Citrus Sinensis ID: 027299

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK
Secondary Structure (PSIPRED)
ccccccEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccEEEEEEcccccccccccccEEEccccccccHHHHHHcccccccccccccccccccccccccccEEEEccccccccccccccHHHHcHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGLASVIysgvqaphkfdslllrfsptstsqvpkltsllhfcnsqaptfysvshnrrgqyspllacakgteqeddlstsevgrsssqshendntshspttvddaerqiegresytsSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK
Flexible Loop (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVgrsssqshendntshspttvddaerqIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK
Low Complexity Region (SEG)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK
Disordered region (IsUnstruct)
*****VIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLAC**************************************************SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFS***
Disordered Region (DISOPRED)
***ASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSH*****************QEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK
Disordered Region (DISEMBL)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAK************************************ERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK
Disordered Region (DISPRO)
*GLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQ***LSTSEVGRSS*****NDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
P96554	319	Uncharacterized membrane	yes	no	0.462	0.326	0.432	1e-17
Q52356	346	Tellurium resistance prot	N/A	no	0.488	0.317	0.433	2e-14
Q92GA4	301	Uncharacterized membrane	yes	no	0.502	0.375	0.362	2e-14
Q8Z3L5	322	Inner membrane protein al	N/A	no	0.368	0.257	0.457	4e-14
Q8ZLX2	322	Inner membrane protein al	yes	no	0.368	0.257	0.457	4e-14
Q8FDE1	321	Inner membrane protein al	yes	no	0.368	0.258	0.421	1e-13
Q8XAJ0	321	Inner membrane protein al	N/A	no	0.368	0.258	0.421	1e-13
P42601	321	Inner membrane protein al	N/A	no	0.368	0.258	0.421	1e-13
Q83Q35	320	Inner membrane protein al	yes	no	0.368	0.259	0.421	1e-13
Q4UK32	301	Uncharacterized membrane	yes	no	0.48	0.358	0.370	2e-13

>sp|P96554|Y319_MYXXA Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%)

Query: 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNR 181
           A  VS A+ FG GV +  G     +F  GY++E+SLSVDN+FVFV+IF   ++P +YQ+R
Sbjct: 48  ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQHR 107

Query: 182 VLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           VL +GI  A+  R  +I  G A L RF  +  V  G L+ +  K
Sbjct: 108 VLFWGILSALALRAIMIFAGVAMLARFHWLIYVFGGFLIITGVK 151

Myxococcus xanthus (taxid: 34)

>sp|Q52356|TERC_SERMA Tellurium resistance protein TerC OS=Serratia marcescens GN=terC PE=3 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 71/120 (59%), Gaps = 10/120 (8%)

Query: 111 RESYTSSVKTVA----FCVSTAVAFGLGVGFI---EGASKASEFFAGYILEQSLSVDNLF 163
           R+    S+K+ A    F V  A+AF    GF+    GA  AS F  GY LE+ LSVDNLF
Sbjct: 32  RDDKPISLKSAALWSVFWVVVAMAFA---GFLYIHHGAEVASLFVTGYALEKVLSVDNLF 88

Query: 164 VFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSS 223
           V + IF +F VP  Y++RVL +GI GAIVFR   + +GT+ L     V +V A I+ +++
Sbjct: 89  VMMAIFSWFAVPDRYRHRVLYWGIIGAIVFRGIFVAIGTSLLSLGPYVEVVFAIIVAWTA 148

Could conceivably alter the intracellular level of tellurium in a manner leading to resistance. Alternatively its presence in the membrane may provide a barrier to entry of the tellurium ions.

Serratia marcescens (taxid: 615)

>sp|Q92GA4|Y1219_RICCN Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC1219 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 69/113 (61%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  SV    F +  A  FG+ V +  GA  A E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKESVLFSLFYLVIACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           K+P  YQ+RVL +GI G I+FR  +I  G   + +F  +  + A IL+ +  K
Sbjct: 89  KIPWQYQHRVLFFGIIGVIIFRAVMIYGGIILINKFAWLLYIFAVILIATGIK 141

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

>sp|Q8Z3L5|ALX_SALTI Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 54/83 (65%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFK 225
             + +FE +  V    LLF+  K
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVK 157

Salmonella typhi (taxid: 90370)

>sp|Q8ZLX2|ALX_SALTY Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alx PE=3 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 54/83 (65%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  GT
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGT 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFK 225
             + +FE +  V    LLF+  K
Sbjct: 135 WLITQFEWLLYVFGAFLLFTGVK 157

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q8FDE1|ALX_ECOL6 Inner membrane protein alx OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=alx PE=3 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 54/83 (65%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFK 225
             + +F+ +  +    LLF+  K
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVK 157

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|Q8XAJ0|ALX_ECO57 Inner membrane protein alx OS=Escherichia coli O157:H7 GN=alx PE=3 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 54/83 (65%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFK 225
             + +F+ +  +    LLF+  K
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVK 157

Escherichia coli O157:H7 (taxid: 83334)

>sp|P42601|ALX_ECOLI Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx PE=1 SV=2

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 54/83 (65%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFK 225
             + +F+ +  +    LLF+  K
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVK 157

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q83Q35|ALX_SHIFL Inner membrane protein alx OS=Shigella flexneri GN=alx PE=3 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 54/83 (65%)

Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
           +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct: 75  QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query: 203 ATLQRFEAVNLVLAGILLFSSFK 225
             + +F+ +  +    LLF+  K
Sbjct: 135 WLISQFDWILYIFGAFLLFTGVK 157

Shigella flexneri (taxid: 623)

>sp|Q4UK32|Y1252_RICFE Uncharacterized membrane protein RF_1252 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_1252 PE=3 SV=2

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 66/108 (61%)

Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
           S+  SV    F    A  FG+   +  GA  A E++  +++E+++S+DN+FV  +IF++F
Sbjct: 29  SFKESVLFSLFYFVIACLFGIYFYYNTGAEHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88

Query: 173 KVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILL 220
           K+P  YQ+RVL +GI G I+FR  +I  GT  + +F  +  + A IL+
Sbjct: 89  KIPGKYQHRVLFFGIIGVIIFRAIMIYGGTILINKFAWLLYIFAVILI 136

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
224068600	372	predicted protein [Populus trichocarpa]	0.937	0.567	0.618	3e-66
255568464	327	Protein alx, putative [Ricinus communis]	0.853	0.587	0.581	6e-56
449448697	362	PREDICTED: uncharacterized membrane prot	0.866	0.538	0.532	3e-54
388522347	261	unknown [Medicago truncatula]	0.897	0.773	0.566	7e-54
356536907	363	PREDICTED: uncharacterized membrane prot	0.906	0.561	0.575	1e-53
225439789	389	PREDICTED: uncharacterized membrane prot	0.915	0.529	0.554	6e-53
356548192	352	PREDICTED: uncharacterized membrane prot	0.857	0.548	0.553	9e-50
297807259	374	PDE149 [Arabidopsis lyrata subsp. lyrata	0.942	0.566	0.555	1e-49
297741505	365	unnamed protein product [Vitis vinifera]	0.817	0.504	0.538	4e-49
21592518	384	transmembrane transport protein-like pro	0.964	0.565	0.521	2e-48

