  Aligned_cols=73  Identities=19%  Similarity=0.244  Sum_probs=54.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccC------C-HHHHh-----hhCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG------S-PAEVI-----KKCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~------s-~~~~~-----~~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.|+..+-      + ..+..     ...|++|.++..+.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~  111 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLE  111 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCHH
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCchH
Confidence            58999999999999999999995 799999999999988888875321      1 11111     23777777776655


Q ss_pred             HHHHHh
Q 027255           69 AALSVV   74 (226)
Q Consensus        69 ~~~~v~   74 (226)
                      ..+..+
T Consensus       112 ~~~~a~  117 (176)
T d1d1ta2         112 TMIDAL  117 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00035  Score=54.37  Aligned_cols=114  Identities=15%  Similarity=0.123  Sum_probs=72.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~   70 (226)
                      +|.|||+|.+|+.++.+|++.|. +++++|.+.=....+.++        |-..+....+.+.  +.++-+...+....-
T Consensus        32 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~~~~  111 (247)
T d1jw9b_          32 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDD  111 (247)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCH
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            79999999999999999999997 688998665444444433        2222222222222  356666666532111


Q ss_pred             HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      ....       ..+....+++|++.. ......+.+.+.+.++.++.+.+.+.
T Consensus       112 ~~~~-------~~~~~~divid~~d~-~~~~~~in~~~~~~~ip~i~g~~~~~  156 (247)
T d1jw9b_         112 AELA-------ALIAEHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAIRM  156 (247)
T ss_dssp             HHHH-------HHHHTSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEEBT
T ss_pred             cccc-------ccccccceeeeccch-hhhhhhHHHHHHHhCCCccccccccc
Confidence            1111       222345678887654 56666788888888999988766553

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.20  E-value=0.00038  Score=51.12  Aligned_cols=73  Identities=15%  Similarity=0.099  Sum_probs=51.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCCCccc----CC-HHHHhh-----hCCeEEEecCCHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVG----GS-PAEVIK-----KCTITIGMLADPAAA   70 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~~~----~s-~~~~~~-----~advvi~~~p~~~~~   70 (226)
                      +|.|+|+|.+|...++.+...| ..|++.++++++.+.+.+.|+..+    .+ .++..+     ..|+||.++.....+
T Consensus        35 ~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~  114 (172)
T d1h2ba2          35 YVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATV  114 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHH
T ss_pred             EEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcchHH
Confidence            5889999999999888887777 467889999999988888775421    11 122222     267777777765555


Q ss_pred             HHHh
Q 027255           71 LSVV   74 (226)
Q Consensus        71 ~~v~   74 (226)
                      +..+
T Consensus       115 ~~a~  118 (172)
T d1h2ba2         115 DYTP  118 (172)
T ss_dssp             HHGG
T ss_pred             HHHH
Confidence            5444

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.19  E-value=0.00014  Score=56.57  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |+|.|||.|.-|...|..|+++|++|+++++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            8999999999999999999999999999988643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.15  E-value=0.00021  Score=54.82  Aligned_cols=33  Identities=33%  Similarity=0.594  Sum_probs=30.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      +||.|||.|.+|...|..|+++|++|++++|+.
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            379999999999999999999999999999864

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.15  E-value=0.00035  Score=51.85  Aligned_cols=89  Identities=12%  Similarity=0.125  Sum_probs=56.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhC-CCeEE-EEcCC----c-hhHHHHHHC--C-----CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRT----L-SKCDELVAH--G-----ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~----~-~~~~~l~~~--g-----~~~~~s~~~~~~~advvi~~~p   65 (226)
                      |||+|||+ |..|..+.+.|..+ .+++. ++.+.    . ++.......  +     .....+......++|++|+|+|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            58999995 99999999999987 56654 33322    1 122222111  1     1122344445578999999998


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +....+ ..   .   .....+..+||.|.-
T Consensus        82 ~~~s~~-~~---~---~~~~~~~~vIDlSad  105 (179)
T d2g17a1          82 HEVSHD-LA---P---QFLQAGCVVFDLSGA  105 (179)
T ss_dssp             HHHHHH-HH---H---HHHHTTCEEEECSST
T ss_pred             chhHHH-Hh---h---hhhhcCceeeccccc
Confidence            854433 33   1   334578899999974

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.05  E-value=0.00064  Score=53.19  Aligned_cols=82  Identities=15%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             CeEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEE--ecCCHHHHHHHhhc
Q 027255            1 MEVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG--MLADPAAALSVVFD   76 (226)
Q Consensus         1 m~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~--~~p~~~~~~~v~~~   76 (226)
                      +||.+| |. +.+|.++|+.|++.|++|.+.+|++++.+++.+.       +.+.  ..+++.+  =+.+.+.++.++  
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------i~~~--g~~~~~~~~Dv~~~~~v~~~~--   69 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASE-------INQA--GGHAVAVKVDVSDRDQVFAAV--   69 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTSHHHHHHHH--
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeeCCCHHHHHHHH--
Confidence            578777 54 6799999999999999999999999887765431       1110  1122222  244556666666  


Q ss_pred             ccccccccCCCcEEEecC
Q 027255           77 KGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~s   94 (226)
                       +.+.+...+=.++|+..
T Consensus        70 -~~~~~~~g~iDilVnnA   86 (255)
T d1gega_          70 -EQARKTLGGFDVIVNNA   86 (255)
T ss_dssp             -HHHHHHTTCCCEEEECC
T ss_pred             -HHHHHHhCCccEEEecc
Confidence             44444443334566543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.04  E-value=0.00031  Score=54.30  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +||.|||.|.-|..+|..|+++|++|++++++++
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5899999999999999999999999999998765

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.99  E-value=0.0012  Score=51.35  Aligned_cols=108  Identities=14%  Similarity=0.147  Sum_probs=66.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEc-CC----------chhHHH------------HHH-CCCcccCCHHHHhh-
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWN-RT----------LSKCDE------------LVA-HGATVGGSPAEVIK-   55 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~d-r~----------~~~~~~------------l~~-~g~~~~~s~~~~~~-   55 (226)
                      .+|.|-|+|++|+..|+.|.+.|.+|+.++ .+          .+.+.+            +.. .+.....+++++.+ 
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  111 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKL  111 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhccc
Confidence            479999999999999999999999987553 22          122211            111 14444455555543 


Q ss_pred             hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .||+++-|-.......+       -.+.+ +-++|+...+.. .+.+ -.+.+.++|+.|+.-
T Consensus       112 ~~DIliPcA~~~~I~~~-------~a~~i-~ak~IvegAN~p-~t~~-a~~~L~~rgI~~~PD  164 (242)
T d1v9la1         112 DVDIFVPAAIENVIRGD-------NAGLV-KARLVVEGANGP-TTPE-AERILYERGVVVVPD  164 (242)
T ss_dssp             CCSEEEECSCSSCBCTT-------TTTTC-CCSEEECCSSSC-BCHH-HHHHHHTTTCEEECH
T ss_pred             cccEEeecchhccccHH-------HHHhc-ccCEEEecCCCC-CChh-HHHHHHhCCeEEeCc
Confidence            69999988654322212       22334 346777766542 2222 246788899988654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.99  E-value=0.0009  Score=52.32  Aligned_cols=81  Identities=17%  Similarity=0.170  Sum_probs=52.8

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEE--ecCCHHHHHHHhhcc
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG--MLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~--~~p~~~~~~~v~~~~   77 (226)
                      ||++|  |.+.+|.++|+.|+++|++|.+++|++++++++.+.       +.+.  ..++..+  =+.+.+.++.++   
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------l~~~--g~~~~~~~~Dvs~~~~v~~~~---   70 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE-------LREA--GVEADGRTCDVRSVPEIEALV---   70 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH---
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeecCCHHHHHHHH---
Confidence            67777  557899999999999999999999999887765432       1110  1122222  244666777776   


Q ss_pred             cccccccCCCcEEEecC
Q 027255           78 GGVLEQICPGKGYIDMS   94 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~s   94 (226)
                      +.+.+...+=.++|+..
T Consensus        71 ~~~~~~~g~iDilVnnA   87 (257)
T d2rhca1          71 AAVVERYGPVDVLVNNA   87 (257)
T ss_dssp             HHHHHHTCSCSEEEECC
T ss_pred             HHHHHHhCCCCEEEecc
Confidence            55555443434666653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00046  Score=47.23  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=32.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      .||||||.|..|+-|+....+.|++++++|++++.
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            37999999999999999999999999999998764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.001  Score=51.72  Aligned_cols=83  Identities=13%  Similarity=0.122  Sum_probs=52.6

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+.+| |. +.+|..+|+.|+++|++|++++|++++++++.++       ..+.-.++-.+..=+.+.+.++..+   +.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~~~~~~~~~~~Dvs~~~~v~~~~---~~   77 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKGLGAKVHTFVVDCSNREDIYSSA---KK   77 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHH---HH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeeCCCHHHHHHHH---HH
Confidence            34455 65 6699999999999999999999999988876542       1111011222333345666666666   54


Q ss_pred             cccccCCCcEEEecC
Q 027255           80 VLEQICPGKGYIDMS   94 (226)
Q Consensus        80 l~~~l~~g~ivvd~s   94 (226)
                      +.+...+-.++|+..
T Consensus        78 i~~~~g~idilinna   92 (244)
T d1yb1a_          78 VKAEIGDVSILVNNA   92 (244)
T ss_dssp             HHHHTCCCSEEEECC
T ss_pred             HHHHcCCCceeEeec
Confidence            544444455666655

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.94  E-value=0.00011  Score=53.46  Aligned_cols=88  Identities=14%  Similarity=0.137  Sum_probs=54.5

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCe---EEEEcCCchhHHHHHHC--CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVVF   75 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~---V~~~dr~~~~~~~l~~~--g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~   75 (226)
                      ||+|||+ |..|..+.+.|.++.++   +....-+...-+.+...  ........++...+.|+++.++|.....+.+. 
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~~-   81 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYAP-   81 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHHH-
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHHh-
Confidence            7999998 99999999999888653   33333221111111111  11222334455568899999998755443332 


Q ss_pred             cccccccccCCCcEEEecCCC
Q 027255           76 DKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        76 ~~~~l~~~l~~g~ivvd~st~   96 (226)
                            ....++..|||.|.-
T Consensus        82 ------~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          82 ------YAVKAGVVVVDNTSY   96 (154)
T ss_dssp             ------HHHHTTCEEEECSST
T ss_pred             ------hhccccceehhcChh
Confidence                  334578999999964

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.94  E-value=0.0015  Score=48.23  Aligned_cols=63  Identities=13%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCC---C----eEEEEcCCch--hHHHHH----HC------CCcccCCHHHHhhhCCeEE
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNG---F----KVTVWNRTLS--KCDELV----AH------GATVGGSPAEVIKKCTITI   61 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G---~----~V~~~dr~~~--~~~~l~----~~------g~~~~~s~~~~~~~advvi   61 (226)
                      ||.|+|+ |.+|..++-+|+...   .    .++++|....  .++.+.    ..      .....++..+..+++|+||
T Consensus        26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvVv  105 (175)
T d7mdha1          26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWAL  105 (175)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceEE
Confidence            6999996 999999999998743   2    5777777654  223222    11      2455788899999999999


Q ss_pred             Eec
Q 027255           62 GML   64 (226)
Q Consensus        62 ~~~   64 (226)
                      +..
T Consensus       106 i~a  108 (175)
T d7mdha1         106 LIG  108 (175)
T ss_dssp             ECC
T ss_pred             Eee
Confidence            986

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00046  Score=51.30  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      +||.|||.|..|...|..|+++||+|++|++++..
T Consensus        44 k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          44 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             cEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            47999999999999999999999999999998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.91  E-value=0.0038  Score=45.35  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=49.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccC-------CHHHHh-----hhCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG-------SPAEVI-----KKCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~-------s~~~~~-----~~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...++.+...|. .|++.++++++.+...+.|+..+-       +..+..     ...|+||.++..+.
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~~  110 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVK  110 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCHH
Confidence            58899999999988888888885 688889999998888887864321       122222     12566666665544


Q ss_pred             HHHHH
Q 027255           69 AALSV   73 (226)
Q Consensus        69 ~~~~v   73 (226)
                      ..+..
T Consensus       111 ~~~~~  115 (176)
T d2fzwa2         111 VMRAA  115 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0018  Score=50.15  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=51.8

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+.+| | .+.+|.++|+.|++.|++|.+++|++++++++.+.          .-.++..+..=+.+.+.+++++   +.
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~---~~   71 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY----------LGANGKGLMLNVTDPASIESVL---EK   71 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH---HH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH----------hCCCCcEEEEEecCHHHhhhhh---hh
Confidence            45566 4 57899999999999999999999999988776542          1112222222245666676666   44


Q ss_pred             cccccCCCcEEEecC
Q 027255           80 VLEQICPGKGYIDMS   94 (226)
Q Consensus        80 l~~~l~~g~ivvd~s   94 (226)
                      +.+...+=.++|+..
T Consensus        72 ~~~~~g~iDilVnnA   86 (243)
T d1q7ba_          72 IRAEFGEVDILVNNA   86 (243)
T ss_dssp             HHHHTCSCSEEEECC
T ss_pred             hhcccCCcceehhhh
Confidence            444443334556553

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.87  E-value=0.00067  Score=51.12  Aligned_cols=64  Identities=14%  Similarity=0.071  Sum_probs=46.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEE--EcCCchhHHHHHHCCCc-------ccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTV--WNRTLSKCDELVAHGAT-------VGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~--~dr~~~~~~~l~~~g~~-------~~~s~~~~~~~advvi~~~p   65 (226)
                      ++|.|.| .|.+|+.+++.|+++||+|.+  ..|++++...+.. ++.       -..+..++++++|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEEe
Confidence            4799998 599999999999999987544  5688877665543 222       12334566778999987763

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=0.0014  Score=50.93  Aligned_cols=80  Identities=14%  Similarity=0.069  Sum_probs=51.9

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+.+| |. +.+|.++|+.|+++|++|.+.+|++++.+.+.+.-          -..+..+-.=+.+.+.+++++   +.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~---~~   73 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----------ADAARYVHLDVTQPAQWKAAV---DT   73 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------GGGEEEEECCTTCHHHHHHHH---HH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------hCcceEEEeecCCHHHHHHHH---HH
Confidence            45555 54 77999999999999999999999999887765431          111212222245666777666   44


Q ss_pred             cccccCCCcEEEecC
Q 027255           80 VLEQICPGKGYIDMS   94 (226)
Q Consensus        80 l~~~l~~g~ivvd~s   94 (226)
                      +.+...+=.++|+..
T Consensus        74 ~~~~~g~idilinnA   88 (244)
T d1nffa_          74 AVTAFGGLHVLVNNA   88 (244)
T ss_dssp             HHHHHSCCCEEEECC
T ss_pred             HHHHhCCCeEEEECC
Confidence            444443445666654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.86  E-value=0.0045  Score=45.12  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCCCcccCC-------HHHHh-----hhCCeEEEecCCHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVGGS-------PAEVI-----KKCTITIGMLADPA   68 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~s-------~~~~~-----~~advvi~~~p~~~   68 (226)
                      +|.|+|+|.+|...+..+...| .+|++.++++++.+...+.|+..+-+       ..+..     ...|++|.++..+.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~  110 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLD  110 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCchh
Confidence            5899999999999999999988 57999999999999888887643211       11221     13677777776654


Q ss_pred             HHHHHh
Q 027255           69 AALSVV   74 (226)
Q Consensus        69 ~~~~v~   74 (226)
                      ..+..+
T Consensus       111 ~~~~a~  116 (176)
T d2jhfa2         111 TMVTAL  116 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0022  Score=46.88  Aligned_cols=44  Identities=23%  Similarity=0.127  Sum_probs=38.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|+|. |.+|....+.+...|.+|++.++++++.+.+.+.|+.
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~   75 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH   75 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred             EEEEEeccccccccccccccccCcccccccccccccccccccCcc
Confidence            6889995 9999988888888999999999999888888777764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.82  E-value=0.00058  Score=50.42  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSK   35 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~   35 (226)
                      .||.|||.|..|...|..|.++|+ +|+++++++..
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            489999999999999999999998 59999987654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.81  E-value=0.0011  Score=52.09  Aligned_cols=66  Identities=23%  Similarity=0.194  Sum_probs=47.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchh--------HHHHHHCCCccc-------CCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK--------CDELVAHGATVG-------GSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~--------~~~l~~~g~~~~-------~s~~~~~~~advvi~~~   64 (226)
                      +||.|+|. |.+|+.+++.|+++||+|++..|++..        ...+...++...       .+..+...+++.++.+.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~   83 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   83 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence            58999995 999999999999999999999987542        222333454432       22345667789888887


Q ss_pred             CC
Q 027255           65 AD   66 (226)
Q Consensus        65 p~   66 (226)
                      +.
T Consensus        84 ~~   85 (312)
T d1qyda_          84 AG   85 (312)
T ss_dssp             CC
T ss_pred             hh
Confidence            54

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0015  Score=50.92  Aligned_cols=78  Identities=12%  Similarity=0.115  Sum_probs=50.0

Q ss_pred             EEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL   81 (226)
Q Consensus         3 IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~   81 (226)
                      +-|.| .+.+|.++|+.|++.|++|.+.+|++++.+.+.+..-.           +..+..=+.+.+.++.++   +.+.
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-----------~~~~~~Dvs~~~~v~~~~---~~~~   74 (250)
T d1ydea1           9 VVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG-----------AVFILCDVTQEDDVKTLV---SETI   74 (250)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT-----------EEEEECCTTSHHHHHHHH---HHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC-----------CeEEEccCCCHHHHHHHH---HHHH
Confidence            33445 48999999999999999999999999998887654311           111222244556666666   4444


Q ss_pred             cccCCCcEEEecC
Q 027255           82 EQICPGKGYIDMS   94 (226)
Q Consensus        82 ~~l~~g~ivvd~s   94 (226)
                      +...+=.++|+..
T Consensus        75 ~~~g~iDilVnnA   87 (250)
T d1ydea1          75 RRFGRLDCVVNNA   87 (250)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HhcCCCCEEEecc
Confidence            4333334555543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.80  E-value=0.00096  Score=52.05  Aligned_cols=40  Identities=28%  Similarity=0.434  Sum_probs=33.8

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ||.+| |. +.+|.++|+.|+++|++|.+++|++++++++.+
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~   52 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD   52 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            56666 54 789999999999999999999999988876543

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.74  E-value=0.0012  Score=49.01  Aligned_cols=71  Identities=14%  Similarity=0.220  Sum_probs=43.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC-CeEEEE-cC-Cch-hHHHHHHC----C-CcccCCHHHHhhhCCeEEEecCCHHHH
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NR-TLS-KCDELVAH----G-ATVGGSPAEVIKKCTITIGMLADPAAA   70 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~-dr-~~~-~~~~l~~~----g-~~~~~s~~~~~~~advvi~~~p~~~~~   70 (226)
                      +||||||. |..|..+.+.|.++- +++... .+ +.. +.......    . ........+..+++|+||.++|+....
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s~   85 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTTQ   85 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHHH
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchHH
Confidence            48999997 999999999999863 455544 22 222 22222111    1 111223344567899999999996544


Q ss_pred             H
Q 027255           71 L   71 (226)
Q Consensus        71 ~   71 (226)
                      +
T Consensus        86 ~   86 (183)
T d2cvoa1          86 E   86 (183)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.00045  Score=50.91  Aligned_cols=86  Identities=10%  Similarity=0.055  Sum_probs=58.4

Q ss_pred             CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcc------------cCCHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV------------GGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~------------~~s~~~~~~~advvi~~~p~   66 (226)
                      ++|.|||-+. .|++||..|+++|..|+.++.+....  +... ....            .+.+.+....+|+|+++++.
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~  107 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPS  107 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--cccccceeeeeeccccccccchhHHhhccccCCEEEEccCC
Confidence            4689999775 59999999999999999998653221  0000 0010            11256667789999999988


