Citrus Sinensis ID: 027258

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
MKLQFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF
cccHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHccccccccEEEEEEEcHHHHcccccccccccccccccccEEEEEEEEcccccccEcccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHccHHHHHHHccccccccEEEHHHHHHHHHHHHccccEEEEEEcccccEEEEEEEEEEEcccccEcccccccccccccEEEcccc
MKLQFSIFTKLLIIQYLSILCVSQDFDFFyfvqqwpgsycdtkqsccypksgkpaadfgihglwpeykdgsypsncdpdsvfeksQISDLISDLrqnwptlscpsndgtkfwthewvkhgtcaeseLDQREYFEAALKLKEKANLLQALKnagikpddgfYELESIIAAIKEatgftpgiecnvdpehnsqLYQIYMCVdtsasefiqcpkqprkkcastvqfprf
MKLQFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSASefiqcpkqprkkcastvqfprf
MKLQFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFeaalklkekanllqalknaGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF
***QFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYP**C****VFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSASEFIQC*****************
****FSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPR*KCASTVQFPRF
MKLQFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSASEFIQCPK***************
**LQFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLQFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query226 2.2.26 [Sep-21-2011]
P42815222 Ribonuclease 3 OS=Arabido yes no 0.982 1.0 0.683 1e-91
P80022230 Extracellular ribonucleas N/A no 0.982 0.965 0.633 3e-81
P80196237 Intracellular ribonucleas N/A no 0.991 0.945 0.602 8e-79
P42813230 Ribonuclease 1 OS=Arabido no no 0.973 0.956 0.599 1e-78
Q7M438223 Ribonuclease DdI OS=Dicty yes no 0.938 0.950 0.376 9e-32
P23540191 Ribonuclease MC OS=Momord N/A no 0.800 0.947 0.363 2e-28
P42814259 Ribonuclease 2 OS=Arabido no no 0.876 0.764 0.365 5e-27
Q7M456213 Ribonuclease Oy OS=Crasso N/A no 0.814 0.863 0.372 4e-26
Q38716235 Ribonuclease S-2 OS=Antir N/A no 0.827 0.795 0.372 5e-25
P83618238 Ribonuclease-like storage N/A no 0.787 0.747 0.306 2e-23
>sp|P42815|RNS3_ARATH Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1 Back     alignment and function desciption
 Score =  336 bits (861), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 153/224 (68%), Positives = 181/224 (80%), Gaps = 2/224 (0%)

Query: 3   LQFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHG 62
           ++F IF  +L +Q L +   +QDFDFFYFV QWPG+YCD++ SCCYP++GKPAADFGIHG
Sbjct: 1   MKFFIF--ILALQQLYVQSFAQDFDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHG 58

Query: 63  LWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTC 122
           LWP YK G +P NC+PDS F+  ++SDL+SDL++ WPTLSCPSNDG KFWTHEW KHGTC
Sbjct: 59  LWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTC 118

Query: 123 AESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIEC 182
           AESELDQ +YFEA LKLK+KANLL AL NAGIKPDD FYE++ I   IK+  GF PGIEC
Sbjct: 119 AESELDQHDYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMKDIENTIKQVVGFAPGIEC 178

Query: 183 NVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF 226
           N D  HNSQLYQIY+CVDTSAS+FI CP  P  +C S VQFP+F
Sbjct: 179 NKDSSHNSQLYQIYLCVDTSASKFINCPVMPHGRCDSRVQFPKF 222
May remobilize phosphate, particularly when cells senesce or when phosphate becomes limiting.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 7EC: .EC: 1
>sp|P80022|RNLE_SOLLC Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2 Back     alignment and function description
>sp|P80196|RNLX_SOLLC Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2 Back     alignment and function description
>sp|P42813|RNS1_ARATH Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1 Back     alignment and function description
>sp|Q7M438|RNDI_DICDI Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3 Back     alignment and function description
>sp|P23540|RNMC_MOMCH Ribonuclease MC OS=Momordica charantia PE=1 SV=1 Back     alignment and function description
>sp|P42814|RNS2_ARATH Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1 Back     alignment and function description
>sp|Q7M456|RNOY_CRAGI Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1 Back     alignment and function description
>sp|Q38716|RNS2_ANTHI Ribonuclease S-2 OS=Antirrhinum hispanicum GN=S2 PE=2 SV=1 Back     alignment and function description
>sp|P83618|RN28_PANGI Ribonuclease-like storage protein OS=Panax ginseng PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query226
255562876226 ribonuclease t2, putative [Ricinus commu 1.0 1.0 0.765 1e-101
356498298226 PREDICTED: ribonuclease 3-like [Glycine 1.0 1.0 0.738 1e-100
351722053226 uncharacterized protein LOC100306447 pre 1.0 1.0 0.725 1e-100
388507378226 unknown [Lotus japonicus] 1.0 1.0 0.734 3e-99
357487015227 LCR-like protein [Medicago truncatula] g 1.0 0.995 0.731 4e-98
9957752227 S-like ribonuclease [Prunus dulcis] 0.973 0.969 0.736 1e-97
388490898238 unknown [Medicago truncatula] 1.0 0.949 0.726 3e-97
224098880227 predicted protein [Populus trichocarpa] 1.0 0.995 0.726 6e-97
449434782228 PREDICTED: ribonuclease 3-like [Cucumis 1.0 0.991 0.701 2e-95
1526417227 ribonuclease [Pyrus pyrifolia] 0.938 0.933 0.740 3e-94
>gi|255562876|ref|XP_002522443.1| ribonuclease t2, putative [Ricinus communis] gi|223538328|gb|EEF39935.1| ribonuclease t2, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/226 (76%), Positives = 196/226 (86%)

