Citrus Sinensis ID: 027296

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVRVSTT
Secondary Structure (PSIPRED)
cccccccEEccccccEEccccccccccccccccccccccccccccEEcccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHccEEEEccccccHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccEEEcccccccccccccccHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccEEcccccccccccccccEEEEcccccEEcccccccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccccEEEEccccHccccHHHHHHHHHcEEccc
Coil and Loop (DISEMBL)
mstalpmrlllplssvsttnattpffnsidfpskflkspnpnfnffassshptqhswrarrtkktwlcgnmrkdqdmdglrseeenvigmfgsdedvgtqiptqaqsvvegsgavmvsefkpvpdvDYLQELLAIQQqgpraigffgtrnmgFMHQELIEILSYALVITKnhiytsgasgtNAAVIRGALraerpdlltvilpqslkkqppeSQELLAKVRVSTT
Flexible Loop (DISEMBL)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFassshptqhswrarrtkktwlcgnmrkdqdmdglrSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVIlpqslkkqppesqellakvrvstt
Low Complexity Region (SEG)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVRVSTT
Disordered region (IsUnstruct)
***************************************************************KTWLCG***************************************V*GSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVIL***********************
Disordered Region (DISOPRED)
***ALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFAS***************KTWLCGNM******************MFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP***************KVRV***
Disordered Region (DISEMBL)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASS***********RTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVRVSTT
Disordered Region (DISPRO)
*STALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMR**************VIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVRVS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVRVSTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
449444096	275	PREDICTED: uncharacterized protein LOC10	0.822	0.672	0.691	5e-72
388516675	288	unknown [Lotus japonicus]	0.804	0.628	0.729	5e-72
359478235	297	PREDICTED: uncharacterized protein LOC10	0.711	0.538	0.812	1e-71
224128754	212	predicted protein [Populus trichocarpa]	0.666	0.707	0.86	2e-71
255637577	268	unknown [Glycine max]	0.906	0.761	0.641	6e-71
225462553	286	PREDICTED: uncharacterized protein LOC10	0.693	0.545	0.807	9e-71
255547516	207	conserved hypothetical protein [Ricinus	0.644	0.700	0.868	4e-69
147865628	274	hypothetical protein VITISV_036268 [Viti	0.693	0.569	0.75	4e-68
147771568	213	hypothetical protein VITISV_028411 [Viti	0.671	0.708	0.841	1e-67
296085265	213	unnamed protein product [Vitis vinifera]	0.671	0.708	0.807	2e-67

>gi|449444096|ref|XP_004139811.1| PREDICTED: uncharacterized protein LOC101209189 [Cucumis sativus] gi|449492610|ref|XP_004159047.1| PREDICTED: uncharacterized LOC101209189 [Cucumis sativus]

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/204 (69%), Positives = 160/204 (78%), Gaps = 19/204 (9%)

Query: 20  NATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDG 79
           N + PFF           SP+PNF  F SS        R+      W+ G++R D D D 
Sbjct: 27  NISNPFF-----------SPSPNFPLFVSSRR------RSSLNTSLWIRGHIRGDTDGDS 69

Query: 80  LRSEEENVIGMFG--SDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQ 137
              ++ N + MFG  S+++ GTQIPTQAQS+VEGSG+VMVSEFKPVPDVDYLQELLAIQQ
Sbjct: 70  SVPQKNNTMRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQELLAIQQ 129

Query: 138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDL 197
           QGPRAIGFFGTRNMGF+HQELIEILSYA+VITKNHIYTSGASGTNAAVIRGALRAE+P+L
Sbjct: 130 QGPRAIGFFGTRNMGFLHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPEL 189

Query: 198 LTVILPQSLKKQPPESQELLAKVR 221
           LTVILPQSLKKQPPESQELL+KVR
Sbjct: 190 LTVILPQSLKKQPPESQELLSKVR 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516675|gb|AFK46399.1| unknown [Lotus japonicus]

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 140/192 (72%), Positives = 155/192 (80%), Gaps = 11/192 (5%)

Query: 40  NPNFNFFASSSHPTQHS-----WRARRTK-----KTWLCGNMRKDQDMDGLRSEEENVIG 89
           NPNFN F S S   QH      W    +K     +TWL G+M++DQD      E EN +G
Sbjct: 36  NPNFNAF-SVSLSQQHRRLGGYWNKTASKPFFPRRTWLYGHMKRDQDRHTPDYELENGLG 94

Query: 90  MFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTR 149
           +FGSDE  GTQIPTQAQS+VEG GA+ V+E+KPVPDVDYLQELLAIQQQGPRAIGFFGTR
Sbjct: 95  LFGSDEQRGTQIPTQAQSLVEGPGAIRVAEYKPVPDVDYLQELLAIQQQGPRAIGFFGTR 154

Query: 150 NMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ 209
           NMGFMHQELIEILSYA+VITKNHIYT GASGTNAAVIRGALRAE+PD LTVILPQSL KQ
Sbjct: 155 NMGFMHQELIEILSYAMVITKNHIYTPGASGTNAAVIRGALRAEKPDFLTVILPQSLSKQ 214

Query: 210 PPESQELLAKVR 221
           PPESQELL+KV+
Sbjct: 215 PPESQELLSKVK 226

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478235|ref|XP_002275901.2| PREDICTED: uncharacterized protein LOC100242287 [Vitis vinifera]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/160 (81%), Positives = 146/160 (91%)

Query: 62  TKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFK 121
           ++  W+CG+MRKDQD    R EEEN   +F SDE+V +Q+PTQAQS+VEGSGAV+VSEFK
Sbjct: 76  SRHKWICGHMRKDQDGGSWRDEEENPGRIFCSDEEVASQVPTQAQSLVEGSGAVLVSEFK 135

Query: 122 PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGT 181
           PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGF HQELIEILSYA+VITKNHI+TSGASGT
Sbjct: 136 PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFTHQELIEILSYAMVITKNHIFTSGASGT 195

Query: 182 NAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVR 221
           NAAVIRGALRAE+P+LLTVILPQSLK QPPESQELL+KV+
Sbjct: 196 NAAVIRGALRAEKPELLTVILPQSLKMQPPESQELLSKVK 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128754|ref|XP_002328958.1| predicted protein [Populus trichocarpa] gi|222839192|gb|EEE77543.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/150 (86%), Positives = 143/150 (95%)

Query: 72  RKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQE 131
           R DQ+MD  ++EEEN+  MFGS+ED G+QIPTQAQ++VEGSG V++SEFKPVPDVDYLQE
Sbjct: 1   RNDQEMDSWKAEEENIECMFGSNEDTGSQIPTQAQTIVEGSGTVVLSEFKPVPDVDYLQE 60

Query: 132 LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 191
           LLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR
Sbjct: 61  LLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 120

Query: 192 AERPDLLTVILPQSLKKQPPESQELLAKVR 221
           AE+P+LLTVILPQSLKKQPPESQELLAKV+
Sbjct: 121 AEKPELLTVILPQSLKKQPPESQELLAKVQ 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637577|gb|ACU19114.1| unknown [Glycine max]

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 147/229 (64%), Positives = 170/229 (74%), Gaps = 25/229 (10%)

Query: 1   MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFN--FFASSSHPTQHSWR 58
           MS  + + L L  SS+    A+ P +N           PNPNFN  F  S S    H  R
Sbjct: 1   MSATVTLTLNLCRSSIV---ASCPHYN---------HKPNPNFNALFSFSLSLSLSHHRR 48

Query: 59  ARRTKK------TWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGS 112
               KK      TWL G+M++D+D      E EN + +FGSDE++ TQIPTQAQS+VEGS
Sbjct: 49  IAICKKPFSSRRTWLHGHMKRDRDY-----ELENGLALFGSDEELATQIPTQAQSLVEGS 103