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMSTV   96 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st~   96 (226)
                      +...   +   .  .+.+++|.++||.+..
T Consensus       108 p~~~---i---~--~d~ik~GavvIDvGi~  129 (171)
T d1edza1         108 ENYK---F---P--TEYIKEGAVCINFACT  129 (171)
T ss_dssp             TTCC---B---C--TTTSCTTEEEEECSSS
T ss_pred             Cccc---c---C--hhhcccCceEeecccc
Confidence            5420   1   0  1456799999998764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.72  E-value=0.0015  Score=47.82  Aligned_cols=46  Identities=22%  Similarity=0.130  Sum_probs=39.2

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG   47 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~   47 (226)
                      +|.|.|. |.+|....+.+...|.+|++.++++++.+.+.+.|+..+
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~   76 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEA   76 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEE
T ss_pred             EEEEEeccccchhhhhhhhccccccccccccccccccccccccccee
Confidence            5788895 999998888888889999999999999998888886543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.69  E-value=0.00081  Score=52.08  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      +||.|||.|.-|...|..|+++|++|+++++++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            589999999999999999999999999998764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.67  E-value=0.0028  Score=49.00  Aligned_cols=76  Identities=18%  Similarity=0.182  Sum_probs=49.6

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      +-|.|. +.+|.++|+.|++.|++|.+.+|++++.+++.+. ++             ..+..=+.+.+.+++++   +.+
T Consensus         8 ~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~-------------~~~~~Dv~~~~~v~~~~---~~~   71 (242)
T d1ulsa_           8 VLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGA-------------HPVVMDVADPASVERGF---AEA   71 (242)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTC-------------EEEECCTTCHHHHHHHH---HHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-------------eEEEEecCCHHHHHHHH---HHH
Confidence            344454 7799999999999999999999999988877653 22             12222244666666665   444


Q ss_pred             ccccCCCcEEEecC
Q 027255           81 LEQICPGKGYIDMS   94 (226)
Q Consensus        81 ~~~l~~g~ivvd~s   94 (226)
                      .+...+=.++|+..
T Consensus        72 ~~~~g~iDilVnnA   85 (242)
T d1ulsa_          72 LAHLGRLDGVVHYA   85 (242)
T ss_dssp             HHHHSSCCEEEECC
T ss_pred             HHhcCCceEEEECC
Confidence            44433334555543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.67  E-value=0.00082  Score=52.30  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=29.6

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |.|||.|.+|...|..|+++|++|+++++++
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            9999999999999999999999999999864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00082  Score=42.81  Aligned_cols=35  Identities=20%  Similarity=0.145  Sum_probs=31.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      ++|||||.|..|+-|+..-.+-|+++.++|.+++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            47999999999999999999999999999987654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.63  E-value=0.0022  Score=50.18  Aligned_cols=40  Identities=18%  Similarity=0.185  Sum_probs=32.8

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+.+| |. +.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   50 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLT   50 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34444 55 679999999999999999999999998877543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.63  E-value=0.0016  Score=50.93  Aligned_cols=40  Identities=20%  Similarity=0.350  Sum_probs=32.8

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+.+| |. +.+|.++|+.|+++|++|.+++|++++++++.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEA   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34444 55 679999999999999999999999988776543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.61  E-value=0.0028  Score=49.96  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=48.8

Q ss_pred             EEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            3 VGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         3 IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      +.+| | .+.+|.++|+.|++.|++|.+.+|++++++++.+.          .-.++..+..-+.+.+.++..+   +.+
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~~~~~~---~~~   73 (276)
T d1bdba_           7 AVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETD----------HGDNVLGIVGDVRSLEDQKQAA---SRC   73 (276)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH---HHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------cCCCeeEEecccccHHHHHHHH---HHH
Confidence            4444 5 48999999999999999999999999888776442          1112222222344555566555   333


Q ss_pred             ccccCCCcEEEec
Q 027255           81 LEQICPGKGYIDM   93 (226)
Q Consensus        81 ~~~l~~g~ivvd~   93 (226)
                      .+...+=.++|+.
T Consensus        74 ~~~~g~idilvnn   86 (276)
T d1bdba_          74 VARFGKIDTLIPN   86 (276)
T ss_dssp             HHHHSCCCEEECC
T ss_pred             HHHhCCccccccc
Confidence            3433333455544

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0022  Score=49.98  Aligned_cols=40  Identities=18%  Similarity=0.280  Sum_probs=33.7

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   53 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVD   53 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45666  55889999999999999999999999988776543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.57  E-value=0.0029  Score=49.32  Aligned_cols=79  Identities=16%  Similarity=0.221  Sum_probs=50.1

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      |+.+| | .+.+|.++|+.|++.|++|.+.+|+.++++++.+. |.           ++..+..=+.+.+.+++++   +
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-----------~~~~~~~Dvt~~~~v~~~~---~   71 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGP-----------AACAIALDVTDQASIDRCV---A   71 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT-----------TEEEEECCTTCHHHHHHHH---H
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------ceEEEEeeCCCHHHHHHHH---H
Confidence            45555 4 48899999999999999999999999988776543 21           1111222234666666666   4


Q ss_pred             ccccccCCCcEEEecC
Q 027255           79 GVLEQICPGKGYIDMS   94 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~s   94 (226)
                      .+.+...+=.++|+..
T Consensus        72 ~~~~~~g~iDilVnnA   87 (256)
T d1k2wa_          72 ELLDRWGSIDILVNNA   87 (256)
T ss_dssp             HHHHHHSCCCEEEECC
T ss_pred             HHHHHhCCccEEEeec
Confidence            4444333334555543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.56  E-value=0.0015  Score=44.66  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +|.|||.|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            799999999999999999999999999987765

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.56  E-value=0.0026  Score=49.59  Aligned_cols=79  Identities=11%  Similarity=-0.031  Sum_probs=50.4

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL   81 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~   81 (226)
                      +-|.|. +.+|.++|+.|+++|++|.+.+|++++.+++.+.-          -.++..+..=+.+.+.+++++   +.+.
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~---~~~~   74 (254)
T d1hdca_           8 VIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----------GDAARYQHLDVTIEEDWQRVV---AYAR   74 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------GGGEEEEECCTTCHHHHHHHH---HHHH
T ss_pred             EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------CCceEEEEcccCCHHHHHHHH---HHHH
Confidence            445555 67999999999999999999999999887765431          111222222245666676666   4444


Q ss_pred             cccCCCcEEEecC
Q 027255           82 EQICPGKGYIDMS   94 (226)
Q Consensus        82 ~~l~~g~ivvd~s   94 (226)
                      +...+=.++|+..
T Consensus        75 ~~~g~iDilVnnA   87 (254)
T d1hdca_          75 EEFGSVDGLVNNA   87 (254)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHcCCccEEEecC
Confidence            4333334566554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.55  E-value=0.0049  Score=48.05  Aligned_cols=83  Identities=17%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEe--cCCHHHHHHHhhcc
Q 027255            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~--~p~~~~~~~v~~~~   77 (226)
                      |+.+| |. +.+|.++|+.|++.|++|.+.+|++++.++..+.       ..+...+..++.+.  +.+.+.++.++   
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~~~Dvt~~~~v~~~~---   74 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEAYV---   74 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHHHH---
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhhCCCCeEEEEeccCCCHHHHHHHH---
Confidence            44555 54 6799999999999999999999999987765431       11111123343332  34566666666   


Q ss_pred             cccccccCCCcEEEecC
Q 027255           78 GGVLEQICPGKGYIDMS   94 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~s   94 (226)
                      +.+.+...+=.++|+..
T Consensus        75 ~~~~~~~G~iDiLVnnA   91 (258)
T d1iy8a_          75 TATTERFGRIDGFFNNA   91 (258)
T ss_dssp             HHHHHHHSCCSEEEECC
T ss_pred             HHHHHHhCCCCEEEECC
Confidence            44444443334566643

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0048  Score=53.22  Aligned_cols=117  Identities=12%  Similarity=0.167  Sum_probs=73.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~   69 (226)
                      .+|.|||+|..|..++++|+..|. +++++|.+.=....+...        |-..+....+.+.  +.++-+..+..  .
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~--~  103 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE--S  103 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESS--C
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcC--C
Confidence            379999999999999999999996 699998766555555543        2111111222222  23443333322  2


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS  123 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~  123 (226)
                      ..++..   .-...+..-.+||++ ...+.....+.+.+.++++.++.+-+.|-
T Consensus       104 ~~~~~~---~~~~~~~~~dvVv~~-~~~~~~~~~l~~~c~~~~ip~i~~~~~G~  153 (529)
T d1yova1         104 PENLLD---NDPSFFCRFTVVVAT-QLPESTSLRLADVLWNSQIPLLICRTYGL  153 (529)
T ss_dssp             HHHHHH---SCGGGGGGCSEEEEE-SCCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             chhhhh---hHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence            223331   111233344677765 45777888899999999999998876654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.53  E-value=0.0032  Score=49.14  Aligned_cols=40  Identities=25%  Similarity=0.190  Sum_probs=33.6

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ++-|.| .+.+|.++|+.|+++|++|.+.+|++++++++.+
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~   48 (258)
T d1ae1a_           8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE   48 (258)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            455666 5889999999999999999999999988776543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.52  E-value=0.0026  Score=49.53  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+.+| | .+.+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~   48 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA   48 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45555 4 5779999999999999999999999998877654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.51  E-value=0.006  Score=47.29  Aligned_cols=80  Identities=16%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEE--ecCCHHHHHHHhhcc
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG--MLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~--~~p~~~~~~~v~~~~   77 (226)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++.+++.+.          +-...++.++  =+.+.+.+++++   
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~~Dv~~~~~v~~~~---   73 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKS----------VGTPDQIQFFQHDSSDEDGWTKLF---   73 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCCTTTEEEEECCTTCHHHHHHHH---
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hCCCCcEEEEEccCCCHHHHHHHH---
Confidence            45555  457899999999999999999999999988776542          0001122222  245666666666   


Q ss_pred             cccccccCCCcEEEecC
Q 027255           78 GGVLEQICPGKGYIDMS   94 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~s   94 (226)
                      +.+.+...+=.++|+..
T Consensus        74 ~~~~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          74 DATEKAFGPVSTLVNNA   90 (251)
T ss_dssp             HHHHHHHSSCCEEEECC
T ss_pred             HHHHHHhCCceEEEecc
Confidence            44444443334666654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.50  E-value=0.00099  Score=52.54  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      .||.|||.|..|...|..|+++|++|+++++++.
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3799999999999999999999999999998653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.0017  Score=44.79  Aligned_cols=33  Identities=30%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      ++.|||.|.+|.-+|..|.+.|.+|+++.+++.
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            789999999999999999999999999988764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0022  Score=51.57  Aligned_cols=65  Identities=25%  Similarity=0.434  Sum_probs=46.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-C-------CcccCCHHH-HhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G-------ATVGGSPAE-VIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g-------~~~~~s~~~-~~~~advvi~~~p   65 (226)
                      |||.|.|. |.+|+.+++.|+++|| +|++.|+.......+... +       ++-..+..+ +.+++|+|+-+..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            89999975 9999999999999995 899998876655544332 1       111122233 6678999998764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.49  E-value=0.00018  Score=54.98  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=24.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKV   26 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V   26 (226)
                      |||.|||.|.+|...|..|+++|++|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCc
Confidence            89999999999999999999999753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.49  E-value=0.0025  Score=49.56  Aligned_cols=66  Identities=20%  Similarity=0.344  Sum_probs=47.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhH---------HHHHHCCCccc-------CCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC---------DELVAHGATVG-------GSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~---------~~l~~~g~~~~-------~s~~~~~~~advvi~~   63 (226)
                      +||.|+|. |.+|+.+++.|.++||+|++.+|++...         ..+...++.+.       .+..+..+.++.++.+
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~~   83 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIST   83 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeeec
Confidence            58999996 9999999999999999999999876542         12222343321       2244566788888877


Q ss_pred             cCC
Q 027255           64 LAD   66 (226)
Q Consensus        64 ~p~   66 (226)
                      ...
T Consensus        84 ~~~   86 (307)
T d1qyca_          84 VGS   86 (307)
T ss_dssp             CCG
T ss_pred             ccc
Confidence            643

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.0042  Score=45.30  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNG   23 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G   23 (226)
                      +|+++|+|.+|+.+++.|.++.
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~   27 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMK   27 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhH
Confidence            6999999999999999998754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.47  E-value=0.0068  Score=45.17  Aligned_cols=45  Identities=22%  Similarity=0.160  Sum_probs=37.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATV   46 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~   46 (226)
                      +|.|+|+|.+|...+..+...|. +|++.|+++++.+...+.|+..
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~   73 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI   73 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEE
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccE
Confidence            68899999999877777766776 7889999999998888887644

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0042  Score=48.36  Aligned_cols=40  Identities=33%  Similarity=0.558  Sum_probs=33.2

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+.+| | .+.+|.++|+.|+++|++|++++|++++++++.+
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~   52 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA   52 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34444 4 5889999999999999999999999998877643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.45  E-value=0.0019  Score=44.52  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      .+|.|||.|.+|.-+|..|.+.|++|+++++.+.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            3799999999999999999999999999988765

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0028  Score=51.01  Aligned_cols=31  Identities=32%  Similarity=0.525  Sum_probs=29.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      |||.|+|. |.+|+.+++.|++.||+|++.||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            99999975 99999999999999999999976

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.44  E-value=0.0014  Score=52.75  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      +||.|||+|.-|...|..|+++|++|++++++..-
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            58999999999999999999999999999987653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.44  E-value=0.0015  Score=50.39  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~   34 (226)
                      |+|.|||.|.-|..+|..|.++| ++|.+++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            68999999999999999999999 58999998765

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0021  Score=43.89  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +|.|||.|..|.-+|..|.+.|++|++++|.+.
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            799999999999999999999999999998764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.39  E-value=0.0021  Score=44.04  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      .+|.|||.|..|.-+|..|.+.|.+|+++.|.+.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            3799999999999999999999999999998653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0098  Score=45.82  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~   42 (226)
                      +-|.|. +.+|.++|+.|++.|++|.+.+|++++++++.++
T Consensus        10 ~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~   50 (244)
T d1pr9a_          10 VLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE   50 (244)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence            444454 7899999999999999999999999998887654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.37  E-value=0.0035  Score=49.56  Aligned_cols=39  Identities=21%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      |+.+|  |.+.+|.++|+.|+++|++|++.+|+.++.++..
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~   66 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATA   66 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            56666  6799999999999999999999999998876654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.37  E-value=0.0013  Score=51.54  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      +|.|||+|..|..+|..|.++|++|.++++.++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4999999999999999999999999999998753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.35  E-value=0.0017  Score=48.89  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=30.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~   34 (226)
                      ++|.|||.|.-|...|..|.++|+ +|+++++++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            479999999999999999999995 7999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.35  E-value=0.011  Score=42.82  Aligned_cols=45  Identities=24%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATV   46 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~   46 (226)
                      +|.|+|+|.+|...+..+...|- +|++.++++++.+...+.|+..
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~   76 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD   76 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcE
Confidence            58899999999999988888775 6999999999999988888643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.34  E-value=0.0026  Score=43.79  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=31.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +|.|||.|..|.-+|..|.+.|++|+++++++.
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            689999999999999999999999999998765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.0038  Score=48.52  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=49.3

Q ss_pred             eEEE-Eec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEE--ecCCHHHHHHHhhcc
Q 027255            2 EVGF-LGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG--MLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~Igv-IG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~--~~p~~~~~~~v~~~~   77 (226)
                      |+.+ .|. +.+|.++|+.|++.|++|.+.+|+.++.++..+.       +.+. ...+++.+  =+.+.+.++.++   
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------l~~~-~g~~~~~~~~Dv~~~~~v~~~~---   74 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK-------LTEK-YGVETMAFRCDVSNYEEVKKLL---   74 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHH-HCCCEEEEECCTTCHHHHHHHH---
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHH-hCCcEEEEEccCCCHHHHHHHH---
Confidence            3444 454 7799999999999999999999999887664321       1111 01233322  234556666665   


Q ss_pred             cccccccCCCcEEEecC
Q 027255           78 GGVLEQICPGKGYIDMS   94 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~s   94 (226)
                      +.+.+...+=.++|+..
T Consensus        75 ~~~~~~~g~iDiLVnnA   91 (251)
T d1vl8a_          75 EAVKEKFGKLDTVVNAA   91 (251)
T ss_dssp             HHHHHHHSCCCEEEECC
T ss_pred             HHHHHHcCCCCEEEECC
Confidence            44444433334555543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.30  E-value=0.0034  Score=50.66  Aligned_cols=66  Identities=15%  Similarity=0.103  Sum_probs=47.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHH--HHHHC-CCcc-----cC---CHHHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD--ELVAH-GATV-----GG---SPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~--~l~~~-g~~~-----~~---s~~~~~~~advvi~~~p~   66 (226)
                      ++|.|+|. |.+|+.+++.|++.||+|++..|++++..  .+... |+++     .+   ..+.+...+|+++...+.
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            47999985 99999999999999999999998877543  33332 4332     11   133456778888877653

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0092  Score=40.65  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=76.7

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHhhccc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ||.+.|. |.-|+-.++.+.+.|-+|. ...+|.+... .-.|+.++.+.+|+++.  +|.-++.+|.+.+...++   +
T Consensus         8 rVlvQGiTG~~G~~ht~~m~~yGT~vV-aGVtPgkgG~-~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~---E   82 (119)
T d2nu7a1           8 KVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGT-THLGLPVFNTVREAVAATGATASVIYVPAPFCKDSIL---E   82 (119)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTE-EETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHH---H
T ss_pred             cEEEEcCCCcHHHHHHHHHHHhCCceE-EEEccCCCCc-ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHH---H
Confidence            6889998 9999999999999998754 3344444211 02478889999998874  899999999877666666   3


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      .+-+.+  ..+++-+--+.+.++.++.+.+++++..++
T Consensus        83 Ai~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~li  118 (119)
T d2nu7a1          83 AIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMI  118 (119)
T ss_dssp             HHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence            332222  223333334788899999999988887765

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.29  E-value=0.0017  Score=49.27  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=31.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSK   35 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~   35 (226)
                      +||+|||.|.-|...|..|.++  ||+|++|++.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4899999999999999999875  7899999988653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.28  E-value=0.0083  Score=47.60  Aligned_cols=108  Identities=13%  Similarity=0.118  Sum_probs=65.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEc-----------CCchhHHHHHHCCCcc------cCCHHHHh-hhCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWN-----------RTLSKCDELVAHGATV------GGSPAEVI-KKCTITIG   62 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~d-----------r~~~~~~~l~~~g~~~------~~s~~~~~-~~advvi~   62 (226)
                      ++|.|-|.|++|...|+.|.+.|.+|+.++           .+.+.+.++.......      .-+..++. ..||+++-
T Consensus        37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIliP  116 (293)
T d1hwxa1          37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIP  116 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccEEee
Confidence            379999999999999999999999877553           3445555554432111      11222333 37999888


Q ss_pred             ecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        63 ~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      |--......+       -.+.+ .-++|+...+. |.+. +-.+.+.++|+.|+..
T Consensus       117 aA~~~~I~~~-------~a~~l-~ak~I~EgAN~-P~t~-eA~~~L~~~gI~viPD  162 (293)
T d1hwxa1         117 AASEKQLTKS-------NAPRV-KAKIIAEGANG-PTTP-QADKIFLERNIMVIPD  162 (293)
T ss_dssp             CSSSSCBCTT-------TGGGC-CCSEEECCSSS-CBCH-HHHHHHHHTTCEEECH
T ss_pred             ccccccccHH-------HHHHH-hhCEEeccCCC-CCCc-chHHHHHHCCCEEeCh
Confidence            8643222212       22334 34567766553 3222 3356788899988754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.011  Score=46.84  Aligned_cols=85  Identities=19%  Similarity=0.216  Sum_probs=51.2

