Citrus Sinensis ID: 027307

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MSRERERFDEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSSGAVTVAAAPSPSLHTPQPPPPPLPSTPSCSSSMYAQPITSAADYSTISGNQNVSYFG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSRERERFDEIGKKIKREAdasshmgrrhmlgppgtlntitpcaACKLLRRRcaqecpfspyfsphepqkfasvHKVFGASNvskmlndvpesqradAANSLVYEAnvrlrdpvygcmGAISTLQQQVQCLQAELNVVRNEIIKYKyreasnvmpsshhphQVALLSsgavtvaaapspslhtpqppppplpstpscsssmyaqpitsaadystisgnqnvsyfg
Flexible Loop (DISEMBL)
msrererfdeigkkikreadasshmgrrhmlgppgtlntITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSSGAVTVAAAPSPSLHTPQPPPPPLPSTPSCSSSMYAQPITSAADYSTISGNQNVSYFG
Low Complexity Region (SEG)
MSRERERFDEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSSGAVTVAAApspslhtpqppppplpstpscsssMYAQPITSAADYSTISGNQNVSYFG
Disordered region (IsUnstruct)
***********************************TLNTITPCAACKLLRRRCAQECPFSPYFSPHE*QKFASVHKVFGA*******************NSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA***************************************************************************
Disordered Region (DISOPRED)
*******************************************AACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEII**********************************************************************************
Disordered Region (DISEMBL)
********DEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSSGAVTV*************************SSMYAQPITSAADYSTISGNQNVSYFG
Disordered Region (DISPRO)
**************IK***********************ITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMP**********************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRERERFDEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAxxxxxxxxxxxxxxxxxxxxxIIKYKYREASNVMPSSHHPHQVALLSSGAVTVAAAPSPSLHTPQPPPPPLPSTPSCSSSMYAQPITSAADYSTISGNQNVSYFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q8L5T5	224	LOB domain-containing pro	yes	no	0.982	0.986	0.679	3e-69
Q9AT61	268	LOB domain-containing pro	no	no	0.68	0.570	0.693	1e-58
Q8LBW3	193	LOB domain-containing pro	no	no	0.546	0.637	0.596	1e-37
Q9SHE9	172	LOB domain-containing pro	no	no	0.497	0.651	0.642	1e-36
O64836	311	LOB domain-containing pro	no	no	0.466	0.337	0.609	2e-35
Q8L8Q3	159	LOB domain-containing pro	no	no	0.52	0.735	0.572	4e-34
Q9FKZ3	313	LOB domain-containing pro	no	no	0.466	0.335	0.6	5e-34
Q9SK08	232	LOB domain-containing pro	no	no	0.502	0.487	0.557	1e-33
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.724	0.876	0.434	2e-33
Q9LQR0	190	LOB domain-containing pro	no	no	0.546	0.647	0.524	2e-33

>sp|Q8L5T5|LBD15_ARATH LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2

 Score =  261 bits (667), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 155/228 (67%), Positives = 168/228 (73%), Gaps = 7/228 (3%)

Query: 1   MSRERERFDEIGKKIKREADASSHMG---RRHMLGPPGTLNTITPCAACKLLRRRCAQEC 57
           MSRERERF+EIGKKIKREADA  H     RR M GPPGTLNTITPCAACKLLRRRCAQEC
Sbjct: 1   MSRERERFEEIGKKIKREADAWPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQEC 60

Query: 58  PFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGC 117
           PFSPYFSPHEP KFASVHKVFGASNVSKML +VPESQRADAANSLVYEANVRLRDPVYGC
Sbjct: 61  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGC 120

Query: 118 MGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSSGAVTVAAAP 177
           MGAIS LQQQVQ LQAEL  VR+EI+KYK REA   +    +       +SG V+V A P
Sbjct: 121 MGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQVAGFHNSGGVSVIAPP 180

Query: 178 SPSLHTPQPPPPPLPSTPSCSSSMYAQPITSAADYSTISGNQNVSYFG 225
                TP  P    P +P  SS +++QP T   +Y  I    N  YFG
Sbjct: 181 PQRPTTPPQPTTAHPPSP--SSCVFSQPTTRDLEYGNIESENN--YFG 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2

 Score =  226 bits (575), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/163 (69%), Positives = 131/163 (80%), Gaps = 10/163 (6%)