>gi|224068600|ref|XP_002326155.1| predicted protein [Populus trichocarpa] gi|222833348|gb|EEE71825.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/228 (61%), Positives = 170/228 (74%), Gaps = 17/228 (7%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           M L SVI++    P     L L+ SP +       T  + F +   P+F SV   RRGQ 
Sbjct: 1   MRLTSVIHNNSIIP-----LSLKVSPAN------YTYSVQFSHPHFPSFNSVISKRRGQN 49

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHENDN---TSHSPTTVDDAERQIEGRESYTSS 117
           SP+ +CA+GTEQEDDLS SE  ++SSQ+ ++ +   TS +P +VD AE +++G  +Y +S
Sbjct: 50  SPI-SCARGTEQEDDLSPSEAVKTSSQTRDDVSKFITSTAPPSVDKAEEKVKG--NYKTS 106

Query: 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVM 177
           +KTVA CV TAVAFG G+G  +G  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP+M
Sbjct: 107 IKTVALCVCTAVAFGFGIGLKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLM 166

Query: 178 YQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           YQNRVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL LA ILL+SSFK
Sbjct: 167 YQNRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLFLATILLYSSFK 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568464|ref|XP_002525206.1| Protein alx, putative [Ricinus communis] gi|223535503|gb|EEF37172.1| Protein alx, putative [Ricinus communis]

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/227 (58%), Positives = 153/227 (67%), Gaps = 35/227 (15%)

Query: 1   MGLASVIYS--GVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRG 58
           M LASVI++   +Q P    SL LR SP      PK +   HF         S+ H  R 
Sbjct: 1   MSLASVIHTINTIQPPL---SLTLRVSP------PKCSPRFHFSPPHFTPLLSLPH--RL 49

Query: 59  QYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSV 118
            Y   +AC+ G +Q+ DLSTSE                +P +VD    + E   +YT+SV
Sbjct: 50  PYP--IACSGGAQQDPDLSTSE----------------APHSVD----KPEAHGNYTTSV 87

Query: 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMY 178
           KTVAFCV  AVAFG+G+GF +G  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP+MY
Sbjct: 88  KTVAFCVCAAVAFGIGIGFKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLMY 147

Query: 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           QNRVLSYGIAGAI+FRLSLILLG+ATLQRFEAVNL LA ILL+SS K
Sbjct: 148 QNRVLSYGIAGAIIFRLSLILLGSATLQRFEAVNLFLAAILLYSSVK 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448697|ref|XP_004142102.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Cucumis sativus]

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 149/231 (64%), Gaps = 36/231 (15%)

Query: 3   LASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHF--------CNSQAPTFYSVSH 54
           +AS+I++G+Q   K DS             PK++S LHF         ++  P F  V  
Sbjct: 1   MASIIHNGLQISSKLDS-----------PWPKVSSHLHFHPRAWVEAVHNHVPQFSPVIL 49

Query: 55  NRRGQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESY 114
           N R     L+ C+   E+E D ST+E  R+SS                     IEG ES 
Sbjct: 50  NCRPSPRSLVRCSSRIEREGDPSTAEANRTSS-----------------VRGTIEGSESK 92

Query: 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKV 174
            SS++ VA CV+TAVAFG+GVG  +G  KASEFFAGY+LEQSLSVDNLFVFVLIFKYFKV
Sbjct: 93  VSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKV 152

Query: 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           P  YQNRVL+YGI+GAIVFRL++ILLG ATLQRFEAVNL+LA ILLFSSF+
Sbjct: 153 PTEYQNRVLTYGISGAIVFRLTIILLGAATLQRFEAVNLLLAAILLFSSFQ 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522347|gb|AFK49235.1| unknown [Medicago truncatula]

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 128/226 (56%), Positives = 151/226 (66%), Gaps = 24/226 (10%)

Query: 1   MGLASVIYSGVQAP-HKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQ 59
           M LASV+++G+Q P +  D + +R S + TS        L F +    +F SV H  R  
Sbjct: 1   MSLASVVHNGIQTPLNHTDLIRIRASHSKTST-------LQFLHRPISSFSSVYHLHRPL 53

Query: 60  YSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIEGRESYTSSVK 119
             PL  C+K   Q     TS+V R ++Q              DD     E  ES +S+V+
Sbjct: 54  RLPL-PCSKPIRQVHPFHTSDVKRITAQR-------------DDEISSTE--ESQSSAVR 97

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V  AVAFG+GVGF EG  KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV+YQ
Sbjct: 98  TVALWVCAAVAFGVGVGFTEGYEKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVLYQ 157

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           NRVLSYGIAGA+VFRL +ILLGTAT+QRFEAVNL+LA ILLFSSFK
Sbjct: 158 NRVLSYGIAGAVVFRLIIILLGTATIQRFEAVNLLLAAILLFSSFK 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536907|ref|XP_003536974.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 155/226 (68%), Gaps = 22/226 (9%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV+++GV+ P   + +    +P      P   S LH   S   +F SV H R    
Sbjct: 1   MGLASVVHNGVRIPFNLEHI---HTP------PFRCSALHHPIS---SFCSVYHYRPPHR 48

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++     +    SEV R S+Q +++      SPT      ++  G E Y+SSV+
Sbjct: 49  FPLL-CSRRIGHHN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEDYSSSVR 99

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 100 TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVAYQ 159

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           NRVLSYGIAGA+VFRL+LIL+GTATLQRFEAVNL+LA ILLFSSFK
Sbjct: 160 NRVLSYGIAGAVVFRLTLILIGTATLQRFEAVNLLLAAILLFSSFK 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439789|ref|XP_002276398.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Vitis vinifera]

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 132/238 (55%), Positives = 155/238 (65%), Gaps = 32/238 (13%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLL----------HFCNSQAPTFY 50
           IY GV+ P KFDS       TSTS      Q  K T+            HF     P   
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHF-----PPLS 54

Query: 51  SVSHNRRGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTS--HSPTTVDDAERQ 107
           +V +    + SPL AC++ T+Q ED LSTSE  R S+      N +  H+  +  + E  
Sbjct: 55  AVRNAGGARCSPL-ACSRRTQQGEDGLSTSEGERISAPYDGLSNVAVPHNCISAGNPEEI 113

Query: 108 IEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVL 167
            +G E+Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVL
Sbjct: 114 TQGPETYVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVL 173

Query: 168 IFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           IFKYF+VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFK
Sbjct: 174 IFKYFQVPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548192|ref|XP_003542487.1| PREDICTED: uncharacterized membrane protein STKORF319-like [Glycine max]

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 150/226 (66%), Gaps = 33/226 (14%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRRGQY 60
           MGLASV++  + AP                  P   S+LH   S   +F SV H R  + 
Sbjct: 1   MGLASVVH--IHAP------------------PFRCSVLHHPIS---SFCSVYHYRPPRR 37