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEe--cCCHHHHHHHhhc
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGM--LADPAAALSVVFD   76 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~--~p~~~~~~~v~~~   76 (226)
                      |+.+| | .+.+|.++|+.|++.|++|.+.+|++++.+...+. ......     ..+.+++.+.  +.+.+.++.++  
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-----~~~~~~~~~~~Dvs~~~~v~~~~--   85 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-----TKQARVIPIQCNIRNEEEVNNLV--   85 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-----TCCCCEEEEECCTTCHHHHHHHH--
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-----ccCceEEEEeccCCCHHHHHHHH--
Confidence            34444 4 47799999999999999999999999887665431 000000     0123344333  34566666666  


Q ss_pred             ccccccccCCCcEEEecC
Q 027255           77 KGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        77 ~~~l~~~l~~g~ivvd~s   94 (226)
                       +.+.+...+=.++|+..
T Consensus        86 -~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          86 -KSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             -HHHHHHHSCCCEEEECC
T ss_pred             -HHHHHHhCCeEEEEeec
Confidence             44444443445666654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.26  E-value=0.0029  Score=51.00  Aligned_cols=64  Identities=27%  Similarity=0.263  Sum_probs=48.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC---------------CCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH---------------GATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~---------------g~~~~~s~~~~~~~advvi~~~   64 (226)
                      ++|.|.|. |.+|+.+++.|+++||+|++..|+.++.+.+...               .+.-..+..+++.++|.|+-+.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~a   91 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhhc
Confidence            36888865 9999999999999999999999998877665432               1122234557788899888654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0043  Score=52.09  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=30.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~   34 (226)
                      +||.|||+|.+|..++++|+..|+ +++++|.+.=
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            479999999999999999999997 6999986543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.24  E-value=0.0017  Score=52.68  Aligned_cols=64  Identities=13%  Similarity=0.093  Sum_probs=42.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC-------CcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-------ATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~advvi~~~   64 (226)
                      |||.|.| .|.+|+.+++.|.++||+|++.|+............       +.-.....++.+++|.|+-+.
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            8999997 699999999999999999999986543211111011       111223344556789888655

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.013  Score=45.06  Aligned_cols=107  Identities=15%  Similarity=0.176  Sum_probs=64.9

Q ss_pred             CeEEEEecChhHHHHHHHHH-hCCCeEEEEc-----------CCchhHHHHHHC-C-------CcccCCHHHHhh-hCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWN-----------RTLSKCDELVAH-G-------ATVGGSPAEVIK-KCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~d-----------r~~~~~~~l~~~-g-------~~~~~s~~~~~~-~adv   59 (226)
                      ++|.|-|+|++|...|+.|. +.|..|+..+           .+.+.+..+... +       .+. -+.++... .||+
T Consensus        32 ~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DI  110 (234)
T d1b26a1          32 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGER-ITNEELLELDVDI  110 (234)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEE-ECHHHHHTSCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceecccccee-eccccccccccce
Confidence            47899999999999999997 4688877543           233333333332 2       122 24455555 7999


Q ss_pred             EEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        60 vi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ++-|--......+.+       +.+ .-++|+...... .+. +..+.+.++|+.|+.-
T Consensus       111 ~~PcA~~~~I~~~~a-------~~l-~~~~I~e~AN~p-~t~-~a~~~L~~rgI~~~PD  159 (234)
T d1b26a1         111 LVPAALEGAIHAGNA-------ERI-KAKAVVEGANGP-TTP-EADEILSRRGILVVPD  159 (234)
T ss_dssp             EEECSCTTCBCHHHH-------TTC-CCSEEECCSSSC-BCH-HHHHHHHHTTCEEECH
T ss_pred             eecchhcccccHHHH-------HHh-hhceEeecCCCC-CCH-HHHHHHHHCCeEEech
Confidence            988864433333333       333 235677766532 222 2356788899998755

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0032  Score=43.50  Aligned_cols=33  Identities=18%  Similarity=0.144  Sum_probs=30.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +|.|||.|..|.-+|..|.+.|.+|+++.|++.
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            789999999999999999999999999998753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.20  E-value=0.0032  Score=43.38  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +|.|||.|.+|..+|..|.+.|++|+++++.+.
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            799999999999999999999999999988754

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.19  E-value=0.0096  Score=46.29  Aligned_cols=36  Identities=11%  Similarity=0.061  Sum_probs=29.2

Q ss_pred             eEEEEec-C--hhHHHHHHHHHhCCCeEEEEcCCchhHH
Q 027255            2 EVGFLGL-G--IMGKAISMNLLRNGFKVTVWNRTLSKCD   37 (226)
Q Consensus         2 ~IgvIG~-G--~mG~~~A~~l~~~G~~V~~~dr~~~~~~   37 (226)
                      ++-|.|. |  .+|.++|+.|+++|++|++.+|+++..+
T Consensus         7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~   45 (274)
T d2pd4a1           7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEK   45 (274)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4556675 5  4999999999999999999999865333

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.17  E-value=0.0078  Score=46.87  Aligned_cols=80  Identities=16%  Similarity=0.216  Sum_probs=51.9

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCcccCCHHHHhhhCCeEEE--ecCCHHHHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEVIKKCTITIG--MLADPAAALSV   73 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~~~~~~advvi~--~~p~~~~~~~v   73 (226)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+.    +..          ..++.+.  =+.+.+.++++
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~----------~~~~~~~~~Dvt~~~~v~~~   75 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS----------EQNVNSVVADVTTDAGQDEI   75 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEECCTTSHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----------cCceEEEEccCCCHHHHHHH
Confidence            56666  568999999999999999999999999887765432    211          1112222  24456666666


Q ss_pred             hhcccccccccCCCcEEEecC
Q 027255           74 VFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      +   +.+.+...+=.++|+..
T Consensus        76 ~---~~~~~~~g~iDilvnnA   93 (264)
T d1spxa_          76 L---STTLGKFGKLDILVNNA   93 (264)
T ss_dssp             H---HHHHHHHSCCCEEEECC
T ss_pred             H---HHHHHHhCCCCEeeccc
Confidence            6   44444443445666654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.13  E-value=0.007  Score=44.14  Aligned_cols=43  Identities=19%  Similarity=0.049  Sum_probs=36.1

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|.| .|.+|...++.+...|.+|++..+++++.+.+.+.|+
T Consensus        28 ~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga   71 (183)
T d1pqwa_          28 RVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV   71 (183)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence            577777 4999999998888889999999999988887776664

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0041  Score=48.78  Aligned_cols=84  Identities=13%  Similarity=0.029  Sum_probs=53.1

Q ss_pred             CeEEEE--ecChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255            1 MEVGFL--GLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK   77 (226)
Q Consensus         1 m~IgvI--G~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~   77 (226)
                      |+|++|  |.+.+|..+|+.|++. |+.|++++|++++.++..+.       +.+.-.++.++.+=+.+.+.+++.+   
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dvs~~~sv~~~~---   72 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ-------LQAEGLSPRFHQLDIDDLQSIRALR---   72 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHH---
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEEecCCHHHHHHHH---
Confidence            689988  7789999999999975 89999999999987765432       0000011223333355666776665   


Q ss_pred             cccccccCCCcEEEecC
Q 027255           78 GGVLEQICPGKGYIDMS   94 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~s   94 (226)
                      +.+.+...+=.++|+..
T Consensus        73 ~~~~~~~g~iDiLVnNA   89 (275)
T d1wmaa1          73 DFLRKEYGGLDVLVNNA   89 (275)
T ss_dssp             HHHHHHHSSEEEEEECC
T ss_pred             HHHHHhcCCcEEEEEcC
Confidence            44444332324556543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.12  E-value=0.013  Score=45.73  Aligned_cols=40  Identities=20%  Similarity=0.335  Sum_probs=33.7

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+.+| | .+.+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   48 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN   48 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45555 4 5789999999999999999999999998877654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.10  E-value=0.0033  Score=43.34  Aligned_cols=31  Identities=23%  Similarity=0.191  Sum_probs=29.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      ++.|||.|.+|.-+|..|.+.|.+|+++.|+
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            6899999999999999999999999999875

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.09  E-value=0.0018  Score=50.31  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |||.|+|. |.+|+.+++.|.++||+|+..||+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            89999997 9999999999999999999999864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.09  E-value=0.0057  Score=47.68  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=33.0

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+.+|  |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~   50 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS   50 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34455  45779999999999999999999999988877543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.018  Score=44.23  Aligned_cols=41  Identities=24%  Similarity=0.173  Sum_probs=34.3

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~   42 (226)
                      ++-|.|. +.+|.++|+.|++.|++|.+.+|++++++++.++
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (242)
T d1cyda_           7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE   48 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence            3445565 6799999999999999999999999988877654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0044  Score=48.12  Aligned_cols=84  Identities=18%  Similarity=0.134  Sum_probs=52.6

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEE--ecCCHHHHHHHhhcc
Q 027255            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG--MLADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~--~~p~~~~~~~v~~~~   77 (226)
                      |+.+| |. +.+|.++|+.|++.|++|.+.+|++++.++..+.=       .+......+..+  =+.+.+.+++++   
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dv~~~~~v~~~~---   73 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL-------HEQFEPQKTLFIQCDVADQQQLRDTF---   73 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TTTSCGGGEEEEECCTTSHHHHHHHH---
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------HHhcCCCcEEEEEeecCCHHHHHHHH---
Confidence            45555 54 77999999999999999999999999877664320       000011122222  245666777766   


Q ss_pred             cccccccCCCcEEEecCC
Q 027255           78 GGVLEQICPGKGYIDMST   95 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~st   95 (226)
                      +.+.+...+=.++|+...
T Consensus        74 ~~~~~~~G~iDilVnnAg   91 (254)
T d2gdza1          74 RKVVDHFGRLDILVNNAG   91 (254)
T ss_dssp             HHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHcCCcCeeccccc
Confidence            445444434456676654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.04  E-value=0.0029  Score=48.83  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=29.9

Q ss_pred             CeEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |||.+| | .+.+|.++|+.|++.|++|++.||+.+
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            888777 4 578999999999999999999998764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.04  E-value=0.0043  Score=42.47  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=30.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +|.|||.|.+|.-+|..|++.|.+|++..+.+.
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            799999999999999999999999999977654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.03  E-value=0.013  Score=45.05  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=63.5

Q ss_pred             CeEEEEecChhHHHHHHHHHh-CCCeEEE-EcCC----------chhHHHHHHC--------CCcccCCHHHHh-hhCCe
Q 027255            1 MEVGFLGLGIMGKAISMNLLR-NGFKVTV-WNRT----------LSKCDELVAH--------GATVGGSPAEVI-KKCTI   59 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~-~G~~V~~-~dr~----------~~~~~~l~~~--------g~~~~~s~~~~~-~~adv   59 (226)
                      ++|.|-|+|++|..+|+.|.+ .|..|+. .|.+          .+.+.+....        +.... +.+++. ..||+
T Consensus        33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~DI  111 (239)
T d1gtma1          33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVDV  111 (239)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHSCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccccccE
Confidence            479999999999999999975 5887654 4543          2233222221        22332 445554 46999


Q ss_pred             EEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        60 vi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ++-|-.......+.       .+.+ .-++|+...+... +. +-.+.+.++|+.|+..
T Consensus       112 l~PcA~~~~I~~~~-------a~~i-~ak~I~e~AN~p~-t~-ea~~~L~~rgI~~iPD  160 (239)
T d1gtma1         112 LAPAAIEEVITKKN-------ADNI-KAKIVAEVANGPV-TP-EADEILFEKGILQIPD  160 (239)
T ss_dssp             EEECSCSCCBCTTG-------GGGC-CCSEEECCSSSCB-CH-HHHHHHHHTTCEEECH
T ss_pred             EeeccccccccHHH-------HHhc-cccEEEecCCCCC-CH-HHHHHHHHCCCEEecc
Confidence            98886542222222       2334 3456777665422 22 2356788899988754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.03  E-value=0.0049  Score=47.98  Aligned_cols=82  Identities=13%  Similarity=0.130  Sum_probs=49.8

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEe--cCCHHHHHHHhhcc
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPAAALSVVFDK   77 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~--~p~~~~~~~v~~~~   77 (226)
                      |+.+| | .+.+|.++|+.|+++|++|.+.+|+.++.++..+.       ..+. ...++..+.  +.+.+.++.++   
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------~~~~-~g~~~~~~~~Dv~~~~~v~~~~---   78 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEK-------VGKE-FGVKTKAYQCDVSNTDIVTKTI---   78 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHH-------HHHH-HTCCEEEEECCTTCHHHHHHHH---
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHH-hCCceEEEEccCCCHHHHHHHH---
Confidence            44455 4 46799999999999999999999999887665331       1010 012333222  44666666666   


Q ss_pred             cccccccCCCcEEEecC
Q 027255           78 GGVLEQICPGKGYIDMS   94 (226)
Q Consensus        78 ~~l~~~l~~g~ivvd~s   94 (226)
                      +.+.+...+=.++|+..
T Consensus        79 ~~~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          79 QQIDADLGPISGLIANA   95 (260)
T ss_dssp             HHHHHHSCSEEEEEECC
T ss_pred             HHHHHHhCCCcEecccc
Confidence            44444433334556544

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.02  E-value=0.016  Score=39.55  Aligned_cols=109  Identities=18%  Similarity=0.176  Sum_probs=76.3

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHhhccc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ||.+-|. |..|+-.++...+.|-+|. ...+|.+--. .-.|+.++++.+|++++  +|+-++.+|.+.+...++   +
T Consensus         9 rVivQGiTG~~G~~ht~~m~~yGT~iV-aGVtPgkgG~-~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~---E   83 (121)
T d1oi7a1           9 RVLVQGITGREGQFHTKQMLTYGTKIV-AGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAAL---E   83 (121)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHH---H
T ss_pred             cEEEEcCCCcHHHHHHHHHHHhCCceE-eeeecCCCCc-EEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHH---H
Confidence            6888897 9999999999999987753 3344444211 01378889999999874  899999999876666666   3


Q ss_pred             ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255           79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      .+-..+  ..+++-+--+.+.++.++.+.+++++..++-
T Consensus        84 Ai~agI--~liv~ITEgVPv~Dm~~i~~~~~~~~~~liG  120 (121)
T d1oi7a1          84 AAHAGI--PLIVLITEGIPTLDMVRAVEEIKALGSRLIG  120 (121)
T ss_dssp             HHHTTC--SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHhCCC--cEEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence            333222  2233333347788889999999888877653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0043  Score=47.79  Aligned_cols=40  Identities=18%  Similarity=0.185  Sum_probs=33.9

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+++|  |.+.+|.++|+.|+++|++|++.+|+.++.+...+
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            46655  45789999999999999999999999998877654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.02  E-value=0.005  Score=48.32  Aligned_cols=40  Identities=15%  Similarity=0.258  Sum_probs=33.4

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+.+|  |.+.+|.++|+.|+++|++|.+.+|++++++++.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~   47 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQ   47 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45555  45889999999999999999999999988776543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.011  Score=45.72  Aligned_cols=76  Identities=16%  Similarity=0.104  Sum_probs=47.7

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      |+.+| | .+.+|.++|+.|++.|++|.+.+|+++..+...+.+..             .+-.=+.+.+.+++++   +.
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~-------------~~~~Dv~~~~~v~~~~---~~   69 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGA-------------FFQVDLEDERERVRFV---EE   69 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCE-------------EEECCTTCHHHHHHHH---HH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe-------------EEEEeCCCHHHHHHHH---HH
Confidence            34444 4 68999999999999999999999998765543332221             1222244666666666   44


Q ss_pred             cccccCCCcEEEec
Q 027255           80 VLEQICPGKGYIDM   93 (226)
Q Consensus        80 l~~~l~~g~ivvd~   93 (226)
                      +.+...+=.++|+.
T Consensus        70 ~~~~~G~iDiLVnn   83 (248)
T d2d1ya1          70 AAYALGRVDVLVNN   83 (248)
T ss_dssp             HHHHHSCCCEEEEC
T ss_pred             HHHhcCCCCeEEEe
Confidence            44444333455554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.99  E-value=0.0084  Score=47.02  Aligned_cols=40  Identities=15%  Similarity=0.253  Sum_probs=32.9

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   46 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ   46 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34455  45789999999999999999999999988776543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.97  E-value=0.0034  Score=50.44  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=30.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~   34 (226)
                      +||+|||+|.-|..+|..|++.|  ++|++++++.+
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            37999999999999999998866  69999999864

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.96  E-value=0.014  Score=44.93  Aligned_cols=83  Identities=16%  Similarity=0.097  Sum_probs=47.8

Q ss_pred             EEEEecC---hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255            3 VGFLGLG---IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG   79 (226)
Q Consensus         3 IgvIG~G---~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~   79 (226)
                      +-|.|.+   .+|.++|+.|++.|++|.+.+|+++..+...+.        .+....+..+-.-+.+.+.++.++   +.
T Consensus        11 alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~~~~~v~~~~---~~   79 (256)
T d1ulua_          11 ALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKL--------AEALGGALLFRADVTQDEELDALF---AG   79 (256)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH--------HHHTTCCEEEECCTTCHHHHHHHH---HH
T ss_pred             EEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHh--------hhccCcccccccccCCHHHHHHHH---HH
Confidence            4555764   499999999999999999999986654433211        111111222222244566666666   44


Q ss_pred             cccccCCCcEEEecCCC
Q 027255           80 VLEQICPGKGYIDMSTV   96 (226)
Q Consensus        80 l~~~l~~g~ivvd~st~   96 (226)
                      +.+...+=.++|+....
T Consensus        80 ~~~~~g~iDilVnnag~   96 (256)
T d1ulua_          80 VKEAFGGLDYLVHAIAF   96 (256)
T ss_dssp             HHHHHSSEEEEEECCCC
T ss_pred             HHHhcCCceEEEecccc
Confidence            44443333456665543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=95.93  E-value=0.013  Score=45.59  Aligned_cols=110  Identities=17%  Similarity=0.154  Sum_probs=72.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH----CCCc---ccCCHHHHhh--hCCeEEEecCCHHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HGAT---VGGSPAEVIK--KCTITIGMLADPAAALS   72 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----~g~~---~~~s~~~~~~--~advvi~~~p~~~~~~~   72 (226)
                      +|.=+|+|. |. ++..+++.|.+|+.+|.++..++..++    .|+.   ...+..+...  ..|+|+... ......+
T Consensus       123 ~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani-~~~~l~~  199 (254)
T d2nxca1         123 KVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL-YAELHAA  199 (254)
T ss_dssp             EEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC-CHHHHHH
T ss_pred             EEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc-ccccHHH
Confidence            577789997 43 555677889999999999998876653    3432   2345555443  478887765 3355666


Q ss_pred             HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+   +.+...++||..++- |.........+.+.+.+.|...++.
T Consensus       200 l~---~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         200 LA---PRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             HH---HHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             HH---HHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEEE
Confidence            65   566677888876553 2223345567777888888876653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.92  E-value=0.0053  Score=42.88  Aligned_cols=34  Identities=15%  Similarity=0.335  Sum_probs=31.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      +|.|||.|..|..+|..|.+.|++|+++++.+.-
T Consensus        37 ~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          37 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             EEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            7999999999999999999999999999887653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.91  E-value=0.0037  Score=49.21  Aligned_cols=32  Identities=25%  Similarity=0.577  Sum_probs=29.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL   33 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   33 (226)
                      +|.|||.|.+|...|..|++.|. +|+++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            68999999999999999999995 799999874

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0033  Score=48.66  Aligned_cols=41  Identities=29%  Similarity=0.273  Sum_probs=35.2

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~   42 (226)
                      |+.+|  |.+.+|.++|+.|+++|++|.+.+|++++++++.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~   49 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY   49 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            46666  679999999999999999999999999887776554