Query: 1   MSRERERFDE---IGKKIKRE---ADASSH--MG-RRHMLGPPGT-LNTITPCAACKLLR 50
           MSRERE F E     KKIK++      + H  MG RRH+  PPGT LNT+TPCAACKLLR
Sbjct: 1   MSREREGFGEYYETVKKIKKDPAFETTTDHAVMGIRRHVAVPPGTTLNTVTPCAACKLLR 60

Query: 51  RRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRL 110
           RRCA+ECPFSPYFSPHEP KFA+VHKVFGASNVSKML +V ESQR DAANSLVYEAN+RL
Sbjct: 61  RRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRL 120

Query: 111 RDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNV 153
           RDP+YGCMGAIS LQ  +Q LQ+EL  VR EI+++KY+EA+ +
Sbjct: 121 RDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTI 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 96/129 (74%), Gaps = 6/129 (4%)

Query: 31  LGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDV 90
           +G PG+    +PCA+CKLLRRRCA++C F+PYF P +P KFA VHKVFGASNVSKML ++
Sbjct: 1   MGGPGS----SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQEL 56

Query: 91  PESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150
           P  QRADA NSLV+EAN R+RDPVYGC+GAIS LQ QV  LQ +L V + EI+  + +  
Sbjct: 57  PVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE 116

Query: 151 SNVMPSSHH 159
             +   SHH
Sbjct: 117 PTL--QSHH 123

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 94/112 (83%)

Query: 41  TPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAAN 100
           +PCAACKLLRRRCAQ+C FSPYF   EPQKFA+VH+VFGASNV+KML ++P  QR DA +
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 101 SLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASN 152
           S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQA+L + + E++  + R+++N
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 123

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 80/105 (76%)

Query: 41  TPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAAN 100
           TPCAACKLLRR+C QEC F+PYF P  PQKF  VH+VFGASNV+K+LND+P  QR D  N
Sbjct: 4   TPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVN 63

Query: 101 SLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKY 145
           SL YEA  R+RDP+YGC+G IS LQQ ++ +Q +L   + E++ Y
Sbjct: 64  SLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGY 108

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  144 bits (364), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 86/117 (73%)

Query: 29  HMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLN 88
           H+ G   +  T +PCAACK LRR+C  +C F+PYF P EP KFA+VH++FGASNVSK+L+
Sbjct: 26  HLKGIYMSNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILH 85

Query: 89  DVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKY 145
           +V   QR DA NSL YEA  RL+DPVYGC+GAIS LQ+QV  LQ EL     ++++Y
Sbjct: 86  EVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRY 142

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  144 bits (363), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 80/105 (76%)

Query: 41  TPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAAN 100
           +PCAACK LRR+C QEC F+PYF P +PQKFA VHKVFGASNV+K+LN++  +QR DA N
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 101 SLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKY 145
           SL YEA  RLRDPVYGC+G IS LQ +++ +  +L   + E+  Y
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY 110

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 83/113 (73%)

Query: 39  TITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADA 98
            ++PCAACK+LRRRCA +C  +PYF P +P KF   H+VFGASN+ K L ++PESQR DA
Sbjct: 52  VLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDA 111

Query: 99  ANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREAS 151
            NS+VYEA  R+RDPVYGC GAI  LQ+QV  LQA+L   + E++  + + +S
Sbjct: 112 VNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSS 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/175 (43%), Positives = 97/175 (55%), Gaps = 12/175 (6%)

Query: 41  TPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAAN 100
           +PCAACK LRR+C   C F+PYF P EP KFA+VHK+FGASNV+K+LN++   QR DA N
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 101 SLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160
           SL YEA  R+RDPVYGC+GAIS LQ+QV  LQ EL+    ++  Y    ++   P +   
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGN--- 126

Query: 161 HQVALLSSGAVTVAAAPSPSLHTPQPPPPPLPSTPSCSSSMYAQPITSAADYSTI 215
                     V +   P P      PP  P+      S  M   P  +   Y T 
Sbjct: 127 ---------VVDLVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTF 172

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/124 (52%), Positives = 89/124 (71%), Gaps = 1/124 (0%)

Query: 39  TITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADA 98
            ++PCAACK+LRRRCA+ C  +PYF P +P KF   H+VFGASN+ K L ++PESQR DA
Sbjct: 30  VLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDA 89

Query: 99  ANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSH 158
            NS+VYEA  R+RDPVYGC GAI  LQ+QV  LQA+L   + E++  +++  SN++   +
Sbjct: 90  VNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR-SNLLELIY 148