Query: 113 GAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNH 172
           G++ V+EFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEI SYA+VITKNH
Sbjct: 104 GSIRVAEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEIFSYAMVITKNH 163

Query: 173 IYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVR 221
           IYT GASGTNAAVIRGALRAE+P+LLTVILPQSL+KQPPESQELL+KV+
Sbjct: 164 IYTFGASGTNAAVIRGALRAEKPELLTVILPQSLRKQPPESQELLSKVK 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462553|ref|XP_002267280.1| PREDICTED: uncharacterized protein LOC100261763 [Vitis vinifera]

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 147/156 (94%)

Query: 66  WLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD 125
           WLCG MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D
Sbjct: 69  WLCGYMRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTD 128

Query: 126 VDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAV 185
           +DYLQELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHIYTSGASGTNAAV
Sbjct: 129 MDYLQELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHIYTSGASGTNAAV 188

Query: 186 IRGALRAERPDLLTVILPQSLKKQPPESQELLAKVR 221
           IRGALRAE+P+LLTVILPQSLKKQPPESQELL+KV+
Sbjct: 189 IRGALRAEKPELLTVILPQSLKKQPPESQELLSKVQ 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547516|ref|XP_002514815.1| conserved hypothetical protein [Ricinus communis] gi|223545866|gb|EEF47369.1| conserved hypothetical protein [Ricinus communis]

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 126/145 (86%), Positives = 138/145 (95%)

Query: 77  MDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQ 136
           MD  ++EEEN++ MFG DED GTQIPTQAQS+VEGS  V+V+E+KPVPDVDYLQELLAIQ
Sbjct: 1   MDSWKAEEENLVSMFGPDEDTGTQIPTQAQSLVEGSSTVVVAEYKPVPDVDYLQELLAIQ 60

Query: 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPD 196
           QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI+TSGASGTNAAVIRGALRAE+P+
Sbjct: 61  QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIFTSGASGTNAAVIRGALRAEKPE 120

Query: 197 LLTVILPQSLKKQPPESQELLAKVR 221
           LLTVILPQSLKKQPPESQELLAKV+
Sbjct: 121 LLTVILPQSLKKQPPESQELLAKVQ 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865628|emb|CAN78846.1| hypothetical protein VITISV_036268 [Vitis vinifera]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 147/168 (87%), Gaps = 12/168 (7%)

Query: 66  WLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD 125
           WLCG MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D
Sbjct: 58  WLCGYMRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTD 117

Query: 126 VDYLQ------------ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI 173
           +DYLQ            ELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHI
Sbjct: 118 MDYLQVCHFVGLKVYMEELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHI 177

Query: 174 YTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVR 221
           YTSGASGTNAAVIRGALRAE+P+LLTVILPQSLKKQPPESQELL+KV+
Sbjct: 178 YTSGASGTNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVQ 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771568|emb|CAN60471.1| hypothetical protein VITISV_028411 [Vitis vinifera] gi|296084366|emb|CBI24754.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/151 (84%), Positives = 139/151 (92%)

Query: 71  MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 130
           MRKDQD    R EEEN   +F SDE+V +Q+PTQAQS+VEGSGAV+VSEFKPVPDVDYLQ
Sbjct: 1   MRKDQDGGSWRDEEENPGRIFCSDEEVASQVPTQAQSLVEGSGAVLVSEFKPVPDVDYLQ 60

Query: 131 ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 190
           ELLAIQQQGPRAIGFFGTRNMGF HQELIEILSYA+VITKNHI+TSGASGTNAAVIRGAL
Sbjct: 61  ELLAIQQQGPRAIGFFGTRNMGFTHQELIEILSYAMVITKNHIFTSGASGTNAAVIRGAL 120

Query: 191 RAERPDLLTVILPQSLKKQPPESQELLAKVR 221
           RAE+P+LLTVILPQSLK QPPESQELL+KV+
Sbjct: 121 RAEKPELLTVILPQSLKMQPPESQELLSKVK 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085265|emb|CBI28997.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/151 (80%), Positives = 143/151 (94%)

Query: 71  MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 130
           MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D+DYLQ
Sbjct: 1   MRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTDMDYLQ 60

Query: 131 ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 190
           ELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHIYTSGASGTNAAVIRGAL
Sbjct: 61  ELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHIYTSGASGTNAAVIRGAL 120

Query: 191 RAERPDLLTVILPQSLKKQPPESQELLAKVR 221
           RAE+P+LLTVILPQSLKKQPPESQELL+KV+
Sbjct: 121 RAEKPELLTVILPQSLKKQPPESQELLSKVQ 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:1005716651	289	AT2G43945 [Arabidopsis thalian	0.973	0.757	0.633	1.1e-64
TAIR|locus:2080452	288	AT3G59870 "AT3G59870" [Arabido	0.96	0.75	0.610	2.1e-61

TAIR|locus:1005716651 AT2G43945 [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 145/229 (63%), Positives = 176/229 (76%)

Query:     1 MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSH--PTQH--- 55
             MS++LP+RLLLPL++ S  +   P  +S   PS F +S NPNF    SSS    +Q    
Sbjct:     1 MSSSLPLRLLLPLTT-SLISPPPPPPDSFHAPSSF-RSKNPNFKRRLSSSSCCSSQSQLF 58

Query:    56 SWRARRTKK-TWLC--GNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGS 112
             S R R   +   +C   +MR  ++ + L  +++++  +  SDED G +IPTQAQ++VEGS
Sbjct:    59 SGRCRSYSRCVTMCLPEHMRNQENTEILTDKDDHIECVLESDEDSGLRIPTQAQAIVEGS 118

Query:   113 GAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNH 172
             G+V VSE KP  DVDY+QELLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYA+VITKNH
Sbjct:   119 GSVAVSELKPAADVDYIQELLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYAMVITKNH 178

Query:   173 IYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVR 221
             IYTSGASGTNAAVIRGALRAERP+LLTVILPQSLKKQPPESQELL+KV+
Sbjct:   179 IYTSGASGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQ 227

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2080452 AT3G59870 "AT3G59870" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 141/231 (61%), Positives = 175/231 (75%)

Query:     1 MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQ-HSWRA 59
             MS+ALP++LLLPL++ S     +PF +  D P+ F +  + +    +S S   Q  S R 
Sbjct:     1 MSSALPLKLLLPLTTTSLL--PSPFRS--DNPN-FYRRRSSSSTSCSSQSQSFQLFSVRR 55

Query:    60 RRTKKTW----LC-GNMRKDQD-MDGLRSEEENVIGMFGSDEDV---GTQIPTQAQSVVE 110
             RR++ +     +C     +DQD +D   ++E+NV   F SDED    G +IPTQAQ++VE
Sbjct:    56 RRSRSSSPSIPMCFPEQTRDQDDVDSWVNKEDNVTCRFDSDEDTTTTGLRIPTQAQAIVE 115

Query:   111 GSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170
             G G++ VSE + VPDVDY+QELLAIQQQGPR IGFFGTRNMGFMHQELI+ILSYA+VITK
Sbjct:   116 GPGSLAVSELQRVPDVDYIQELLAIQQQGPRTIGFFGTRNMGFMHQELIQILSYAMVITK 175