Query: 61  SPLLACAKGTEQEDDLSTSEVGRSSSQSHEN-DNTSHSPTTVDDAERQIEGRESYTSSVK 119
            PLL C++    ++    SEV R S+Q +++      SPT      ++  G E Y SSV+
Sbjct: 38  FPLL-CSRRIGHDN--YASEVKRISAQQNDDIGKVEKSPT------QESLGNEGYNSSVR 88

Query: 120 TVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
           TVA  V TAVAFG+G+GF EG  KASEFFAGYILEQSLSVDNLFVFVLIF YFKVPV YQ
Sbjct: 89  TVALWVCTAVAFGVGLGFKEGFDKASEFFAGYILEQSLSVDNLFVFVLIFNYFKVPVTYQ 148

Query: 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           NRVLSYGIAGA+VFRL++IL+GTATLQRFEAVNL+LA ILL+SS K
Sbjct: 149 NRVLSYGIAGAVVFRLTIILIGTATLQRFEAVNLLLAAILLYSSSK 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807259|ref|XP_002871513.1| PDE149 [Arabidopsis lyrata subsp. lyrata] gi|297317350|gb|EFH47772.1| PDE149 [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/227 (55%), Positives = 156/227 (68%), Gaps = 15/227 (6%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLRFSPTSTSQVPKLTSLLHFCNSQAPTFYSVSH-NRRGQ 59
           M LASVI+ G+ AP K D + L     +   VP       +  S+   F  VS  NRR  
Sbjct: 1   MSLASVIHHGIFAPAKSDRIFL-----TIPVVPPDFRARGWTESR---FSLVSAANRRLS 52

Query: 60  YSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTSSV 118
           + P +AC++  +QEDD  + E+       H+ND  + S ++VD       +  E+Y +S 
Sbjct: 53  HLPPIACSREIDQEDDKESREL-----LPHKNDENASSSSSVDSGGLNDYQQEETYKTSF 107

Query: 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMY 178
           KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP MY
Sbjct: 108 KTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPPMY 167

Query: 179 QNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           QN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFK
Sbjct: 168 QNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFK 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741505|emb|CBI32637.3| unnamed protein product [Vitis vinifera]

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/236 (53%), Positives = 146/236 (61%), Gaps = 52/236 (22%)

Query: 7   IYSGVQAPHKFDSLLLRFSPTSTS------QVPKLTSLL----------HFCNSQAPTFY 50
           IY GV+ P KFDS       TSTS      Q  K T+            HF     P   
Sbjct: 7   IYYGVRTPLKFDS-------TSTSTRVFSFQALKWTTTRSTTRLRFTFPHF-----PPLS 54

Query: 51  SVSHNRRGQYSPLLACAKGTEQ-EDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAERQIE 109
           +V +    + SPL AC++ T+Q ED LSTS                       + E   +
Sbjct: 55  AVRNAGGARCSPL-ACSRRTQQGEDGLSTS----------------------GNPEEITQ 91

Query: 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIF 169
           G E+Y SS++TVA  V  AV FG+GVGF +G  KASEFFAGY+LEQSLSVDNLFVFVLIF
Sbjct: 92  GPETYVSSIRTVALWVCMAVIFGVGVGFKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIF 151

Query: 170 KYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           KYF+VP MYQ RVLSYGIAGAI+FRLSLILLGTATLQRFEAVNL+ A ILLFSSFK
Sbjct: 152 KYFQVPTMYQGRVLSYGIAGAIIFRLSLILLGTATLQRFEAVNLLFAAILLFSSFK 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592518|gb|AAM64468.1| transmembrane transport protein-like protein [Arabidopsis thaliana]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/232 (52%), Positives = 155/232 (66%), Gaps = 15/232 (6%)

Query: 1   MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
           M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct: 1   MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query: 58  GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE----RQIEGRES 113
             + P +AC++G +QED+    E        H+ND  + +  +    +    +  +  E+
Sbjct: 57  LSHLPPIACSRGIDQEDE----EKESRELLPHKNDENATTSRSSSSVDSGGLKDYQQEET 112

Query: 114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173
           Y +S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFK
Sbjct: 113 YKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFK 172

Query: 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
           VP+MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFK
Sbjct: 173 VPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFK 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2177053	384	PDE149 "PIGMENT DEFECTIVE 149"	0.977	0.572	0.545	2.6e-54
UNIPROTKB|Q74EV4	311	GSU0855 "Membrane protein, Ter	0.511	0.369	0.445	1.3e-20
TIGR_CMR|GSU_0855	311	GSU_0855 "membrane protein, Te	0.511	0.369	0.445	1.3e-20
UNIPROTKB|Q74CV1	314	GSU1570 "Membrane protein, Ter	0.511	0.366	0.408	2.5e-19
TIGR_CMR|GSU_1570	314	GSU_1570 "membrane protein, Te	0.511	0.366	0.408	2.5e-19
UNIPROTKB|Q8E9J8	325	SO_4279 "Tellurium ion resista	0.48	0.332	0.409	3.7e-17
UNIPROTKB|Q8EG61	325	SO_1747 "Tellurium ion resista	0.48	0.332	0.409	3.7e-17
TIGR_CMR|SO_1747	325	SO_1747 "membrane protein, put	0.48	0.332	0.409	3.7e-17
TIGR_CMR|SO_4279	325	SO_4279 "membrane protein, put	0.48	0.332	0.409	3.7e-17
UNIPROTKB|P42601	321	alx "predicted membrane-bound	0.368	0.258	0.421	1.3e-14

TAIR|locus:2177053 PDE149 "PIGMENT DEFECTIVE 149" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 125/229 (54%), Positives = 158/229 (68%)

Query:     1 MGLASVIYSGVQAPHKFDSLLLR---FSPTSTSQVPKLTSLLHFCNSQAPTFYSVSHNRR 57
             M LASVI+ G+  P K D + L    F P   ++    +      N   P+  S + NRR
Sbjct:     1 MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLLIN---PSLASAA-NRR 56

Query:    58 GQYSPLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSHSPTTVDDAE-RQIEGRESYTS 116
               + P +AC++G +QED+   S       ++ EN  TS S ++VD    +  +  E+Y +
Sbjct:    57 LSHLPPIACSRGIDQEDEEKESRE-LLPHKNDENATTSRSSSSVDSGGLKDYQQEETYKT 115

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S KTVA CV TAVAFG+G+G  EG  KASEFFAGYILEQSLSVDNLFVFVL+FKYFKVP+
Sbjct:   116 SFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVPL 175

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
             MYQN+VL+YGIAGAIVFR +LILLGTATLQ+FEAVNL+LA +LL+SSFK
Sbjct:   176 MYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFK 224

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|Q74EV4 GSU0855 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 53/119 (44%), Positives = 78/119 (65%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFK 146

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0855 GSU_0855 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 53/119 (44%), Positives = 78/119 (65%)