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.89  E-value=0.015  Score=44.53  Aligned_cols=75  Identities=23%  Similarity=0.196  Sum_probs=48.8

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEE--ecCCHHHHHHHhhccc
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIG--MLADPAAALSVVFDKG   78 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~--~~p~~~~~~~v~~~~~   78 (226)
                      +-|.|. +.+|.++|+.|+++|++|++.+|+.++.++..+. +.             +++++  =+.+.+.+++.+   +
T Consensus         8 alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~Dls~~~~i~~~~---~   71 (241)
T d2a4ka1           8 ILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEA-------------EAIAVVADVSDPKAVEAVF---A   71 (241)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCS-------------SEEEEECCTTSHHHHHHHH---H
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-------------ceEEEEecCCCHHHHHHHH---H
Confidence            444465 6699999999999999999999999987766553 21             22222  244556666665   4


Q ss_pred             ccccccCCCcEEEec
Q 027255           79 GVLEQICPGKGYIDM   93 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~   93 (226)
                      .+.....+=.++|+.
T Consensus        72 ~i~~~~g~iDiLinn   86 (241)
T d2a4ka1          72 EALEEFGRLHGVAHF   86 (241)
T ss_dssp             HHHHHHSCCCEEEEG
T ss_pred             HHHHHhCCccEeccc
Confidence            444444344555554

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.86  E-value=0.0043  Score=42.09  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=30.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      ++.|||.|..|.-+|..|.+.|++|+++.+.+.
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            689999999999999999999999999988654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0043  Score=48.37  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=30.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      ||.|||.|.-|..-|..|+++|++|+++..+..
T Consensus         7 kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            799999999999999999999999999987643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0044  Score=46.16  Aligned_cols=32  Identities=31%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |.|||.|.-|...|..|+++|++|+++++++.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            78999999999999999999999999999764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.80  E-value=0.0071  Score=46.55  Aligned_cols=84  Identities=12%  Similarity=0.133  Sum_probs=50.5

Q ss_pred             CeEEEE-ec-ChhHHHHHHHHHhCCCe-------EEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255            1 MEVGFL-GL-GIMGKAISMNLLRNGFK-------VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL   71 (226)
Q Consensus         1 m~IgvI-G~-G~mG~~~A~~l~~~G~~-------V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~   71 (226)
                      ++|.+| |. +.+|.++|+.|+++|++       |.+++|++++++++.+.       ..+.-..+..+-.=+.+.++++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~-------~~~~g~~~~~~~~Dvt~~~~v~   73 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE-------CRAEGALTDTITADISDMADVR   73 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH-------HHTTTCEEEEEECCTTSHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEecCCCHHHHH
Confidence            456555 55 77999999999999987       88999999988776432       0000001112222245556666


Q ss_pred             HHhhcccccccccCCCcEEEecC
Q 027255           72 SVVFDKGGVLEQICPGKGYIDMS   94 (226)
Q Consensus        72 ~v~~~~~~l~~~l~~g~ivvd~s   94 (226)
                      .++   +.+.+...+=.++|+..
T Consensus        74 ~~~---~~~~~~~g~iDilvnnA   93 (240)
T d2bd0a1          74 RLT---THIVERYGHIDCLVNNA   93 (240)
T ss_dssp             HHH---HHHHHHTSCCSEEEECC
T ss_pred             HHH---HHHHHHcCCcceeeccc
Confidence            665   44444443334566554

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.76  E-value=0.0039  Score=48.68  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=25.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTV   28 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~   28 (226)
                      ++|.|-|.|++|...|+.|.+.|.+|+.
T Consensus        37 ~~v~IQGfGnVG~~~a~~L~e~Gakvva   64 (255)
T d1bgva1          37 KTVALAGFGNVAWGAAKKLAELGAKAVT   64 (255)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            4789999999999999999999998764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.74  E-value=0.0058  Score=46.53  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=32.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      .+|.|||.|.-|...|..|++.|++|++++++++-
T Consensus        50 k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          50 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             ceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            37999999999999999999999999999987754

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=95.72  E-value=0.0089  Score=46.45  Aligned_cols=99  Identities=11%  Similarity=0.065  Sum_probs=67.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV   80 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l   80 (226)
                      .||++||.  +  +....+.+.|.++++++|+|+       .|.......++++.+||+||+.-  ..-+...+   +.+
T Consensus       123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~-------~gd~p~~~~~~lLp~aD~viiTG--sTlvN~Tl---~~L  186 (251)
T d2h1qa1         123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPE-------EGDYPLPASEFILPECDYVYITC--ASVVDKTL---PRL  186 (251)
T ss_dssp             SEEEEESC--C--TTHHHHHTTTSEEEEEESSCC-------TTCEEGGGHHHHGGGCSEEEEET--HHHHHTCH---HHH
T ss_pred             CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCC-------CCCCCchHHHHhhhcCCEEEEEe--chhhcCCH---HHH
Confidence            37999975  5  677778888999999999985       24445556778899999999875  24555666   677


Q ss_pred             ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      ++..++...+|-+..+.|-.-    + +.++|+.++.+-+
T Consensus       187 L~~~~~a~~vvl~GPS~p~~P----~-lf~~Gv~~lag~~  221 (251)
T d2h1qa1         187 LELSRNARRITLVGPGTPLAP----V-LFEHGLQELSGFM  221 (251)
T ss_dssp             HHHTTTSSEEEEESTTCCCCG----G-GGGTTCSEEEEEE
T ss_pred             HHhCCcCCEEEEECCCcccCH----H-HHhcCCceEeEEE
Confidence            787777765544433322111    1 2357888877644

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.67  E-value=0.0053  Score=48.88  Aligned_cols=36  Identities=22%  Similarity=0.149  Sum_probs=32.6

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD   37 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~   37 (226)
                      .|.|||+|.-|..+|..|.+.|++|++++++++--.
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGG   44 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG   44 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccc
Confidence            589999999999999999999999999999876433

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.66  E-value=0.0081  Score=40.84  Aligned_cols=34  Identities=15%  Similarity=0.036  Sum_probs=31.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      .+|.|||.|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            3799999999999999999999999999988765

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.65  E-value=0.0045  Score=42.61  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=31.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      ++.|||.|.+|.-+|..|.+.|.+|++..|++..
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            6899999999999999999999999999887653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.61  E-value=0.041  Score=42.45  Aligned_cols=38  Identities=13%  Similarity=0.192  Sum_probs=30.6

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCc-hhHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDEL   39 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~-~~~~~l   39 (226)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+. +..+++
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~   45 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKV   45 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence            56666  557799999999999999999999974 455544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.57  E-value=0.0059  Score=47.38  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |.|||.|.+|...|..|+++|++|+++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7899999999999999999999999999753

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.56  E-value=0.0032  Score=47.55  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=30.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-------eEEEEcCCchh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-------KVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-------~V~~~dr~~~~   35 (226)
                      ||+|||.|.-|..-|..|+++||       +|++|++.+..
T Consensus         4 ~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            89999999999999999999884       79999998753

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.53  E-value=0.016  Score=45.10  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=29.8

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCch-hHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDE   38 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~   38 (226)
                      |+.+|  |.+.+|.++|+.|+++|++|.+.+|+.+ ..+.
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~   47 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANS   47 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHH
Confidence            45566  5688999999999999999999999865 4443

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.52  E-value=0.013  Score=44.74  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHH
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l   39 (226)
                      ++-|.|. +.+|.++|+.|++.|++|.+.+|+++.+++.
T Consensus         6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~   44 (234)
T d1o5ia_           6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS   44 (234)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc
Confidence            3555565 7799999999999999999999998776543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.50  E-value=0.0097  Score=45.91  Aligned_cols=34  Identities=15%  Similarity=0.276  Sum_probs=28.2

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      |+.+| |. +.+|.++|+.|++.|++|.+.+|+++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            45555 54 779999999999999999999998753

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.49  E-value=0.022  Score=43.68  Aligned_cols=39  Identities=31%  Similarity=0.367  Sum_probs=30.7

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEE-cCCchhHHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVW-NRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~-dr~~~~~~~l~   40 (226)
                      +|.+|  |.+.+|.++|+.|+++|++|.+. .|+++..+++.
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~   43 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVS   43 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence            45566  56889999999999999999875 66777766654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.052  Score=36.98  Aligned_cols=92  Identities=16%  Similarity=0.146  Sum_probs=62.7

Q ss_pred             CeEEEEecC-----------hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLG-----------IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G-----------~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      .||-|||.|           ..+...++.|.+.|+++++.|.||+.+          .++++    -+|-+.+---+.+.
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV----------std~d----~aD~lYfeplt~e~   70 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV----------STDYD----TSDRLYFEPVTLED   70 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS----------TTSTT----SSSEEECCCCSHHH
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh----------hcChh----hcCceEEccCCHHH
Confidence            478999998           467788999999999999999999753          22322    35655543225567


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l  116 (226)
                      +.+++.       .-+|..+++..   .-.+...++..+.+.|+.+|
T Consensus        71 v~~Ii~-------~E~p~~ii~~~---GGQtalnla~~L~~~gv~iL  107 (121)
T d1a9xa4          71 VLEIVR-------IEKPKGVIVQY---GGQTPLKLARALEAAGVPVI  107 (121)
T ss_dssp             HHHHHH-------HHCCSEEECSS---STHHHHTTHHHHHHTTCCBC
T ss_pred             HHHHHH-------HhCCCEEEeeh---hhhhHHHHHHHHHHcCCcEE
Confidence            777762       22456666544   34566777888888886543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.0062  Score=48.32  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      .|.|||+|..|...|..|+++|++|.+++++..-
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCc
Confidence            5899999999999999999999999999987643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.034  Score=42.56  Aligned_cols=38  Identities=11%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             eEEEEecC---hhHHHHHHHHHhCCCeEEEEcCCchhHHHH
Q 027255            2 EVGFLGLG---IMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (226)
Q Consensus         2 ~IgvIG~G---~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l   39 (226)
                      +|-|.|.+   .+|.++|+.|++.|++|++.+|+++..+.+
T Consensus         7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV   47 (258)
T ss_dssp             EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred             EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            34455654   488999999999999999999986654443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.39  E-value=0.0071  Score=44.68  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTL   33 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~   33 (226)
                      |||.|||.|..|..+|..|.+.  +.+|++++|++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            9999999999999999999886  46799998764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.35  E-value=0.0015  Score=45.56  Aligned_cols=35  Identities=17%  Similarity=0.337  Sum_probs=27.6

Q ss_pred             eEEEEecChhHHHHHHHHH-hCCCeEE-EEcCCchhH
Q 027255            2 EVGFLGLGIMGKAISMNLL-RNGFKVT-VWNRTLSKC   36 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~-~~G~~V~-~~dr~~~~~   36 (226)
                      +|.|+|+|.+|+.+++.+. ..+|++. ++|-++++.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~   41 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV   41 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhc
Confidence            6899999999999998775 3567766 458887764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.22  E-value=0.02  Score=44.51  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=29.3

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCc-hhHHHH
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTL-SKCDEL   39 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~-~~~~~l   39 (226)
                      |+.+| | .+.+|.++|+.|+++|++|++.+|+. +..+.+
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            45555 4 69999999999999999999987764 444443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.16  E-value=0.01  Score=40.90  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=30.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      ++.|||.|.+|.-+|..|.+.|.+|++..+.+.
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            689999999999999999999999999988764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0089  Score=47.14  Aligned_cols=31  Identities=32%  Similarity=0.337  Sum_probs=29.0

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |.|||.|.-|..-|..|+++|++|++++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998754

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0062  Score=46.32  Aligned_cols=65  Identities=23%  Similarity=0.229  Sum_probs=45.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHCCC-------cccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGA-------TVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~g~-------~~~~s~~~~~~~advvi~~~p   65 (226)
                      ++|.|.|. |.+|+.+++.|.++|  ++|++.+|++.....-....+       .-..+..++.+++|+++.|+.
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccc
Confidence            46888975 999999999999988  489999997654322111111       122345566778999998764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.12  E-value=0.01  Score=45.07  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=32.6

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l   39 (226)
                      |.|||.|..|...|..|+++|++|.++++++..-...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~   41 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKL   41 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcce
Confidence            8899999999999999999999999999887644443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.034  Score=40.15  Aligned_cols=43  Identities=21%  Similarity=0.083  Sum_probs=35.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      +|.|+|. |.+|....+.....|.+|++.++++++.+.+.+.|+
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa   74 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA   74 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred             EEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence            5778855 558888887777889999999999999988877664

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.017  Score=44.90  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      +-|.|. +.+|.++|+.|++.|++|++.+|+.++.+++.+
T Consensus        17 alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          17 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            445565 669999999999999999999999998887654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.025  Score=39.91  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      ++|.|||.|.+|..-++.|++.|.+|+++.+.
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999999999999999999999999654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.87  E-value=0.013  Score=46.86  Aligned_cols=37  Identities=24%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHH
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD   37 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~   37 (226)
                      +||-|.| .|.+|+.+++.|+++||+|++++|+.....
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~   46 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVP   46 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccH
Confidence            5899997 699999999999999999999999876543

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.022  Score=43.97  Aligned_cols=40  Identities=30%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             eEEEE-ec-ChhHHHHHHHHHh---CCCeEEEEcCCchhHHHHHH
Q 027255            2 EVGFL-GL-GIMGKAISMNLLR---NGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         2 ~IgvI-G~-G~mG~~~A~~l~~---~G~~V~~~dr~~~~~~~l~~   41 (226)
                      ||+|| |. ..+|.++|+.|++   +|++|++.+|++++++++.+
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~   51 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKE   51 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence            68888 54 6899999999986   79999999999998877643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.75  E-value=0.044  Score=41.64  Aligned_cols=114  Identities=16%  Similarity=0.067  Sum_probs=69.0

Q ss_pred             CeEEEEecCh--hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----C-Ccc----cCCH---HHHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGI--MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G-ATV----GGSP---AEVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~--mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g-~~~----~~s~---~~~~~~advvi~~~p~   66 (226)
                      ++|.=+|+|.  .-..+|...-.. -.|+.+|.++..++.+.+.    + ...    ...+   .......|+|+..++.
T Consensus        75 ~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~  153 (227)
T d1g8aa_          75 KSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ  153 (227)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS
T ss_pred             CEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEccc
Confidence            4677777755  444445544333 4899999999988776543    2 111    1112   2233456888888877


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEec-------CCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDM-------STVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~-------st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +...+.++   ..+...|++|..++-+       ++..|....+-.+.+.+.|...++.
T Consensus       154 ~~~~~~~l---~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~  209 (227)
T d1g8aa_         154 PTQAKILI---DNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER  209 (227)
T ss_dssp             TTHHHHHH---HHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             cchHHHHH---HHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            66666666   5566677777654432       2345666655556666678777664

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.66  E-value=0.017  Score=41.17  Aligned_cols=34  Identities=18%  Similarity=0.118  Sum_probs=29.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~   34 (226)
                      +||.|||.|..|..+|..|.+.++  +|+++++++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            589999999999999999999875  7899988763

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.63  E-value=0.024  Score=43.75  Aligned_cols=39  Identities=26%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEE-EcCCchhHHHHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTV-WNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~-~dr~~~~~~~l~   40 (226)
                      |+.+|  |.+.+|.++|+.|++.|++|++ ++++.+..+++.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~   48 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVV   48 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHH
Confidence            34444  5578999999999999999987 566666655543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.62  E-value=0.085  Score=38.15  Aligned_cols=44  Identities=20%  Similarity=0.083  Sum_probs=36.3

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      +|.|.|. |..|...++.....|.+|+...+++++.+.+.+.|+.
T Consensus        32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~   76 (182)
T d1v3va2          32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD   76 (182)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred             EEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh
Confidence            5677787 6688877777778899999999999999888888754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.55  E-value=0.019  Score=44.00  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=33.8

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      |.|||.|..|...|..|+++|++|.++++++..-..+.
T Consensus         7 ViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~   44 (253)
T d2gqfa1           7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL   44 (253)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceE
Confidence            88999999999999999999999999999877655544

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.44  E-value=0.026  Score=44.37  Aligned_cols=30  Identities=20%  Similarity=0.464  Sum_probs=26.6

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcC
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      ||-|.| .|.+|+.+++.|+++||+|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            687775 599999999999999999999874

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.37  E-value=0.017  Score=45.77  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=29.4

Q ss_pred             EEEEecChhHHHHHHHHH-----hCCCeEEEEcCCchh
Q 027255            3 VGFLGLGIMGKAISMNLL-----RNGFKVTVWNRTLSK   35 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~-----~~G~~V~~~dr~~~~   35 (226)
                      |.|||.|..|..+|..|+     ++|++|+++++.+..
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            889999999999999996     579999999987653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.29  E-value=0.031  Score=42.67  Aligned_cols=35  Identities=31%  Similarity=0.253  Sum_probs=28.6

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHH
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD   37 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~   37 (226)
                      +-|.|. +.+|.++|+.|++.|++|.+.+|+.+..+
T Consensus        10 ~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1          10 VLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            334455 67999999999999999999999876543

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.27  E-value=0.038  Score=36.92  Aligned_cols=63  Identities=17%  Similarity=0.150  Sum_probs=47.5

Q ss_pred             eEEEEecC----------hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCC
Q 027255            2 EVGFLGLG----------IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         2 ~IgvIG~G----------~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      +|||+|+-          +-...+...|.+.|.+|.+||+.-...+  ...+.....++.++.+.+|+|++...+
T Consensus        17 ~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~~   89 (108)
T d1dlja3          17 VVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRYD   89 (108)
T ss_dssp             EEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSCC
T ss_pred             EEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCCc
Confidence            57787773          4567789999999999999998755321  123566788999999999987766644

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.03  Score=45.07  Aligned_cols=32  Identities=28%  Similarity=0.411  Sum_probs=26.9

Q ss_pred             eEE-EEe-cChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            2 EVG-FLG-LGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         2 ~Ig-vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      ||. |.| .|.+|+.+++.|+++||+|++.||.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            555 556 79999999999999999999999854

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.14  E-value=0.023  Score=46.25  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=28.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEc
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWN   30 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~d   30 (226)
                      |||.|.|. |.+|+.+++.|++.||+|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            89999875 9999999999999999999997

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.12  E-value=0.084  Score=39.88  Aligned_cols=90  Identities=16%  Similarity=0.173  Sum_probs=57.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC-eEEEEcCC--------chhHH----HHHHC--CCcccCCHHHHhhhCCeEEEecCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT--------LSKCD----ELVAH--GATVGGSPAEVIKKCTITIGMLAD   66 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~--------~~~~~----~l~~~--g~~~~~s~~~~~~~advvi~~~p~   66 (226)
                      ||.|+|+|..|..+|+.|.+.+. +++++||.        ....+    .+...  ......++.++++.+++++.....
T Consensus        28 riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~~~  107 (222)
T d1vl6a1          28 KVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRG  107 (222)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSCS
T ss_pred             EEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccccc
Confidence            78999999999999999998875 68888865        11111    12221  233456788888888876655532


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEecCCCCH
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~   98 (226)
                      ....++.+       ..+.+.-+|.-+|+-.+
T Consensus       108 ~~~~~e~m-------~~~~~rPIIFpLSNPt~  132 (222)
T d1vl6a1         108 NILKPEWI-------KKMSRKPVIFALANPVP  132 (222)
T ss_dssp             SCSCHHHH-------TTSCSSCEEEECCSSSC
T ss_pred             ccccHHHH-------hhcCCCCEEEecCCCcc
Confidence            22222222       33446678888887544

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.04  E-value=0.092  Score=38.38  Aligned_cols=65  Identities=15%  Similarity=0.153  Sum_probs=49.0