Query:   171 NHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVR 221
             NHIYTSGA+GTNAAVIRGALRAERP+LLTVILPQSLKKQPPESQELL+KV+
Sbjct:   176 NHIYTSGAAGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQ 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       225   0.00077  113 3  11 22  0.41    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.99u 0.15s 20.14t   Elapsed:  00:00:01
  Total cpu time:  19.99u 0.15s 20.14t   Elapsed:  00:00:01
  Start:  Fri May 10 08:52:38 2013   End:  Fri May 10 08:52:39 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PF02481	212	DNA_processg_A: DNA recombination-mediator protein	98.46
TIGR00732	220	dprA DNA protecting protein DprA. Disruption of th	97.92
TIGR00725	159	conserved hypothetical protein, DprA/Smf-related,	97.44
PRK10736	374	hypothetical protein; Provisional	97.04
COG0758	350	Smf Predicted Rossmann fold nucleotide-binding pro	95.54
TIGR00730	178	conserved hypothetical protein, DprA/Smf-related,	93.66
COG1611	205	Predicted Rossmann fold nucleotide-binding protein	88.91
PRK13660	182	hypothetical protein; Provisional	83.52
PF06908	177	DUF1273: Protein of unknown function (DUF1273); In	81.31

>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins

Probab=98.46  E-value=8.6e-07  Score=74.35  Aligned_cols=82  Identities=26%  Similarity=0.315  Sum_probs=61.7

Q ss_pred             hCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecCcccC-CChhHHHH
Q 027296          138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQEL  216 (225)
Q Consensus       138 ~g~rrIa~lGsRhvp~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~r-Qp~Es~el  216 (225)
                      .-.+.|||.|||++.=-..+..+-+.+.|+..|..|++.+|.|+.+++.+|||++ +...+ +|||..|++ .|.|.+++
T Consensus        42 ~~~~~iaIvGsR~~s~~g~~~a~~l~~~l~~~g~~vvSGlA~GiD~~ah~~al~~-~g~tI-aVl~~gl~~~yP~~n~~l  119 (212)
T PF02481_consen   42 NKQPSIAIVGSRNPSEYGLKFAKKLARELAKAGIVVVSGLAKGIDAAAHRGALDA-GGPTI-AVLACGLDNIYPKENREL  119 (212)
T ss_dssp             GGS-EEEEE--SS--HHHHHHHHHHHHHHHHHT-EEEE---TTHHHHHHHHHTTT----EE-EE-SS-TTS-SSGGGHHH
T ss_pred             ccCceEEEEcCCCCCHHHHHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHc-cCCEE-EEECCCcccccchhhHHH
Confidence            3478999999999999999999999999999999999999999999999999999 44444 458999987 59999999


Q ss_pred             HHHhh
Q 027296          217 LAKVR  221 (225)
Q Consensus       217 Le~V~  221 (225)
                      .+++.
T Consensus       120 ~~~i~  124 (212)
T PF02481_consen  120 AERIL  124 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99987

In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.

>TIGR00732 dprA DNA protecting protein DprA

Probab=97.92  E-value=6.8e-05  Score=63.60  Aligned_cols=79  Identities=22%  Similarity=0.261  Sum_probs=69.6

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecCcccCC-ChhHHHHHHH
Q 027296          141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLAK  219 (225)
Q Consensus       141 rrIa~lGsRhvp~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~rQ-p~Es~elLe~  219 (225)
                      +.|||.|||+..--..++.+-+++.|+..|-.|++-||-|+-+|+.|||+++..  .--.|||..|++- |.|.+++.++
T Consensus        45 ~~iaIvGsR~~s~~~~~~a~~l~~~l~~~g~~IVSG~A~GiD~~ah~~al~~~g--~tIaVl~~gld~~yp~~n~~l~~~  122 (220)
T TIGR00732        45 RKVAIVGTRRPTKYGERWTRKLAEELAKNGVTIVSGLALGIDGIAHKAALKVNG--RTIAVLGTGLDQIYPRQNSKLAAK  122 (220)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHHhCCCEEEcCchhhHHHHHHHHHHHcCC--CEEEEECCCCccCCchhhHHHHHH
Confidence            789999999998889999999999999999999999999999999999999832  3335899999886 7888898888


Q ss_pred             hh
Q 027296          220 VR  221 (225)
Q Consensus       220 V~  221 (225)
                      +.
T Consensus       123 i~  124 (220)
T TIGR00732       123 IA  124 (220)
T ss_pred             HH
Confidence            75

Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.

>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1

Probab=97.44  E-value=0.00047  Score=55.88  Aligned_cols=65  Identities=26%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecCccc
Q 027296          141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLK  207 (225)
Q Consensus       141 rrIa~lGsRhvp~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~  207 (225)
                      ++||++|+|+.+=-+++..+-|.+.|+..|+.|++=|+.|.=.|+-|||+++ ... ..=|||+.+.
T Consensus         2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~Gg~~GlM~a~a~ga~~~-gg~-viGVlp~~l~   66 (159)
T TIGR00725         2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILINGGRTGVMEAVSKGAREA-GGL-VVGILPDEDF   66 (159)
T ss_pred             eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEcCCchhHHHHHHHHHHHC-CCe-EEEECChhhc
Confidence            7899999999988999999999999999999999978899999999999988 332 2336898874

This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.

>PRK10736 hypothetical protein; Provisional

Probab=97.04  E-value=0.0035  Score=58.17  Aligned_cols=79  Identities=18%  Similarity=0.234  Sum_probs=67.4

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecCcccC-CChhHHHHHHH
Q 027296          141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQELLAK  219 (225)
Q Consensus       141 rrIa~lGsRhvp~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~r-Qp~Es~elLe~  219 (225)
                      +.|||.|||++.---....+-+++.|+..|-.|+.-+|-|+-+++-+|||.+..+  --.||+-.|++ -|+|.+++.++
T Consensus       108 ~~iaiVGsR~~s~yg~~~~~~l~~~la~~g~~IVSGlA~GiD~~AH~~aL~~~g~--TIaVlg~Gld~~YP~~n~~L~~~  185 (374)
T PRK10736        108 PQLAVVGSRAHSWYGERWGRLFCEELAKNGLTITSGLARGIDGVAHRAALQAGGK--TIAVLGNGLENIYPRRHARLAES  185 (374)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECcchhhHHHHHHHHHHHcCCC--EEEEECCCCCccCCHhHHHHHHH
Confidence            6799999999999999999999999999887666666899999999999998332  33488999987 48889999988


Q ss_pred             hh
Q 027296          220 VR  221 (225)
Q Consensus       220 V~  221 (225)
                      +.
T Consensus       186 I~  187 (374)
T PRK10736        186 II  187 (374)
T ss_pred             HH
Confidence            83

>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]

Probab=95.54  E-value=0.11  Score=48.05  Aligned_cols=117  Identities=19%  Similarity=0.247  Sum_probs=88.5

Q ss_pred             cccccccCCccccCCCCccchhhhcccceeeecccccCCChhHHHHHHHHHhhCCceEEEecccccchhHHHHHHHHHHH
Q 027296           86 NVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYA  165 (225)
Q Consensus        86 ~~~~~f~~d~~~~~~iptq~~~~v~g~~~v~~~~~~~~p~vD~lqELaaiQq~g~rrIa~lGsRhvp~~hq~LIEllsyA  165 (225)
                      ....+++.+|+   +-|..-..+-..+..+-.+.     ++|++.+         +.+||+|||++...-.+..+.++..
T Consensus        74 ~~~~~i~~~d~---~YP~~Lk~i~~pP~vLf~kG-----nl~ll~~---------~~vaIVGsR~~S~~g~~~~~~~a~~  136 (350)
T COG0758          74 PGIKIITLGDE---DYPKLLKEINDPPPVLFYKG-----NLDLLEA---------PSVAIVGSRKPSKYGLDYTRDLAEY  136 (350)
T ss_pred             cCCeEeccCCc---cchHHHHhccCCCeEEEEec-----CHhHhcc---------CceEEEeCCCCCHhHHHHHHHHHHH
Confidence            34556677666   67777766666555444333     2444433         8899999999999999999999999