Query: 1   MKLQFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGI 60
           MK  FSI  KLL IQ LS++C+ QDFDFFYFVQQWPGSYCDT+ SCCYPK+GKPAADFGI
Sbjct: 1   MKQNFSILFKLLTIQCLSVVCLCQDFDFFYFVQQWPGSYCDTRHSCCYPKTGKPAADFGI 60

Query: 61  HGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHG 120
           HGLWP YKDG YPSNC+PDS ++KSQISDL S L+++WPTLSCPS DG KFW+HEW+KHG
Sbjct: 61  HGLWPNYKDGGYPSNCNPDSEYDKSQISDLTSSLQKDWPTLSCPSGDGNKFWSHEWIKHG 120

Query: 121 TCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGI 180
           TC+ESELDQ +YFEAALKLKEK NLLQALK+AGIKPDD FYEL SI  AIKEATG+TPGI
Sbjct: 121 TCSESELDQHDYFEAALKLKEKVNLLQALKDAGIKPDDEFYELSSIEEAIKEATGYTPGI 180

Query: 181 ECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF 226
           ECNVD   NSQL+Q+Y+CVDTS SE I+CP  PR +CAS VQFP+F
Sbjct: 181 ECNVDGSRNSQLFQVYLCVDTSGSEIIECPVLPRGRCASRVQFPKF 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356498298|ref|XP_003517990.1| PREDICTED: ribonuclease 3-like [Glycine max] Back     alignment and taxonomy information
>gi|351722053|ref|NP_001235183.1| uncharacterized protein LOC100306447 precursor [Glycine max] gi|255628569|gb|ACU14629.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388507378|gb|AFK41755.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357487015|ref|XP_003613795.1| LCR-like protein [Medicago truncatula] gi|355515130|gb|AES96753.1| LCR-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|9957752|gb|AAG09465.1|AF227522_1 S-like ribonuclease [Prunus dulcis] Back     alignment and taxonomy information
>gi|388490898|gb|AFK33515.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224098880|ref|XP_002311303.1| predicted protein [Populus trichocarpa] gi|222851123|gb|EEE88670.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449434782|ref|XP_004135175.1| PREDICTED: ribonuclease 3-like [Cucumis sativus] gi|449478403|ref|XP_004155309.1| PREDICTED: ribonuclease 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|1526417|dbj|BAA08475.1| ribonuclease [Pyrus pyrifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query226
TAIR|locus:2200665222 RNS3 "ribonuclease 3" [Arabido 0.982 1.0 0.616 9.7e-80
TAIR|locus:2035871228 AT1G14220 [Arabidopsis thalian 0.977 0.969 0.615 2.6e-79
TAIR|locus:2056755230 RNS1 "ribonuclease 1" [Arabido 0.955 0.939 0.568 3.3e-70
TAIR|locus:2035865247 AT1G14210 [Arabidopsis thalian 0.955 0.874 0.468 2.9e-55
UNIPROTKB|Q940D3252 Q940D3 "RNase S-like protein" 0.880 0.789 0.334 2e-33
DICTYBASE|DDB_G0281293223 ddiA "ribonuclease T2" [Dictyo 0.827 0.838 0.379 3.8e-30
TAIR|locus:2063964259 RNS2 "ribonuclease 2" [Arabido 0.876 0.764 0.342 1.5e-26
DICTYBASE|DDB_G0295845236 DDB_G0295845 "ribonuclease T2" 0.827 0.792 0.339 3.3e-24
UNIPROTKB|P83618238 P83618 "Ribonuclease-like stor 0.884 0.840 0.293 3e-21
UNIPROTKB|F1P285201 RNASET2 "Uncharacterized prote 0.809 0.910 0.326 3.9e-21
TAIR|locus:2200665 RNS3 "ribonuclease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 138/224 (61%), Positives = 165/224 (73%)