Q ss_pred             CeEEEEec--ChhHHHHHHHHHhCCCeEEEEcCC-----chhHHHHHH----C--CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL--GIMGKAISMNLLRNGFKVTVWNRT-----LSKCDELVA----H--GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~--G~mG~~~A~~l~~~G~~V~~~dr~-----~~~~~~l~~----~--g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      .||+|||=  -++...+...+.+-|.++++..+.     ++-.+.+..    .  .+..+.++.++++++|+|.+-.-
T Consensus         6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~w   83 (185)
T d1dxha2           6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVW   83 (185)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred             CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeehh
Confidence            48999994  489999999999999999998763     222333222    2  35678999999999999887653

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.00  E-value=0.12  Score=35.48  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhccc
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDKG   78 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~~~   78 (226)
                      ||-+-|. |.-|+-.++...+.|-+|. -..+|.+--. .-.|+.++++..|+++  ++|.-++.+|.+.+...++   +
T Consensus        17 rVivQGiTG~~G~~ht~~m~~YGT~iV-aGVtPgKgG~-~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~---E   91 (130)
T d1euca1          17 KVICQGFTGKQGTFHSQQALEYGTNLV-GGTTPGKGGK-THLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAIN---E   91 (130)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHH---H
T ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeE-EeeccCCCCc-cccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHH---H
Confidence            6888998 9999999999999998764 2333443211 1137888999999987  5899999999876666666   3


Q ss_pred             ccccccCCCcEEEecC-CCCHHHHHHHHHHHHhcC
Q 027255           79 GVLEQICPGKGYIDMS-TVDHETSIKISRAITSKG  112 (226)
Q Consensus        79 ~l~~~l~~g~ivvd~s-t~~~~~~~~l~~~~~~~g  112 (226)
                      .+-+.+   .++|-.+ -+.+.++.++.+.+.+.+
T Consensus        92 Ai~agI---~liV~ITEgIPv~Dm~~i~~~~~~~~  123 (130)
T d1euca1          92 AIDAEV---PLVVCITEGIPQQDMVRVKHRLLRQG  123 (130)
T ss_dssp             HHHTTC---SEEEECCCCCCHHHHHHHHHHHTTCS
T ss_pred             HHhCCC---CEEEEecCCCCHHHHHHHHHHHHhCC
Confidence            333322   2333333 367778888877665543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.92  E-value=0.044  Score=42.03  Aligned_cols=35  Identities=9%  Similarity=0.003  Sum_probs=29.8

Q ss_pred             eEEEEec-Ch--hHHHHHHHHHhCCCeEEEEcCCchhH
Q 027255            2 EVGFLGL-GI--MGKAISMNLLRNGFKVTVWNRTLSKC   36 (226)
Q Consensus         2 ~IgvIG~-G~--mG~~~A~~l~~~G~~V~~~dr~~~~~   36 (226)
                      ++-|.|+ |.  +|.++|+.|+++|++|++.+|+.++.
T Consensus         8 ~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           8 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence            4566685 54  99999999999999999999988765

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=93.83  E-value=0.05  Score=42.06  Aligned_cols=40  Identities=20%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             CeEEEE--ecChhHHHHHHHHHhCCCeEEEEc-CCchhHHHHH
Q 027255            1 MEVGFL--GLGIMGKAISMNLLRNGFKVTVWN-RTLSKCDELV   40 (226)
Q Consensus         1 m~IgvI--G~G~mG~~~A~~l~~~G~~V~~~d-r~~~~~~~l~   40 (226)
                      |-|+||  |.+.+|.++|+.|+++|++|.+.+ |+.+..+.+.
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            458888  557899999999999999998765 5555555543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.77  E-value=0.024  Score=42.85  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKC   36 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~   36 (226)
                      |+.+|  |.+.+|.++|+.|+++|++|.+.+|+++..
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~   38 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE   38 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence            45566  458999999999999999999999987653

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.065  Score=33.46  Aligned_cols=42  Identities=24%  Similarity=0.279  Sum_probs=35.5

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g   43 (226)
                      +|.|.|. |.+|....+.+...|++|++..+++++.+.+.+.|
T Consensus        34 ~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             cEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            4666655 99999888887889999999999999998887765

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.58  E-value=0.076  Score=38.20  Aligned_cols=47  Identities=23%  Similarity=0.171  Sum_probs=38.2

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG   48 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~   48 (226)
                      +|-|-| .|..|....+.....|.+|+...+++++.+.+.+.|+..+-
T Consensus        26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi   73 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVI   73 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEE
T ss_pred             EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceE
Confidence            366777 59999988877777899999999999999999887765443

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=93.48  E-value=0.022  Score=43.88  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=27.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      |||.|.|. |.+|+.+++.|.+.|+.|.+..++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~   33 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHS   33 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCC
Confidence            99999986 999999999999999866555444

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.39  E-value=0.035  Score=42.09  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      ||-|.|. +.+|.++|+.|+++|++|++.||+++.
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            6767765 899999999999999999999998753

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.31  E-value=0.046  Score=42.83  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      ++|-|.|. |.+|+.+++.|+++||+|++.+|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            46778865 99999999999999999999998653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.30  E-value=0.042  Score=38.86  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=27.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      .||.|||.|..|..+|..|.+ +++|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            389999999999999999964 78999998754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=93.28  E-value=0.037  Score=42.86  Aligned_cols=32  Identities=19%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             EEEEecChhHHHHHHHHHh-CCCeEEEEcCCch
Q 027255            3 VGFLGLGIMGKAISMNLLR-NGFKVTVWNRTLS   34 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~-~G~~V~~~dr~~~   34 (226)
                      |.|||.|.-|...|..|++ .|++|.++++.+.
T Consensus        36 ViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          36 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            8899999999999999987 5999999998864

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.24  E-value=0.062  Score=39.09  Aligned_cols=45  Identities=24%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV   46 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~   46 (226)
                      +|-|.| .|.+|+...+.....|.+|+...+++++.+.+.+.|+..
T Consensus        34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2          34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE
T ss_pred             EEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce
Confidence            467777 599999888887789999999999999999988887643

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=93.24  E-value=0.043  Score=40.68  Aligned_cols=37  Identities=16%  Similarity=0.346  Sum_probs=29.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC---eEEEEcCCchhHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCD   37 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~---~V~~~dr~~~~~~   37 (226)
                      |||-|||.|.-|..++.+|.+.|.   +.+..|-+.+.+.
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~   40 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLE   40 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHh
Confidence            799999999999999999998764   4566677665544

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.047  Score=43.29  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=28.8

Q ss_pred             CeEE-EEe-cChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVG-FLG-LGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~Ig-vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +||+ |.| .|.+|+.++..|.++||+|++.||.++
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            4784 555 599999999999999999999998653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.049  Score=42.87  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=28.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      +||.|.|. |.+|+.+++.|+++||+|+++|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            47889965 99999999999999999999976

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.07  E-value=0.15  Score=40.34  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=25.2

Q ss_pred             EEEEe-cChhHHHHHHHHHhCCCeEEEEcC
Q 027255            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         3 IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      |-|.| .|.+|+.+++.|+++||+|++.|+
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            55555 599999999999999999999875

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.03  E-value=0.38  Score=37.64  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=27.4

Q ss_pred             eEEEE-e-cChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvI-G-~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |+.+| | .+.+|.++|+.|+++|++|.+.||+.+
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            45555 4 478999999999999999999988754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.048  Score=40.31  Aligned_cols=30  Identities=20%  Similarity=0.030  Sum_probs=28.4

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      |.|||.|..|...|..+++.|.+|.+++++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999875

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.02  E-value=0.066  Score=40.86  Aligned_cols=34  Identities=26%  Similarity=0.495  Sum_probs=28.1

Q ss_pred             EEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhH
Q 027255            3 VGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKC   36 (226)
Q Consensus         3 IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~   36 (226)
                      +++|  |.+.+|.++|+.|+++|++|++.+|+.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            4455  456799999999999999999999986653

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.85  E-value=0.17  Score=35.83  Aligned_cols=65  Identities=8%  Similarity=0.126  Sum_probs=47.8

Q ss_pred             CeEEEEec--ChhHHHHHHHHHhCCCeEEEEcCCc-----hhHHH---H-HHC--CCcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGL--GIMGKAISMNLLRNGFKVTVWNRTL-----SKCDE---L-VAH--GATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~--G~mG~~~A~~l~~~G~~V~~~dr~~-----~~~~~---l-~~~--g~~~~~s~~~~~~~advvi~~~p   65 (226)
                      .||+|||=  .++-..+...+.+-|.+++++.+..     ...+.   + .+.  .+....+++++++++|+|.+-..
T Consensus         4 ~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~~   81 (161)
T d1vlva2           4 VKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVW   81 (161)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccce
Confidence            48999994  4788999999999999999886532     22221   1 122  35678899999999999988664

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.77  E-value=0.081  Score=37.17  Aligned_cols=30  Identities=17%  Similarity=0.157  Sum_probs=27.2

Q ss_pred             ecChhHHHHHHHHHhCCCeEEEEcCCchhH
Q 027255            7 GLGIMGKAISMNLLRNGFKVTVWNRTLSKC   36 (226)
Q Consensus         7 G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~   36 (226)
                      |.|.+|..+|..|++.|++|++..+.+.-.
T Consensus        48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          48 DTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             CCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            999999999999999999999998876543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=92.74  E-value=0.05  Score=41.95  Aligned_cols=105  Identities=19%  Similarity=0.185  Sum_probs=64.4

Q ss_pred             CeEEEEecCh--hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----C----Ccc-cCCHHHHh--hhCCeEEEecCCH
Q 027255            1 MEVGFLGLGI--MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G----ATV-GGSPAEVI--KKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~--mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g----~~~-~~s~~~~~--~~advvi~~~p~~   67 (226)
                      ++|.=+|+|.  +...||+.+... -.|+.+|++++.++...+.    +    +.. ..+..+..  ...|.|++-+|++
T Consensus        87 ~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p~p  165 (250)
T d1yb2a1          87 MDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDP  165 (250)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCSCG
T ss_pred             CEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCCch
Confidence            3566677655  455566665444 3899999999887765542    1    111 12233322  2469999999886


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCC
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG  113 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~  113 (226)
                      ..+   +   +.+...|+||..++..+. ..+..+++.+.+++.|.
T Consensus       166 ~~~---l---~~~~~~LKpGG~lv~~~P-~i~Qv~~~~~~l~~~gf  204 (250)
T d1yb2a1         166 WNH---V---QKIASMMKPGSVATFYLP-NFDQSEKTVLSLSASGM  204 (250)
T ss_dssp             GGS---H---HHHHHTEEEEEEEEEEES-SHHHHHHHHHHSGGGTE
T ss_pred             HHH---H---HHHHHhcCCCceEEEEeC-CcChHHHHHHHHHHCCC
Confidence            533   2   334466778877664322 34667788888888774

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.056  Score=42.96  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=27.0

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcC
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      ||.|.| .|.+|+.+++.|+++||+|++.|+
T Consensus         4 KILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            698886 599999999999999999999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=92.68  E-value=0.21  Score=38.17  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHH
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l   39 (226)
                      |-|.|. +.+|..+|+.|++.|.+|++..|+.++.+.+
T Consensus         8 vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~   45 (254)
T d1sbya1           8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL   45 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH
T ss_pred             EEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH
Confidence            444554 5799999999999999988887766655444

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.62  E-value=0.061  Score=39.91  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=29.5

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |.|||.|.-|..-|..+++.|++|.++++.+.
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            78999999999999999999999999987644

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.61  E-value=0.066  Score=42.16  Aligned_cols=32  Identities=25%  Similarity=0.239  Sum_probs=26.9

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      ++-|.| .|.+|+.+++.|+++||+|+++||..
T Consensus         3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            344555 59999999999999999999999853

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.59  E-value=0.046  Score=39.13  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=28.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      .+|.|||.|..|..+|..|.+.|++|++..+.+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            379999999999999999999999877664443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.57  E-value=0.16  Score=40.73  Aligned_cols=31  Identities=29%  Similarity=0.392  Sum_probs=27.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-CCCeEEEEcC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLR-NGFKVTVWNR   31 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~-~G~~V~~~dr   31 (226)
                      |||-|.|. |.+|+.+++.|++ .||+|++.|+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            89988865 9999999999985 7999999874

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.47  E-value=0.42  Score=35.02  Aligned_cols=100  Identities=19%  Similarity=0.155  Sum_probs=66.0

Q ss_pred             HHHHHHHhCCCeEEEEcC---Cch-hHHHHHHCCCcccCCHHHHhhhCCeEEEec-CCHHHHHHHhhcccccccccCCCc
Q 027255           14 AISMNLLRNGFKVTVWNR---TLS-KCDELVAHGATVGGSPAEVIKKCTITIGML-ADPAAALSVVFDKGGVLEQICPGK   88 (226)
Q Consensus        14 ~~A~~l~~~G~~V~~~dr---~~~-~~~~l~~~g~~~~~s~~~~~~~advvi~~~-p~~~~~~~v~~~~~~l~~~l~~g~   88 (226)
                      ..++.|.+.||+|++=.-   ... .=+...+.|++.+++.+++..++|+|+..- |...   +.-   ......+++|+
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~---e~~---~~ei~~lk~g~   94 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTA---EEG---TDEVALIKEGA   94 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCG---GGS---CCGGGGSCTTC
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCccc---ccc---hhHhhhccCce
Confidence            357889999999987411   111 113466779999999999999999887654 3322   111   12346688999


Q ss_pred             EEEecCCCCHHHHHHHHHHHHhcCCcEEecCCC
Q 027255           89 GYIDMSTVDHETSIKISRAITSKGGHFLEAPVS  121 (226)
Q Consensus        89 ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~  121 (226)
                      ++|..-  .|....++-+.+.++++..++--..
T Consensus        95 ~li~~l--~p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          95 VLMCHL--GALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             EEEEEC--CGGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             EEEEec--ccccchhHHHHHHhcCceEEeeecc
Confidence            998754  4555556677777888876665433

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=92.39  E-value=0.059  Score=38.95  Aligned_cols=30  Identities=33%  Similarity=0.574  Sum_probs=27.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWN   30 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~d   30 (226)
                      |||||=|+|.+|+.+.+.|...+++|...|
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN   30 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIN   30 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence            899999999999999999998899987765

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.37  E-value=0.028  Score=44.95  Aligned_cols=30  Identities=20%  Similarity=0.203  Sum_probs=26.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeEEEEc
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWN   30 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~d   30 (226)
                      |||.|.| .|.+|+.++..|+++||+|.+++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~   33 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            7899998 69999999999999998866554

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.04  E-value=0.079  Score=35.52  Aligned_cols=33  Identities=18%  Similarity=0.064  Sum_probs=26.9

Q ss_pred             eEEEEecChhHHHHHHHHHh---CCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLR---NGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~---~G~~V~~~dr~~~   34 (226)
                      +|.|||.|.+|.-+|..|.+   +|.+|+++.+.+.
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            68999999999999966554   5668999987654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.97  E-value=0.087  Score=35.21  Aligned_cols=33  Identities=15%  Similarity=0.021  Sum_probs=28.0

Q ss_pred             eEEEEecChhHHHHHHHHHh---CCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLR---NGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~---~G~~V~~~dr~~~   34 (226)
                      +|.|||.|..|.-+|..|.+   .|.+|+++.|.+.
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            79999999999999987654   4889999988654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.97  E-value=0.065  Score=39.52  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |.|||.|.-|...|..+++.|.+|.++++++
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998764

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.97  E-value=0.077  Score=39.72  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=29.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCC---eEEEEcCCchhHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCDE   38 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~---~V~~~dr~~~~~~~   38 (226)
                      .||.|||.|.-|..++.+|.+.|.   +.+..|-+.+.+..
T Consensus        16 ~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~   56 (209)
T d2vapa1          16 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIR   56 (209)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHT
T ss_pred             CcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhc
Confidence            479999999999999999998875   34555766655443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.93  E-value=0.08  Score=41.25  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |.|||.|..|...|..|+++|++|.++++.+.
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~   50 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPV   50 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            78999999999999999999999999998653

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=91.93  E-value=0.5  Score=32.62  Aligned_cols=93  Identities=10%  Similarity=-0.021  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCC-----HHHHHHHhhcccccccccC
Q 027255           11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLAD-----PAAALSVVFDKGGVLEQIC   85 (226)
Q Consensus        11 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~-----~~~~~~v~~~~~~l~~~l~   85 (226)
                      |...++..|...|++|.+++.+....+.           ....+.++|.|++..|+     ...++..+   +.+...-.
T Consensus        19 ~A~~Ia~~l~~~g~ev~~~~~~~~~~~~-----------~~~~l~~~d~vi~Gspt~~~~~~~~~~~~l---~~~~~~~~   84 (152)
T d1e5da1          19 MARVLAESFRDEGCTVKLMWCKACHHSQ-----------IMSEISDAGAVIVGSPTHNNGILPYVAGTL---QYIKGLRP   84 (152)
T ss_dssp             HHHHHHHHHHHTTCEEEEEETTTSCHHH-----------HHHHHHTCSEEEEECCCBTTBCCHHHHHHH---HHHHHTCC
T ss_pred             HHHHHHHHHhhCCCEEEEeecccCChhh-----------hccchhhCCEEEEeccccCCccCchhHHHH---HHhhccCC
Confidence            5667788888899999998876433222           12335689999999986     33455555   22222112


Q ss_pred             CCcEEEecCC--CCHHHHHHHHHHHHhcCCcEEe
Q 027255           86 PGKGYIDMST--VDHETSIKISRAITSKGGHFLE  117 (226)
Q Consensus        86 ~g~ivvd~st--~~~~~~~~l~~~~~~~g~~~ld  117 (226)
                      +++.+.-.++  ........+.+.+.+.|...+.
T Consensus        85 ~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~  118 (152)
T d1e5da1          85 QNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPA  118 (152)
T ss_dssp             CSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCS
T ss_pred             CCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEec
Confidence            4444332222  3456678899999998887654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.92  E-value=0.19  Score=38.12  Aligned_cols=40  Identities=20%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHC
Q 027255            3 VGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH   42 (226)
Q Consensus         3 IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~   42 (226)
                      |-|.|. +.+|.++|+.|++.|+  .|++..|+.++.+++.+.
T Consensus         6 ilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~   48 (250)
T d1yo6a1           6 VVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI   48 (250)
T ss_dssp             EEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh
Confidence            444454 8899999999999996  577789999988887653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.74  E-value=0.091  Score=41.57  Aligned_cols=30  Identities=23%  Similarity=0.248  Sum_probs=26.5

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCeEEEEcC
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      +|-|.| .|.+|+.+++.|.+.||+|++.||
T Consensus        18 ~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            566665 599999999999999999999986

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.59  E-value=0.089  Score=38.23  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      +|.|||.|.-|..-|..+++.|.+|.++++.+
T Consensus         7 ~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           7 RLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            69999999999999999999999999998654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.57  E-value=0.097  Score=39.01  Aligned_cols=32  Identities=28%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |.|||.|.-|...|..+++.|++|.++++.+.
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            78999999999999999999999999987653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.54  E-value=0.091  Score=41.65  Aligned_cols=29  Identities=28%  Similarity=0.533  Sum_probs=27.5

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcC
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      |.|||.|.-|..+|.+|+++|++|.+..+
T Consensus         7 viIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           7 VVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            78999999999999999999999999975

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.29  Score=33.43  Aligned_cols=88  Identities=15%  Similarity=0.146  Sum_probs=58.0

Q ss_pred             CeEEEEecCh-----------hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255            1 MEVGFLGLGI-----------MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (226)
Q Consensus         1 m~IgvIG~G~-----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~   69 (226)
                      .||-|||.|.           .+...++.|.+.|+++++.|.||+.+          .++.    +-+|-+..---+.+.
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV----------std~----d~aD~lYfePlt~e~   73 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI----------MTDP----EMADATYIEPIHWEV   73 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG----------GGCG----GGSSEEECSCCCHHH
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh----------hcCh----hhcceeeeecCCHHH
Confidence            3789999974           57788899999999999999999753          2332    235666653336677


