Citrus Sinensis ID: 027287

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
MEMEMEMEMEMEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLSWENEQFGLNPKCDISR
cccHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEcccHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHcccccccccccccccccccccccccccccc
ccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHcccEEEEEEcHHHcHHHHccccccEEEEEccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHcccccHHHHcEEEEcccHHHHHHHHHHcccccccccccccHHHHHHcccccccHcc
MEMEMEMEMEMEMNNQskfnricvfcgssagkkstYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVydggrhvigvipktlmpreitgetvgevkpvADMHQRKAEMAKHSDafialpggygtLEELLEVITWAQlgihdkpvgllnvDGYYNSLLTFIDKAVeegfispnarhiivsapNAKELMNKMEEYFPQHERVASKLsweneqfglnpkcdisr
MEMEMEMEMEMEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVipktlmpreitgetvgevkPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKlsweneqfglnpkcdisr
mememememememNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLSWENEQFGLNPKCDISR
******************************************LGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEV****************SDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAP****************************************
*********************ICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLSWENEQFG*********
************MNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLSWENEQFGLNPKCDISR
*****************KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLSWENEQFGLN*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEMEMEMEMEMEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLSWENEQFGLNPKCDISR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query225 2.2.26 [Sep-21-2011]
Q8RUN2213 Cytokinin riboside 5'-mon yes no 0.946 1.0 0.859 1e-107
Q8L8B8215 Cytokinin riboside 5'-mon no no 0.942 0.986 0.820 1e-101
Q9LFH3215 Cytokinin riboside 5'-mon no no 0.928 0.972 0.818 2e-99
B9F166244 Probable cytokinin ribosi yes no 0.977 0.901 0.786 3e-99
Q0JBP5250 Probable cytokinin ribosi yes no 0.924 0.832 0.807 2e-98
Q8H7U8211 Probable cytokinin ribosi no no 0.897 0.957 0.806 2e-95
Q7XDB8204 Probable cytokinin ribosi no no 0.897 0.990 0.821 2e-95
Q8GW29217 Cytokinin riboside 5'-mon no no 0.875 0.907 0.802 3e-92
Q9LYV8201 Probable cytokinin ribosi no no 0.875 0.980 0.786 3e-88
Q5BPS0213 Cytokinin riboside 5'-mon no no 0.88 0.929 0.727 2e-86
>sp|Q8RUN2|LOG1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/213 (85%), Positives = 199/213 (93%)

Query: 13  MNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVY 72
           M  +SKF RICVFCGSSAG K +YKDAAIELG ELV+RNIDLVYGGGS+GLMGLISQAV+
Sbjct: 1   MEIESKFKRICVFCGSSAGNKVSYKDAAIELGTELVSRNIDLVYGGGSIGLMGLISQAVF 60

Query: 73  DGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEEL 132
           +GGRHVIGVIPKTLMPREITGETVGEVK VADMHQRKAEMAKHSDAFIALPGGYGTLEEL
Sbjct: 61  NGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEEL 120

Query: 133 LEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMN 192
           LEVITWAQLGIHDKPVGLLNV+GYYNSLL+FIDKAVEEGFISP ARHIIVSAP+AKEL+ 
Sbjct: 121 LEVITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFISPTARHIIVSAPSAKELVK 180

Query: 193 KMEEYFPQHERVASKLSWENEQFGLNPKCDISR 225
           K+E+Y P+HE+VASK SWE EQ GL+P C+ISR
Sbjct: 181 KLEDYVPRHEKVASKKSWEMEQIGLSPTCEISR 213
Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1
>sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFH3|LOG4_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 SV=1 Back     alignment and function description
>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1 Back     alignment and function description
>sp|Q0JBP5|LOGL6_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica GN=LOGL6 PE=2 SV=1 Back     alignment and function description
>sp|Q8H7U8|LOGL3_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica GN=LOGL3 PE=2 SV=1 Back     alignment and function description
>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2 SV=1 Back     alignment and function description
>sp|Q8GW29|LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2 Back     alignment and function description
>sp|Q9LYV8|LOG6_ARATH Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG6 OS=Arabidopsis thaliana GN=LOG6 PE=3 SV=2 Back     alignment and function description
>sp|Q5BPS0|LOG2_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
225435345218 PREDICTED: cytokinin riboside 5'-monopho 0.968 1.0 0.872 1e-109
297746273212 unnamed protein product [Vitis vinifera] 0.937 0.995 0.886 1e-109
356539382220 PREDICTED: cytokinin riboside 5'-monopho 0.96 0.981 0.861 1e-108
224106778212 predicted protein [Populus trichocarpa] 0.937 0.995 0.876 1e-107
449456020218 PREDICTED: cytokinin riboside 5'-monopho 0.955 0.986 0.862 1e-106
224132508212 predicted protein [Populus trichocarpa] 0.937 0.995 0.872 1e-106
255578127218 carboxy-lyase, putative [Ricinus communi 0.968 1.0 0.850 1e-106
356542627233 PREDICTED: cytokinin riboside 5'-monopho 0.942 0.909 0.867 1e-105
18401696213 cytokinin riboside 5'-monophosphate phos 0.946 1.0 0.859 1e-105
388491642218 unknown [Lotus japonicus] 0.968 1.0 0.849 1e-105
>gi|225435345|ref|XP_002285246.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/219 (87%), Positives = 205/219 (93%), Gaps = 1/219 (0%)

Query: 7   MEMEMEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGL 66
           ME + EM  QSKF RICVFCGSS GKKS+YKDAAIELG+ELV+RNIDLVYGGGS+GLMGL
Sbjct: 1   MERDKEMK-QSKFKRICVFCGSSQGKKSSYKDAAIELGRELVSRNIDLVYGGGSIGLMGL 59

Query: 67  ISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGY 126
           ISQAVYDGGRHVIGVIPKTLMPREITGETVGEVK VADMHQRKAEMA+HSDAFIALPGGY
Sbjct: 60  ISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARHSDAFIALPGGY 119

Query: 127 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPN 186
           GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL+FIDKAVEE FISP+ARHIIVSAP 
Sbjct: 120 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEDFISPSARHIIVSAPT 179

Query: 187 AKELMNKMEEYFPQHERVASKLSWENEQFGLNPKCDISR 225
           A+ELM K+EEYFP+HE VASKLSWE EQ G +PKC++SR
Sbjct: 180 ARELMKKLEEYFPRHEGVASKLSWETEQLGYSPKCELSR 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297746273|emb|CBI16329.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356539382|ref|XP_003538177.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224106778|ref|XP_002314282.1| predicted protein [Populus trichocarpa] gi|222850690|gb|EEE88237.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456020|ref|XP_004145748.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224132508|ref|XP_002328304.1| predicted protein [Populus trichocarpa] gi|222837819|gb|EEE76184.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255578127|ref|XP_002529933.1| carboxy-lyase, putative [Ricinus communis] gi|223530563|gb|EEF32441.1| carboxy-lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356542627|ref|XP_003539768.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Glycine max] Back     alignment and taxonomy information
>gi|18401696|ref|NP_565668.1| cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 [Arabidopsis thaliana] gi|75158446|sp|Q8RUN2.1|LOG1_ARATH RecName: Full=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1; AltName: Full=Protein LONELY GUY 1 gi|20197602|gb|AAM15149.1| expressed protein [Arabidopsis thaliana] gi|20197733|gb|AAM15229.1| expressed protein [Arabidopsis thaliana] gi|21592387|gb|AAM64338.1| unknown [Arabidopsis thaliana] gi|330253008|gb|AEC08102.1| cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388491642|gb|AFK33887.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
TAIR|locus:2828223213 LOG1 "AT2G28305" [Arabidopsis 0.933 0.985 0.866 2.9e-96
TAIR|locus:2084051215 LOG4 "AT3G53450" [Arabidopsis 0.884 0.925 0.844 7.5e-89
TAIR|locus:2164280217 LOG7 "AT5G06300" [Arabidopsis 0.871 0.903 0.806 1.5e-83
TAIR|locus:2143473201 LOG6 "AT5G03270" [Arabidopsis 0.826 0.925 0.817 4.2e-79
TAIR|locus:2039175213 LOG2 "AT2G35990" [Arabidopsis 0.875 0.924 0.730 1.6e-77
TAIR|locus:2132821228 LOG5 "AT4G35190" [Arabidopsis 0.884 0.872 0.713 2.4e-76
TAIR|locus:2143029216 LOG8 "LONELY GUY 8" [Arabidops 0.915 0.953 0.694 3.5e-75
UNIPROTKB|Q5ZC82242 LOG "Cytokinin riboside 5'-mon 0.866 0.805 0.712 1.5e-74
TIGR_CMR|GSU_2766196 GSU_2766 "decarboxylase family 0.853 0.979 0.523 2.6e-47
TIGR_CMR|BA_5294192 BA_5294 "decarboxylase family 0.786 0.921 0.480 1.9e-42
TAIR|locus:2828223 LOG1 "AT2G28305" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 182/210 (86%), Positives = 198/210 (94%)