Query:     3 LQFSIFTKLLIIQYLSILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHG 62
             ++F IF  +L +Q L +   +QDFDFFYFV QWPG+YCD++ SCCYP++GKPAADFGIHG
Sbjct:     1 MKFFIF--ILALQQLYVQSFAQDFDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHG 58

Query:    63 LWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTC 122
             LWP YK G +P NC+PDS F+  ++SDL+SDL++ WPTLSCPSNDG KFWTHEW KHGTC
Sbjct:    59 LWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTC 118

Query:   123 AESELDQREYFXXXXXXXXXXXXXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIEC 182
             AESELDQ +YF                   GIKPDD FYE++ I   IK+  GF PGIEC
Sbjct:   119 AESELDQHDYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMKDIENTIKQVVGFAPGIEC 178

Query:   183 NVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF 226
             N D  HNSQLYQIY+CVDTSAS+FI CP  P  +C S VQFP+F
Sbjct:   179 NKDSSHNSQLYQIYLCVDTSASKFINCPVMPHGRCDSRVQFPKF 222
GO:0003723 "RNA binding" evidence=IEA
GO:0004521 "endoribonuclease activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0033897 "ribonuclease T2 activity" evidence=IEA
GO:0007568 "aging" evidence=IEP
TAIR|locus:2035871 AT1G14220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056755 RNS1 "ribonuclease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035865 AT1G14210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q940D3 Q940D3 "RNase S-like protein" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281293 ddiA "ribonuclease T2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2063964 RNS2 "ribonuclease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0295845 DDB_G0295845 "ribonuclease T2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P83618 P83618 "Ribonuclease-like storage protein" [Panax ginseng (taxid:4054)] Back     alignment and assigned GO terms
UNIPROTKB|F1P285 RNASET2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42815RNS3_ARATH3, ., 1, ., 2, 7, ., 10.68300.98231.0yesno
Q7M438RNDI_DICDI3, ., 1, ., 2, 7, ., 10.37600.93800.9506yesno
P80196RNLX_SOLLC3, ., 1, ., 2, 7, ., 10.60260.99110.9451N/Ano
P80022RNLE_SOLLC3, ., 1, ., 2, 7, ., 10.63390.98230.9652N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.27.10.991
3rd Layer3.1.270.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VIII0345
hypothetical protein (227 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
cd01061195 cd01061, RNase_T2_euk, Ribonuclease T2 (RNase T2) 3e-79
cd00374195 cd00374, RNase_T2, Ribonuclease T2 (RNase T2) is a 8e-73
pfam00445182 pfam00445, Ribonuclease_T2, Ribonuclease T2 family 2e-70
cd01062184 cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) 5e-18
COG3719249 COG3719, Rna, Ribonuclease I [Translation, ribosom 2e-10
>gnl|CDD|238512 cd01061, RNase_T2_euk, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information 
 Score =  235 bits (602), Expect = 3e-79
 Identities = 90/196 (45%), Positives = 117/196 (59%), Gaps = 6/196 (3%)

Query: 26  FDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKS 85
           FD+   V QWP +YC T   CC P    P   F IHGLWP+   G+YP  CD  S F+  
Sbjct: 1   FDYLQLVLQWPDTYCSTGPCCCRPP---PPDSFTIHGLWPDNCSGTYPQFCDSSSNFDSI 57

Query: 86  QISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESEL-DQREYFEAALKLKEKAN 144
            ISDL+++L + WP L+ P N+   FW HEW KHGTC+ + L +Q +YF+ ALKLK+K +
Sbjct: 58  LISDLLNELNKYWPDLTGPKNN-QSFWEHEWNKHGTCSSTLLYNQYDYFDTALKLKDKLD 116

Query: 145 LLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSAS 204
           LL+ L  AGI P    Y L  I  AIK ATG TP I+C+ DP    +L +I++C D    
Sbjct: 117 LLKILAKAGIVPSTQTYTLSDIQNAIKAATGVTPVIKCSKDPGK-GELNEIWICFDKKGG 175