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG  112 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g  112 (226)
                      +.+++.       .-+|..+++.   ..-.+...++..+.+.|
T Consensus        74 v~~Ii~-------~E~pd~il~~---~GGQtalnla~~L~~~g  106 (127)
T d1a9xa3          74 VRKIIE-------KERPDAVLPT---MGGQTALNCALELERQG  106 (127)
T ss_dssp             HHHHHH-------HHCCSEEECS---SSHHHHHHHHHHHHHTT
T ss_pred             HHHHHH-------HhCcCCeEEE---eeeehHhHHHHHHHHcC
Confidence            878772       2245555543   34455556666655543

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.25  E-value=0.13  Score=36.22  Aligned_cols=63  Identities=16%  Similarity=0.013  Sum_probs=44.1

Q ss_pred             CeEEEEecCh---hHHHHHHHHHhCCCeEEEEcCCch---hHHHHHHC--CCcccCCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGLGI---MGKAISMNLLRNGFKVTVWNRTLS---KCDELVAH--GATVGGSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~G~---mG~~~A~~l~~~G~~V~~~dr~~~---~~~~l~~~--g~~~~~s~~~~~~~advvi~~   63 (226)
                      .||+|||=+.   +...++..+.+-|.++.++-..+.   ..+.+...  .+..+.++.++++++|+|.+.
T Consensus         4 l~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           4 LVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             CEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            4899999854   799999999999988665432211   11222223  456678999999999988754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.23  E-value=0.13  Score=38.75  Aligned_cols=87  Identities=17%  Similarity=0.163  Sum_probs=51.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCc--c-cCCHHHHh--hhCCeEEEec-----CCH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GAT--V-GGSPAEVI--KKCTITIGML-----ADP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~--~-~~s~~~~~--~~advvi~~~-----p~~   67 (226)
                      +|.=||||. |. ++..|+++|++|+++|.+++-++.+++.    +..  . ..+..++-  +..|+|++..     .+.
T Consensus        44 ~iLDiGcGt-G~-~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~~  121 (251)
T d1wzna1          44 RVLDLACGT-GI-PTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDE  121 (251)
T ss_dssp             EEEEETCTT-CH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSCH
T ss_pred             EEEEeCCCC-Cc-cchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhcCCh
Confidence            577899997 54 4667889999999999999877655442    322  1 22222221  2346666532     222


Q ss_pred             HHHHHHhhcccccccccCCCc-EEEec
Q 027255           68 AAALSVVFDKGGVLEQICPGK-GYIDM   93 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~-ivvd~   93 (226)
                      +....++   ..+...|+||. ++++.
T Consensus       122 ~~~~~~L---~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         122 EDLRKLF---SKVAEALKPGGVFITDF  145 (251)
T ss_dssp             HHHHHHH---HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHH---HHHHHHcCCCcEEEEEe
Confidence            3344555   55556666654 44544

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.22  E-value=0.29  Score=34.31  Aligned_cols=64  Identities=17%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             eEEEEec---ChhHHHHHHHHHhCCCeEEEEcCC-----chhHHHHHHCC--CcccCCHHHHhhhCCeEEEecC
Q 027255            2 EVGFLGL---GIMGKAISMNLLRNGFKVTVWNRT-----LSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~---G~mG~~~A~~l~~~G~~V~~~dr~-----~~~~~~l~~~g--~~~~~s~~~~~~~advvi~~~p   65 (226)
                      ||+|||=   ++....++..+.+-|.+++++.+.     ++..+.+.+.+  +..+.++.++++++|+|.+-..
T Consensus         6 ~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           6 KIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             EEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             EEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            7999998   578899999999999999888653     22233444444  4467899999999998877654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.21  E-value=0.18  Score=36.52  Aligned_cols=105  Identities=17%  Similarity=0.182  Sum_probs=64.1

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH----CCC----cc-cCCHHHHh---hhCCeEEEecCCHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HGA----TV-GGSPAEVI---KKCTITIGMLADPAA   69 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----~g~----~~-~~s~~~~~---~~advvi~~~p~~~~   69 (226)
                      +|.=||+|.=...+  .|++.+.+|+.+|++++.++.+++    .|.    ++ ..+..+..   ...|.|++..+. ..
T Consensus        36 ~VLDiGcGsG~~s~--~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~-~~  112 (186)
T d1l3ia_          36 VAVDVGCGTGGVTL--ELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG-GE  112 (186)
T ss_dssp             EEEEESCTTSHHHH--HHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT-TC
T ss_pred             EEEEEECCeEcccc--cccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc-cc
Confidence            45567777654444  355667799999999998776654    343    22 34444443   357888877654 44


Q ss_pred             HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCC
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG  113 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~  113 (226)
                      .++++   +.+...+++|..++- +....+....+.+.+.+.+.
T Consensus       113 ~~~~~---~~~~~~LkpgG~lvi-~~~~~e~~~~~~~~l~~~~~  152 (186)
T d1l3ia_         113 LQEIL---RIIKDKLKPGGRIIV-TAILLETKFEAMECLRDLGF  152 (186)
T ss_dssp             HHHHH---HHHHHTEEEEEEEEE-EECBHHHHHHHHHHHHHTTC
T ss_pred             chHHH---HHHHHHhCcCCEEEE-EeeccccHHHHHHHHHHcCC
Confidence            55665   555666777664432 22445566666777777654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=91.10  E-value=0.1  Score=36.92  Aligned_cols=61  Identities=13%  Similarity=0.039  Sum_probs=46.5

Q ss_pred             CeEEEEec---ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGL---GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~---G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~   64 (226)
                      ++|+|||=   +++...++..+.+-|.++++..+..=..   .........+++++++++|+|.+..
T Consensus         4 l~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~---~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           4 LTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD---EENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc---cccceeEEEechhccccCceeeeeE
Confidence            58999997   5799999999999999988876542211   1234567788999999999887643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.06  E-value=0.1  Score=38.81  Aligned_cols=31  Identities=23%  Similarity=0.128  Sum_probs=28.8

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |.|||.|.-|...|..+++.|++|.+++..+
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            6899999999999999999999999998654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.01  E-value=0.1  Score=41.61  Aligned_cols=29  Identities=14%  Similarity=0.194  Sum_probs=27.5

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcC
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      |-|||.|.-|..+|.+|+++|++|.+..+
T Consensus         5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           5 AVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            67999999999999999999999999986

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.00  E-value=0.11  Score=40.90  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |.|||.|.-|...|..|+++|++|.+.++.+.
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999999999999999998653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.92  E-value=0.08  Score=40.52  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             EEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            4 GFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         4 gvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      -|-|. +.+|.++|+.|++.|++|.+.+|+.++.+++.+
T Consensus         4 lVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~   42 (252)
T d1zmta1           4 IVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA   42 (252)
T ss_dssp             EESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence            34455 559999999999999999999999888877654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.87  E-value=0.11  Score=38.19  Aligned_cols=61  Identities=20%  Similarity=0.150  Sum_probs=38.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCCcccCCHHHHh----hhCCeEEEec
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGATVGGSPAEVI----KKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~----~~advvi~~~   64 (226)
                      +||.|+|. |.+|+.+++.|.++|+  +|+...|++....  ... -....+..+..    ...|.|+.|+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~--~~~-~~~~~d~~~~~~~~~~~~d~vi~~~   70 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH--PRL-DNPVGPLAELLPQLDGSIDTAFCCL   70 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC--TTE-ECCBSCHHHHGGGCCSCCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc--ccc-cccccchhhhhhccccchheeeeee
Confidence            58999988 9999999999999998  4555565543210  000 01122333333    2468998886

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.80  E-value=0.11  Score=37.47  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=29.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +|.|||.|+.|..-|..+++.|.+|+++++.+.
T Consensus         7 dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           7 KLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            589999999999999999999999999987543

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

Probab=90.64  E-value=1.4  Score=29.50  Aligned_cols=91  Identities=10%  Similarity=0.049  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCH-------HHHHHHhhcccccccc
Q 027255           11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP-------AAALSVVFDKGGVLEQ   83 (226)
Q Consensus        11 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~-------~~~~~v~~~~~~l~~~   83 (226)
                      |...++..|.+.|++|.+++.+.-              ++.++ .++|.|++.+|+-       ......+   +.+...
T Consensus        16 ~A~~ia~~l~~~g~~v~~~~~~~~--------------~~~~l-~~~d~ii~g~pT~~~g~~p~~~~~~~~---~~~~~~   77 (137)
T d2fz5a1          16 MANEIEAAVKAAGADVESVRFEDT--------------NVDDV-ASKDVILLGCPAMGSEELEDSVVEPFF---TDLAPK   77 (137)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETTSC--------------CHHHH-HTCSEEEEECCCBTTTBCCHHHHHHHH---HHHGGG
T ss_pred             HHHHHHHHHHhcCCceEEeehhhH--------------HHhhh-hccceEEEEEecccCCcCChhHHHHHH---HHhccc
Confidence            566778888888999998876542              23343 5689999988751       2233333   222233


Q ss_pred             cCCCcE---EEecCCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255           84 ICPGKG---YIDMSTVDHETSIKISRAITSKGGHFLEAPV  120 (226)
Q Consensus        84 l~~g~i---vvd~st~~~~~~~~l~~~~~~~g~~~ld~pv  120 (226)
                      + +++.   +...........+.+.+.+.+.|...+..|+
T Consensus        78 ~-~gk~~~~fgs~g~~~~~a~~~l~~~l~~~G~~~v~~~~  116 (137)
T d2fz5a1          78 L-KGKKVGLFGSYGWGSGEWMDAWKQRTEDTGATVIGTAI  116 (137)
T ss_dssp             C-SSCEEEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             c-CCCeEEEEEecCCCcCHHHHHHHHHHHHCCCEEeecee
Confidence            3 3443   2223334567778899999999998876544

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.61  E-value=0.14  Score=38.57  Aligned_cols=35  Identities=14%  Similarity=0.117  Sum_probs=29.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      ++|-|.|. +.+|.++|+.|+++|++|.+.|+++..
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            36777776 779999999999999999999887643

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.60  E-value=0.1  Score=41.92  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=26.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeE-EEEcC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKV-TVWNR   31 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V-~~~dr   31 (226)
                      |||-|.|. |.+|+.+++.|+++||+| .+.|+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            89999965 999999999999999974 45554

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.42  E-value=0.15  Score=36.27  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=28.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      .|.|||.|..|...|..+.+.|.+|.++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3789999999999999999999999999864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=90.38  E-value=0.17  Score=39.07  Aligned_cols=106  Identities=11%  Similarity=0.029  Sum_probs=63.4

Q ss_pred             CeEEEEecCh--hHHHHHHHHHhCCCeEEEEcCCchhHHHHHH----CCCc-----ccCCHHHHh--hhCCeEEEecCCH
Q 027255            1 MEVGFLGLGI--MGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HGAT-----VGGSPAEVI--KKCTITIGMLADP   67 (226)
Q Consensus         1 m~IgvIG~G~--mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----~g~~-----~~~s~~~~~--~~advvi~~~p~~   67 (226)
                      ++|.=+|+|.  +...+|+.+... -+|+.+|.+++.++...+    .|..     ...+..+..  ..+|.|++-+|++
T Consensus       105 ~~VLDiG~GsG~lt~~lA~~~~~~-G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~p~p  183 (266)
T d1o54a_         105 DRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP  183 (266)
T ss_dssp             CEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCSCG
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecCCCH
Confidence            3566677655  444554444333 489999999998776543    2321     112222221  3478899999987


Q ss_pred             HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                      ..+   +   +.+...|+||..++-.+. ..+..+++.+.+++.|..
T Consensus       184 ~~~---l---~~~~~~LKpGG~lv~~~P-~~~Qv~~~~~~l~~~gF~  223 (266)
T d1o54a_         184 WNY---I---DKCWEALKGGGRFATVCP-TTNQVQETLKKLQELPFI  223 (266)
T ss_dssp             GGT---H---HHHHHHEEEEEEEEEEES-SHHHHHHHHHHHHHSSEE
T ss_pred             HHH---H---HHHHhhcCCCCEEEEEeC-cccHHHHHHHHHHHCCce
Confidence            533   2   333466777766554332 356777888888887743

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.099  Score=40.70  Aligned_cols=32  Identities=28%  Similarity=0.288  Sum_probs=27.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      +||.|.|. |.+|+.+++.|+++||.|++.++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            47888865 999999999999999998877644

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.26  E-value=0.29  Score=31.28  Aligned_cols=34  Identities=24%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      |||.|||-|.=-.+||..|.+..++|+++--|+.
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~G   34 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAG   34 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCcc
Confidence            8999999999999999999999999998844543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.18  E-value=0.14  Score=41.57  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             EEEEecChhHHHHHHHHHh------CCCeEEEEcCCch
Q 027255            3 VGFLGLGIMGKAISMNLLR------NGFKVTVWNRTLS   34 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~------~G~~V~~~dr~~~   34 (226)
                      |.|||.|.-|...|..|++      +|++|.++++...
T Consensus        35 ViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             EEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            7899999999999999997      8999999998754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.17  E-value=0.15  Score=38.63  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=32.7

Q ss_pred             Ce-EEEEec-ChhHHHHHHHHH---hCCCeEEEEcCCchhHHHHH
Q 027255            1 ME-VGFLGL-GIMGKAISMNLL---RNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         1 m~-IgvIG~-G~mG~~~A~~l~---~~G~~V~~~dr~~~~~~~l~   40 (226)
                      || |-|.|. ..+|.++|+.|+   +.|+.|++.+|++++.+++.
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~   46 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE   46 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence            44 766676 789999999996   47999999999998877654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.15  E-value=0.12  Score=38.09  Aligned_cols=31  Identities=13%  Similarity=0.115  Sum_probs=28.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      .|-|||.|..|...|..+++.|.+|.++++.
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            3789999999999999999999999999875

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=90.15  E-value=0.043  Score=43.31  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhCCCeE
Q 027255            1 MEVGFLG-LGIMGKAISMNLLRNGFKV   26 (226)
Q Consensus         1 m~IgvIG-~G~mG~~~A~~l~~~G~~V   26 (226)
                      |||-|.| .|.+|+.+++.|+++||+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v   27 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPD   27 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence            8998996 5999999999999999854

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.15  E-value=0.16  Score=37.16  Aligned_cols=31  Identities=23%  Similarity=0.220  Sum_probs=28.5

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |.|||.|..|...|..+++.|.+|.++++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            6799999999999999999999999998753

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.14  E-value=0.39  Score=34.00  Aligned_cols=64  Identities=13%  Similarity=0.127  Sum_probs=44.0

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCC-----chhHHHHHHC------CCcccCCHHHHhhhCCeEEEec
Q 027255            1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRT-----LSKCDELVAH------GATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~-----~~~~~~l~~~------g~~~~~s~~~~~~~advvi~~~   64 (226)
                      .||+|||-| ++...++..+.+-|.+++++.+.     ++..+.+.+.      ....+.++.++++++|+|..-.
T Consensus         5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            479999974 35566666777789999988642     2223333221      2466889999999999888654

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=90.12  E-value=0.53  Score=32.38  Aligned_cols=95  Identities=8%  Similarity=0.081  Sum_probs=58.1

Q ss_pred             hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCH-----HHHHHHhhccccccccc
Q 027255           10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP-----AAALSVVFDKGGVLEQI   84 (226)
Q Consensus        10 ~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~-----~~~~~v~~~~~~l~~~l   84 (226)
                      .|...|+..+.+.|++|.+++.+....+.+           ...+.++|.|++.+|+.     ..++..+   +.+...-
T Consensus        18 ~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~-----------~~~~~~~d~ii~Gspt~~g~~~~~~~~~l---~~l~~~~   83 (149)
T d1ycga1          18 KMAHALMDGLVAGGCEVKLFKLSVSDRNDV-----------IKEILDARAVLVGSPTINNDILPVVSPLL---DDLVGLR   83 (149)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEGGGSCHHHH-----------HHHHHHCSEEEEECCCBTTBCCGGGHHHH---HHHHHHC
T ss_pred             HHHHHHHHHHHhcCCeeEEEEccccchHHH-----------hhhhhhCCeEEEEeecccCCCCHHHHHHH---HHHhccc
Confidence            366778888888999999987664433222           22345799999999852     2344544   3332222


Q ss_pred             CCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEec
Q 027255           85 CPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        85 ~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+++.+.-.+  .......+.+.+.+...|...+..
T Consensus        84 ~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~  119 (149)
T d1ycga1          84 PKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAE  119 (149)
T ss_dssp             CSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCS
T ss_pred             cCCCEEEEEecccCCchhHHHHHHHHHHCCCEEecc
Confidence            2344332222  223456778888999888877643

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=90.09  E-value=0.39  Score=34.67  Aligned_cols=65  Identities=14%  Similarity=0.138  Sum_probs=47.5

Q ss_pred             CeEEEEecC--hhHHHHHHHHHhCCCeEEEEcCC-----chhHHHH----HHCC--CcccCCHHHHhhhCCeEEEecC
Q 027255            1 MEVGFLGLG--IMGKAISMNLLRNGFKVTVWNRT-----LSKCDEL----VAHG--ATVGGSPAEVIKKCTITIGMLA   65 (226)
Q Consensus         1 m~IgvIG~G--~mG~~~A~~l~~~G~~V~~~dr~-----~~~~~~l----~~~g--~~~~~s~~~~~~~advvi~~~p   65 (226)
                      .||+|+|=|  +|...++..+..-|.+++++.+.     ++-.+.+    ...|  ...+.+++++++++|+|.+-+-
T Consensus         6 l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w   83 (183)
T d1duvg2           6 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVW   83 (183)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCS
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEeh
Confidence            489999955  68899999998889999988652     1111111    2234  4568899999999999987654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=0.18  Score=36.46  Aligned_cols=43  Identities=21%  Similarity=0.221  Sum_probs=34.6

Q ss_pred             EEEE-ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255            3 VGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (226)
Q Consensus         3 IgvI-G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~   45 (226)
                      |.|. |.|..|+...+.....|.+|+...+++++.+.+.+.|+.
T Consensus        35 vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad   78 (177)
T d1o89a2          35 IVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS   78 (177)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE
T ss_pred             EEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc
Confidence            4444 559999988877778999999999999998888776654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.17  Score=37.08  Aligned_cols=30  Identities=20%  Similarity=0.109  Sum_probs=28.0

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      |.|||.|..|...|..+++.|.+|.+.++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            679999999999999999999999999864

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.12  Score=38.72  Aligned_cols=39  Identities=15%  Similarity=-0.008  Sum_probs=33.5

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~   42 (226)
                      +|-.+|||. | ..+..|++.|++|+.+|.++..++.+.+.
T Consensus        48 rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~   86 (229)
T d2bzga1          48 RVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTE   86 (229)
T ss_dssp             EEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             EEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence            688999998 4 46888999999999999999998877653

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.61  E-value=0.56  Score=33.70  Aligned_cols=83  Identities=19%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             EEEEe-cChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHH-HCCCcc-----cCCHHHHhhh-----CCeEEEecCCHHH
Q 027255            3 VGFLG-LGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELV-AHGATV-----GGSPAEVIKK-----CTITIGMLADPAA   69 (226)
Q Consensus         3 IgvIG-~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~-~~g~~~-----~~s~~~~~~~-----advvi~~~p~~~~   69 (226)
                      |-|.| .|.+|+...+.....|.+ |+....++++...+. +.|+..     ..+..+.++.     .|+|+-++- .+.
T Consensus        34 VLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-g~~  112 (187)
T d1vj1a2          34 MVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-GDI  112 (187)
T ss_dssp             EEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-HHH
T ss_pred             EEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-chh
Confidence            55666 699999877777778875 555677777766665 345432     2233333333     666776663 233