Query:    16 QSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGG 75
             +SKF RICVFCGSSAG K +YKDAAIELG ELV+RNIDLVYGGGS+GLMGLISQAV++GG
Sbjct:     4 ESKFKRICVFCGSSAGNKVSYKDAAIELGTELVSRNIDLVYGGGSIGLMGLISQAVFNGG 63

Query:    76 RHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEV 135
             RHVIGVIPKTLMPREITGETVGEVK VADMHQRKAEMAKHSDAFIALPGGYGTLEELLEV
Sbjct:    64 RHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEV 123

Query:   136 ITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKME 195
             ITWAQLGIHDKPVGLLNV+GYYNSLL+FIDKAVEEGFISP ARHIIVSAP+AKEL+ K+E
Sbjct:   124 ITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFISPTARHIIVSAPSAKELVKKLE 183

Query:   196 EYFPQHERVASKLSWENEQFGLNPKCDISR 225
             +Y P+HE+VASK SWE EQ GL+P C+ISR
Sbjct:   184 DYVPRHEKVASKKSWEMEQIGLSPTCEISR 213
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2084051 LOG4 "AT3G53450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143473 LOG6 "AT5G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039175 LOG2 "AT2G35990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132821 LOG5 "AT4G35190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143029 LOG8 "LONELY GUY 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5294 BA_5294 "decarboxylase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XDB8LOGLA_ORYSJ3, ., 2, ., 2, ., n, 10.82170.89770.9901nono
Q8L8B8LOG3_ARATH3, ., 2, ., 2, ., n, 10.82070.94220.9860nono
B7E7M8LOGL9_ORYSJ3, ., 2, ., 2, ., n, 10.70810.82220.8149nono
Q8RUN2LOG1_ARATH3, ., 2, ., 2, ., n, 10.85910.94661.0yesno
P47044YJF5_YEASTNo assigned EC number0.39910.91110.8367yesno
Q5BPS0LOG2_ARATH3, ., 2, ., 2, ., n, 10.72720.880.9295nono
Q8GW29LOG7_ARATH3, ., 2, ., 2, ., n, 10.80200.87550.9078nono
Q8H7U8LOGL3_ORYSJ3, ., 2, ., 2, ., n, 10.80690.89770.9573nono
Q9LYV8LOG6_ARATH3, ., 2, ., 2, ., n, 10.78680.87550.9800nono
Q9LFH3LOG4_ARATH3, ., 2, ., 2, ., n, 10.81810.92880.9720nono
O06986YVDD_BACSUNo assigned EC number0.43160.80880.9528yesno
Q8LBB7LOG5_ARATH3, ., 2, ., 2, ., n, 10.71350.88440.8728nono
P48636Y4923_PSEAENo assigned EC number0.46700.80880.9333yesno
Q0JBP5LOGL6_ORYSJ3, ., 2, ., 2, ., n, 10.80760.92440.832yesno
B9F166LOGL2_ORYSJ3, ., 2, ., 2, ., n, 10.78630.97770.9016yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.n10.994
3rd Layer3.2.20.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
pfam03641130 pfam03641, Lysine_decarbox, Possible lysine decarb 2e-66
TIGR00730178 TIGR00730, TIGR00730, TIGR00730 family protein 6e-62
COG1611205 COG1611, COG1611, Predicted Rossmann fold nucleoti 9e-52
TIGR00725159 TIGR00725, TIGR00725, TIGR00725 family protein 6e-08
>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase Back     alignment and domain information 
 Score =  200 bits (512), Expect = 2e-66
 Identities = 71/130 (54%), Positives = 91/130 (70%)