Query: 205 EFIQCPKQPRKKCAST 220
           EFI CP+ P+  C   
Sbjct: 176 EFIDCPRPPKSTCPDD 191

This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members. Length = 195
>gnl|CDD|238220 cd00374, RNase_T2, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>gnl|CDD|215923 pfam00445, Ribonuclease_T2, Ribonuclease T2 family Back     alignment and domain information
>gnl|CDD|238513 cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>gnl|CDD|226242 COG3719, Rna, Ribonuclease I [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 226
KOG1642263 consensus Ribonuclease, T2 family [RNA processing 100.0
cd01061195 RNase_T2_euk Ribonuclease T2 (RNase T2) is a wides 100.0
cd00374195 RNase_T2 Ribonuclease T2 (RNase T2) is a widesprea 100.0
PF00445189 Ribonuclease_T2: Ribonuclease T2 family; InterPro: 100.0
cd01062184 RNase_T2_prok Ribonuclease T2 (RNase T2) is a wide 100.0
PRK10095268 ribonuclease I; Provisional 100.0
COG3719249 Rna Ribonuclease I [Translation, ribosomal structu 100.0
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-61  Score=401.00  Aligned_cols=202  Identities=59%  Similarity=1.154  Sum_probs=183.3

Q ss_pred             CCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCCcc
Q 027258           23 SQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLS  102 (226)
Q Consensus        23 ~~~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~~~  102 (226)
                      ..+||||+|+++||.++|...+.||.+..|.+. .||||||||++.+|+||++|+.+.+||.++|++|++.|+++||++.
T Consensus        29 ~~~fd~f~fvqqWP~~~Cd~~~~~C~~~~G~~a-~ftIHGLWP~~~~G~~P~~Cn~s~~Fd~~~isdl~~~L~~~Wp~L~  107 (263)
T KOG1642|consen   29 EEDFDFFYFVQQWPGAYCDSQRTCCYPPSGKPA-DFTIHGLWPDYNHGSWPQNCNRSSQFDDSKISDLEDSLEKEWPDLY  107 (263)
T ss_pred             cCCCCEEEEEEecCCccccCCccccCCCCCCcc-ceEEeeeccCCCCCCCcccCCCcccCChHHccchhhhHHhhccccc
Confidence            378999999999999999998889988776554 9999999999999999999998889999999999999999999999


Q ss_pred             CCCCCC--ccccccccceeeeccCCcC---ChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCC
Q 027258          103 CPSNDG--TKFWTHEWVKHGTCAESEL---DQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFT  177 (226)
Q Consensus       103 ~~~~~~--~~fw~hEW~KHGtCs~~~~---~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~  177 (226)
                      +++.++  ++||+|||+|||||+.+++   +|.+||.++++|++++|+..+|.++||.|+++.|++++|++||++++|..
T Consensus       108 ~~s~n~g~~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~~  187 (263)
T KOG1642|consen  108 CPSPNGGHESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGKT  187 (263)
T ss_pred             cCCCCCccchhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCCC
Confidence            887433  8999999999999999887   99999999999999999999999999999889999999999999999999


Q ss_pred             ceEEeeeCCCCC-ccEEEEEEEEeCCCCceecCCC----CCCCCCCCCeeecCC
Q 027258          178 PGIECNVDPEHN-SQLYQIYMCVDTSASEFIQCPK----QPRKKCASTVQFPRF  226 (226)
Q Consensus       178 p~l~C~~~~~~~-~~L~Ei~iC~d~~~~~~~~Cp~----~~~~~C~~~i~~p~f  226 (226)
                      |.+.|.++.+++ .+|.|||+||.|+. ..++|..    .+.++|+..+.||.|
T Consensus       188 p~I~C~rd~~~nv~~l~qI~lCl~kd~-~~~d~~~~~~~~P~g~~~~~~~~ps~  240 (263)
T KOG1642|consen  188 PGIECLRDSKHNVSQLGQIRLCLLKDF-SPRDCIECPTEFPRGSCPTFIQFPSF  240 (263)
T ss_pred             CceEeccCcccCceEeeeEEEEeecCc-ccccccCCCCcccCCcccccccCCCC
Confidence            999999988777 78999999998773 4555543    345789999999875