Q ss_pred             HHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEE-EecCcccCC-ChhHHHHHHHhhh
Q 027296          166 LVITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQSLKKQ-PPESQELLAKVRV  222 (225)
Q Consensus       166 lvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTV-iLPQSL~rQ-p~Es~elLe~V~n  222 (225)
                      |+..|--|++-+|-|.-+++-++||.+.   -.|| ||.-.+++= |++-+.+.+++..
T Consensus       137 L~~~g~~IvSGlA~GID~~AH~aaL~~~---G~TiaVl~~Gld~iYP~~n~~l~~~i~~  192 (350)
T COG0758         137 LAQNGITIVSGLARGIDTEAHKAALNAG---GKTIAVLATGLDKIYPRENIKLAEKIAE  192 (350)
T ss_pred             HHhCCeEEEecCcceecHHHHHHHHHcC---CcEEEEEcCCCCccCChhhHHHHHHHHh
Confidence            9999999999999999999999999993   3355 567777764 5677777777643

>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2

Probab=93.66  E-value=0.25  Score=41.15  Aligned_cols=65  Identities=17%  Similarity=0.123  Sum_probs=50.5

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHhhCCeeEecCC-CcchHHHHHhhhhccCCCeeEEEecCccc
Q 027296          141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLK  207 (225)
Q Consensus       141 rrIa~lGsRhvp~~--hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRGalrae~p~lLTViLPQSL~  207 (225)
                      |+||++|+-..+.-  +.+..+-+.+.|+..|+.|+|-|+ .|.=-||-|||+++.  ....=|+|+.|.
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~g--G~viGi~p~~l~   68 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG--GTAVGVNPSGLF   68 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcC--CeEEEecchhhh
Confidence            58999988665333  445677789999999999999997 899999999999872  233347887764

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.

>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

Probab=88.91  E-value=2.4  Score=36.34  Aligned_cols=73  Identities=33%  Similarity=0.302  Sum_probs=56.2

Q ss_pred             HhhCCceEEEe-cccc--cchhHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecCcccCCC
Q 027296          136 QQQGPRAIGFF-GTRN--MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQP  210 (225)
Q Consensus       136 Qq~g~rrIa~l-GsRh--vp~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~rQp  210 (225)
                      -+.+-+.|+++ |+.+  .+--..++-.-+.++++.-|+-|||=|..|+=.|+-|||+++  -...+=|+|.++..|-
T Consensus        10 ~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~GiMea~~~gA~~~--gg~~vGi~p~~~~~~e   85 (205)
T COG1611          10 LFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGPGVMEAVARGALEA--GGLVVGILPGLLHEQE   85 (205)
T ss_pred             cccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCchhhhhHHHHHHHHc--CCeEEEecCCCchhhc
Confidence            34567777765 5554  444456777788999999999999999999999999999976  3445557888887763

>PRK13660 hypothetical protein; Provisional

Probab=83.52  E-value=5.1  Score=34.24  Aligned_cols=82  Identities=24%  Similarity=0.275  Sum_probs=53.9

Q ss_pred             ceEEEecccccch------------hHHHHHHHHHHHHHhhCCeeEecCCCcchH--HHHHhhhhccCCCe-eEEEecCc
Q 027296          141 RAIGFFGTRNMGF------------MHQELIEILSYALVITKNHIYTSGASGTNA--AVIRGALRAERPDL-LTVILPQS  205 (225)
Q Consensus       141 rrIa~lGsRhvp~------------~hq~LIEllsyAlvl~gn~i~TSGA~GtNa--AvIRGalrae~p~l-LTViLPQS  205 (225)
                      +++||-|-|...+            +-..|-+-|..++-..=-++||+||-|+--  |=+--.|+.+-|++ |-+++|=.
T Consensus         2 k~~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~   81 (182)
T PRK13660          2 KRLLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFE   81 (182)
T ss_pred             eEEEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCcc
Confidence            5788888888877            333333444444445557899999999864  45555678877886 66677732


Q ss_pred             c--cCCChhHHHHHHHhhh
Q 027296          206 L--KKQPPESQELLAKVRV  222 (225)
Q Consensus       206 L--~rQp~Es~elLe~V~n  222 (225)
                      =  ++=.++.|+.+.+++.
T Consensus        82 ~q~~~W~e~~q~~y~~i~~  100 (182)
T PRK13660         82 EHGENWNEANQEKLANILK  100 (182)
T ss_pred             chhhcCCHHHHHHHHHHHH
Confidence            1  2225778888777643

>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain

Probab=81.31  E-value=13  Score=31.21  Aligned_cols=79  Identities=23%  Similarity=0.308  Sum_probs=44.2

Q ss_pred             ceEEEeccccc------------chhHHHHHHHHHHHHHhhCCeeEecCCCcchH--HHHHhhhhccCCCe-eEEEecCc
Q 027296          141 RAIGFFGTRNM------------GFMHQELIEILSYALVITKNHIYTSGASGTNA--AVIRGALRAERPDL-LTVILPQS  205 (225)
Q Consensus       141 rrIa~lGsRhv------------p~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa--AvIRGalrae~p~l-LTViLPQS  205 (225)
                      ++|+|-|-|-.            .++-..|-+.+..++-..=-++||+||-|+-.  |-+--.|+.+-|++ |.+++|= 
T Consensus         2 ~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf-   80 (177)
T PF06908_consen    2 KRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPF-   80 (177)
T ss_dssp             -EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESS-
T ss_pred             eEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcc-
Confidence            56777776644            23445555555556666667999999999864  44445567778864 6677773 


Q ss_pred             ccCC----ChhHHHHHHHhh
Q 027296          206 LKKQ----PPESQELLAKVR  221 (225)
Q Consensus       206 L~rQ----p~Es~elLe~V~  221 (225)
                       ..|    +++.|+.+.+++
T Consensus        81 -~~q~~~W~~~~q~~y~~il   99 (177)
T PF06908_consen   81 -ENQGNNWNEANQERYQSIL   99 (177)
T ss_dssp             -B-TTTTS-HHHHHHHHHHH
T ss_pred             -cchhhcCCHHHHHHHHHHH
Confidence             344    457888887775

; PDB: 2NX2_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 35/281 (12%), Positives = 62/281 (22%), Gaps = 101/281 (35%)

Query: 7   MRLLLPLSSVSTTNATTPFFNSIDFPS-KFL--------KSPNPNFNFFASSSHPTQ--- 54
              L              F   +   + KFL        + P+     +           
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 55  ------HSWRARRTK--KTWLCGNMRKDQDMDGLRSEEENVI--GMFGS----------- 93
                 +  R +     +  L            LR  + NV+  G+ GS           
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLE----------LRPAK-NVLIDGVLGSGKTWVALDVCL 172

Query: 94  DEDVGTQIPTQAQSVVEGSGAV----MVSEFKPVPDVDYLQELLA-----------IQQQ 138
              V  ++             +    + +   P   ++ LQ+LL                
Sbjct: 173 SYKVQCKMD----------FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 139 GPRAIGFFGTRNMGFMHQE------LI-------EILSY------ALVITKNHIYTSGAS 179
               I          +  +      L+       +  +        L+ T+    T   S
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 180 GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKV 220
                 I           LT          P E + LL K 
Sbjct: 283 AATTTHISLD---HHSMTLT----------PDEVKSLLLKY 310