Query: 159 HPHQ 162
           +  Q
Sbjct: 149 NMDQ 152

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
225448621	224	PREDICTED: LOB domain-containing protein	0.968	0.973	0.779	2e-88
255559635	223	LOB domain-containing protein, putative	0.973	0.982	0.781	4e-88
356516277	222	PREDICTED: LOB domain-containing protein	0.96	0.972	0.761	4e-82
356507496	222	PREDICTED: LOB domain-containing protein	0.755	0.765	0.869	7e-82
224128870	180	predicted protein [Populus trichocarpa]	0.728	0.911	0.846	7e-79
357464365	237	LOB domain-containing protein [Medicago	0.977	0.928	0.690	6e-77
224124780	223	predicted protein [Populus trichocarpa]	0.973	0.982	0.678	1e-74
449457480	245	PREDICTED: LOB domain-containing protein	0.995	0.914	0.686	6e-74
225434379	229	PREDICTED: LOB domain-containing protein	0.764	0.751	0.762	9e-73
255553357	233	LOB domain-containing protein, putative	0.777	0.751	0.733	5e-69

>gi|225448621|ref|XP_002279029.1| PREDICTED: LOB domain-containing protein 15 [Vitis vinifera] gi|297736521|emb|CBI25392.3| unnamed protein product [Vitis vinifera]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/231 (77%), Positives = 193/231 (83%), Gaps = 13/231 (5%)

Query: 1   MSRERERFDEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS 60
           MSRERERFDEIGKKIKRE DA + MGRRHMLGPPGTLN+ITPCAACKLLRRRCAQECPFS
Sbjct: 1   MSRERERFDEIGKKIKRETDAFTQMGRRHMLGPPGTLNSITPCAACKLLRRRCAQECPFS 60

Query: 61  PYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGA 120
           PYFSPHEPQKFASVHKVFGASNVSKML +VPESQRADAANSLVYEANVRLRDPVYGCMGA
Sbjct: 61  PYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGA 120

Query: 121 ISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSSGAVTV------A 174
           IS LQQQVQ LQAELN VR EI+KYKYREA N++P SH    +ALLSSGAV+V       
Sbjct: 121 ISALQQQVQSLQAELNAVRAEILKYKYREA-NIIPPSH----IALLSSGAVSVAAPPPAQ 175

Query: 175 AAPSPSLHTPQPPPPPLPSTPSCSSSMYAQPITSAADYSTISGNQNVSYFG 225
                    P PPP PLP  P+ SSSMY QP +S+ADYSTIS ++NVSYFG
Sbjct: 176 PPAQAPPPPPPPPPIPLPLPPNSSSSMYTQP-SSSADYSTIS-SENVSYFG 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559635|ref|XP_002520837.1| LOB domain-containing protein, putative [Ricinus communis] gi|223539968|gb|EEF41546.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/229 (78%), Positives = 193/229 (84%), Gaps = 10/229 (4%)

Query: 1   MSRERERFDEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS 60
           MSRERERFDEIGKKIKRE DASS MGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS
Sbjct: 1   MSRERERFDEIGKKIKREIDASSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS 60

Query: 61  PYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGA 120
           PYFSPHEPQKFASVHKVFGASNVSKML +VPESQRADAANSLVYEANVRLRDPVYGCMGA
Sbjct: 61  PYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGA 120

Query: 121 ISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSSGAVTVAAAP--- 177
           IS LQQQ+Q LQAELN VR EI+KYKYREA N++PS+H    VALLSSGAV+VAA     
Sbjct: 121 ISALQQQIQTLQAELNAVRAEILKYKYREA-NILPSTH----VALLSSGAVSVAATSQSL 175

Query: 178 -SPSLHTPQPPPPPLPSTPSCSSSMYAQPITSAADYSTISGNQNVSYFG 225
             P    P PPPPP     S S+S+Y    T+ ADYS+IS ++NVS+FG
Sbjct: 176 TPPPPTPPPPPPPPPLPPTSSSTSLYTHQPTTVADYSSIS-SENVSFFG 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516277|ref|XP_003526822.1| PREDICTED: LOB domain-containing protein 15-like [Glycine max]

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 176/231 (76%), Positives = 187/231 (80%), Gaps = 15/231 (6%)

Query: 1   MSRERERFDEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS 60
           MSRERERFDEIGKKIKRE D SS MGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS
Sbjct: 1   MSRERERFDEIGKKIKRERDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS 60

Query: 61  PYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGA 120
           PYFSPHEPQKFASVHKVFGASNVSKML +VPE QRADAANSLVYEANVRLRDPVYGCMGA
Sbjct: 61  PYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGA 120