Q ss_pred             HHHHhhcccccccccCCCcEEEec
Q 027255           70 ALSVVFDKGGVLEQICPGKGYIDM   93 (226)
Q Consensus        70 ~~~v~~~~~~l~~~l~~g~ivvd~   93 (226)
                      .+..+       ..++++-.++.+
T Consensus       113 ~~~~~-------~~l~~~G~iv~~  129 (187)
T d1vj1a2         113 SNTVI-------SQMNENSHIILC  129 (187)
T ss_dssp             HHHHH-------TTEEEEEEEEEC
T ss_pred             HHHHh-------hhccccccEEEe
Confidence            44433       344455445544

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.59  E-value=0.18  Score=38.95  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=28.6

Q ss_pred             eEEEEecC---hhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255            2 EVGFLGLG---IMGKAISMNLLRNGFKVTVWNRTLSK   35 (226)
Q Consensus         2 ~IgvIG~G---~mG~~~A~~l~~~G~~V~~~dr~~~~   35 (226)
                      ++-|.|.+   .+|.++|+.|+++|.+|++.+|++..
T Consensus        10 ~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~   46 (297)
T d1d7oa_          10 RAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPAL   46 (297)
T ss_dssp             EEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred             EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhh
Confidence            45566875   59999999999999999999987654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.6  Score=36.99  Aligned_cols=108  Identities=11%  Similarity=0.005  Sum_probs=61.0

Q ss_pred             eEEEEec--ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----C--------------Ccc-cCCH----HHHh-h
Q 027255            2 EVGFLGL--GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G--------------ATV-GGSP----AEVI-K   55 (226)
Q Consensus         2 ~IgvIG~--G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g--------------~~~-~~s~----~~~~-~   55 (226)
                      +|.=+|+  |.+...||+.+...| .|+.+|++++.++..++.    +              +.. ..+.    .... .
T Consensus       101 rVLE~GtGsG~lt~~LAr~vg~~G-~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~  179 (324)
T d2b25a1         101 TVLEAGSGSGGMSLFLSKAVGSQG-RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSL  179 (324)
T ss_dssp             EEEEECCTTSHHHHHHHHHHCTTC-EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC------
T ss_pred             EEEEecccccHHHHHHHHHhCCCc-EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCC
Confidence            4444555  556666666665555 799999999877654321    0              111 1111    1111 2


Q ss_pred             hCCeEEEecCCHH-HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           56 KCTITIGMLADPA-AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        56 ~advvi~~~p~~~-~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ..|.||+=+|++. .+++       +...|+||..++-.+. ..+...++.+.+++.+..|.+-
T Consensus       180 ~fD~V~LD~p~P~~~l~~-------~~~~LKpGG~lv~~~P-~i~Qv~~~~~~l~~~~~~f~~i  235 (324)
T d2b25a1         180 TFDAVALDMLNPHVTLPV-------FYPHLKHGGVCAVYVV-NITQVIELLDGIRTCELALSCE  235 (324)
T ss_dssp             -EEEEEECSSSTTTTHHH-------HGGGEEEEEEEEEEES-SHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CcceEeecCcCHHHHHHH-------HHHhccCCCEEEEEeC-CHHHHHHHHHHHHHcCCCceee
Confidence            4689999888764 3333       3466778776654332 2356677788887666545433

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.53  E-value=0.71  Score=33.73  Aligned_cols=91  Identities=10%  Similarity=0.066  Sum_probs=59.1

Q ss_pred             HHHHHHhCCCeEEEEc-C--Cch-hHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEE
Q 027255           15 ISMNLLRNGFKVTVWN-R--TLS-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGY   90 (226)
Q Consensus        15 ~A~~l~~~G~~V~~~d-r--~~~-~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~iv   90 (226)
                      .++.|.+.||+|++=. -  ... .=+...+.|+.+.++.+++. ++|+|+..-|...  ++        ...+++|+++
T Consensus        22 ~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~--~e--------~~~lk~~~~l   90 (193)
T d1pjca2          22 SVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP--AE--------YDLMQKDQLL   90 (193)
T ss_dssp             HHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG--GG--------GGGCCTTCEE
T ss_pred             HHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH--HH--------HHhhhcCceE
Confidence            4678889999998752 1  111 11345556999999888877 5897775543311  11        2567899999


Q ss_pred             EecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           91 IDMSTVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        91 vd~st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      +..-.  |....++.+.+.++++..++-
T Consensus        91 i~~l~--p~~~~ell~~l~~~~it~~s~  116 (193)
T d1pjca2          91 FTYLH--LAAARELTEQLMRVGLTAIAY  116 (193)
T ss_dssp             EECCC--GGGCHHHHHHHHHHTCEEEEG
T ss_pred             EEecC--cccchHHHHHHHHcCCEEEEe
Confidence            87643  444556777777888876655

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=89.53  E-value=0.17  Score=40.41  Aligned_cols=29  Identities=17%  Similarity=0.298  Sum_probs=27.3

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcC
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      +-|||.|.-|..+|.+|+++|++|++..+
T Consensus        10 vIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1          10 ALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            56999999999999999999999999986

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.31  E-value=0.26  Score=38.99  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=28.8

Q ss_pred             eEEEE-ecC---hhHHHHHHHHHhCCCeEEEEcCCchhH
Q 027255            2 EVGFL-GLG---IMGKAISMNLLRNGFKVTVWNRTLSKC   36 (226)
Q Consensus         2 ~IgvI-G~G---~mG~~~A~~l~~~G~~V~~~dr~~~~~   36 (226)
                      ||++| |.|   .+|.++|+.|+++|.+|.+.+++....
T Consensus         3 kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~   41 (329)
T d1uh5a_           3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYN   41 (329)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred             cEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhh
Confidence            57766 765   699999999999999999988776543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.30  E-value=0.14  Score=40.17  Aligned_cols=33  Identities=18%  Similarity=0.352  Sum_probs=29.5

Q ss_pred             eEEEEecChhHHHHHHHHHh--CCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~   34 (226)
                      .|.|||.|.-|..-|..|++  .|++|+++++++.
T Consensus        52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            48999999999999999996  4999999998764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.28  E-value=0.2  Score=38.09  Aligned_cols=30  Identities=23%  Similarity=0.261  Sum_probs=28.3

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      +.|||.|.-|...|..+++.|.+|.+++++
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            679999999999999999999999999975

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.09  E-value=0.4  Score=36.01  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=63.2

Q ss_pred             CeEEEEecCh--hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcc----cCCHH---HHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGI--MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATV----GGSPA---EVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~--mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~----~~s~~---~~~~~advvi~~~p~   66 (226)
                      ++|.=+|+|.  .-..+|.. ... -.|+..|.++..++.+.+.     ++.+    ...+.   +.....|+++..+..
T Consensus        76 ~~VLDlGcGsG~~~~~la~~-~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~  153 (230)
T d1g8sa_          76 SKILYLGASAGTTPSHVADI-ADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQ  153 (230)
T ss_dssp             CEEEEESCCSSHHHHHHHHH-TTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS
T ss_pred             CEEEEeCEEcCHHHHHHHHh-CCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccc
Confidence            4678888865  34444543 223 3899999999988877653     1111    12222   222234445555555


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEec-------CCCCHH-HHHHHHHHHHhcCCcEEec
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDM-------STVDHE-TSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~-------st~~~~-~~~~l~~~~~~~g~~~ld~  118 (226)
                      ....+.++   ..+...|++|..++-.       ++..|. ...+..+.+++.|...++.
T Consensus       154 ~~~~~~~l---~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~  210 (230)
T d1g8sa_         154 PNQAEILI---KNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE  210 (230)
T ss_dssp             TTHHHHHH---HHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             hHHHHHHH---HHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            45555555   5555667777654322       234443 3345556777788877665

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.00  E-value=0.28  Score=37.82  Aligned_cols=102  Identities=13%  Similarity=0.093  Sum_probs=63.2

Q ss_pred             eEEEEec--ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----------CCc-ccCCHHHH---hhhCCeEEEecC
Q 027255            2 EVGFLGL--GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----------GAT-VGGSPAEV---IKKCTITIGMLA   65 (226)
Q Consensus         2 ~IgvIG~--G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----------g~~-~~~s~~~~---~~~advvi~~~p   65 (226)
                      +|.=+|+  |.+...+|+.+...| +|+.+|.+++.++...+.          .+. ...+..+.   -...|.||+-+|
T Consensus        99 ~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ldlp  177 (264)
T d1i9ga_          99 RVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDML  177 (264)
T ss_dssp             EEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEESS
T ss_pred             EEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEEecC
Confidence            4444554  677777788776666 799999999987765431          111 12222221   134799999999


Q ss_pred             CHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255           66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK  111 (226)
Q Consensus        66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~  111 (226)
                      ++..+   +   +.+...|++|..++-.+ -..+..+++.+.++..
T Consensus       178 ~P~~~---l---~~~~~~LkpGG~lv~~~-P~i~Qv~~~~~~l~~~  216 (264)
T d1i9ga_         178 APWEV---L---DAVSRLLVAGGVLMVYV-ATVTQLSRIVEALRAK  216 (264)
T ss_dssp             CGGGG---H---HHHHHHEEEEEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             CHHHH---H---HHHHhccCCCCEEEEEe-CccChHHHHHHHHHHc
Confidence            97543   2   33346677877665443 3445677777777644

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.95  E-value=0.065  Score=38.51  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=24.4

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEE
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVW   29 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~   29 (226)
                      +|.|||.|..|..+|..|.+.|+++.+.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~   32 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLIT   32 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEE
Confidence            5899999999999999999999775544

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.93  E-value=0.2  Score=37.05  Aligned_cols=28  Identities=21%  Similarity=0.532  Sum_probs=26.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEE
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTV   28 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~   28 (226)
                      |||.|+|...+|..+.+.|.++||+|..
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~   28 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVG   28 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEE
Confidence            9999999999999999999999999764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.78  E-value=0.19  Score=36.72  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |.|||.|.-|..-|..+++.|++|.++++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            7899999999999999999999999998754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.72  E-value=0.15  Score=38.46  Aligned_cols=88  Identities=14%  Similarity=0.091  Sum_probs=55.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH----CC--Ccc-cCCHHHH--hhhCCeEEEe------cCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HG--ATV-GGSPAEV--IKKCTITIGM------LAD   66 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----~g--~~~-~~s~~~~--~~~advvi~~------~p~   66 (226)
                      +|.=||||. | .++..|++.|.+|+++|.+++.++.+++    .+  +.. ..+..+.  -+..|+|+++      +++
T Consensus        40 ~vLDiGCG~-G-~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~  117 (246)
T d1y8ca_          40 DYLDLACGT-G-NLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIID  117 (246)
T ss_dssp             EEEEETCTT-S-TTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCCS
T ss_pred             eEEEEeCcC-C-HHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeeccCC
Confidence            577788884 3 2667888899999999999987665443    23  222 2333332  1245877763      345


Q ss_pred             HHHHHHHhhcccccccccCCCc-EEEecC
Q 027255           67 PAAALSVVFDKGGVLEQICPGK-GYIDMS   94 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~-ivvd~s   94 (226)
                      ......++   ..+...|+||. ++++..
T Consensus       118 ~~~~~~~l---~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         118 SDDLKKYF---KAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             HHHHHHHH---HHHHTTEEEEEEEEEEEE
T ss_pred             HHHHHHHH---HHHHHhCCCCeEEEEEeC
Confidence            55666666   66777787765 455553

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=88.36  E-value=1.4  Score=30.77  Aligned_cols=106  Identities=13%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             eEEEEec-ChhHHHHHHHHHhC--CCeEEE--EcCCchhHHHHHHC-C-------------------------CcccC--
Q 027255            2 EVGFLGL-GIMGKAISMNLLRN--GFKVTV--WNRTLSKCDELVAH-G-------------------------ATVGG--   48 (226)
Q Consensus         2 ~IgvIG~-G~mG~~~A~~l~~~--G~~V~~--~dr~~~~~~~l~~~-g-------------------------~~~~~--   48 (226)
                      +|.|+|. |.+|+.-..-+.++  .|+|..  .++|-+.+.+.... .                         .....  
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g~   82 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQ   82 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEESH
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccCh
Confidence            4999996 99999988888765  366654  46776665543322 1                         11111  


Q ss_pred             -CHHHHhh--hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255           49 -SPAEVIK--KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH  114 (226)
Q Consensus        49 -s~~~~~~--~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~  114 (226)
                       +..+++.  ++|+|+.+.+...-++.++       ..++.|+.+.-.+.-+.-..-.+...+.+.+..
T Consensus        83 ~~l~~~~~~~~~D~vi~AI~G~aGL~~t~-------~aik~gk~iaLANKEslV~aG~i~~~~~k~~~~  144 (151)
T d1q0qa2          83 QAACDMAALEDVDQVMAAIVGAAGLLPTL-------AAIRAGKTILLANKDMRTPIAHTMAWPNRVNSG  144 (151)
T ss_dssp             HHHHHHHTCTTCCEEEECCSSGGGHHHHH-------HHHHTTCEEEECCHCTHHHHHHHHHTTSCCCCS
T ss_pred             HHHHHHhcCCCCCEEEEecCcccHHHHHH-------HHHhcCCeEEEEccHHHHhHHHHHHHHHHhCCc
Confidence             1222222  4688888887766666665       445566666555543333322333334444433

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=88.17  E-value=1.3  Score=31.73  Aligned_cols=36  Identities=19%  Similarity=0.015  Sum_probs=26.3

Q ss_pred             eEEEE--ecChhHHHHHHHHHhCCCeEEEEcCCchhHH
Q 027255            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCD   37 (226)
Q Consensus         2 ~IgvI--G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~   37 (226)
                      +|.|+  |.|.+|....+.....|.+|+..-++++..+
T Consensus        31 ~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~   68 (189)
T d1gu7a2          31 DWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD   68 (189)
T ss_dssp             CEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHH
T ss_pred             EEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccc
Confidence            46677  5688888777777678999988776665543

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=88.03  E-value=0.24  Score=39.61  Aligned_cols=30  Identities=27%  Similarity=0.231  Sum_probs=27.3

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCC
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~   32 (226)
                      +-|||.|.-|..+|.+|+++|++|.+..+-
T Consensus         5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            569999999999999999999999998654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.95  E-value=1.1  Score=32.97  Aligned_cols=113  Identities=12%  Similarity=0.055  Sum_probs=59.9

Q ss_pred             CeEEEEecChhHHH--HHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcc----cCCHH---HHhhhCCeEEEecCC
Q 027255            1 MEVGFLGLGIMGKA--ISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATV----GGSPA---EVIKKCTITIGMLAD   66 (226)
Q Consensus         1 m~IgvIG~G~mG~~--~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~----~~s~~---~~~~~advvi~~~p~   66 (226)
                      ++|.=||+|.=+..  ++... ..| +|+.+|.+++.++.+.+.     ++.+    ..++.   ......|+|+..++.
T Consensus        58 ~~VLDlGcG~G~~~~~la~~v-~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~~~  135 (209)
T d1nt2a_          58 ERVLYLGAASGTTVSHLADIV-DEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ  135 (209)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT-TTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCS
T ss_pred             CEEEEeCCcCCHHHHHHHHhc-cCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecccC
Confidence            46788888765433  33322 344 899999999988766442     2211    12222   223345556555555


Q ss_pred             HHHHHHHhhcccccccccCCCcEEEec-------CCCCHHHHHHHHHHHHhcCCcEEec
Q 027255           67 PAAALSVVFDKGGVLEQICPGKGYIDM-------STVDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~-------st~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      ....+.++   ..+...+++|..++-+       ++..|....+-.....+.|...++.
T Consensus       136 ~~~~~~~l---~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~  191 (209)
T d1nt2a_         136 KNQIEILK---ANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKH  191 (209)
T ss_dssp             TTHHHHHH---HHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             hhhHHHHH---HHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            55555555   5555677777654321       2334443333222222457766653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.31  Score=33.39  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=27.9

Q ss_pred             eEEEEecChhHHHHHHHHHh----CCCeEEEEcCCch
Q 027255            2 EVGFLGLGIMGKAISMNLLR----NGFKVTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~----~G~~V~~~dr~~~   34 (226)
                      +|.|||.|..|..+|..|.+    .|.+|++.++++.
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            68999999999999988863    5889999877654

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=87.33  E-value=0.29  Score=39.27  Aligned_cols=30  Identities=40%  Similarity=0.530  Sum_probs=24.8

Q ss_pred             CeEEEEe-------cChhH---HHHHHHHHhCCCeEEEEc
Q 027255            1 MEVGFLG-------LGIMG---KAISMNLLRNGFKVTVWN   30 (226)
Q Consensus         1 m~IgvIG-------~G~mG---~~~A~~l~~~G~~V~~~d   30 (226)
                      |||.+|+       .|.+|   ..+|+.|++.||+|+++-
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvt   40 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT   40 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence            8999988       37666   567999999999999874

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.27  E-value=0.2  Score=36.99  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC---eEEEEcCCchhHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCD   37 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~---~V~~~dr~~~~~~   37 (226)
                      +|-|||.|..|..+..+|.+.|.   +.+.+|-+.+...
T Consensus         3 ~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~   41 (198)
T d1rq2a1           3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALL   41 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHH
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHh
Confidence            57899999999999999999875   4555566555443

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=87.08  E-value=0.39  Score=34.56  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=24.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhC----CCeEEEEc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRN----GFKVTVWN   30 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~----G~~V~~~d   30 (226)
                      |||||=|+|.+|+.+.+.+.+.    ..+|...|
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN   35 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN   35 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence            6999999999999999998864    34666554

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=86.73  E-value=0.28  Score=37.19  Aligned_cols=33  Identities=27%  Similarity=0.265  Sum_probs=26.5

Q ss_pred             eEEEEe-cChhHHHHHHHHHhCCCe-EEEEcCCch
Q 027255            2 EVGFLG-LGIMGKAISMNLLRNGFK-VTVWNRTLS   34 (226)
Q Consensus         2 ~IgvIG-~G~mG~~~A~~l~~~G~~-V~~~dr~~~   34 (226)
                      +|-|.| .|.+|..+|+.|+++|++ |.++.|+..
T Consensus        11 t~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~   45 (259)
T d2fr1a1          11 TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP   45 (259)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            355666 589999999999999984 777888643

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=86.62  E-value=0.26  Score=35.50  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=23.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC---CeEEEEc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG---FKVTVWN   30 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G---~~V~~~d   30 (226)
                      |||||=|+|.+|+.+.+.+....   .+|...|
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            79999999999999999887543   4555543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.57  E-value=0.27  Score=38.41  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |.|||.|..|..-|..++++|.+|.+.++.+
T Consensus        22 VvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          22 VLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7899999999999999999999999998764

>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Clostridium beijerinckii [TaxId: 1520]

Probab=86.51  E-value=1  Score=30.28  Aligned_cols=90  Identities=17%  Similarity=0.131  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCH-------HHHHHHhhcccccccc
Q 027255           11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP-------AAALSVVFDKGGVLEQ   83 (226)
Q Consensus        11 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~-------~~~~~v~~~~~~l~~~   83 (226)
                      +...+|..|.+.|++|.+++.+...              +.+ +.++|.+++.+|+.       ..+...+   +.+...
T Consensus        15 vA~~ia~~l~~~g~~v~~~~~~~~~--------------~~~-l~~~~~~i~g~pt~~~g~~p~~~~~~~~---~~~~~~   76 (138)
T d5nula_          15 MAELIAKGIIESGKDVNTINVSDVN--------------IDE-LLNEDILILGCSAMTDEVLEESEFEPFI---EEISTK   76 (138)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEGGGCC--------------HHH-HTTCSEEEEEECCBTTTBCCTTTHHHHH---HHHGGG
T ss_pred             HHHHHHHHHHhcCCcceeccccccc--------------ccc-cccCCeEEEEEeccCCCCCChHHHHHHH---HHhCcc
Confidence            5567788888889999888765422              233 34689999988752       1233333   222233