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
3maj_A	382	DNA processing chain A; MCSG, PSI-2, structural ge	97.6
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	97.56
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	97.32
3qua_A	199	Putative uncharacterized protein; structural genom	97.3
2a33_A	215	Hypothetical protein; structural genomics, protein	97.3
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	97.27
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	97.24
3uqz_A	288	DNA processing protein DPRA; SAM and rossmann fold	97.09
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	96.98
3sbx_A	189	Putative uncharacterized protein; structural genom	96.97
1ydh_A	216	AT5G11950; structural genomics, protein structure	96.7
2nx2_A	181	Hypothetical protein YPSA; structural genomics, un	93.96
3gh1_A	462	Predicted nucleotide-binding protein; structural g	93.8
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	93.03

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=97.60  E-value=0.00031  Score=63.72  Aligned_cols=78  Identities=22%  Similarity=0.245  Sum_probs=69.7

Q ss_pred             CceEEEecccccchhHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecCcccCC-ChhHHHHHH
Q 027296          140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLA  218 (225)
Q Consensus       140 ~rrIa~lGsRhvp~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~rQ-p~Es~elLe  218 (225)
                      .+.|||.|||++.---.+..+-+++.|+..|-.|++-+|-|+-+|+-||||.+ .   --.||+-.+++- |++.+++.+
T Consensus       127 ~~~vAIVGsR~~s~yG~~~a~~l~~~La~~g~~VVSGlA~GID~~AH~~AL~~-g---TIaVLg~Gld~~YP~~n~~L~~  202 (382)
T 3maj_A          127 RPMIAIVGSRNASGAGLKFAGQLAADLGAAGFVVISGLARGIDQAAHRASLSS-G---TVAVLAGGHDKIYPAEHEDLLL  202 (382)
T ss_dssp             SCEEEEECCSSCCHHHHHHHHHHHHHHHHHTCEEEECCCTTHHHHHHHHHTTT-C---EEEECSSCTTSCSSGGGHHHHH
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHHHHHCCcEEEeCCccCHHHHHHHHHHhC-C---eEEEECCCcCccCCHhhHHHHH
Confidence            57899999999999999999999999999999888888999999999999997 3   445889999985 889999998


Q ss_pred             Hhh
Q 027296          219 KVR  221 (225)
Q Consensus       219 ~V~  221 (225)
                      ++.
T Consensus       203 ~I~  205 (382)
T 3maj_A          203 DII  205 (382)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            884

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A

Probab=97.56  E-value=0.00025  Score=57.48  Aligned_cols=65  Identities=18%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             CCceEEEecccc--cchhHHHHHHHHHHHHHhhCCeeEecCC-CcchHHHHHhhhhccCCCeeEEEecCc
Q 027296          139 GPRAIGFFGTRN--MGFMHQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQS  205 (225)
Q Consensus       139 g~rrIa~lGsRh--vp~~hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRGalrae~p~lLTViLPQS  205 (225)
                      ..+.||++|||+  ..=-..+..+-+.+.|+..|..|+|=|+ .|.=.|+-|||+++ .-.- .=|||+.
T Consensus        12 ~~~~VaV~Gs~~~g~~~~~~~~A~~lg~~La~~g~~lVsGGg~~Gim~aa~~gAl~~-gG~t-igVlP~~   79 (176)
T 2iz6_A           12 RKPIIGVMGPGKADTAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEA-GGTT-IGVLPGP   79 (176)
T ss_dssp             CCCEEEEECCCGGGCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHT-TCCE-EEEECC-
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCccCHhHHHHHHHHHc-CCEE-EEEeCch
Confidence            457899999999  6667788999999999999999999999 99999999999998 3333 3357876

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1

Probab=97.32  E-value=0.0007  Score=54.91  Aligned_cols=65  Identities=14%  Similarity=0.143  Sum_probs=54.7

Q ss_pred             ceEEEecccccc--hhHHHHHHHHHHHHHhhCCeeEecCCC-cchHHHHHhhhhccCCCeeEEEecCccc
Q 027296          141 RAIGFFGTRNMG--FMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (225)
Q Consensus       141 rrIa~lGsRhvp--~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~  207 (225)
                      |+||++|+++.+  =-+.+..+-+.+.|+..|..|+|-|+. |.=.|+-|||+.+ .- ...=|+|..|.
T Consensus         2 ~~V~V~gss~~~~~~~~~~~A~~lg~~La~~g~~lV~GGg~~GiM~aa~~gA~~~-gG-~~iGv~p~~l~   69 (191)
T 1t35_A            2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMEN-GG-TAIGVMPSGLF   69 (191)
T ss_dssp             CEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTT-TC-CEEEEEETTCC
T ss_pred             CEEEEEECCCCCCChHHHHHHHHHHHHHHHCCCEEEECCCcccHHHHHHHHHHHc-CC-eEEEEeCchhc
Confidence            679999999974  457788899999999999999999997 9999999999998 33 34446788765

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}

Probab=97.30  E-value=0.00085  Score=55.62  Aligned_cols=68  Identities=13%  Similarity=0.131  Sum_probs=56.3

Q ss_pred             hCCceEEEe-cccccchhHHHHHHHHHHHHHhhCCeeEecCCC-cchHHHHHhhhhccCCCeeEEEecCccc
Q 027296          138 QGPRAIGFF-GTRNMGFMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (225)
Q Consensus       138 ~g~rrIa~l-GsRhvp~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~  207 (225)
                      .+.++||++ |+|...--+.+..+-+.+.|+..|+.|+|-|+. |.=.||-|||+++.  -...-|+|+.|.
T Consensus        20 ~~~~~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~lV~GGG~~GlM~a~~~gA~~~G--G~viGv~p~~l~   89 (199)
T 3qua_A           20 DRQWAVCVYCASGPTHPELLELAAEVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKG--GHTVGVIPKALV   89 (199)
T ss_dssp             -CCCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHHTT--CCEEEEEEGGGT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcC--CcEEEEeCchhh
Confidence            667899999 578666777888999999999999999999986 99999999999883  344557888773

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A

Probab=97.30  E-value=0.00049  Score=57.21  Aligned_cols=69  Identities=22%  Similarity=0.195  Sum_probs=55.4

Q ss_pred             hCCceEEEe-cccccch-hHHHHHHHHHHHHHhhCCeeEecCCC-cchHHHHHhhhhccCCCeeEEEecCcccC
Q 027296          138 QGPRAIGFF-GTRNMGF-MHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLKK  208 (225)
Q Consensus       138 ~g~rrIa~l-GsRhvp~-~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~r  208 (225)
                      ..-++||++ |||+..= -..+..+-+.+.|+..|..|+|-|+. |.=.|+-|||+.+. -.- .=|||..+..
T Consensus        11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsGGg~~GiM~aa~~gAl~~G-G~t-iGVlP~~~~~   82 (215)
T 2a33_A           11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGG-RHV-IGIIPKTLMP   82 (215)
T ss_dssp             CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTT-CCE-EEEEESSCC-
T ss_pred             CCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEECCChhhHhHHHHHHHHHcC-CcE-EEEcchHhcc
Confidence            345679999 9999643 35788999999999999999999996 99999999999983 333 3357988754

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1

Probab=97.27  E-value=0.00096  Score=55.52  Aligned_cols=59  Identities=27%  Similarity=0.260  Sum_probs=52.6

Q ss_pred             HHhhCCceEEEecccccch--hHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhcc
Q 027296          135 IQQQGPRAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAE  193 (225)
Q Consensus       135 iQq~g~rrIa~lGsRhvp~--~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae  193 (225)
                      +..-|.+.||++|+|+.+-  -+.+..+-+.+.|+..|..|+|=|+.|.=.||-|||+.+.
T Consensus        32 l~~~~~~~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g~~lVsGGg~GiM~aa~~gAl~~g   92 (217)
T 1wek_A           32 LSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEAG   92 (217)
T ss_dssp             HHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHTT
T ss_pred             HhhcCCCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHcC
Confidence            4555556899999999986  5678999999999999999999999999999999999983

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1

Probab=97.24  E-value=0.0005  Score=54.79  Aligned_cols=62  Identities=13%  Similarity=0.029  Sum_probs=53.0

Q ss_pred             ceEEEecccccch--hHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecC
Q 027296          141 RAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQ  204 (225)
Q Consensus       141 rrIa~lGsRhvp~--~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQ  204 (225)
                      ++||++|+|+.+-  -+.+..+-+.+.|+..|..|+|=|+.|.=.|+-|||+.+. -. ..=|+|.
T Consensus         2 ~~V~V~gs~~~~~~~~~~~~A~~lg~~La~~g~~lV~Ggg~GiM~aa~~gAl~~g-G~-tiGV~~~   65 (171)
T 1weh_A            2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGMEALARGVKAKG-GL-VVGVTAP   65 (171)
T ss_dssp             EEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCSSTHHHHHHHHHHHTT-CC-EEECCCG
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHcC-Cc-EEEEecc
Confidence            5799999999987  6788999999999999999999999999999999999983 22 3334455

>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}

Probab=97.09  E-value=0.0018  Score=56.87  Aligned_cols=79  Identities=18%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             CceEEEecccccchhHHHHHHHHHHHHHhhCCeeEecC-CCcchHHHHHhhhhccCCCeeEEEecCcccCC-ChhHHHHH
Q 027296          140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG-ASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELL  217 (225)
Q Consensus       140 ~rrIa~lGsRhvp~~hq~LIEllsyAlvl~gn~i~TSG-A~GtNaAvIRGalrae~p~lLTViLPQSL~rQ-p~Es~elL  217 (225)
                      .+.|||.|||++.---.+..+-++..|+ .| ..+.|| |-|+-+|+-||||.+..+  --.||+..|++- |+|.+++.
T Consensus       106 ~~~vaIVGsR~~s~yg~~~a~~l~~~La-~~-~~VVSGlA~GID~~AH~~aL~~~g~--TIaVl~~Gld~~YP~~n~~L~  181 (288)
T 3uqz_A          106 FPKVAVVGSRACSKQGAKSVEKVIQGLE-NE-LVIVSGLAKGIDTAAHMAALQNGGK--TIAVIGTGLDVFYPKANKRLQ  181 (288)
T ss_dssp             SCEEEEEECTTCCHHHHHHHHHHHHTTT-TC-SEEEECCCTTHHHHHHHHHHHHTCC--EEEECSSCTTCCSSGGGHHHH
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHHHHHh-hh-heEecCcccCHHHHHHHHHHhcCCC--EEEEecccccccCchhhHHHH
Confidence            3689999999999999999999999885 44 666676 689999999999998332  234799999874 77888887


Q ss_pred             HHhhh
Q 027296          218 AKVRV  222 (225)
Q Consensus       218 e~V~n  222 (225)
                      +++.+
T Consensus       182 ~~i~~  186 (288)
T 3uqz_A          182 DYIGN  186 (288)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            76643

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1

Probab=96.98  E-value=0.0022  Score=52.85  Aligned_cols=63  Identities=17%  Similarity=0.199  Sum_probs=52.5

Q ss_pred             CceEEEeccccc-ch----hHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecC
Q 027296          140 PRAIGFFGTRNM-GF----MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQ  204 (225)
Q Consensus       140 ~rrIa~lGsRhv-p~----~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQ  204 (225)
                      .++||++|+|+. .=    -..+..+-|.+.|+..|..|+|-|+-|.=.|+-|||+.+ .- ...-|||.
T Consensus        23 m~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~vVsGg~~GiM~aa~~gAl~~-GG-~~iGVlP~   90 (195)
T 1rcu_A           23 MKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREA-GG-TVVGILPD   90 (195)
T ss_dssp             CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHT-TC-CEEEEEST
T ss_pred             CCeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHc-CC-cEEEEeCC
Confidence            468999999875 22    567889999999999999999999999999999999998 33 34445787

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}

Probab=96.97  E-value=0.0028  Score=52.20  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=53.5

Q ss_pred             HHhhCCceEEEecc-cccchhHHHHHHHHHHHHHhhCCeeEecCCC-cchHHHHHhhhhccCCCeeEEEecCccc
Q 027296          135 IQQQGPRAIGFFGT-RNMGFMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (225)
Q Consensus       135 iQq~g~rrIa~lGs-Rhvp~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~  207 (225)
                      +-.+|.++||++|+ |...=-+.+.-+-+.+.|+..|+.|+|-|+. |.=.||-|||+.+ . -...=|+|+.|.
T Consensus         8 ~~~~~~~~I~Vfg~s~~~~~~~~~~A~~lg~~la~~g~~lv~GGG~~GlM~a~~~ga~~~-G-G~viGv~p~~l~   80 (189)
T 3sbx_A            8 SDEPGRWTVAVYCAAAPTHPELLELAGAVGAAIAARGWTLVWGGGHVSAMGAVSSAARAH-G-GWTVGVIPKMLV   80 (189)
T ss_dssp             -----CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHTT-T-CCEEEEEETTTT
T ss_pred             CCCCCCeEEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHc-C-CcEEEEcCchhh
Confidence            33567899999985 6444455678888999999999999999987 9999999999998 3 234456788764

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A

Probab=96.70  E-value=0.0049  Score=51.35  Aligned_cols=66  Identities=23%  Similarity=0.236  Sum_probs=52.5

Q ss_pred             CCceEEEe-cccccc-hhHHHHHHHHHHHHHhhCCeeEecCCC-cchHHHHHhhhhccCCCeeEEEecCcc
Q 027296          139 GPRAIGFF-GTRNMG-FMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSL  206 (225)
Q Consensus       139 g~rrIa~l-GsRhvp-~~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL  206 (225)
                      .-++||++ |+|... =-+.+.-+-+.+.|+..|+.|+|-|+. |.=.||-|||+++. - ...=|+|+.+
T Consensus         8 ~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~G-G-~~iGv~p~~l   76 (216)
T 1ydh_A            8 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGG-L-HVLGIIPKAL   76 (216)
T ss_dssp             SCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTT-C-CEEEEEEGGG
T ss_pred             CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcC-C-cEEEEechhc
Confidence            34689999 678753 456778888999999999999999997 99999999999983 3 3444567654

>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2

Probab=93.96  E-value=0.4  Score=38.55  Aligned_cols=80  Identities=19%  Similarity=0.184  Sum_probs=54.4

Q ss_pred             ceEEEecccccch------------hHHHHHHHHHHHHHhhC-CeeEecCCCcchHHHHHhhhhc--cCC-CeeEEEecC
Q 027296          141 RAIGFFGTRNMGF------------MHQELIEILSYALVITK-NHIYTSGASGTNAAVIRGALRA--ERP-DLLTVILPQ  204 (225)
Q Consensus       141 rrIa~lGsRhvp~------------~hq~LIEllsyAlvl~g-n~i~TSGA~GtNaAvIRGalra--e~p-~lLTViLPQ  204 (225)
                      ++|||-|-|..++            +-..|-+.|...+ ..| -+++|+||.|+=..+..-|+..  +-| =.|+|++|=
T Consensus         3 ~~i~vTGhR~~~l~if~~~~~~~~~ik~~L~~~l~~l~-~~G~~~~isgga~G~D~~aae~vl~lk~~y~~i~L~~v~Pf   81 (181)
T 2nx2_A            3 KVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFL-DEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPF   81 (181)
T ss_dssp             CEEEEEECCHHHHTCCSSCCHHHHHHHHHHHHHHHHHH-TTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESS
T ss_pred             eEEEEEeCCCccccCccccchHHHHHHHHHHHHHHHHH-hCCCcEEEECCCccHHHHHHHHHHHhccccCCceEEEEecc
Confidence            6899999998873            3333333333333 345 6999999999999998888773  346 568999993


Q ss_pred             ccc--CCChhHHHHHHHhh
Q 027296          205 SLK--KQPPESQELLAKVR  221 (225)
Q Consensus       205 SL~--rQp~Es~elLe~V~  221 (225)
                      .=-  +=+++.|+.+..++
T Consensus        82 ~~~~~~w~~~~~~~y~~ll  100 (181)
T 2nx2_A           82 YEQEKNWKEPNKEQYEAVL  100 (181)
T ss_dssp             BCTTTTSCHHHHHHHHHHH
T ss_pred             cchhhCCCHHHHHHHHHHH
Confidence            222  22667777766554

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A

Probab=93.80  E-value=0.23  Score=46.83  Aligned_cols=73  Identities=15%  Similarity=0.225  Sum_probs=57.0

Q ss_pred             hhCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhcc------CCCeeEEEecCcc-cCC
Q 027296          137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAE------RPDLLTVILPQSL-KKQ  209 (225)
Q Consensus       137 q~g~rrIa~lGsRhvp~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae------~p~lLTViLPQSL-~rQ  209 (225)
                      ...++.+.++||....=-+-+..+-+.++|+..|+.|+|-|+.|.=-|+.+||..+.      .-..+-| +|+.| ++|
T Consensus       144 ~r~~~IvV~cGSs~~~p~yye~A~eLGr~LA~~G~~LVtGGG~GLMeAa~aGA~~a~a~qr~aGG~vIGI-iP~~L~~~E  222 (462)
T 3gh1_A          144 GATPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGL-TEPSIIAAE  222 (462)
T ss_dssp             TCCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCTTCCEEEE-ECTTTTTTS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcHHHHHHHHHHHHHhccccccCCCeEEEE-ccchhhhhh
Confidence            356666679999887778888999999999999999999999999989999998873      3344444 46654 344


Q ss_pred             C
Q 027296          210 P  210 (225)
Q Consensus       210 p  210 (225)
                      .
T Consensus       223 ~  223 (462)
T 3gh1_A          223 P  223 (462)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}

Probab=93.03  E-value=0.4  Score=44.98  Aligned_cols=68  Identities=15%  Similarity=0.249  Sum_probs=51.7

Q ss_pred             hCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhc------cCCCeeEEEecCcc
Q 027296          138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA------ERPDLLTVILPQSL  206 (225)
Q Consensus       138 ~g~rrIa~lGsRhvp~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra------e~p~lLTViLPQSL  206 (225)
                      ..++.++++|+....=-.-+..+-+.+.|+..|..|+|-|+.|.=-|+++||..+      ..-.-+=| +|+.|
T Consensus       143 ~~~~ivVv~GSs~~~~~~Ye~A~eLGr~LA~~G~~LVtGGG~GlMEaa~aGA~~a~s~qr~~GG~vIGI-iP~~L  216 (460)
T 3bq9_A          143 EEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGL-TEPGI  216 (460)
T ss_dssp             CCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCSSCCEEEE-ECTTT
T ss_pred             CCCCEEEEEcCCCCCCHHHHHHHHHHHHHHHCCCEEEeCCcHHHhhHHHhhHHhhcccccCCCCEEEEE-eChhh
Confidence            4456788899977654445788889999999999999999999998888888877      23334444 46654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1weha_	171	Hypothetical protein TT1887 (TTHA0294) {Thermus th	97.13
d2q4oa1	183	Hypothetical protein At2g37210/T2N18.3 {Thale cres	96.93
d1t35a_	179	Hypothetical protein YvdD {Bacillus subtilis [TaxI	96.81
d1rcua_	170	Hypothetical protein TM1055 {Thermotoga maritima [	96.71
d1ydhb_	181	Hypothetical protein At5g11950 {Thale cress (Arabi	96.65
d1weka_	208	Hypothetical protein TT1465 (TTHA1644) {Thermus th	96.58
d2nx2a1	177	Hypothetical protein YpsA {Bacillus subtilis [TaxI	95.79
d1tv8a_	327	Molybdenum cofactor biosynthesis protein A MoaA {S	80.44

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.00049  Score=53.40  Aligned_cols=67  Identities=15%  Similarity=0.082  Sum_probs=56.5

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecCcccC
Q 027296          141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK  208 (225)
Q Consensus       141 rrIa~lGsRhvp~~--hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~r  208 (225)
                      |.||+||+...+--  +.+..+-+.++||..|+.|+|=|+.|.=.|+-|||.++ .-..+=|+.|+.+.+
T Consensus         2 k~V~Vfgss~~~~~~~~~~~a~~lG~~la~~g~~lv~GGg~G~M~a~a~ga~~~-gG~~iGv~~~~~l~~   70 (171)
T d1weha_           2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGMEALARGVKAK-GGLVVGVTAPAFFPE   70 (171)
T ss_dssp             EEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCSSTHHHHHHHHHHHT-TCCEEECCCGGGCTT
T ss_pred             CEEEEEecCCCCCCCHHHHHHHHHHHHHHHCCCceeeCcchHHHHHHHHHHHhc-cCceeeeeeccccch
Confidence            67999999987655  33667779999999999999999999999999999999 666777777877653

>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At2g37210/T2N18.3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.93  E-value=0.00099  Score=51.65  Aligned_cols=69  Identities=22%  Similarity=0.182  Sum_probs=53.1

Q ss_pred             hCCceEEEecccccchh--HHHHHHHHHHHHHhhCCeeEecCCC-cchHHHHHhhhhccCCCeeEEEecCcccC
Q 027296          138 QGPRAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLKK  208 (225)
Q Consensus       138 ~g~rrIa~lGsRhvp~~--hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~r  208 (225)
                      .--|+||+||+-..+--  +.+..+-|++.|+..|+.|+|.|+. |.=.|+-+||..+ . .....|.|..|..
T Consensus         4 ~~~k~v~Vf~gs~~~~~~~~~~~a~~lg~~la~~g~~lV~GGG~~GlMga~a~ga~~~-g-g~v~Gi~~~~l~~   75 (183)
T d2q4oa1           4 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDG-G-RHVIGIIPKTLMP   75 (183)
T ss_dssp             CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHT-T-CCEEEEEETTCC-
T ss_pred             cCCceEEEECcCCCCcCCHHHHHHHHHHHHHHHcCCeEEECCCCcchHHHHHHHHHhc-C-Ccccccccccccc
Confidence            34589999986555443  4677788999999999999999986 9999999999988 4 4455666666643

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

Probab=96.81  E-value=0.00092  Score=51.42  Aligned_cols=65  Identities=14%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             ceEEEecccccch--hHHHHHHHHHHHHHhhCCeeEecCCC-cchHHHHHhhhhccCCCeeEEEecCccc
Q 027296          141 RAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (225)
Q Consensus       141 rrIa~lGsRhvp~--~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL~  207 (225)
                      |+||+||+-..+.  -+.+..+-|++.|+..|+.|+|-|+. |.=.|+-+||..+ .-. .+-|.|..|.
T Consensus         2 k~v~VF~~s~~~~~~~~~~~a~~lg~~la~~g~~lv~GGG~~GlMga~a~ga~~~-gg~-v~gv~~~~l~   69 (179)
T d1t35a_           2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMEN-GGT-AIGVMPSGLF   69 (179)
T ss_dssp             CEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTT-TCC-EEEEEETTCC
T ss_pred             CEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHhcchhhc-CCc-eeccccchhh
Confidence            7899998655443  34688889999999999999999974 9999999999988 443 4445666553

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

Probab=96.71  E-value=0.0035  Score=47.80  Aligned_cols=63  Identities=17%  Similarity=0.246  Sum_probs=50.2

Q ss_pred             ceEEEecc----cccch-hHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecCc
Q 027296          141 RAIGFFGT----RNMGF-MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQS  205 (225)
Q Consensus       141 rrIa~lGs----Rhvp~-~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQS  205 (225)
                      |||+++|+    ..-|. =..++-+-|.+.||..|+.|||-|..|.=.||-|||..+ .-..+ =|||..
T Consensus         2 k~v~v~~~~~~~~~~p~~~~~~~a~~lG~~la~~g~~V~~GG~~GlM~ava~ga~~~-gg~vi-GilP~~   69 (170)
T d1rcua_           2 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREA-GGTVV-GILPDE   69 (170)
T ss_dssp             CEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHT-TCCEE-EEESTT
T ss_pred             ceEEEEEEecCCCCCcchHHHHHHHHHHHHHHHCCCEEECCCccCHHHHHHHHHHhc-CCccc-cccchh
Confidence            78888876    12333 478888889999999999999999999999999999998 44444 357854

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.65  E-value=0.0018  Score=50.00  Aligned_cols=65  Identities=23%  Similarity=0.301  Sum_probs=50.1

Q ss_pred             CceEEEecccccch--hHHHHHHHHHHHHHhhCCeeEecCCC-cchHHHHHhhhhccCCCeeEEEecCcc
Q 027296          140 PRAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSL  206 (225)
Q Consensus       140 ~rrIa~lGsRhvp~--~hq~LIEllsyAlvl~gn~i~TSGA~-GtNaAvIRGalrae~p~lLTViLPQSL  206 (225)
                      -|+||+||+-+.+-  -+.+..+-|++.|+..|+.++|.|+. |.=.|+-|||..+ .-..+=| .|+.|
T Consensus         2 ~k~v~Vf~gs~~~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~-gg~viGv-~~~~l   69 (181)
T d1ydhb_           2 FRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEG-GLHVLGI-IPKAL   69 (181)
T ss_dssp             CSEEEEECCSCCCSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHT-TCCEEEE-EEGGG
T ss_pred             CcEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhc-CCccccc-chhhh
Confidence            37999998665543  33567778899999999999999876 9999999999998 5444444 44443

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

Probab=96.58  E-value=0.0065  Score=48.17  Aligned_cols=77  Identities=23%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             HHHHhhCCceEEEecccccchh--HHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhccCCCeeEEEecCcccCCC
Q 027296          133 LAIQQQGPRAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQP  210 (225)
Q Consensus       133 aaiQq~g~rrIa~lGsRhvp~~--hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~rQp  210 (225)
                      .++-..+.+.||+||+...+--  +.+..+-|.+.|+..|+.|+|=|+.|.=-||-|||+.+ .-... =|.|..+..++
T Consensus        26 ~~~~~~~~~~V~Vfgsa~~~~~~~~y~~A~~LG~~La~~g~~lv~GGg~GlMgava~ga~~~-gG~vi-Gi~~~~~~~~~  103 (208)
T d1weka_          26 ETLSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEA-GGVSV-GLNIELPHEQK  103 (208)
T ss_dssp             HHHHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHT-TCCEE-EEEECCTTCCC
T ss_pred             HHHhhcCCCeEEEECCCCCCCcChHHHHHHHHHHHHHhCcceEEeCCCchHHHHHHhhhhhc-CCcee-ccccccccccc
Confidence            3466667889999999987543  23667789999999999999999999999999999999 44333 35566666554


Q ss_pred             h
Q 027296          211 P  211 (225)
Q Consensus       211 ~  211 (225)
                      +
T Consensus       104 ~  104 (208)
T d1weka_         104 P  104 (208)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: YpsA-like
domain: Hypothetical protein YpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.79  E-value=0.026  Score=44.01  Aligned_cols=81  Identities=22%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             ceEEEecccccc------------hhHHHHHHHHHHHHHhhCCeeEecCCCcchHHHHHhhhhc--cCCC-eeEEEec--
Q 027296          141 RAIGFFGTRNMG------------FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA--ERPD-LLTVILP--  203 (225)
Q Consensus       141 rrIa~lGsRhvp------------~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra--e~p~-lLTViLP--  203 (225)
                      |+|||-|-|...            ++-..|-+.+...+...=..+||+||-|+---+..-||..  +-|+ .|.|+||  
T Consensus         2 k~i~vTGhR~~elg~f~~~~p~~~~Ik~~l~~~l~~l~e~G~~~~i~g~alG~D~~aAevvl~lk~~yp~ikL~~~lPf~   81 (177)
T d2nx2a1           2 KVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPFY   81 (177)
T ss_dssp             CEEEEEECCHHHHTCCSSCCHHHHHHHHHHHHHHHHHHTTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESSB
T ss_pred             cEEEEecCCCcccCCCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHHHHhhhCCCceEEEEeccc
Confidence            688898988432            3444555666655555667899999999987776666654  4465 5899999  


Q ss_pred             -CcccCCChhHHHHHHHhhh
Q 027296          204 -QSLKKQPPESQELLAKVRV  222 (225)
Q Consensus       204 -QSL~rQp~Es~elLe~V~n  222 (225)
                       |+ ++-+.+.|+.+.+++.
T Consensus        82 ~~~-~~w~e~~~~~y~~ll~  100 (177)
T d2nx2a1          82 EQE-KNWKEPNKEQYEAVLA  100 (177)
T ss_dssp             CTT-TTSCHHHHHHHHHHHH
T ss_pred             ccc-cCCCHHHHHHHHHHHh
Confidence             87 6889999998887654

>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.44  E-value=2.8  Score=31.19  Aligned_cols=65  Identities=15%  Similarity=0.046  Sum_probs=46.7

Q ss_pred             HHhhCCceEEEecccccchhHHHHHHHHHHHHHhhCCe--eEecCCCcchHHHHHhhhhccCCCeeEEEec
Q 027296          135 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNH--IYTSGASGTNAAVIRGALRAERPDLLTVILP  203 (225)
Q Consensus       135 iQq~g~rrIa~lGsRhvp~~hq~LIEllsyAlvl~gn~--i~TSGA~GtNaAvIRGalrae~p~lLTViLP  203 (225)
                      +.+.|...|.|.|.-  |++|..++|++.++....+..  ++|.|..= +-..++-...+ ..+.+.|-|.
T Consensus        60 ~~~~g~~~v~~~GGE--p~l~~~~~e~i~~~~~~~~~~~~~~Tng~ll-~~~~~~~l~~~-g~~~i~iSld  126 (327)
T d1tv8a_          60 YAELGVKKIRITGGE--PLMRRDLDVLIAKLNQIDGIEDIGLTTNGLL-LKKHGQKLYDA-GLRRINVSLD  126 (327)
T ss_dssp             HHHTTCCEEEEESSC--GGGSTTHHHHHHHHTTCTTCCEEEEEECSTT-HHHHHHHHHHH-TCCEEEEECC
T ss_pred             HHHcCCeEEEeCCCc--ccccccHHHHHHHHhhhcccccccccccccc-chhHHHHHHHc-CCCEEeeecc
Confidence            456699999988874  999999999999988777654  34555554 44555555555 7777777653