>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3 Back     alignment and domain information
>cd01062 RNase_T2_prok Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>PRK10095 ribonuclease I; Provisional Back     alignment and domain information
>COG3719 Rna Ribonuclease I [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
1iyb_A208 Crystal Structure Of The Nicotiana Glutinosa Ribonu 2e-76
1dix_A208 Crystal Structure Of Rnase Le Length = 208 5e-71
1vcz_A217 Crystal Structure Of The Rnase Nt In Complex With 5 6e-63
1j1f_A191 Crystal Structure Of The Rnase Mc1 Mutant N71t In C 3e-25
1bk7_A190 Ribonuclease Mc1 From The Seeds Of Bitter Gourd Len 5e-25
1ucg_A190 Crystal Structure Of Ribonuclease Mc1 N71t Mutant L 6e-25
1j1g_A190 Crystal Structure Of The Rnase Mc1 Mutant N71s In C 4e-24
1v9h_A197 Crystal Structure Of The Rnase Mc1 Mutant Y101a In 7e-24
1jy5_A212 Rnase-Related Protein From Calystegia Sepium Length 1e-20
3t0o_A238 Crystal Structure Analysis Of Human Rnase T2 Length 1e-17
1sgl_A209 The Three-Dimensional Structure And X-Ray Sequence 8e-16
1iqq_A200 Crystal Structure Of Japanese Pear S3-Rnase Length 1e-13
1ioo_A196 Crystal Structure Of Nicotiana Alata Gemetophytic S 2e-13
3d3z_A247 Crystal Structure Of Actibind A T2 Rnase Length = 2 5e-10
3tbj_A237 The 1.7a Crystal Structure Of Actibind A T2 Ribonuc 6e-10
1bol_A222 The Crystal Structure Of Ribonuclease Rh From Rhizo 4e-09
>pdb|1IYB|A Chain A, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease Nw Length = 208 Back     alignment and structure 
Iteration: 1

 Score =  281 bits (720), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 129/204 (63%), Positives = 150/204 (73%)
Query: 23  SQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVF 82
           +QDFDFFYFVQQWPGSYCDTKQSCCYPK+GKPA+DFGIHGLWP   DGSYPSNCD +S +
Sbjct: 5   AQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPY 64
Query: 83  EKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFXXXXXXXXX 142
           ++SQ+SDLIS ++QNWPTL+CPS  G+ FW+HEW KHGTCAE+  DQ  YF         
Sbjct: 65  DQSQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQ 124
Query: 143 XXXXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTS 202
                     GI PD GFY L SI  AI+ A G+ PGIECNVD   NSQLYQIY+CVD S
Sbjct: 125 INLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICVDGS 184
Query: 203 ASEFIQCPKQPRKKCASTVQFPRF 226
            S  I+CP  PR KC S+++FP F
Sbjct: 185 GSNLIECPIFPRGKCGSSIEFPTF 208
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le Length = 208 Back     alignment and structure
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp Length = 217 Back     alignment and structure
>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex With 5'-Gmp Length = 191 Back     alignment and structure
>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd Length = 190 Back     alignment and structure
>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant Length = 190 Back     alignment and structure
>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex With 5'-Gmp Length = 190 Back     alignment and structure
>pdb|1V9H|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex With 5'-Ump Length = 197 Back     alignment and structure
>pdb|1JY5|A Chain A, Rnase-Related Protein From Calystegia Sepium Length = 212 Back     alignment and structure
>pdb|3T0O|A Chain A, Crystal Structure Analysis Of Human Rnase T2 Length = 238 Back     alignment and structure
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal That Trichomaglin Is A Novel S-Like Ribonuclease Length = 209 Back     alignment and structure
>pdb|1IQQ|A Chain A, Crystal Structure Of Japanese Pear S3-Rnase Length = 200 Back     alignment and structure
>pdb|1IOO|A Chain A, Crystal Structure Of Nicotiana Alata Gemetophytic Self-incompatibility Associated Sf11-rnase Length = 196 Back     alignment and structure
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase Length = 247 Back     alignment and structure
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases As Antitumorigenic Agents Length = 237 Back     alignment and structure
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus Niveus At 2.0 A Resolution Length = 222 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
1iyb_A208 Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP 3e-87
1vcz_A217 RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.8 1e-77
1ucd_A190 Ribonuclease MC; alpha plus beta, hydrolase; HET: 3e-65
1sgl_A209 Trichomaglin; S-like ribonuclease, X-RAY sequence, 3e-60
1jy5_A212 CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2 2e-59
1ioo_A196 SF11-RNAse; SELF-incompatibility ribonuclease, hyd 1e-58
3t0o_A238 Ribonuclease T2, ribonuclease 6; rnaset2, alpha/be 1e-56
1iqq_A200 S3-RNAse; japanese PEAR, SELF-incompatibilit famil 4e-55
3d3z_A247 Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {A 9e-44
1bol_A222 Protein (ribonuclease RH); ribonucleases, hydrolas 4e-42
2pqx_A245 Ribonuclease I; hydrolase; HET: MES; 1.42A {Escher 3e-40
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A Length = 208 Back     alignment and structure
 Score =  255 bits (653), Expect = 3e-87
 Identities = 138/207 (66%), Positives = 164/207 (79%)