Query: 64  MGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALP 123
           MG ++    + G  VIG+IP  L P EI    V E+  V DMH+RKA MA+ +DAF+ALP
Sbjct: 1   MGAVADGALEAGGRVIGIIPNILAPEEIPNPIVTELIIVPDMHERKAAMARLADAFVALP 60

Query: 124 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVS 183
           GG+GTLEEL E++TW QLGIH KP+ LLN +GYY+ LL FID  VEEGFISP AR +I+ 
Sbjct: 61  GGFGTLEELFEILTWIQLGIHQKPIILLNPNGYYDPLLEFIDHMVEEGFISPAARELIIV 120

Query: 184 APNAKELMNK 193
             + +E + K
Sbjct: 121 VDDPEEAVEK 130

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130
>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein Back     alignment and domain information
>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|129808 TIGR00725, TIGR00725, TIGR00725 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 225
TIGR00730178 conserved hypothetical protein, DprA/Smf-related, 100.0
COG1611205 Predicted Rossmann fold nucleotide-binding protein 100.0
TIGR00725159 conserved hypothetical protein, DprA/Smf-related, 100.0
PF03641133 Lysine_decarbox: Possible lysine decarboxylase; In 100.0
TIGR00732220 dprA DNA protecting protein DprA. Disruption of th 99.66
PF02481212 DNA_processg_A: DNA recombination-mediator protein 99.36
PRK10736374 hypothetical protein; Provisional 99.31
COG0758350 Smf Predicted Rossmann fold nucleotide-binding pro 99.14
PF12694145 MoCo_carrier: Putative molybdenum carrier; InterPr 96.94
KOG3614 1381 consensus Ca2+/Mg2+-permeable cation channels (LTR 95.18
PF06908177 DUF1273: Protein of unknown function (DUF1273); In 94.89
PF05014113 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer 94.86
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 93.97
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 93.84
PF11071141 DUF2872: Protein of unknown function (DUF2872); In 92.79
PF1068671 DUF2493: Protein of unknown function (DUF2493); In 92.75
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 92.57
PRK10565508 putative carbohydrate kinase; Provisional 91.3
TIGR03646144 YtoQ_fam YtoQ family protein. Members of this fami 91.26
PF06258311 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP 91.11
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 90.68
PRK13660182 hypothetical protein; Provisional 90.16
COG3660329 Predicted nucleoside-diphosphate-sugar epimerase [ 89.77
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 89.67
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 88.45
PLN02605382 monogalactosyldiacylglycerol synthase 87.68
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 87.55
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 87.29
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 86.54
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 85.25
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 84.02
TIGR00661321 MJ1255 conserved hypothetical protein. This model 83.74
PF04101167 Glyco_tran_28_C: Glycosyltransferase family 28 C-t 83.51
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2 Back     alignment and domain information 
Probab=100.00  E-value=2e-54  Score=361.87  Aligned_cols=178  Identities=46%  Similarity=0.855  Sum_probs=170.4

Q ss_pred             ceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCceE
Q 027287           20 NRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVGEV   99 (225)
Q Consensus        20 ~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~~~   99 (225)
                      ++|||||||+.++++.|++.|++||++||++|++||||||..|+|+|+++||+++||+|+||+|..+..++.+++.+++.
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~   80 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL   80 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence            48999999999999999999999999999999999999996699999999999999999999999887677777788888


Q ss_pred             eecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccccC
Q 027287          100 KPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARH  179 (225)
Q Consensus       100 ~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~~~  179 (225)
                      +++++|++||.+|++.||+||++|||+|||+|++++|+|.|+|+|+||++++|.+|||+++++|+++++++||++++..+
T Consensus        81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~  160 (178)
T TIGR00730        81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK  160 (178)
T ss_pred             EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEcCCHHHHHHHHHhh
Q 027287          180 IIVSAPNAKELMNKMEEY  197 (225)
Q Consensus       180 ~i~~~~d~ee~~~~l~~~  197 (225)
                      .+++++|++|++++|+++
T Consensus       161 ~~~~~d~~~e~~~~i~~~  178 (178)
T TIGR00730       161 LIHVVSRPDELIEQVQNY  178 (178)
T ss_pred             cEEEcCCHHHHHHHHHhC
Confidence            999999999999999763