Q ss_pred             cCCCcEEEec---CCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255           84 ICPGKGYIDM---STVDHETSIKISRAITSKGGHFLEAP  119 (226)
Q Consensus        84 l~~g~ivvd~---st~~~~~~~~l~~~~~~~g~~~ld~p  119 (226)
                      + +++.+.-.   ........+.+.+.+.+.|...+..|
T Consensus        77 ~-~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~  114 (138)
T d5nula_          77 I-SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETP  114 (138)
T ss_dssp             C-TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCC
T ss_pred             C-CCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCc
Confidence            3 44433222   22345667888899999988766543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=86.31  E-value=0.16  Score=37.73  Aligned_cols=85  Identities=18%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc--ccCCHHHHh---hhCCeEEEecCCHH---HHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT--VGGSPAEVI---KKCTITIGMLADPA---AALSV   73 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~--~~~s~~~~~---~~advvi~~~p~~~---~~~~v   73 (226)
                      +|.=||||. |. ++..|++.|++|+++|.+++.++.+++.+..  ...+..++-   ..-|+|+.+-..-.   ....+
T Consensus        45 ~vLDiGcG~-G~-~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~  122 (246)
T d2avna1          45 RVLDLGGGT-GK-WSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKA  122 (246)
T ss_dssp             EEEEETCTT-CH-HHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHH
T ss_pred             EEEEECCCC-ch-hcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhHHHH
Confidence            577789983 33 5668888999999999999998888776532  222332321   34577775421111   12233


Q ss_pred             hhcccccccccCCCcEEE
Q 027255           74 VFDKGGVLEQICPGKGYI   91 (226)
Q Consensus        74 ~~~~~~l~~~l~~g~ivv   91 (226)
                      +   .++...|++|.+++
T Consensus       123 l---~~i~r~Lk~gG~~i  137 (246)
T d2avna1         123 F---SEIRRVLVPDGLLI  137 (246)
T ss_dssp             H---HHHHHHEEEEEEEE
T ss_pred             H---HHHHhhcCcCcEEE
Confidence            4   44556677776544

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=85.98  E-value=0.47  Score=34.00  Aligned_cols=42  Identities=21%  Similarity=0.295  Sum_probs=32.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEc-C--CchhHHHHHHC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWN-R--TLSKCDELVAH   42 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~d-r--~~~~~~~l~~~   42 (226)
                      .||||=|+|.+|+.+.+.+.+.+.+|...+ .  +.+.+..+.+.
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlky   45 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKY   45 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHC
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhc
Confidence            389999999999999999999888877664 3  33445555543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=85.93  E-value=0.26  Score=35.03  Aligned_cols=39  Identities=13%  Similarity=-0.042  Sum_probs=32.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~   41 (226)
                      .+|-.||||.=-  .+..|+++|++|+++|.++..++.+++
T Consensus        22 ~rvLd~GCG~G~--~a~~la~~G~~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          22 ARVLVPLCGKSQ--DMSWLSGQGYHVVGAELSEAAVERYFT   60 (201)
T ss_dssp             CEEEETTTCCSH--HHHHHHHHCCEEEEEEECHHHHHHHHH
T ss_pred             CEEEEecCcCCH--HHHHHHHcCCceEeecccHHHHHHHHH
Confidence            368899998743  666888899999999999998887765

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=85.51  E-value=0.77  Score=35.77  Aligned_cols=43  Identities=21%  Similarity=0.239  Sum_probs=31.3

Q ss_pred             CeEEEEecChhH-----HHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255            1 MEVGFLGLGIMG-----KAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (226)
Q Consensus         1 m~IgvIG~G~mG-----~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~   44 (226)
                      |||.|.+.|.=|     .++|+.|.+.||+|++.. ++...+.+.+.|+
T Consensus         1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~-~~~~~~~v~~~g~   48 (401)
T d1iira_           1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCA-PPDCAERLAEVGV   48 (401)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC
T ss_pred             CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEe-CcchHHHHHHcCC
Confidence            899999988644     347999999999998876 3344444555554

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.02  E-value=1.3  Score=32.36  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=28.3

Q ss_pred             eEEEEecChhHHHHHHHHHhCCC---eEEEEcCCchhH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKC   36 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~---~V~~~dr~~~~~   36 (226)
                      +|-|||.|..|..++.+|.+.+.   +.+..|-+.+.+
T Consensus         3 ~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L   40 (198)
T d1ofua1           3 VIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQAL   40 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGG
T ss_pred             eEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHH
Confidence            58899999999999999999875   455667666554

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=84.99  E-value=0.44  Score=37.11  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=28.8

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~   33 (226)
                      |.|||.|.-|..-|..++++|.+|.+.+..+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            7899999999999999999999999998764

>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=84.85  E-value=1  Score=30.92  Aligned_cols=89  Identities=9%  Similarity=0.127  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCC--------HHHHHHHhhccccccc
Q 027255           11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLAD--------PAAALSVVFDKGGVLE   82 (226)
Q Consensus        11 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~--------~~~~~~v~~~~~~l~~   82 (226)
                      +...|+..|.+.|++|.+++.+.-              ++.+..+++|+||+.+|+        +......+   +.+..
T Consensus        17 ~A~~i~~~l~~~g~~v~~~~~~~~--------------~~~~~~~~~~~vii~~sT~g~g~~~~~~~~~~f~---~~l~~   79 (147)
T d1f4pa_          17 TAETIARELADAGYEVDSRDAASV--------------EAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLF---DSLEE   79 (147)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEGGGC--------------CSTTTTTTCSEEEEEECEECSSSCEECTTTHHHH---HTGGG
T ss_pred             HHHHHHHHHHHCCCeEEEEecccc--------------chhhhhcccCeEEEEecccCCcCCChhhhHHHhh---hcccc
Confidence            456677777788999998876532              122334568888887764        12355555   33333


Q ss_pred             ccCCCcEE--EecCC-C---CHHHHHHHHHHHHhcCCcEE
Q 027255           83 QICPGKGY--IDMST-V---DHETSIKISRAITSKGGHFL  116 (226)
Q Consensus        83 ~l~~g~iv--vd~st-~---~~~~~~~l~~~~~~~g~~~l  116 (226)
                      .-.++..+  +-+.. .   .-...+.+.+.+.+.|...+
T Consensus        80 ~~l~~~~~avfGlGds~y~~f~~a~~~l~~~l~~lGa~~v  119 (147)
T d1f4pa_          80 TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIV  119 (147)
T ss_dssp             SCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEEC
T ss_pred             ccccCCcEEEEecCCccHHHHhHHHHHHHHHHHhCCCEEe
Confidence            22245443  33322 2   23678889999998887654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=84.81  E-value=2.8  Score=30.64  Aligned_cols=103  Identities=16%  Similarity=0.240  Sum_probs=56.8

Q ss_pred             EEEEecChhHH-----HHHHHHHhCCCeEEEEcCCchh---HHHHHHC----CCcc-----cCCHHHH---------hhh
Q 027255            3 VGFLGLGIMGK-----AISMNLLRNGFKVTVWNRTLSK---CDELVAH----GATV-----GGSPAEV---------IKK   56 (226)
Q Consensus         3 IgvIG~G~mG~-----~~A~~l~~~G~~V~~~dr~~~~---~~~l~~~----g~~~-----~~s~~~~---------~~~   56 (226)
                      |.++|....|.     -+|.++.++|.+|.+..-+.-+   .+.++..    ++..     ..++.++         .++
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA   92 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhcc
Confidence            56789888887     4577888899998888655443   3333322    4432     2234333         356


Q ss_pred             CCeEEEecC----CHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHH
Q 027255           57 CTITIGMLA----DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAI  108 (226)
Q Consensus        57 advvi~~~p----~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~  108 (226)
                      +|+|++=++    .+....+-+   ..+.....+..+++..+..........++..
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el---~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f  145 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGEL---ARLKEVLGPDEVLLVLDAMTGQEALSVARAF  145 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHH---HHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH
T ss_pred             CcceeecccccchhhhhhHHHH---HHHHhhcCCceEEEEeccccchhHHHHHHHH
Confidence            899999554    333222222   3444555566555444443334444444443

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.36  E-value=0.36  Score=35.18  Aligned_cols=88  Identities=18%  Similarity=0.166  Sum_probs=52.2

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH----CCCc---ccCCHHHHh---hhCCeEEEecC----CH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HGAT---VGGSPAEVI---KKCTITIGMLA----DP   67 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----~g~~---~~~s~~~~~---~~advvi~~~p----~~   67 (226)
                      +|.=||||.=.  ++..|++.|++|++.|.+++.++.+++    .+..   ...+..++.   ...|+|++.-.    .+
T Consensus        40 ~ILDiGcG~G~--~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~  117 (226)
T d1ve3a1          40 KVLDLACGVGG--FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP  117 (226)
T ss_dssp             EEEEETCTTSH--HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCH
T ss_pred             EEEEECCCcch--hhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhCCh
Confidence            57788998733  556788899999999999988766543    2321   122222221   23577665431    12


Q ss_pred             HHHHHHhhcccccccccCCCcE-EEecC
Q 027255           68 AAALSVVFDKGGVLEQICPGKG-YIDMS   94 (226)
Q Consensus        68 ~~~~~v~~~~~~l~~~l~~g~i-vvd~s   94 (226)
                      ......+   ..+...|+||.. ++...
T Consensus       118 ~d~~~~l---~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         118 LELNQVF---KEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             HHHHHHH---HHHHHHEEEEEEEEEEEE
T ss_pred             hHHHHHH---HHHHHHcCcCcEEEEEEc
Confidence            2344455   566677777654 45443

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.14  E-value=0.3  Score=38.30  Aligned_cols=93  Identities=15%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             eEEEEecChhHHHHHHHHHhC----CC-------eEEEEcCCc----hh---HHHHHH----CCC-cccCCHHHHhh--h
Q 027255            2 EVGFLGLGIMGKAISMNLLRN----GF-------KVTVWNRTL----SK---CDELVA----HGA-TVGGSPAEVIK--K   56 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~----G~-------~V~~~dr~~----~~---~~~l~~----~g~-~~~~s~~~~~~--~   56 (226)
                      ||.|.|+|.-|..+|+.|...    |.       +++++|+.-    ++   .+..+.    ... ....++.++++  +
T Consensus        27 kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~k  106 (294)
T d1pj3a1          27 KILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILK  106 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHC
T ss_pred             EEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcC
Confidence            689999999999999987654    42       488888631    11   111111    111 12346777765  5


Q ss_pred             CCeEEEecC-CHHHHHHHhhcccccccccCCCcEEEecCCCCH
Q 027255           57 CTITIGMLA-DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH   98 (226)
Q Consensus        57 advvi~~~p-~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~   98 (226)
                      .+++|-+.. .....++++   +.+.. +.+.-+|.-+|+-.|
T Consensus       107 ptvliG~S~~~g~ft~evi---~~Ma~-~~~~PIIFaLSNPt~  145 (294)
T d1pj3a1         107 PSTIIGVAGAGRLFTPDVI---RAMAS-INERPVIFALSNPTA  145 (294)
T ss_dssp             CSEEEECCCSSCCSCHHHH---HHHHH-HCSSCEEEECCSSGG
T ss_pred             CceEEEecCCCCcCCHHHH---HHHHh-cCCCcEEEEccCCCC
Confidence            666665542 222234444   22222 335566666666443

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=83.90  E-value=1.5  Score=30.50  Aligned_cols=63  Identities=17%  Similarity=0.128  Sum_probs=44.3

Q ss_pred             eEEEEec---ChhHHHHHHHHHhCC-CeEEEEcCC-----chhHHHHHHCCC--cccCCHHHHhhhCCeEEEec
Q 027255            2 EVGFLGL---GIMGKAISMNLLRNG-FKVTVWNRT-----LSKCDELVAHGA--TVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus         2 ~IgvIG~---G~mG~~~A~~l~~~G-~~V~~~dr~-----~~~~~~l~~~g~--~~~~s~~~~~~~advvi~~~   64 (226)
                      ||+|||=   +++...+...+.+-| ..+++..+.     +...+.+...|.  ..+.++.++++++|+|.+..
T Consensus         6 ~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~   79 (160)
T d1ekxa2           6 HVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR   79 (160)
T ss_dssp             EEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECC
T ss_pred             EEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeec
Confidence            7999998   558888988888886 455665432     223344445554  45789999999999988654

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=0.56  Score=34.45  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEcC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR   31 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr   31 (226)
                      |||.|+|.+.+|....+.|.++||+|. ++.+
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~   32 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTH   32 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEEEcC
Confidence            999999999999999999999999975 4443

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=83.77  E-value=0.45  Score=31.00  Aligned_cols=31  Identities=10%  Similarity=-0.096  Sum_probs=25.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEEEEcC
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR   31 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr   31 (226)
                      ++|.|||.|+-|.-+|..|++.+-+|+...|
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            5799999999999999999987766544433

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=83.41  E-value=0.76  Score=33.61  Aligned_cols=30  Identities=23%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCCCeEE-EEc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWN   30 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~d   30 (226)
                      |||.|+|.+..+..+.+.|.++|+++. |+.
T Consensus         4 mKI~f~G~~~~~~~~L~~L~~~~~~i~~Vit   34 (206)
T d1fmta2           4 LRIIFAGTPDFAARHLDALLSSGHNVVGVFT   34 (206)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            899999999999999999999999865 443

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=83.34  E-value=0.63  Score=35.11  Aligned_cols=32  Identities=25%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             EEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (226)
Q Consensus         3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   34 (226)
                      +-|||.|..|...|..+++.|.+|.++++.+.
T Consensus        45 vvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~   76 (261)
T d1mo9a1          45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   76 (261)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccCc
Confidence            77999999999999999999999999987654

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=83.13  E-value=0.55  Score=35.57  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=23.6

Q ss_pred             EEEE-ecChhHHHHHHHHHhCCC-eEEEEc
Q 027255            3 VGFL-GLGIMGKAISMNLLRNGF-KVTVWN   30 (226)
Q Consensus         3 IgvI-G~G~mG~~~A~~l~~~G~-~V~~~d   30 (226)
                      |.|. |.|.+|+.+++.|+++|+ +|+++|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            4455 469999999999999995 799987

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=82.82  E-value=1.1  Score=31.66  Aligned_cols=55  Identities=5%  Similarity=-0.013  Sum_probs=40.5

Q ss_pred             hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEec
Q 027255           10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML   64 (226)
Q Consensus        10 ~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~   64 (226)
                      ++...++..+.+.|.++.++.+..=..+.-...++....++.++++++|+|.+-+
T Consensus        20 ~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~   74 (161)
T d1js1x2          20 AVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN   74 (161)
T ss_dssp             HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeeh
Confidence            3566788888889999999876432222222357788999999999999998643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.82  E-value=0.94  Score=31.56  Aligned_cols=31  Identities=29%  Similarity=0.245  Sum_probs=26.7

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCe-EEEEcCC
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRT   32 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~   32 (226)
                      ||.|||.|+.|.-.|..+.+.|.+ |+++.|.
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            799999999999999999999864 7777654

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.27  E-value=0.3  Score=33.74  Aligned_cols=98  Identities=9%  Similarity=-0.017  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCH-----HHHHHHhhccccccccc
Q 027255           10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP-----AAALSVVFDKGGVLEQI   84 (226)
Q Consensus        10 ~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~-----~~~~~v~~~~~~l~~~l   84 (226)
                      .|...|+..|.+.|++|.+++.+......+        ....+-+.++|.+++..|+.     ..+...+   ..+...-
T Consensus        19 ~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~--------~~~~~~l~~~d~iiigspt~~~~~~~~~~~~l---~~~~~~~   87 (148)
T d1vmea1          19 NVMKKAIDSLKEKGFTPVVYKFSDEERPAI--------SEILKDIPDSEALIFGVSTYEAEIHPLMRFTL---LEIIDKA   87 (148)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECSSCCCCH--------HHHHHHSTTCSEEEEEECEETTEECHHHHHHH---HHHHHHC
T ss_pred             HHHHHHHHHHHhCCCeEEEEecccccccch--------hHhhhhHHHCCEeEEEecccCCccCchHHHHH---HHHhhcc
Confidence            366777888888999998887543221000        01122356799999999842     2344444   2332322


Q ss_pred             CCCcEEEecCC--CCHHHHHHHHHHHHhcCCcEEec
Q 027255           85 CPGKGYIDMST--VDHETSIKISRAITSKGGHFLEA  118 (226)
Q Consensus        85 ~~g~ivvd~st--~~~~~~~~l~~~~~~~g~~~ld~  118 (226)
                      .+++.++-.+|  ......+.+.+.+.+.|..++..
T Consensus        88 ~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v~~  123 (148)
T d1vmea1          88 NYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSF  123 (148)
T ss_dssp             CCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEEE
T ss_pred             cCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEEee
Confidence            24554333333  22345677888888888877643

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.52  E-value=1.5  Score=30.41  Aligned_cols=67  Identities=13%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             CeEEEEecCh-----------------hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEe
Q 027255            1 MEVGFLGLGI-----------------MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM   63 (226)
Q Consensus         1 m~IgvIG~G~-----------------mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~   63 (226)
                      .||+||-.|.                 =+..++..|.+.|++|.-+..-++..+.+.+       .+.++++++|+||++
T Consensus         1 PrV~iistG~El~~~~~~~~~g~i~dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~-------~l~~~~~~~Dliitt   73 (155)
T d2ftsa3           1 PVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLN-------ALNEGISRADVIITS   73 (155)
T ss_dssp             CCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHH-------HHHHHHHHCSEEEEE
T ss_pred             CEEEEEeCChhccCCCCcCCCCcEeechHHHHHHHhcccccceEEEEEecCchhHHHH-------HHHHhhcccCEEEEe
Confidence            3677777763                 2456777788889988766554444444432       356677889999885


Q ss_pred             cC----CHHHHHHHh
Q 027255           64 LA----DPAAALSVV   74 (226)
Q Consensus        64 ~p----~~~~~~~v~   74 (226)
                      --    ..+.+++++
T Consensus        74 GG~s~g~~D~~~~~l   88 (155)
T d2ftsa3          74 GGVSMGEKDYLKQVL   88 (155)
T ss_dssp             SCCSSSCCHHHHHHH
T ss_pred             ccccCCcchhhHHHH
Confidence            32    224555555

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.49  E-value=1  Score=32.24  Aligned_cols=37  Identities=32%  Similarity=0.538  Sum_probs=29.8

Q ss_pred             eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (226)
Q Consensus         2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   40 (226)
                      +|.=|||| .|. .+..|++.|++|+.+|.++..++.+.
T Consensus        33 rvLDiGcG-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~   69 (198)
T d2i6ga1          33 RTLDLGCG-NGR-NSLYLAANGYDVTAWDKNPASMANLE   69 (198)
T ss_dssp             EEEEETCT-TSH-HHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             cEEEECCC-CCH-HHHHHHHHhhhhccccCcHHHHHHHH
Confidence            56778998 555 66688899999999999998777544

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=81.10  E-value=0.67  Score=33.02  Aligned_cols=30  Identities=20%  Similarity=0.465  Sum_probs=25.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhCC-CeEEEEc
Q 027255            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWN   30 (226)
Q Consensus         1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~d   30 (226)
                      |||||=|+|.+|+.+.+.+.+.. ++|...|
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaIN   32 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIN   32 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEe
Confidence            68999999999999999988764 6766665

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.86  E-value=0.52  Score=38.74  Aligned_cols=29  Identities=21%  Similarity=0.286  Sum_probs=23.2

Q ss_pred             CeEEEEe--------cChhH---HHHHHHHHhCCCeEEEE
Q 027255            1 MEVGFLG--------LGIMG---KAISMNLLRNGFKVTVW   29 (226)
Q Consensus         1 m~IgvIG--------~G~mG---~~~A~~l~~~G~~V~~~   29 (226)
                      |||.+|.        .|.+|   ..+++.|++.||+|++.
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi   40 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTL   40 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEE
Confidence            8999885        25544   66799999999999986