Query: 20  LCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPD 79
           +  +QDFDFFYFVQQWPGSYCDTKQSCCYPK+GKPA+DFGIHGLWP   DGSYPSNCD +
Sbjct: 2   VEFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSN 61

Query: 80  SVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKL 139
           S +++SQ+SDLIS ++QNWPTL+CPS  G+ FW+HEW KHGTCAE+  DQ  YF+ AL L
Sbjct: 62  SPYDQSQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDL 121

Query: 140 KEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCV 199
           K + NLL+ L+ AGI PD GFY L SI  AI+ A G+ PGIECNVD   NSQLYQIY+CV
Sbjct: 122 KNQINLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICV 181

Query: 200 DTSASEFIQCPKQPRKKCASTVQFPRF 226
           D S S  I+CP  PR KC S+++FP F
Sbjct: 182 DGSGSNLIECPIFPRGKCGSSIEFPTF 208
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A* Length = 217 Back     alignment and structure
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A* Length = 190 Back     alignment and structure
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1 Length = 209 Back     alignment and structure
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1 Length = 212 Back     alignment and structure
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1 Length = 196 Back     alignment and structure
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens} Length = 238 Back     alignment and structure
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1 Length = 200 Back     alignment and structure
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger} Length = 247 Back     alignment and structure
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1 Length = 222 Back     alignment and structure
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A* Length = 245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query226
1iyb_A208 Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP 100.0
1vcz_A217 RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.8 100.0
1sgl_A209 Trichomaglin; S-like ribonuclease, X-RAY sequence, 100.0
1jy5_A212 CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2 100.0
1ucd_A190 Ribonuclease MC; alpha plus beta, hydrolase; HET: 100.0
1ioo_A196 SF11-RNAse; SELF-incompatibility ribonuclease, hyd 100.0
1iqq_A200 S3-RNAse; japanese PEAR, SELF-incompatibilit famil 100.0
3t0o_A238 Ribonuclease T2, ribonuclease 6; rnaset2, alpha/be 100.0
1bol_A222 Protein (ribonuclease RH); ribonucleases, hydrolas 100.0
2pqx_A245 Ribonuclease I; hydrolase; HET: MES; 1.42A {Escher 100.0
3d3z_A247 Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {A 100.0
4dvk_A165 E(RNS) glycoprotein; T2 ribonuclease, virus envelo 99.9
2ciw_A 299 Chloroperoxidase; oxidoreductase, heme, iron, chlo 84.89
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A Back     alignment and structure
Probab=100.00  E-value=9.6e-67  Score=434.36  Aligned_cols=206  Identities=67%  Similarity=1.300  Sum_probs=188.1

Q ss_pred             ccCCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCC
Q 027258           21 CVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPT  100 (226)
Q Consensus        21 ~~~~~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~  100 (226)
                      .++++||||+|||+|||+||+.++.||.|..+.+..+||||||||++.+|++|++|+.+..|+..++.+++++|+++||+
T Consensus         3 ~~~~~fD~~~l~l~Wpp~~C~~~~~cc~p~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~   82 (208)
T 1iyb_A            3 EFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPYDQSQVSDLISRMQQNWPT   82 (208)
T ss_dssp             CCCCSCSEEEEEEECHHHHSSSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCBSCCTTSCCCGGGGGGGHHHHHHHSCC
T ss_pred             ccCCCceEEEEEEeCChHHhcCCCCCCCCCCCCCCCCCEEccccCCCCCCCCCCCCCCCCCCCchhcchhhhHhhccCCC
Confidence            46799999999999999999987778987544467899999999998888999999876779988898999999999999