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1 Back     alignment and domain information
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway Back     alignment and domain information
>TIGR00732 dprA DNA protecting protein DprA Back     alignment and domain information
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins Back     alignment and domain information
>PRK10736 hypothetical protein; Provisional Back     alignment and domain information
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion] Back     alignment and domain information
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices Back     alignment and domain information
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain Back     alignment and domain information
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis Back     alignment and domain information
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61 Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>TIGR03646 YtoQ_fam YtoQ family protein Back     alignment and domain information
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PRK13660 hypothetical protein; Provisional Back     alignment and domain information
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
2a33_A215 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 3e-92
1ydh_A216 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 2e-64
1t35_A191 Crystal Structure Of A Hypothetical Protein Yvdd- A 1e-35
3qua_A199 Crystal Structure Of A Putative Uncharacterized Pro 6e-31
3sbx_A189 Crystal Structure Of A Putative Uncharacterized Pro 8e-21
1wek_A217 Crystal Structure Of The Conserved Hypothetical Pro 1e-04
1rcu_A195 X-Ray Structure Of Tm1055 Northeast Structural Geno 4e-04
1weh_A171 Crystal Structure Of The Conserved Hypothetical Pro 5e-04
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215 Back     alignment and structure 
Iteration: 1

 Score =  334 bits (856), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 167/204 (81%), Positives = 185/204 (90%)
Query: 15  NQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDG 74
            +SKF RICVFCGSS GKKS+Y+DAA++LG ELV+RNIDLVYGGGS+GL GL+SQAV+DG
Sbjct: 9   QKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDG 68
Query: 75  GRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLE 134
           GRHVIG+IPKTL PRE+TGETVGEV+ VAD HQRKAE AKHSDAFIALPGGYGTLEELLE
Sbjct: 69  GRHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLE 128
Query: 135 VITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPNAKELMNKM 194
           VITWAQLGIHDKPVGLLNVDGYYNSLL+FIDKAVEEGFISP AR IIVSAP AKEL+ K+
Sbjct: 129 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKL 188
Query: 195 EEYFPQHERVASKLSWENEQFGLN 218
           EEY P HERVA+KL WE E+ G +
Sbjct: 189 EEYAPCHERVATKLCWEXERIGYS 212
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At5g11950 Length = 216 Back     alignment and structure
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A Putative Lysine Decarboxylase Length = 191 Back     alignment and structure
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein And Possible Molybdenum Cofactor Protein From Mycobacterium Smegmatis Length = 199 Back     alignment and structure
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Marinum Bound To Adenosine 5'-Monophosphate Amp Length = 189 Back     alignment and structure
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1465 From Thermus Thermophilus Hb8 Length = 217 Back     alignment and structure
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics Consortium Target Vt76 Length = 195 Back     alignment and structure
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1887 From Thermus Thermophilus Hb8 Length = 171 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
2a33_A215 Hypothetical protein; structural genomics, protein 1e-120
1ydh_A216 AT5G11950; structural genomics, protein structure 1e-119
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 1e-107
3qua_A199 Putative uncharacterized protein; structural genom 1e-103
3sbx_A189 Putative uncharacterized protein; structural genom 1e-103
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 9e-68
1rcu_A195 Conserved hypothetical protein VT76; structural ge 8e-65
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 9e-64
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 2e-52
3gh1_A 462 Predicted nucleotide-binding protein; structural g 4e-30
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 5e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215 Back     alignment and structure
 Score =  338 bits (870), Expect = e-120
 Identities = 174/214 (81%), Positives = 195/214 (91%)

Query: 7   MEMEMEMNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGL 66
           ME++ E   +SKF RICVFCGSS GKKS+Y+DAA++LG ELV+RNIDLVYGGGS+GLMGL
Sbjct: 1   MEIKGESMQKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGL 60