Query: 121 ISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALL-SSGAVTVAA--AP 177
           IS LQQQVQ LQAELN VR EI+KYK REA N++PSSHH   V +L SSGAV++AA   P
Sbjct: 121 ISALQQQVQSLQAELNAVRGEILKYKLREA-NMIPSSHH---VGMLPSSGAVSIAAPPPP 176

Query: 178 SPSLHTPQPPPPPLPSTPSCSSSMYAQ---PITSAADYSTISGNQNVSYFG 225
            P    P PPP       S SSS+Y Q   P T    Y+TIS + N+SYFG
Sbjct: 177 PPPPPPPPPPPSLPLPLTSPSSSIYIQHRDPTT----YTTISSD-NISYFG 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507496|ref|XP_003522500.1| PREDICTED: LOB domain-containing protein 15-like [Glycine max]

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 153/176 (86%), Positives = 160/176 (90%), Gaps = 6/176 (3%)

Query: 1   MSRERERFDEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS 60
           MSRERERFDEIGKKIKRE D SS MGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS
Sbjct: 1   MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS 60

Query: 61  PYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGA 120
           PYFSPHEPQKFASVHKVFGASNVSKML +VPE QRADAANSLVYEANVRLRDPVYGCMGA
Sbjct: 61  PYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGA 120

Query: 121 ISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALL-SSGAVTVAA 175
           IS LQQQVQ LQAELN VR EI+KYK REA N++PSSH    VA+L SSGAV++AA
Sbjct: 121 ISALQQQVQSLQAELNAVRGEILKYKLREA-NMIPSSH----VAMLPSSGAVSIAA 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128870|ref|XP_002328987.1| predicted protein [Populus trichocarpa] gi|222839221|gb|EEE77572.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 143/169 (84%), Positives = 157/169 (92%), Gaps = 5/169 (2%)

Query: 5   RERFDEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFS 64
           R+RFDE+GKKIKRE+DA+  MGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFS
Sbjct: 3   RKRFDELGKKIKRESDATYQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFS 62

Query: 65  PHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTL 124
           PHEPQKFASVHKVFGASNVSKML +VP++QRADAANSLVYEANVRLRDPVYGCMGAIS L
Sbjct: 63  PHEPQKFASVHKVFGASNVSKMLMEVPQNQRADAANSLVYEANVRLRDPVYGCMGAISAL 122

Query: 125 QQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSSGAVTV 173
           QQQVQ L+AELN VRNEI+KY+YREA N++ SSH    VALLSSGAV++
Sbjct: 123 QQQVQSLEAELNAVRNEILKYRYREA-NIIHSSH----VALLSSGAVSI 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464365|ref|XP_003602464.1| LOB domain-containing protein [Medicago truncatula] gi|355491512|gb|AES72715.1| LOB domain-containing protein [Medicago truncatula]

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 188/242 (77%), Gaps = 22/242 (9%)

Query: 1   MSRERERFDEIGKKIKREAD-----ASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQ 55
           MSRERERFDEIGKKIKRE D     +S+ MGRRHMLGPPGTLNTITPCAACKLLRRRCAQ
Sbjct: 1   MSRERERFDEIGKKIKREGDHDVSNSSNQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQ 60

Query: 56  ECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVY 115
           ECPFSPYFSPHEPQKFASVHKVFGASNVSKML +V E  RADAANSLVYEANVRLRDPVY
Sbjct: 61  ECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVY 120

Query: 116 GCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREAS-----------NVMPSSHHPHQVA 164
           GCMGAIS LQQQVQ LQAELN++R EI+KYK REA+           N++PSS   HQ+A
Sbjct: 121 GCMGAISALQQQVQSLQAELNLLRGEILKYKLREAANINMNMNMNMNNMIPSS---HQLA 177

Query: 165 LL-SSGAVTVAAAPSPSLHTPQPPPPPLPSTPSCSSSMYAQPITSAADYSTISGNQNVSY 223
           +L S+ +V V+ A  P    P PPPP   +T + SSS+Y Q      +Y+TIS + N+SY
Sbjct: 178 MLPSNSSVAVSIAAPPPPPPPLPPPPISSTTSNSSSSIYFQ--QRDPNYNTISSDDNISY 235

Query: 224 FG 225
           FG
Sbjct: 236 FG 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124780|ref|XP_002319420.1| predicted protein [Populus trichocarpa] gi|222857796|gb|EEE95343.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/227 (67%), Positives = 179/227 (78%), Gaps = 8/227 (3%)

Query: 1   MSRERERFDEIGKKIKREADASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFS 60
           MSR+RER +E+GK+IKRE+DASS MGRR MLGPP  LNT+TPCAACKLLRRRCA+ECPFS
Sbjct: 1   MSRDRERSEELGKRIKRESDASSFMGRRQMLGPPVILNTVTPCAACKLLRRRCAEECPFS 60

Query: 61  PYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGA 120
           PYFSPHEPQKFA+VHKV+GASNVSK+L +VPESQR D ANSLVYEAN+RLRDPVYG MGA
Sbjct: 61  PYFSPHEPQKFAAVHKVYGASNVSKLLMEVPESQRVDTANSLVYEANLRLRDPVYGSMGA 120

Query: 121 ISTLQQQVQCLQAELNVVRNEIIKYKYRE---ASNVMPSSHHPHQVALLSSGAVTVAAAP 177
           IS LQQQ+Q LQAEL+ +R EI+ YKYRE   A+N++ SS HP   AL+SS  V++ + P
Sbjct: 121 ISALQQQIQSLQAELSAIRAEILNYKYREAAAATNII-SSTHP---ALVSSATVSI-STP 175

Query: 178 SPSLHTPQPPPPPLPSTPSCSSSMYAQPITSAADYSTISGNQNVSYF 224
           S +L  P  PPPP     S SSS    P TS + YSTIS   NV YF
Sbjct: 176 SQTLAPPPQPPPPSVVVSSSSSSSLYTPPTSTSGYSTISSENNVPYF 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457480|ref|XP_004146476.1| PREDICTED: LOB domain-containing protein 15-like [Cucumis sativus] gi|449491712|ref|XP_004158981.1| PREDICTED: LOB domain-containing protein 15-like [Cucumis sativus]

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 160/233 (68%), Positives = 180/233 (77%), Gaps = 9/233 (3%)

Query: 1   MSRERERFDEIGKKIKREADASSH------MGRRHML-GPPGTLNTITPCAACKLLRRRC 53
           MS+ERERFDEI KKIKRE D SS+      MGRRH L GPPG LNTITPCAACKLLRRRC
Sbjct: 1   MSKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGPPGALNTITPCAACKLLRRRC 60

Query: 54  AQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDP 113
           AQECPFSPYFSPHEP KFASVHKVFGASNVSKML +V ++QRADAANSLVYEANVRLRDP
Sbjct: 61  AQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSDNQRADAANSLVYEANVRLRDP 120

Query: 114 VYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALL-SSGAVT 172
           VYGCMGAIS LQ Q+Q LQAELN VR EI+++K+REA+N++ SS     V  L SS  V 
Sbjct: 121 VYGCMGAISALQHQIQSLQAELNAVRAEILRHKFREANNIIHSSPQQQHVPFLSSSSTVV 180

Query: 173 VAAAPSPSLHTPQPPPPPLPSTPSCSSSMY-AQPITSAADYSTISGNQNVSYF 224
           V+ A  P    P  PPP      S SSS+Y  + + +AADYSTIS N+NV+YF
Sbjct: 181 VSVALPPPPPPPPLPPPHHHDASSSSSSLYNRRTVAAAADYSTISSNENVTYF 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434379|ref|XP_002269676.1| PREDICTED: LOB domain-containing protein 15 [Vitis vinifera] gi|297745786|emb|CBI15842.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 152/177 (85%), Gaps = 5/177 (2%)

Query: 1   MSRERER-FDEIGKKIKREAD-ASSHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECP 58
           MSRERER FDE+GKKIKRE D  SSHMGRR +LGPPGTLNTITPCAACKLLRRRCA+ECP
Sbjct: 1   MSRERERLFDEVGKKIKRETDHKSSHMGRRQLLGPPGTLNTITPCAACKLLRRRCAEECP 60

Query: 59  FSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCM 118
           FSPYFSPHEP KFA+VHKVFGASNVSKML DV E+QRADA NSLV+EAN+RLRDPVYGCM
Sbjct: 61  FSPYFSPHEPHKFAAVHKVFGASNVSKMLMDVAENQRADAVNSLVFEANLRLRDPVYGCM 120

Query: 119 GAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSSGAVTVAA 175
           GAIS LQ QV  LQ ELN V+ EI+KYKYREA++ + SS H    AL+SS + +++A
Sbjct: 121 GAISALQHQVHSLQTELNAVKAEILKYKYREAASTIISSSH---AALVSSESDSISA 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553357|ref|XP_002517720.1| LOB domain-containing protein, putative [Ricinus communis] gi|223543118|gb|EEF44652.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 135/184 (73%), Positives = 153/184 (83%), Gaps = 9/184 (4%)

Query: 1   MSRERERFDEIGKKIKREA---DASSHMGRRHMLGPP-GTLNTITPCAACKLLRRRCAQE 56
           MS +R+RFDEIGK   RE    DAS  MGRRH L PP G LNT+TPCAACKLLRRRCA+E
Sbjct: 1   MSTDRDRFDEIGKNFNREISDPDASPPMGRRHALTPPPGFLNTVTPCAACKLLRRRCAEE 60

Query: 57  CPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYG 116
           CPFSPYFSPHEP+KFA+VHKVFGASNVSKML +VP+SQRAD ANSLVYEAN+R+RDPVYG
Sbjct: 61  CPFSPYFSPHEPRKFAAVHKVFGASNVSKMLMEVPDSQRADTANSLVYEANLRIRDPVYG 120

Query: 117 CMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA-SNVMPSSHHPHQVALLSSGA-VTVA 174
           CMGAIS LQQQ+Q LQAEL  VR+EIIKYKYREA SN  PS+ H    AL+SSG+ +++ 
Sbjct: 121 CMGAISALQQQIQSLQAELTAVRSEIIKYKYREATSNFFPSTAHD---ALVSSGSLLSIT 177

Query: 175 AAPS 178
           A PS
Sbjct: 178 AEPS 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.968	0.973	0.662	1.7e-68
TAIR|locus:2065769	268	LBD13 "AT2G30340" [Arabidopsis	0.746	0.626	0.646	4.8e-58
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.497	0.651	0.642	1.1e-37
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.604	0.683	0.532	3.5e-36
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.546	0.637	0.596	4.4e-36
TAIR|locus:2046817	311	LBD10 "LOB domain-containing p	0.524	0.379	0.566	1.2e-33
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.52	0.735	0.572	5.2e-33
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.537	0.636	0.536	1.1e-32
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.542	0.389	0.544	2.3e-32
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.528	0.512	0.546	3.7e-32

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 153/231 (66%), Positives = 167/231 (72%)

Query:     1 MSRERERFDEIGKKIKREADASSHM--G-RRHMLGPPGTLNTITPCAACKLLRRRCAQEC 57
             MSRERERF+EIGKKIKREADA  H   G RR M GPPGTLNTITPCAACKLLRRRCAQEC
Sbjct:     1 MSRERERFEEIGKKIKREADAWPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQEC 60

Query:    58 PFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGC 117
             PFSPYFSPHEP KFASVHKVFGASNVSKML +VPESQRADAANSLVYEANVRLRDPVYGC
Sbjct:    61 PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGC 120

Query:   118 MGAISTLQQQVQCLQAELNVVRNEIIKYKYREA--SNVMPSSHHPHQVA-LLSSGAVTVA 174
             MGAIS LQQQVQ LQAEL  VR+EI+KYK REA  + ++PS+    QVA   +SG V+V 
Sbjct:   121 MGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNS---QVAGFHNSGGVSVI 177

Query:   175 AAXXXXXXXXXXXXXXXXXXXXXXXXMYAQPITSAADYSTISGNQNVSYFG 225
             A                         +++QP T   +Y  I    N  YFG
Sbjct:   178 APPPQRPTTPPQPTTAHPPSPSSC--VFSQPTTRDLEYGNIESENN--YFG 224

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2065769 LBD13 "AT2G30340" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
 Identities = 115/178 (64%), Positives = 136/178 (76%)

Query:     1 MSRERERFDEIG---KKIKREA---DASSH--MG-RRHMLGPPGT-LNTITPCAACKLLR 50
             MSRERE F E     KKIK++      + H  MG RRH+  PPGT LNT+TPCAACKLLR
Sbjct:     1 MSREREGFGEYYETVKKIKKDPAFETTTDHAVMGIRRHVAVPPGTTLNTVTPCAACKLLR 60

Query:    51 RRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRL 110
             RRCA+ECPFSPYFSPHEP KFA+VHKVFGASNVSKML +V ESQR DAANSLVYEAN+RL
Sbjct:    61 RRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRL 120

Query:   111 RDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHPHQVALLSS 168
             RDP+YGCMGAIS LQ  +Q LQ+EL  VR EI+++KY+EA+ +    ++ +     SS
Sbjct:   121 RDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITSLQNNFNSTTTTSS 178

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 72/112 (64%), Positives = 94/112 (83%)

Query:    41 TPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAAN 100
             +PCAACKLLRRRCAQ+C FSPYF   EPQKFA+VH+VFGASNV+KML ++P  QR DA +
Sbjct:    12 SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query:   101 SLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASN 152
             S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQA+L + + E++  + R+++N
Sbjct:    72 SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 123

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 74/139 (53%), Positives = 102/139 (73%)

Query:    38 NTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRAD 97
             +T +PCAACK LRR+C  EC F+PYF P +PQKFA+VHKVFGASNV+K+LN++  SQR D
Sbjct:     5 STNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRED 64

Query:    98 AANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSS 157
             A NSL YEA++RLRDPVYGC+G IS LQ Q++ LQ +L+  ++E+ KY   ++  ++ ++
Sbjct:    65 AVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY---QSLGILAAT 121

Query:   158 HHPHQVALLSSGAVTVAAA 176
             H    + LL+  A   A A
Sbjct:   122 HQSLGINLLAGAADGTATA 140

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 77/129 (59%), Positives = 96/129 (74%)

Query:    31 LGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDV 90
             +G PG+    +PCA+CKLLRRRCA++C F+PYF P +P KFA VHKVFGASNVSKML ++
Sbjct:     1 MGGPGS----SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQEL 56

Query:    91 PESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA 150
             P  QRADA NSLV+EAN R+RDPVYGC+GAIS LQ QV  LQ +L V + EI+  + +  
Sbjct:    57 PVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE 116

Query:   151 SNVMPSSHH 159
               +   SHH
Sbjct:   117 PTLQ--SHH 123

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2046817 LBD10 "LOB domain-containing protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 68/120 (56%), Positives = 87/120 (72%)

Query:    41 TPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAAN 100
             TPCAACKLLRR+C QEC F+PYF P  PQKF  VH+VFGASNV+K+LND+P  QR D  N
Sbjct:     4 TPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVN 63

Query:   101 SLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160
             SL YEA  R+RDP+YGC+G IS LQQ ++ +Q +L   + E++ Y   +A  V+P  + P
Sbjct:    64 SLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDA--VIPPPYLP 121

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 67/117 (57%), Positives = 86/117 (73%)

Query:    29 HMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLN 88
             H+ G   +  T +PCAACK LRR+C  +C F+PYF P EP KFA+VH++FGASNVSK+L+
Sbjct:    26 HLKGIYMSNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILH 85

Query:    89 DVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKY 145
             +V   QR DA NSL YEA  RL+DPVYGC+GAIS LQ+QV  LQ EL     ++++Y
Sbjct:    86 EVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRY 142

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 67/125 (53%), Positives = 91/125 (72%)

Query:    33 PPGTLN---TITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLND 89
             PP +L+    ++PCAACK+LRRRCA+ C  +PYF P +P KF   H+VFGASN+ K L +
Sbjct:    21 PPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQE 80

Query:    90 VPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYRE 149
             +PESQR DA NS+VYEA  R+RDPVYGC GAI  LQ+QV  LQA+L   + E++  +++ 
Sbjct:    81 LPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

Query:   150 ASNVM 154
              SN++
Sbjct:   141 -SNLL 144

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 68/125 (54%), Positives = 90/125 (72%)

Query:    41 TPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAAN 100
             +PCAACK LRR+C QEC F+PYF P +PQKFA VHKVFGASNV+K+LN++  +QR DA N
Sbjct:     6 SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query:   101 SLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREASNVMPSSHHP 160
             SL YEA  RLRDPVYGC+G IS LQ +++ +  +L   + E+  Y   +A  ++P    P
Sbjct:    66 SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQA--MLPILQ-P 122

Query:   161 HQVAL 165
             H ++L
Sbjct:   123 HFMSL 127

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 65/119 (54%), Positives = 85/119 (71%)

Query:    33 PPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPE 92
             PP     ++PCAACK+LRRRCA +C  +PYF P +P KF   H+VFGASN+ K L ++PE
Sbjct:    46 PPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPE 105

Query:    93 SQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREAS 151
             SQR DA NS+VYEA  R+RDPVYGC GAI  LQ+QV  LQA+L   + E++  + + +S
Sbjct:   106 SQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSS 164

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L5T5	LBD15_ARATH	No assigned EC number	0.6798	0.9822	0.9866	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	2e-52

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  164 bits (417), Expect = 2e-52
 Identities = 58/101 (57%), Positives = 78/101 (77%)

Query: 42  PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANS 101
           PCAACK LRR+C  +C  +PYF   +P +FA+VHK+FGASNV+K+L  +P  QR DA  S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 102 LVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEI 142
           L+YEA+ R RDPVYGC+G I +LQQQ++ LQAEL +V+ ++
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	96.64
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	92.14
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	91.17
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	85.18
PF09006	46	Surfac_D-trimer: Lung surfactant protein D coiled-	82.32
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	81.38

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.2e-49  Score=311.98  Aligned_cols=101  Identities=65%  Similarity=1.140  Sum_probs=99.7

Q ss_pred             CChhhhhhhcCCCCCCCCCCCCCCCChhhhHHHHHhhcchhHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHH
Q 027307           42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAI  121 (225)
Q Consensus        42 ~CAACK~lRRrC~~~C~fAPYFPad~~~rFa~vhKvFG~SNV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I  121 (225)
                      +|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 027307          122 STLQQQVQCLQAELNVVRNEI  142 (225)
Q Consensus       122 ~~Lq~QI~~lqaEL~~vr~eL  142 (225)
                      +.|||||+++++||+.+++||
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999886

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=96.64  E-value=0.0062  Score=55.11  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307          126 QQVQCLQAELNVVRNEIIKYKYREA  150 (225)
Q Consensus       126 ~QI~~lqaEL~~vr~eL~~~~~~~A  150 (225)
                      ++|..||.||..+|+||++....+.
T Consensus       122 qKIsALEdELs~LRaQIA~IV~~qe  146 (253)
T PF05308_consen  122 QKISALEDELSRLRAQIAKIVAAQE  146 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4688899999999999998876544

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.14  E-value=1.9  Score=39.16  Aligned_cols=69  Identities=19%  Similarity=0.226  Sum_probs=59.5

Q ss_pred             hHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027307           82 NVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIKYKYREA  150 (225)
Q Consensus        82 NV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~~~~~~A  150 (225)
                      |+..-|+......|+..+..||-|+-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+....-++
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~~   79 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGEA   79 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            444556777778999999999999999999999999999999999999999999999999988765433

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=91.17  E-value=0.43  Score=43.35  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 027307          117 CMGAISTLQQQVQCLQAELNVVR  139 (225)
Q Consensus       117 CvG~I~~Lq~QI~~lqaEL~~vr  139 (225)
                      ...-|..||.+|..|++||+++-
T Consensus       120 AlqKIsALEdELs~LRaQIA~IV  142 (253)
T PF05308_consen  120 ALQKISALEDELSRLRAQIAKIV  142 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999854

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=85.18  E-value=7.4  Score=35.43  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=57.0

Q ss_pred             hHHHHHhcCCCcchHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027307           82 NVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQAELNVVRNEIIK  144 (225)
Q Consensus        82 NV~kmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~QI~~lqaEL~~vr~eL~~  144 (225)
                      ++..-|+.+....|+.-++.||-|+=.|.=|-+|=-+-.|..+++=|++++++|+.++.+|..
T Consensus        11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q   73 (247)
T PF09849_consen   11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ   73 (247)
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445557778877899999999999999999999999999999999999999999999999866

>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46

Probab=82.32  E-value=3  Score=29.52  Aligned_cols=28  Identities=32%  Similarity=0.517  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027307          121 ISTLQQQVQCLQAELNVVRNEIIKYKYR  148 (225)
Q Consensus       121 I~~Lq~QI~~lqaEL~~vr~eL~~~~~~  148 (225)
                      |..|.+|+..|+.+|..+++-+..|+--
T Consensus         1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa   28 (46)
T PF09006_consen    1 INALRQQVEALQGQVQRLQAAFSQYKKA   28 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999864

It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=81.38  E-value=3  Score=41.36  Aligned_cols=7  Identities=14%  Similarity=0.235  Sum_probs=3.5

Q ss_pred             HHHhhhh
Q 027307          142 IIKYKYR  148 (225)
Q Consensus       142 L~~~~~~  148 (225)
                      |..|--+
T Consensus       199 L~~YVk~  205 (480)
T KOG2675|consen  199 LQAYVKE  205 (480)
T ss_pred             HHHHHHH
Confidence            5555443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	87.45

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=87.45  E-value=0.77  Score=29.08  Aligned_cols=29  Identities=31%  Similarity=0.532  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027307          119 GAISTLQQQVQCLQAELNVVRNEIIKYKY  147 (225)
Q Consensus       119 G~I~~Lq~QI~~lqaEL~~vr~eL~~~~~  147 (225)
                      |.|..|+|+|..++.|+++++-||+..++
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            67889999999999999999999987664

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00