Q ss_pred             ccCCCCCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCCceE
Q 027258          101 LSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGI  180 (226)
Q Consensus       101 ~~~~~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p~l  180 (226)
                      +.+++.++..||+|||+|||||+..+.+|.+||++|++|++++|+.++|+++||+|++++|++++|++||++++|..|.|
T Consensus        83 l~~~~~~~~~fW~hEw~KHGTC~~~~~~q~~YF~~a~~l~~~~~~~~~L~~~gI~P~~~~~t~~~I~~Ai~~~~g~~p~l  162 (208)
T 1iyb_A           83 LACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGI  162 (208)
T ss_dssp             CCSSCCCSHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCSSSCEEEHHHHHHHHHHHHSSCCEE
T ss_pred             cccCCCCcchHHHhhccCCeeeCccccCHHHHHHHHHHHHHHcChHHHHHHCCcccCCceEeHHHHHHHHHHHhCCCeEE
Confidence            97666677899999999999999966699999999999999999999999999999778899999999999999999999


Q ss_pred             EeeeCCCCCccEEEEEEEEeCCCCceecCCCCCCCCCCCCeeecCC
Q 027258          181 ECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF  226 (226)
Q Consensus       181 ~C~~~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C~~~i~~p~f  226 (226)
                      +|.++++++.+|.||+||||+++.++|+||....++|++.|.||+|
T Consensus       163 ~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~C~~~i~~p~f  208 (208)
T 1iyb_A          163 ECNVDESGNSQLYQIYICVDGSGSNLIECPIFPRGKCGSSIEFPTF  208 (208)
T ss_dssp             EEEECTTCCEEEEEEEEEEETTSSSBCCCSCCCCCCCCSEEECCCC
T ss_pred             EEeeCCCCCeEEEEEEEEecCCCCeeecCCCCCCCCCCCCcCcCCC
Confidence            9998877778999999999999878999997656789999999998
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A* Back     alignment and structure
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1 Back     alignment and structure
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1 Back     alignment and structure
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A* Back     alignment and structure
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1 Back     alignment and structure
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1 Back     alignment and structure
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens} Back     alignment and structure
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1 Back     alignment and structure
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A* Back     alignment and structure
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger} Back     alignment and structure
>4dvk_A E(RNS) glycoprotein; T2 ribonuclease, virus envelope glycoprotein, viral protein; HET: NAG BMA MAN; 2.21A {Bovine viral diarrhea virus} PDB: 4dw5_A* 4dvl_A* 4dvn_A* 4dw3_A* 4dw4_A* 4dwc_A* 4dwa_A* 4dw7_A* Back     alignment and structure
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 226
d1iyba_208 d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxI 9e-78
d1ucda_190 d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Mom 1e-61
d1iooa_196 d.124.1.1 (A:) Gemetophytic self-incompatibility a 5e-58
d1iqqa_200 d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyri 6e-56
d1sgla_206 d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes 1e-55
d1jy5a_207 d.124.1.1 (A:) RNase-related protein {Hedge bindwe 1e-54
d1bola_222 d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [T 2e-40
>d1iyba_ d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxId: 35889]} Length = 208 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribonuclease Rh-like
superfamily: Ribonuclease Rh-like
family: Ribonuclease Rh-like
domain: RNase NW
species: Nicotiana glutinosa [TaxId: 35889]

 Score =  230 bits (588), Expect = 9e-78
 Identities = 138/206 (66%), Positives = 163/206 (79%)

Query: 21  CVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDS 80
             +QDFDFFYFVQQWPGSYCDTKQSCCYPK+GKPA+DFGIHGLWP   DGSYPSNCD +S
Sbjct: 3   EFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNS 62

Query: 81  VFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLK 140
            +++SQ+SDLIS ++QNWPTL+CPS  G+ FW+HEW KHGTCAE+  DQ  YF+ AL LK
Sbjct: 63  PYDQSQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLK 122

Query: 141 EKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVD 200
            + NLL+ L+ AGI PD GFY L SI  AI+ A G+ PGIECNVD   NSQLYQIY+CVD
Sbjct: 123 NQINLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICVD 182

Query: 201 TSASEFIQCPKQPRKKCASTVQFPRF 226
            S S  I+CP  PR KC S+++FP F
Sbjct: 183 GSGSNLIECPIFPRGKCGSSIEFPTF 208
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica charantia) [TaxId: 3673]} Length = 190 Back     information, alignment and structure
>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId: 4087]} Length = 196 Back     information, alignment and structure
>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 3767]} Length = 200 Back     information, alignment and structure
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes lepiniana) [TaxId: 282652]} Length = 206 Back     information, alignment and structure
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Length = 207 Back     information, alignment and structure
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query226
d1iyba_208 RNase NW {Nicotiana glutinosa [TaxId: 35889]} 100.0
d1ucda_190 Ribonuclease MC1 {Bitter gourd (Momordica charanti 100.0
d1sgla_206 Trichomaglin {Gourd (Trichosanthes lepiniana) [Tax 100.0
d1iooa_196 Gemetophytic self-incompatibility associated SF11- 100.0
d1jy5a_207 RNase-related protein {Hedge bindweed (Calystegia 100.0
d1iqqa_200 S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 100.0
d1bola_222 Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]} 100.0
d2ciwa1120 Cloroperoxidase {Fungus (Caldariomyces fumago) [Ta 92.33
>d1iyba_ d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxId: 35889]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribonuclease Rh-like
superfamily: Ribonuclease Rh-like
family: Ribonuclease Rh-like
domain: RNase NW
species: Nicotiana glutinosa [TaxId: 35889]

Probab=100.00  E-value=5.4e-66  Score=427.88  Aligned_cols=206  Identities=67%  Similarity=1.300  Sum_probs=189.8

Q ss_pred             ccCCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCC
Q 027258           21 CVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPT  100 (226)
Q Consensus        21 ~~~~~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~  100 (226)
                      ..+++||||+||++|||+||+.++.||.+..+.+..+||||||||++.+|++|++|+.+..|+...+.+++++|+.+||+
T Consensus         3 ~~~~~fDy~~l~~~Wpp~~C~~~~~~~~~~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~l~~~Wp~   82 (208)
T d1iyba_           3 EFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPYDQSQVSDLISRMQQNWPT   82 (208)
T ss_dssp             CCCCSCSEEEEEEECHHHHSSSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCBSCCTTSCCCGGGGGGGHHHHHHHSCC
T ss_pred             cccCCCCeEEEEEECCHHHhCCCCCCCCCCCCCCCCCeEEeCCCCCCCCCCCccccCCCcCccccccHHHHHHHHHHHHH
Confidence            35789999999999999999887767765544567899999999999999999999887889999999999999999999


Q ss_pred             ccCCCCCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCCceE
Q 027258          101 LSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGI  180 (226)
Q Consensus       101 ~~~~~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p~l  180 (226)
                      +..+.+++.+||+|||+|||||+++++++.+||++|++|++++|+.++|+++||+|++++|++++|++||++++|.+|.|
T Consensus        83 l~~~~~~~~~~w~hEW~KHGtC~~~~~~~~~YF~~al~L~~~~n~~~~L~~~~i~p~~~~y~~~~i~~al~~~~g~~~~l  162 (208)
T d1iyba_          83 LACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGI  162 (208)
T ss_dssp             CCSSCCCSHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCSSSCEEEHHHHHHHHHHHHSSCCEE
T ss_pred             hhcccCccHHHHHHhcccceeccCccCCHHHHHHHHHHHHHHcccHHHHHhcccCCCCceeeHHHHHHHHHHhhCCCccE
Confidence            97766677889999999999999888899999999999999999999999999999878899999999999999999999


Q ss_pred             EeeeCCCCCccEEEEEEEEeCCCCceecCCCCCCCCCCCCeeecCC
Q 027258          181 ECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF  226 (226)
Q Consensus       181 ~C~~~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C~~~i~~p~f  226 (226)
                      +|.++.+++.+|.||+||||+++.++|+||...+++|+++|+||+|
T Consensus       163 ~C~~~~~~~~~L~Ei~iC~~~~~~~~~~Cp~~~~~~C~~~i~~P~f  208 (208)
T d1iyba_         163 ECNVDESGNSQLYQIYICVDGSGSNLIECPIFPRGKCGSSIEFPTF  208 (208)
T ss_dssp             EEEECTTCCEEEEEEEEEEETTSSSBCCCSCCCCCCCCSEEECCCC
T ss_pred             EEEEcCCCCEEEEEEEEEEeCCcCceeECCCCCCCCCCCceEcCCC
Confidence            9999888888999999999999778999998877899999999998
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica charantia) [TaxId: 3673]} Back     information, alignment and structure
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes lepiniana) [TaxId: 282652]} Back     information, alignment and structure
>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId: 4087]} Back     information, alignment and structure
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Back     information, alignment and structure
>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 3767]} Back     information, alignment and structure
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]} Back     information, alignment and structure
>d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]} Back     information, alignment and structure