Query: 67  ISQAVYDGGRHVIGVIPKTLMPREITGETVGEVKPVADMHQRKAEMAKHSDAFIALPGGY 126
           +SQAV+DGGRHVIG+IPKTLMPRE+TGETVGEV+ VADMHQRKAEMAKHSDAFIALPGGY
Sbjct: 61  VSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALPGGY 120

Query: 127 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNARHIIVSAPN 186
           GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL+FIDKAVEEGFISP AR IIVSAP 
Sbjct: 121 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPT 180

Query: 187 AKELMNKMEEYFPQHERVASKLSWENEQFGLNPK 220
           AKEL+ K+EEY P HERVA+KL WE E+ G + +
Sbjct: 181 AKELVKKLEEYAPCHERVATKLCWEMERIGYSSE 214
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216 Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191 Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199 Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171 Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
1ydh_A216 AT5G11950; structural genomics, protein structure 100.0
2a33_A215 Hypothetical protein; structural genomics, protein 100.0
3sbx_A189 Putative uncharacterized protein; structural genom 100.0
3qua_A199 Putative uncharacterized protein; structural genom 100.0
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 100.0
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 100.0
3gh1_A462 Predicted nucleotide-binding protein; structural g 100.0
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 100.0
3bq9_A460 Predicted rossmann fold nucleotide-binding domain 100.0
1rcu_A195 Conserved hypothetical protein VT76; structural ge 100.0
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 100.0
3maj_A382 DNA processing chain A; MCSG, PSI-2, structural ge 99.43
3uqz_A288 DNA processing protein DPRA; SAM and rossmann fold 99.4
3imk_A158 Putative molybdenum carrier protein; YP_461806.1, 97.75
2nx2_A181 Hypothetical protein YPSA; structural genomics, un 97.74
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 95.41
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 94.44
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 94.13
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 94.12
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 92.47
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 92.0
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 91.38
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 90.44
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 90.18
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 90.02
3ek6_A243 Uridylate kinase; UMPK unique GTP B site, alloster 89.49
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 88.85
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 88.4
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 88.39
3hbm_A282 UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je 87.68
1iir_A415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 87.16
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 86.46
1s2d_A167 Purine trans deoxyribosylase; ribosylate intermedi 86.44
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 86.33
3rpz_A279 ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str 84.31
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 81.81
3hbf_A454 Flavonoid 3-O-glucosyltransferase; glycosyltransfe 80.54
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
Probab=100.00  E-value=6e-58  Score=392.37  Aligned_cols=203  Identities=69%  Similarity=1.176  Sum_probs=178.6

Q ss_pred             hcccCCcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCC
Q 027287           13 MNNQSKFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREIT   92 (225)
Q Consensus        13 ~~~~~~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~   92 (225)
                      +..++++++|||||||+.++++.|++.|++||++||++|++||||||+.|+|+|+++||+++||+||||+|+.+.++|..
T Consensus         3 ~~~~~~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~   82 (216)
T 1ydh_A            3 DNQRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEIS   82 (216)
T ss_dssp             --CCCSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCC
T ss_pred             CCcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccc
Confidence            55678889999999999998999999999999999999999999999779999999999999999999999988888888