Query:   107 QIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFV 166
             +I+ RE+ T    T+ + VS A++F   + F  G +KA EFF GY++EQSLSVDNLFVF+
Sbjct:    32 EIKFREALTW---TLVW-VSLALSFNAWIYFEMGPTKAMEFFTGYLIEQSLSVDNLFVFI 87

Query:   167 LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
             +IF YF +  ++Q ++L +GI GA+V R   IL G   ++RF  +  V  GIL+ + FK
Sbjct:    88 MIFTYFHITKVHQPKILKWGIIGALVLRAIFILAGIELIERFHWMIYVFGGILVVTGFK 146

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q74CV1 GSU1570 "Membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/115 (40%), Positives = 72/115 (62%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASK 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1570 GSU_1570 "membrane protein, TerC family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/115 (40%), Positives = 72/115 (62%)

Query:   111 RESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170
             R S+  ++      V  A+AF +G+ F+ G  KA EF  GY++E+SLSVDNLFVF++IF 
Sbjct:    31 RVSFKEALGWSILWVGLALAFNVGIYFVLGQQKALEFLTGYLIEKSLSVDNLFVFIMIFT 90

Query:   171 YFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
              F V    Q RVL +GI GA++ R+  I LG   L+RF+ +  +   +L++++ K
Sbjct:    91 VFGVRGELQARVLKWGILGALIMRVVFIFLGAELLERFQWLFYIFGAVLIYTASK 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q8E9J8 SO_4279 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 211 (79.3 bits), Expect = 3.7e-17, P = 3.7e-17
 Identities = 45/110 (40%), Positives = 71/110 (64%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFK 225
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIK 154

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EG61 SO_1747 "Tellurium ion resistance family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 211 (79.3 bits), Expect = 3.7e-17, P = 3.7e-17
 Identities = 45/110 (40%), Positives = 71/110 (64%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFK 225
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIK 154

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1747 SO_1747 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 211 (79.3 bits), Expect = 3.7e-17, P = 3.7e-17
 Identities = 45/110 (40%), Positives = 71/110 (64%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFK 225
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIK 154

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_4279 SO_4279 "membrane protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 211 (79.3 bits), Expect = 3.7e-17, P = 3.7e-17
 Identities = 45/110 (40%), Positives = 71/110 (64%)

Query:   117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
             S+K  AF +   + FG  + + +G++   E+  GY++E+SLS+DN+FV  LIF    +P 
Sbjct:    46 SLKLSAFYICMGLLFGAWLWWYKGSTAGMEYLTGYLIEKSLSMDNVFVIALIFSSLGIPR 105

Query:   177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI-LLFSSFK 225
             +YQ+RVL +GI G IV R  +I LG A + +++ V LVL G+ L+F+  K
Sbjct:   106 LYQHRVLFWGIMGVIVLRAIMIGLGAALVAQYQGV-LVLFGLFLIFTGIK 154

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|P42601 alx "predicted membrane-bound redox modulator that is induced by high pH" [Escherichia coli K-12 (taxid:83333)]

 Score = 189 (71.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 35/83 (42%), Positives = 54/83 (65%)

Query:   143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 202
             +A  F  GY++E+SL+VDN+FV++++F YF VP   Q RVL YG+ GAIV R  +I  G+
Sbjct:    75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGS 134

Query:   203 ATLQRFEAVNLVLAGILLFSSFK 225
               + +F+ +  +    LLF+  K
Sbjct:   135 WLISQFDWILYIFGAFLLFTGVK 157

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
TIGR03718	302	TIGR03718, R_switched_Alx, integral membrane prote	1e-38
pfam03741	184	pfam03741, TerC, Integral membrane protein TerC fa	3e-23
COG0861	254	COG0861, TerC, Membrane protein TerC, possibly inv	4e-15
TIGR03716	215	TIGR03716, R_switched_YkoY, integral membrane prot	2e-04

>gnl|CDD|234327 TIGR03718, R_switched_Alx, integral membrane protein, TerC family

 Score =  134 bits (341), Expect = 1e-38
 Identities = 52/109 (47%), Positives = 68/109 (62%)

Query: 117 SVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPV 176
           ++   A  VS A+ FG GV F  G   A EF  GY++E+SLSVDNLFVF+LIF YF VP 
Sbjct: 35  ALLWSAVWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPR 94

Query: 177 MYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225
            YQ+RVL +GI GA+V R   I  G A +++F  V  +    LL++  K
Sbjct: 95  EYQHRVLFWGILGALVLRAIFIAAGAALIEQFHWVLYIFGAFLLYTGIK 143

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader. Length = 302

>gnl|CDD|217707 pfam03741, TerC, Integral membrane protein TerC family

 Score = 91.8 bits (229), Expect = 3e-23
 Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207
              Y+LE SLSVDN FV  LIF+  K+P   Q + L +GI GA+V R+ LILLG+A L+ 
Sbjct: 1   LTLYLLEISLSVDNAFVIALIFR--KLPPEQQKKALFWGIIGALVLRIILILLGSALLEL 58

Query: 208 FEAVNLVLAGILLFSSFK 225
           F+ + L+    LL+++ K
Sbjct: 59  FDWILLIGGAFLLYTAIK 76

This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Length = 184

>gnl|CDD|223930 COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

 Score = 71.5 bits (176), Expect = 4e-15
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205
                 +LE  L +DN  V  ++      P   + + L  G+AGA+V R+ L+   +  L
Sbjct: 19  ALLTLILLEIVLGIDNAIVIAILASKL--PPKQRKKALFIGLAGALVLRIILLASISWLL 76

Query: 206 QRFEAVNLVLAGILLFSSFK 225
              + +  +    LL+   K
Sbjct: 77  TLTQPLLYIFGLYLLWRDIK 96

Length = 254

>gnl|CDD|234326 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 211
           ILE  LS DN  V  ++ K+  +P   + + L YG+ GA VFR   + L +  L +F  +
Sbjct: 2   ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLAS-FLIKFWWI 58

Query: 212 NLVLAGILLFSSFK 225
             + A  LL+ + K
Sbjct: 59  KAIGALYLLYLAIK 72

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed. Length = 215

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	100.0
PF03741	183	TerC: Integral membrane protein TerC family; Inter	99.89
COG0861	254	TerC Membrane protein TerC, possibly involved in t	99.89
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	99.85
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	99.74
PRK14013	338	hypothetical protein; Provisional	99.07
COG2899	346	Uncharacterized protein conserved in bacteria [Fun	98.12
PF03741	183	TerC: Integral membrane protein TerC family; Inter	96.7
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	95.91
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	95.91
COG0861	254	TerC Membrane protein TerC, possibly involved in t	95.68
PRK10995	221	inner membrane protein; Provisional	94.73
PF04332	294	DUF475: Protein of unknown function (DUF475); Inte	93.91
PRK09304	207	arginine exporter protein; Provisional	93.18
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	92.87
PF01914	203	MarC: MarC family integral membrane protein; Inter	92.26
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	91.45
PRK11111	214	hypothetical protein; Provisional	91.21
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	91.2
PRK10739	197	putative antibiotic transporter; Provisional	91.09
TIGR00948	177	2a75 L-lysine exporter.	91.05
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	89.96
PRK10229	206	threonine efflux system; Provisional	89.41
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	85.43
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	85.32
PRK10958	212	leucine export protein LeuE; Provisional	84.9
PRK11469	188	hypothetical protein; Provisional	83.25
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	82.82
COG1971	190	Predicted membrane protein [Function unknown]	80.13

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=100.00  E-value=2.8e-40  Score=298.64  Aligned_cols=116  Identities=47%  Similarity=0.763  Sum_probs=114.1

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHH
Q 027299          110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG  189 (225)
Q Consensus       110 ~~~s~KeAl~ws~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~G  189 (225)
                      .++++|||+.||++|+++|++||+++|++.|.+++.||+|||++|++||+||+|||++||++|++|+++|||+|+|||+|
T Consensus        28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g  107 (302)
T TIGR03718        28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG  107 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299          190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       190 AiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK  225 (225)
                      |++||++||++|++++++|+|++|+||+||+|+|+|
T Consensus       108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k  143 (302)
T TIGR03718       108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIK  143 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999986

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=99.89  E-value=2.8e-23  Score=175.02  Aligned_cols=76  Identities=37%  Similarity=0.572  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299          148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       148 ltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK  225 (225)
                      +|+|++|++||+||++|++++++  ++|+++|+|+++||++||+++|++|++.|+++++.|+|++++||++|+|+|+|
T Consensus         1 ltl~~lE~~Ls~DN~~vi~~~~~--~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k   76 (183)
T PF03741_consen    1 LTLVLLEIVLSIDNAFVIAMIFR--KLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIK   76 (183)
T ss_pred             CchhhhhHHHHhhHHHHHHHHHh--CCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999  59999999999999999999999999999999988899999999999999986

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=99.89  E-value=4.8e-23  Score=182.53  Aligned_cols=93  Identities=26%  Similarity=0.367  Sum_probs=85.9

Q ss_pred             HhhhhhheeCchhHH--HHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027299          131 FGLGVGFIEGASKAS--EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF  208 (225)
Q Consensus       131 Fg~~I~~~~G~~~a~--eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f  208 (225)
                      |+...|+..+.+.+.  +|+|+|++|++||+||++|++++++  ++|++|||||++||+.||+++|+++++.|+++++.+
T Consensus         2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~--~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~   79 (254)
T COG0861           2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILAS--KLPPKQRKKALFIGLAGALVLRIILLASISWLLTLT   79 (254)
T ss_pred             chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            566677776666665  9999999999999999999999999  678999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcC
Q 027299          209 EAVNLVLAGILLFSSFK  225 (225)
Q Consensus       209 ~wv~~iFGa~LI~tgiK  225 (225)
                      +|++++||++|+|+++|
T Consensus        80 ~~l~~~fg~~L~~~~~~   96 (254)
T COG0861          80 QPLLYIFGLYLLWRDIK   96 (254)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999875

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=99.85  E-value=1.8e-21  Score=169.00  Aligned_cols=71  Identities=34%  Similarity=0.531  Sum_probs=67.9

Q ss_pred             HHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       152 llE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK  225 (225)
                      ++|++||+||++|++++++  ++|+++|+|+++||++||+++|++|+++|+++++ ++|++++||++|+|+|+|
T Consensus         2 ~lE~vLS~DN~~via~~~~--~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k   72 (215)
T TIGR03716         2 ILEGLLSADNALVLAVMVK--HLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIK   72 (215)
T ss_pred             chhHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            5899999999999999988  7999999999999999999999999999999995 779999999999999976

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=99.74  E-value=7.8e-18  Score=141.54  Aligned_cols=76  Identities=25%  Similarity=0.373  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       147 FltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK  225 (225)
                      +++-.++|.+||+||++|+++  .++++|+++|||++.||+++|+++|++|+++|.++++ ++|++++||++|+|+|+|
T Consensus         2 ~~~li~le~vLs~DN~~vi~~--~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~   77 (176)
T TIGR03717         2 LLQIIAIDLVLGGDNAVVIAL--AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWK   77 (176)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence            467789999999999999998  4679999999999999999999999999999999996 899999999999999975

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK14013 hypothetical protein; Provisional

Probab=99.07  E-value=1.5e-09  Score=100.80  Aligned_cols=101  Identities=25%  Similarity=0.246  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhheeCchhHHHHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHH-HHHHH
Q 027299          118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLS  196 (225)
Q Consensus       118 l~ws~~wI~LAllFg~~I~~~~G~~~a~eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAi-VfR~i  196 (225)
                      .+||.++-.++++-+.+++   |.+.....++--++|.+||.||++|.+.+.+  +.|++.|+|.|.||++.|+ .||++
T Consensus         6 f~~s~~~t~~~l~~~~~~g---~~~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAvFgmRlv   80 (338)
T PRK14013          6 FRWSFIVTVIGLVLAAWLG---GLSALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAVFGMRLV   80 (338)
T ss_pred             HhHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666655544443   3466777888889999999999999999998  8999999999999999998 99999


Q ss_pred             HHHHHHHHHhhh------------------------hHHHHHHHHHHHHhh
Q 027299          197 LILLGTATLQRF------------------------EAVNLVLAGILLFSS  223 (225)
Q Consensus       197 fI~lG~~Ll~~f------------------------~wv~~iFGa~LI~tg  223 (225)
                      |-++-+++...-                        +-+...||.||+..+
T Consensus        81 fp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvf  131 (338)
T PRK14013         81 FPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVF  131 (338)
T ss_pred             HHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            999888776421                        245567788887654

>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.12  E-value=1.3e-05  Score=74.50  Aligned_cols=89  Identities=28%  Similarity=0.339  Sum_probs=70.3

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhhhheeCchhHHH-HHHH--HHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHH
Q 027299          114 YTSSVKTVAFCVSTAVAFGLGVGFIEGASKASE-FFAG--YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA  190 (225)
Q Consensus       114 ~KeAl~ws~~wI~LAllFg~~I~~~~G~~~a~e-FltG--yllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GA  190 (225)
                      ..+-..|+.+.-.++++-+.|..|.+|.....- |+..  -++|.|||-||++|=+-|.+  +..+.-|||-|.|||+.|
T Consensus         3 ~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk--~MS~~Wqk~FLT~GIlIA   80 (346)
T COG2899           3 AFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILK--DMSPFWQKRFLTWGILIA   80 (346)
T ss_pred             hHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHH--hccHHHHHHHHHHHHHHH
Confidence            344567888888889988888888776544444 4333  46899999999999999998  667899999999999988


Q ss_pred             HH-HHHHHHHHHHHH
Q 027299          191 IV-FRLSLILLGTAT  204 (225)
Q Consensus       191 iV-fR~ifI~lG~~L  204 (225)
                      +. ||++|=++-+++
T Consensus        81 VFGMRlvFPl~IV~v   95 (346)
T COG2899          81 VFGMRLVFPLVIVAV   95 (346)
T ss_pred             HHhhHHHHHHHHHHH
Confidence            75 899987766554

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=96.70  E-value=0.011  Score=50.40  Aligned_cols=66  Identities=24%  Similarity=0.272  Sum_probs=49.0

Q ss_pred             HHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299          151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG-AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       151 yllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~G-AiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK  225 (225)
                      -+.+.+.|.||+...+.+-        .+--++..|.+- ...+|...-.+. .++++|+|+.+.++++|.|+|.|
T Consensus       113 ~~~DlvfSlDSV~a~~~it--------~~~~iv~~g~i~si~~m~~~~~~~~-~~l~~~p~l~~~~~~~L~~ig~~  179 (183)
T PF03741_consen  113 ELADLVFSLDSVLAAVGIT--------DDFFIVITGNIISILLMRFLSFLLA-KLLERFPYLKYLAAAILGFIGVK  179 (183)
T ss_pred             HHHHHHHHHhHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999888654        344455555544 455666555554 57789999999999999999975

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=95.91  E-value=0.052  Score=46.19  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             HHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299          149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       149 tGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAi-VfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK  225 (225)
                      ..-+.+.+.|.||+.....+.+       .+-.++..|++-++ ++|..-- .=..++++|+|+.+.++++|.|+|.|
T Consensus       102 ~I~~~D~~fS~DsV~a~~~~~~-------~~~~li~~g~~i~i~~m~~~s~-~~~~~~~~~p~l~~~~~~~L~~ig~k  171 (176)
T TIGR03717       102 TIVIADAVMSLDNVLAVAGAAH-------GHLGLLIFGLLLSIPIIVWGST-LILKLMDRFPWIIYIGAALLGYVAGE  171 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445678899999998765442       23345555554443 4444433 34457789999999999999999976

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=95.91  E-value=0.046  Score=48.29  Aligned_cols=68  Identities=21%  Similarity=0.320  Sum_probs=50.8

Q ss_pred             HHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299          149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYG-IAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       149 tGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~G-I~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK  225 (225)
                      +.-+.+.+.|.||+...+.+-        .+.-+.+.| +++.+++|..-.++ ..++++|+|+.+.++++|.|+|.|
T Consensus       101 ~I~~~DlvFSlDSV~A~~git--------~~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~k  169 (215)
T TIGR03716       101 KVELMDIAFSVDSILAAVALS--------GQFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGVK  169 (215)
T ss_pred             HHHHHHHHHHhhhHHHHHHhc--------cChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678999999999888642        223344444 55566777777666 457899999999999999999975

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=95.68  E-value=0.062  Score=48.56  Aligned_cols=66  Identities=26%  Similarity=0.304  Sum_probs=50.6

Q ss_pred             HHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299          151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       151 yllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAi-VfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK  225 (225)
                      -+++.+-|.||+...+.+.        .+.-+.+.|.+-|+ +||...-.++ .+++||+++.|...++|+|+|.|
T Consensus       141 ~i~D~vFSlDSV~Aa~g~~--------~~~~im~~a~i~aI~~m~~aa~~l~-~ll~r~p~l~~~~~~iL~~IG~k  207 (254)
T COG0861         141 ELADLVFSLDSVIAAVGMA--------GHPFVMVTAVIFAILVMRFAAFLLA-RLLERHPTLKYLALVILLFIGVK  207 (254)
T ss_pred             HHHHHHHhhhHHHHHHHHh--------cCchHHHHHHHHHHHHHHHHHHHHH-HHHHHchHHHHHHHHHHHHHHHH
Confidence            4678999999999887655        44556666665554 5666655554 47799999999999999999975

>PRK10995 inner membrane protein; Provisional

Probab=94.73  E-value=0.14  Score=44.40  Aligned_cols=65  Identities=12%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK  225 (225)
Q Consensus       159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK  225 (225)
                      ..|+-+|..+.+  +.++++|+|+.....+-|.+.=.++.+.|..+++.|    ++++..+|++|++.|++
T Consensus        22 ~g~~pif~~lt~--~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~   90 (221)
T PRK10995         22 LTTVALFLGLSG--NMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFR   90 (221)
T ss_pred             hhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            467888887766  778999999999999999999999999999999754    57899999999999874

>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains

Probab=93.91  E-value=0.16  Score=47.42  Aligned_cols=46  Identities=30%  Similarity=0.400  Sum_probs=39.4

Q ss_pred             chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 027299          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQ  206 (225)
Q Consensus       159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAi-VfR~ifI~lG~~Ll~  206 (225)
                      -||++|=|-+.+  +-.+.-|+|-|.|||+.|+ .||++|=++-+++-.
T Consensus         1 FDNAVVNA~vLk--~Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a   47 (294)
T PF04332_consen    1 FDNAVVNATVLK--RMSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTA   47 (294)
T ss_pred             CCchhhhHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            399999999888  5568999999999999997 489999888777654

>PRK09304 arginine exporter protein; Provisional

Probab=93.18  E-value=0.69  Score=39.06  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhhhhHH----HHHHHHHHHH
Q 027299          147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEAV----NLVLAGILLF  221 (225)
Q Consensus       147 FltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~-Ll~~f~wv----~~iFGa~LI~  221 (225)
                      ++-|+.+-..-.-||++|+..=.+     . ...-....|+..+.++=......|.. +++.++|+    ++++++||+|
T Consensus         9 ~~~g~~~~~tPGP~~~~v~~~~~~-----~-~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly   82 (207)
T PRK09304          9 FALGAAMILPLGPQNAFVMNQGIR-----R-QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW   82 (207)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHc-----c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555566789888874222     1 12334556666666666666666764 46676665    7789999999


Q ss_pred             hhcC
Q 027299          222 SSFK  225 (225)
Q Consensus       222 tgiK  225 (225)
                      .|+|
T Consensus        83 Lg~~   86 (207)
T PRK09304         83 YGFG   86 (207)
T ss_pred             HHHH
Confidence            9985

>TIGR00427 membrane protein, MarC family

Probab=92.87  E-value=0.53  Score=40.75  Aligned_cols=66  Identities=14%  Similarity=0.293  Sum_probs=56.5

Q ss_pred             cchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK  225 (225)
Q Consensus       158 SvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK  225 (225)
                      -..|+-+|..+.+  +.++++|+|+.....+-|.+.=.+|.+.|-++++.|    +-++..+|++|..+|++
T Consensus        20 Pig~ipvfl~lt~--~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~   89 (201)
T TIGR00427        20 PIGNIPIFISLTE--YYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMD   89 (201)
T ss_pred             cchHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            4578889988777  789999999999999999999999999999999755    45688899999888764

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=92.26  E-value=0.72  Score=39.83  Aligned_cols=65  Identities=18%  Similarity=0.267  Sum_probs=56.0

Q ss_pred             chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK  225 (225)
Q Consensus       159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK  225 (225)
                      ..|+.+|+-+.+  +.++++|+|+..-..+-|.+.=.+|.++|.++++.|    +-++..+|++|...|++
T Consensus        18 ~g~ip~f~~lt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~   86 (203)
T PF01914_consen   18 IGNIPIFLSLTK--GMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALE   86 (203)
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            468888888777  778999999999999999999999999999999865    35688899999888763

These proteins may be transporters. ; GO: 0016021 integral to membrane

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=91.45  E-value=0.74  Score=42.89  Aligned_cols=66  Identities=27%  Similarity=0.348  Sum_probs=50.7

Q ss_pred             HHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcC
Q 027299          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       152 llE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f~wv~~iFGa~LI~tgiK  225 (225)
                      +.+.+-|+||+.....+-+  + |    --+..-++++-+.+|....+++ .++++|+++.|..+++|.++|.|
T Consensus       200 ~~DlvFslDSIpAi~aiT~--d-~----~iV~tsnifaIlgLR~lyf~l~-~ll~rf~~L~~~~a~iL~fIGvk  265 (302)
T TIGR03718       200 TTDLIFAVDSIPAIFAITQ--D-P----FIVFTSNIFAILGLRSLYFLLA-GLLERFHYLKYGLAVILVFIGVK  265 (302)
T ss_pred             HHHHHHhhccHHHHHHhhc--C-C----eEEehHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHH
Confidence            5788999999998886543  1 1    1334455667777999877655 46799999999999999999986

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PRK11111 hypothetical protein; Provisional

Probab=91.21  E-value=1  Score=39.50  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=54.6

Q ss_pred             chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK  225 (225)
Q Consensus       159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK  225 (225)
                      ..|+-+|..+.+  +.++++|+|+.....+-|.+.=.+|.++|-++++-|    +-.+..||++|...|++
T Consensus        24 ig~ipiflslt~--~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~   92 (214)
T PRK11111         24 VGILPVFISMTS--HQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMS   92 (214)
T ss_pred             chhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            568888887776  678899999999999999999999999999999755    45688899999888764

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=91.20  E-value=2.3  Score=35.73  Aligned_cols=62  Identities=10%  Similarity=0.015  Sum_probs=39.8

Q ss_pred             cchhHHHHHHHHhhcCCChhhhhh--hHHHHHHHHHHHHHHHHHHHH-HHHhhhhHH----HHHHHHHHHHhhcC
Q 027299          158 SVDNLFVFVLIFKYFKVPVMYQNR--VLSYGIAGAIVFRLSLILLGT-ATLQRFEAV----NLVLAGILLFSSFK  225 (225)
Q Consensus       158 SvDNafVfalIF~~F~VP~~~Q~R--vL~~GI~GAiVfR~ifI~lG~-~Ll~~f~wv----~~iFGa~LI~tgiK  225 (225)
                      .-||++|+..=.+      .-.++  ....|+..+...=.++...|. .+++.++|+    ++++++||+|.|+|
T Consensus        21 GP~~~~v~~~~~~------~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~   89 (195)
T PRK10323         21 GPNNILALSSATS------HGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWK   89 (195)
T ss_pred             ChHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688888874222      11222  245566666666555555666 566666654    78999999999986

>PRK10739 putative antibiotic transporter; Provisional

Probab=91.09  E-value=1.1  Score=38.94  Aligned_cols=64  Identities=19%  Similarity=0.297  Sum_probs=54.9

Q ss_pred             chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhc
Q 027299          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSF  224 (225)
Q Consensus       159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgi  224 (225)
                      ..|+-+|..+.+  +.++++|+|+..-..+-|.+.=.+|.+.|-.+++.|    +-++..||++|...|+
T Consensus        18 ig~ipiflslt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial   85 (197)
T PRK10739         18 LGNLPIFMSVLK--HLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAI   85 (197)
T ss_pred             hhHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            568888988777  778999999999999999999999999999999765    3568889999988876

>TIGR00948 2a75 L-lysine exporter

Probab=91.05  E-value=1.2  Score=36.36  Aligned_cols=61  Identities=16%  Similarity=0.089  Sum_probs=39.5

Q ss_pred             chhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhh----hhHHHHHHHHHHHHhhcC
Q 027299          159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       159 vDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~-Ll~~----f~wv~~iFGa~LI~tgiK  225 (225)
                      -||++|+..-.+.     + .--....|+..+...=+++..+|.. +++.    +.++++++|+||+|.|+|
T Consensus         7 P~~~~vi~~~~~~-----~-~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~   72 (177)
T TIGR00948         7 AQNAFVLRQGIRR-----E-HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFL   72 (177)
T ss_pred             chHHHHHHHHHcc-----c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            4788888854431     1 1223455666666666666666665 5544    446689999999999985

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=89.96  E-value=1.2  Score=39.01  Aligned_cols=66  Identities=26%  Similarity=0.361  Sum_probs=56.8

Q ss_pred             cchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhcC
Q 027299          158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFK  225 (225)
Q Consensus       158 SvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~~Ll~~f----~wv~~iFGa~LI~tgiK  225 (225)
                      ...|+-+|..+.+  +.|+++|+|+..-..+-|.+.=.+|.++|.++++-|    +-....+|++|.+.|++
T Consensus        20 P~G~ipvf~slt~--~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~   89 (203)
T COG2095          20 PIGNLPVFISLTK--GLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALR   89 (203)
T ss_pred             CCchhHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHH
Confidence            5679999998777  889999999999999999999999999999999744    35688899999888763

>PRK10229 threonine efflux system; Provisional

Probab=89.41  E-value=1.9  Score=35.96  Aligned_cols=67  Identities=16%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             HHHHHhcchhHHHHHHHHhhcCCChhhhhhhHH---HHHHHHHHHHHHHHHHHH-HHHhhhh----HHHHHHHHHHHHhh
Q 027299          152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS---YGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSS  223 (225)
Q Consensus       152 llE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~---~GI~GAiVfR~ifI~lG~-~Ll~~f~----wv~~iFGa~LI~tg  223 (225)
                      ++..+=.-||++|+..=.       ++.+|.-.   .|+.-+..+=.++..+|. .++++++    .+++++++||+|.|
T Consensus        14 ~~~~sPGP~~~~vi~~~~-------~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg   86 (206)
T PRK10229         14 VALMSPGPDFFFVSQTAV-------SRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMG   86 (206)
T ss_pred             HHhcCCCchhHHHHHHHH-------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            444455568888877422       23344444   444445555555555676 4555555    55789999999999


Q ss_pred             cC
Q 027299          224 FK  225 (225)
Q Consensus       224 iK  225 (225)
                      +|
T Consensus        87 ~~   88 (206)
T PRK10229         87 YQ   88 (206)
T ss_pred             HH
Confidence            75

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=85.43  E-value=4.3  Score=34.73  Aligned_cols=69  Identities=28%  Similarity=0.317  Sum_probs=39.3

Q ss_pred             HHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHhh----hhHHHHHHHHHHHHhhcC
Q 027299          153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       153 lE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~GAiVfR~ifI~lG~-~Ll~~----f~wv~~iFGa~LI~tgiK  225 (225)
                      +-.+=.-||++|+.-=.+. +   ..+--..-.|+.-+.+.=.++..+|. .++..    |..+++++++||+|.|+|
T Consensus        16 ~~~~PGP~~~~v~~~~~~~-G---~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~   89 (208)
T COG1280          16 LAATPGPDNLLVLARSLSR-G---RRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWK   89 (208)
T ss_pred             HhcCCCccHHHHHHHHHHh-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3344456888887742220 0   11112233444444555555566663 45544    456689999999999985

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=85.32  E-value=2.8  Score=35.00  Aligned_cols=64  Identities=9%  Similarity=0.110  Sum_probs=37.3

Q ss_pred             HhcchhHHHHHHHHhhcCCChhhhhhhH--HHHHHHHHHHHHHHHHHHHH-HHhhhh----HHHHHHHHHHHHhhcC
Q 027299          156 SLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSFK  225 (225)
Q Consensus       156 sLSvDNafVfalIF~~F~VP~~~Q~RvL--~~GI~GAiVfR~ifI~lG~~-Ll~~f~----wv~~iFGa~LI~tgiK  225 (225)
                      +=.-||+.|+.-=.+      .-+++.+  ..|+.-+...=.++..+|.. +++.++    .+++++++||+|.|+|
T Consensus        19 sPGP~~~~v~~~~~~------~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~   89 (205)
T PRK10520         19 SPGSGAINTMSTSIS------HGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQ   89 (205)
T ss_pred             CCchhHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            344577777763221      2222322  23555555555555556654 555544    5578999999999985

>PRK10958 leucine export protein LeuE; Provisional

Probab=84.90  E-value=4.9  Score=34.26  Aligned_cols=64  Identities=20%  Similarity=0.194  Sum_probs=38.3

Q ss_pred             HhcchhHHHHHHHHhhcCCChhhhhhhH--HHHHHHHHHHHHHHHHHHHH-HHhh----hhHHHHHHHHHHHHhhcC
Q 027299          156 SLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       156 sLSvDNafVfalIF~~F~VP~~~Q~RvL--~~GI~GAiVfR~ifI~lG~~-Ll~~----f~wv~~iFGa~LI~tgiK  225 (225)
                      +=.-||++|+..=.+      +-+++.+  ..|+..+.+.=++....|.. +++.    +..+++++|+||+|.|+|
T Consensus        23 sPGP~~~~v~~~~~~------~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~   93 (212)
T PRK10958         23 LPGPNSLYVLSTAAR------RGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVK   93 (212)
T ss_pred             CCchHHHHHHHHHHh------hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            345688888874222      2223333  33555555555555556664 4434    445689999999999975

>PRK11469 hypothetical protein; Provisional

Probab=83.25  E-value=9.8  Score=32.73  Aligned_cols=94  Identities=19%  Similarity=0.188  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhhhhhee----Cc-h------hHHHHHHHHHHHHHhcchhHHH-HHHHHhhcCCChhhhhhhHHHHHHHH
Q 027299          123 FCVSTAVAFGLGVGFIE----GA-S------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA  190 (225)
Q Consensus       123 ~wI~LAllFg~~I~~~~----G~-~------~a~eFltGyllE~sLSvDNafV-falIF~~F~VP~~~Q~RvL~~GI~GA  190 (225)
                      =|++..+++.+++|...    +. +      .-..+....++=.++|.||+-| +.+  +..++|  .-.-++..|+...
T Consensus        70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~--~~~g~~--~~~~~~~ig~~s~  145 (188)
T PRK11469         70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGL--AFLQVN--IIATALAIGCATL  145 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHH--HHhhhh--HHHHHHHHHHHHH
Confidence            48888888888888532    11 1      1134556677777999999998 443  433543  2233455555544


Q ss_pred             HHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHhhcC
Q 027299          191 IVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFK  225 (225)
Q Consensus       191 iVfR~ifI~lG~~Ll~~-----f~wv~~iFGa~LI~tgiK  225 (225)
                      +     ++.+|.++=++     -.|..+++|++|+..|+|
T Consensus       146 ~-----~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~  180 (188)
T PRK11469        146 I-----MSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQ  180 (188)
T ss_pred             H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4     33344332211     136889999999999875

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=82.82  E-value=4.4  Score=32.99  Aligned_cols=42  Identities=21%  Similarity=0.276  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHhhhhH----HHHHHHHHHHHhhcC
Q 027299          184 SYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFK  225 (225)
Q Consensus       184 ~~GI~GAiVfR~ifI~lG~-~Ll~~f~w----v~~iFGa~LI~tgiK  225 (225)
                      ..|+..+.+.=+++...|+ .+++.+++    +++++|+||+|.|++
T Consensus        25 ~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~   71 (185)
T TIGR00949        25 ILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIK   71 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555655 35555554    688999999999974

>COG1971 Predicted membrane protein [Function unknown]

Probab=80.13  E-value=19  Score=31.89  Aligned_cols=100  Identities=18%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhhhhhhee----Cchh--------HH-HHHHHHHHHHHhcchhHHHHHHHHhhcCCChhhhhhhHHHHHH
Q 027299          122 AFCVSTAVAFGLGVGFIE----GASK--------AS-EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA  188 (225)
Q Consensus       122 ~~wI~LAllFg~~I~~~~----G~~~--------a~-eFltGyllE~sLSvDNafVfalIF~~F~VP~~~Q~RvL~~GI~  188 (225)
                      .=|++-+++..+++|.-.    +.+.        .. .|.+-.++-.+.|.||+-|=+- ++  .++-.-+.-+...|++
T Consensus        69 ~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~~~~~~~~laiatSidal~vG~~-~a--~lgv~i~~~av~iG~~  145 (190)
T COG1971          69 AHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDLNFKELILLAIATSIDALAVGVG-LA--FLGVNILLAAVAIGLI  145 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchhhHHHHHHHHHHHHHHHHHHhhh-HH--HhcchHHHHHHHHHHH
Confidence            447777788877777532    2221        21 2778889999999999988763 23  3556677778888854


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhcC
Q 027299          189 GAIVFRLSLILLGTATLQRF-EAVNLVLAGILLFSSFK  225 (225)
Q Consensus       189 GAiVfR~ifI~lG~~Ll~~f-~wv~~iFGa~LI~tgiK  225 (225)
                      -.+ +=.+-..+|-.+-+.+ .|..+++|++|+..|.|
T Consensus       146 T~i-l~~~G~~IG~~~g~~~g~~ae~lgGiiLI~~G~~  182 (190)
T COG1971         146 TLI-LSALGAIIGRKLGKFLGKYAEILGGIILIGIGVK  182 (190)
T ss_pred             HHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            322 1111222222222111 36788899999887754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00