Q ss_pred             CCCCceEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCC
Q 027287           93 GETVGEVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGF  172 (225)
Q Consensus        93 ~~~~~~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gf  172 (225)
                      ++.+++++++++|++||.+|+++||+||++|||+|||+|+|++|||.|+++|+|||+|+|.+|||+++++|+++|+++||
T Consensus        83 ~~~~~~~~~~~~~~~Rk~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gf  162 (216)
T 1ydh_A           83 GETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGF  162 (216)
T ss_dssp             SSCCSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTS
T ss_pred             cCCCCcccccCCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCcEEEcCCHHHHHHHHHhhcCCccccccccccccccc
Q 027287          173 ISPNARHIIVSAPNAKELMNKMEEYFPQHERVASKLSWENEQF  215 (225)
Q Consensus       173 i~~~~~~~i~~~~d~ee~~~~l~~~~~~~~~~~~~~~w~~~~~  215 (225)
                      |++++.+++++++|++|+++.|+++++...+...+++|..++.
T Consensus       163 i~~~~~~~~~~~d~~ee~~~~l~~~~~~~~~~~~~~~~~~~~~  205 (216)
T 1ydh_A          163 IKPGARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEEL  205 (216)
T ss_dssp             SCHHHHTTEEEESSHHHHHHHHHHCC-----------------
T ss_pred             CChHHcCeEEEeCCHHHHHHHHHHhcccccccccccccchhhc
Confidence            9999999999999999999999999887777777899997543
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Back     alignment and structure
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Back     alignment and structure
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Back     alignment and structure
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2 Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 225
d2q4oa1183 c.129.1.1 (A:8-190) Hypothetical protein At2g37210 1e-56
d1ydhb_181 c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha 1e-55
d1t35a_179 c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus 5e-52
d1weka_208 c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16 2e-35
d1rcua_170 c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo 2e-34
d1weha_171 c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02 2e-32
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181 Back     information, alignment and structure
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170 Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
d1ydhb_181 Hypothetical protein At5g11950 {Thale cress (Arabi 100.0
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 100.0
d1t35a_179 Hypothetical protein YvdD {Bacillus subtilis [TaxI 100.0
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 100.0
d1weha_171 Hypothetical protein TT1887 (TTHA0294) {Thermus th 100.0
d1rcua_170 Hypothetical protein TM1055 {Thermotoga maritima [ 100.0
d2nx2a1177 Hypothetical protein YpsA {Bacillus subtilis [TaxI 97.05
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 94.54
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 93.84
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 93.11
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 89.04
d1iira_401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 85.05
d1kyha_275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 84.83
d2bona1295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 83.66
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 82.09
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.9e-57  Score=373.32  Aligned_cols=180  Identities=73%  Similarity=1.245  Sum_probs=175.0

Q ss_pred             CcceEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCeEEEcCCCccHHHHHHHHHHhcCCeEEEEeCCccccCCCCCCCCc
Q 027287           18 KFNRICVFCGSSAGKKSTYKDAAIELGKELVARNIDLVYGGGSVGLMGLISQAVYDGGRHVIGVIPKTLMPREITGETVG   97 (225)
Q Consensus        18 ~~~~V~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~aGG~viGIiP~~~~~~e~~~~~~~   97 (225)
                      ||++|||||||+.++++.|++.|++||+.||++||.||||||+.|+|+|+++||+++||+|+||+|..+.+.+..++.++
T Consensus         1 ~~k~v~Vf~gs~~~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~~~~l~~~e~~~~~~~   80 (181)
T d1ydhb_           1 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVG   80 (181)
T ss_dssp             CCSEEEEECCSCCCSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSCCCS
T ss_pred             CCcEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhcCCcccccchhhhhhhhcCCcccC
Confidence            68899999999999999999999999999999999999999999999999999999999999999998888888888899


Q ss_pred             eEeecCCHHHHHHHHHhhCCEEEEecCCcccHHHHHHHHHHHHhCCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCCccc
Q 027287           98 EVKPVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLTFIDKAVEEGFISPNA  177 (225)
Q Consensus        98 ~~~~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~Ei~~a~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~gfi~~~~  177 (225)
                      +++.+++|++||..|++.|||||+||||+|||+|++++|+|.|++.|+||++++|.+|||+++++|+++++++||++++.
T Consensus        81 ~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTLdEl~e~l~l~ql~~~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~  160 (181)
T d1ydhb_          81 DVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGA  160 (181)
T ss_dssp             EEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHHTSSCHHH
T ss_pred             cceeeccHHHHHHHHHHhCeeEEEeCCccchHHHHHHHHHHHHhcccCCCeEEEecCccHHHHHHHHHHHHHCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEcCCHHHHHHHHHhh
Q 027287          178 RHIIVSAPNAKELMNKMEEY  197 (225)
Q Consensus       178 ~~~i~~~~d~ee~~~~l~~~  197 (225)
                      .+.+.+++||+|++++|++|
T Consensus       161 ~~~~~~~d~~ee~~~~l~~~  180 (181)
T d1ydhb_         161 RNIVVSAPTAKELMEKMEEY  180 (181)
T ss_dssp             HTTEEEESSHHHHHHHHHHC
T ss_pred             cCeEEEeCCHHHHHHHHHhh
Confidence            99999999999999999986
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure