Citrus Sinensis ID: 027346

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSKNRYTT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHcccccccccccccccccccccccccccccEEEEEEccccccccccHHcccEEEEEEccHHHHHHHHccccccccccccccEEEEEccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHccccccccccEEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccccccEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEccccccccHHHEEEEEEEEEHHHHHHHHHHcccHHHcccccEEEEEEcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHcHHHHHEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccccEEEc
Coil and Loop (DISEMBL)
magesdnprtedqtntknpnpseeeeleegeivgddessknstavmqqphplehswtfwfdnpfakskqatwgssmrsIYTFSSVEEFWSLYnnihhpsklavgadfycfknkiepkwedpvcanggkwtvifpkgksdtSWLYTLLAMIGeqfdhgdeICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIfhedakhdnrsknrytt
Flexible Loop (DISEMBL)
magesdnprtedqtntknpnpseeeelEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISlwtknasneaaQMSIGKQWKELLDYSDTIGFIfhedakhdnrsknrytt
Low Complexity Region (SEG)
MAGESDNPRTEDQTNTKNPNPSeeeeleegeIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSKNRYTT
Disordered region (IsUnstruct)
****************************************************EHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFH***************
Disordered Region (DISOPRED)
**************************************************PLEHSWTFWFD*PF***********MRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGF***************YTT
Disordered Region (DISEMBL)
************************************************PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHD*********
Disordered Region (DISPRO)
*********************************************MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHD*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSKNRYTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
O23252	235	Eukaryotic translation in	yes	no	0.830	0.791	0.752	4e-83
P48599	227	Eukaryotic translation in	yes	no	0.901	0.889	0.729	6e-83
O81481	218	Eukaryotic translation in	N/A	no	0.968	0.995	0.675	3e-82
P29557	215	Eukaryotic translation in	N/A	no	0.861	0.897	0.685	3e-78
Q9C7P6	240	Eukaryotic translation in	no	no	0.977	0.912	0.594	6e-78
Q9C7P2	240	Eukaryotic translation in	no	no	0.977	0.912	0.585	4e-77
Q03389	209	Eukaryotic translation in	N/A	no	0.785	0.842	0.556	5e-54
O81482	216	Eukaryotic translation in	N/A	no	0.785	0.814	0.544	5e-54
P48600	206	Eukaryotic translation in	no	no	0.776	0.844	0.534	3e-52
O04663	198	Eukaryotic translation in	no	no	0.785	0.888	0.5	3e-49

>sp|O23252|IF4E1_ARATH Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=1 SV=1

 Score =  307 bits (786), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 143/190 (75%), Positives = 165/190 (86%), Gaps = 4/190 (2%)

Query: 36  DESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNI 95
           DESSK+    + + HPLEHSWTFWFDNP  KSKQ +WGSS+R ++TFS+VEEFWSLYNN+
Sbjct: 49  DESSKSG---VPESHPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNM 105

Query: 96  HHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFD 155
            HPSKLA GADFYCFK+ IEPKWEDP+CANGGKWT+ FPK KSD SWLYTLLA+IGEQFD
Sbjct: 106 KHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFD 165

Query: 156 HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH- 214
           HGDEICGAVVN+R +QE+IS+WTKNASNEAAQ+SIGKQWKE LDY+++IGFI HEDAK  
Sbjct: 166 HGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNSIGFIIHEDAKKL 225

Query: 215 DNRSKNRYTT 224
           D  +KN YT 
Sbjct: 226 DRNAKNAYTA 235

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.
Arabidopsis thaliana (taxid: 3702)

>sp|P48599|IF4E1_ORYSJ Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1

 Score =  306 bits (785), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 148/203 (72%), Positives = 169/203 (83%), Gaps = 1/203 (0%)

Query: 23  EEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTF 82
           + +E EEGEI  DD       A    PHPLEH+WTFWFDNP  KSKQATWGSS+R I+TF
Sbjct: 25  DADEREEGEIADDDSGHAPPQANPAAPHPLEHAWTFWFDNPQGKSKQATWGSSIRPIHTF 84

Query: 83  SSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 142
           S+VE+FWSLYNNIHHPSKL VGADF+CFKNKIEPKWEDP+CANGGKWT    +GKSDT W
Sbjct: 85  STVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKSDTMW 144

Query: 143 LYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 202
           L+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKNA+NEAAQ+SIGKQWKE LDY D
Sbjct: 145 LHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKD 204

Query: 203 TIGFIFHEDAKH-DNRSKNRYTT 224
           +IGFI H+DAK  D   KNRYT 
Sbjct: 205 SIGFIVHDDAKKMDKGLKNRYTV 227

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81481|IF4E1_MAIZE Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1

 Score =  304 bits (778), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 152/225 (67%), Positives = 179/225 (79%), Gaps = 8/225 (3%)

Query: 1   MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           MA E+D  R     +   P P E+++ EEGEI  D   + +  A     HPLEHSWTFWF
Sbjct: 1   MAEETDT-RPASAGSRGRPAP-EDDDREEGEIT-DLACAPSPPAT----HPLEHSWTFWF 53

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           DNP +KSKQA WGSS+R I+TFS+VEEFW LYNNI+HPSKL VGADF+CFKNKIEPKWED
Sbjct: 54  DNPQSKSKQAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWED 113

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKN 180
           P+CANGGKWT+   +GKSDT WL+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKN
Sbjct: 114 PICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKN 173

Query: 181 ASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYTT 224
           A+NEAAQ+SIGKQWKELLDY D+IGFI H+DAK  D   K RYT 
Sbjct: 174 AANEAAQVSIGKQWKELLDYKDSIGFIVHDDAKKMDKGLKERYTV 218

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|P29557|IF4E1_WHEAT Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3

 Score =  291 bits (744), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 133/194 (68%), Positives = 160/194 (82%), Gaps = 1/194 (0%)

Query: 32  IVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSL 91
           I  D + S  + A     HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW L
Sbjct: 22  IADDGDGSSAAAAGRITAHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGL 81

Query: 92  YNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIG 151
           YNNIH+PSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+TLLAMIG
Sbjct: 82  YNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIG 141

Query: 152 EQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHED 211
           EQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI HED
Sbjct: 142 EQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHED 201

Query: 212 AKHDNRS-KNRYTT 224
           AK  ++  KNRYT 
Sbjct: 202 AKRSDKGPKNRYTV 215

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|Q9C7P6|IF4E3_ARATH Eukaryotic translation initiation factor 4E-3 OS=Arabidopsis thaliana GN=EIF4E3 PE=1 SV=1

 Score =  290 bits (742), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 139/234 (59%), Positives = 176/234 (75%), Gaps = 15/234 (6%)

Query: 1   MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDES---------SKNSTAVMQQPHP 51
           MA ++ +P T     T +P+P E+       I GD+++         SK ST V+Q+ H 
Sbjct: 12  MADQNIDPNT-----TTSPSPKEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHC 66

Query: 52  LEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFK 111
            ++SWTFWFDNP +KS Q  WGSS+RS+YTF ++EEFWSLYNNIH P+K   GAD YCFK
Sbjct: 67  FQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFK 126

Query: 112 NKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQ 171
           +KIEPKWEDP+CANGGKW+++FPK   + +WL TLLA++GEQFD GDEICGAV+N RAR 
Sbjct: 127 DKIEPKWEDPICANGGKWSMMFPKATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARG 186

Query: 172 EKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNR-SKNRYTT 224
           ++ISLWTKNA+NE AQ+SIGKQWKELL Y++TIGFI HEDAK  +R +K RYT 
Sbjct: 187 DRISLWTKNAANEEAQLSIGKQWKELLGYNETIGFIVHEDAKTLDRDAKRRYTV 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7P2|IF4E2_ARATH Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2

 Score =  287 bits (734), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 137/234 (58%), Positives = 175/234 (74%), Gaps = 15/234 (6%)

Query: 1   MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDES---------SKNSTAVMQQPHP 51
           MA ++ +P T     T +P+P E+       I GD+++         SK ST V+Q+ H 
Sbjct: 12  MADQNIDPNT-----TTSPSPIEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHC 66

Query: 52  LEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFK 111
            ++SWTFWFDNP +KS Q  WGSS+RS+YTF+++EEFWSLYNNIH P+K   G+D YCFK
Sbjct: 67  FQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDLYCFK 126

Query: 112 NKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQ 171
           +KIEPKWEDP+CANGGKWT+ FP+   +++WL TLLA++GEQFD GDEICGAV+N R R 
Sbjct: 127 DKIEPKWEDPICANGGKWTMFFPRATLESNWLNTLLALVGEQFDQGDEICGAVLNFRTRG 186

Query: 172 EKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNR-SKNRYTT 224
           ++ISLWTK A+NE AQ+SIGKQWKELL Y+DTIGFI HEDAK  +R +K RYT 
Sbjct: 187 DRISLWTKKAANEEAQLSIGKQWKELLGYNDTIGFIVHEDAKTLDRDAKRRYTV 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q03389|IF4E2_WHEAT Eukaryotic translation initiation factor isoform 4E-2 OS=Triticum aestivum PE=1 SV=1

 Score =  210 bits (535), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 99/178 (55%), Positives = 124/178 (69%), Gaps = 2/178 (1%)

Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH L+  WTFW+D        A WG+S++  YTF +VEEFW LY+ I  PSKL   ADF+
Sbjct: 32  PHKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFH 91

Query: 109 CFKNKIEPKWEDPVCANGGKWTVIFP-KGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
            FK  +EPKWEDP CANGGKWTVI   K   DT WL T +A+IGEQFD   EICG V +V
Sbjct: 92  LFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASV 151

Query: 168 RARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSK-NRYTT 224
           R RQ+K+SLWTK ASNEA Q+ IGK+WKE++DY+D + + FH+D++    S+  RYT 
Sbjct: 152 RQRQDKLSLWTKTASNEAVQVDIGKKWKEVIDYNDKMVYSFHDDSRSQKPSRGGRYTV 209

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|O81482|IF4E2_MAIZE Eukaryotic translation initiation factor isoform 4E-2 OS=Zea mays PE=2 SV=1

 Score =  210 bits (535), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 97/178 (54%), Positives = 128/178 (71%), Gaps = 2/178 (1%)

Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH L   WTFW+D        A WG+S++  YTF +VEEFWS+Y+ I  PSKL+  ADF+
Sbjct: 39  PHKLHRQWTFWYDIQTKTKSGAAWGTSLKKAYTFDTVEEFWSMYDQIFRPSKLSGNADFH 98

Query: 109 CFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
            FK  +EPKWEDP CANGGKWTV    K   +T WL TL+A+IGEQFD  ++ICG V +V
Sbjct: 99  LFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETLMALIGEQFDETEDICGIVASV 158

Query: 168 RARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSK-NRYTT 224
           RAR +K++LWT+ ASNEA Q++IGK+WK+++DY+D I + FH+D+K D  S+  RYT 
Sbjct: 159 RARGDKLALWTRTASNEAVQVNIGKKWKDVIDYNDKITYTFHDDSKRDKPSRGGRYTV 216

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|P48600|IF4E2_ORYSJ Eukaryotic translation initiation factor isoform 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 124/176 (70%), Gaps = 2/176 (1%)

Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH L   W FW+D        A WG+S+R  YTF +VEEFW LY+ I  PSK+ V ADF+
Sbjct: 29  PHKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFH 88

Query: 109 CFKNKIEPKWEDPVCANGGKWTVIFPKGKS-DTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
            FK  +EPKWEDP CANGGKWTV   +  + +  WL TL+A+IGEQFD  +EICG V +V
Sbjct: 89  LFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWLETLMALIGEQFDESEEICGVVASV 148

Query: 168 RARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSK-NRY 222
           R R +K++LWT+ ASNEA Q++IGK+WKE++DY+D + + FH+DAK +  S+  RY
Sbjct: 149 RQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDDAKREKPSRGGRY 204

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04663|IF4E4_ARATH Eukaryotic translation initiation factor isoform 4E OS=Arabidopsis thaliana GN=EIF(ISO)4E PE=1 SV=2

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/188 (50%), Positives = 124/188 (65%), Gaps = 12/188 (6%)

Query: 42  STAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKL 101
           +T   +QPH LE  W+FWFDN     K A WG+S+R  YTF +VE+FW L+  I   SKL
Sbjct: 18  ATEAEKQPHKLERKWSFWFDN--QSKKGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKL 75

Query: 102 AVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGD 158
              A+ + FK  +EPKWEDP CANGGKWT +    +    D  WL TL+A+IGEQFD  D
Sbjct: 76  TANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEAD 135

Query: 159 EICGAVVNVR--ARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDN 216
           EICG V +VR  ++Q+K+SLWT+  SNEA  M IGK+WKE+LD +D I F  H+D++   
Sbjct: 136 EICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWKEILDVTDKITFNNHDDSR--- 192

Query: 217 RSKNRYTT 224
             ++R+T 
Sbjct: 193 --RSRFTV 198

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Mediates susceptibility to Turnipmosaic potyvirus (TuMV) and Tobacco etch potyvirus (TEV).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
225462474	236	PREDICTED: eukaryotic translation initia	0.955	0.906	0.814	7e-96
405110161	231	eukaryotic translation initiation factor	0.946	0.917	0.769	3e-95
224114393	223	predicted protein [Populus trichocarpa]	0.928	0.932	0.772	3e-94
302171730	228	eukaryotic translation initiation factor	0.973	0.956	0.746	8e-93
48431257	228	eukaryotic translation initiation factor	0.955	0.938	0.761	1e-92
109629725	228	eukaryotic translation initiation factor	0.973	0.956	0.742	4e-92
356555482	233	PREDICTED: eukaryotic translation initia	0.959	0.922	0.743	7e-92
109629723	228	eukaryotic translation initiation factor	0.973	0.956	0.742	1e-91
224038406	236	eukaryotic translation initiation factor	0.937	0.889	0.762	2e-91
48431261	227	eukaryotic translation initiation factor	0.950	0.938	0.752	5e-90

>gi|225462474|ref|XP_002267488.1| PREDICTED: eukaryotic translation initiation factor 4E-1 [Vitis vinifera]

 Score =  355 bits (911), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 180/221 (81%), Positives = 195/221 (88%), Gaps = 7/221 (3%)

Query: 10  TEDQTNTKNPNP----SEEEELEEGEIVGDDESS--KNSTAVMQQPHPLEHSWTFWFDNP 63
           TEDQ +T NPNP     +EE+LEEGEIV DD S+  K S A+  QPHPLEHSWTFWFDNP
Sbjct: 15  TEDQGSTHNPNPRPHGDDEEDLEEGEIVVDDASASLKQSAAITHQPHPLEHSWTFWFDNP 74

Query: 64  FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
            AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDPVC
Sbjct: 75  SAKSKQAAWGSSMRPIYTFSNVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPVC 134

Query: 124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASN 183
           ANGGKWTV F KGKSDT WLYTLLAMIGEQFDHGDEICGAV+NVRARQEKI+LWTKNASN
Sbjct: 135 ANGGKWTVTFAKGKSDTCWLYTLLAMIGEQFDHGDEICGAVINVRARQEKIALWTKNASN 194

Query: 184 EAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 223
           EAAQ+SIGKQWKE LDYS++IGFIFHEDAK  D  +KNRYT
Sbjct: 195 EAAQLSIGKQWKEFLDYSESIGFIFHEDAKKLDRAAKNRYT 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|405110161|emb|CCM43797.1| eukaryotic translation initiation factor 4E [Arachis hypogaea]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 170/221 (76%), Positives = 194/221 (87%), Gaps = 9/221 (4%)

Query: 10  TEDQTNTKNPNPSEEEELEEGEIVGDDESS------KNSTAVMQQPHPLEHSWTFWFDNP 63
           T+DQ  T NPN +E E+LEEGEI+ DD+SS       +S A+ + PHPLE+SWTFWFDNP
Sbjct: 12  TDDQI-TANPN-NENEDLEEGEILDDDDSSATSRPPSSSGALARNPHPLENSWTFWFDNP 69

Query: 64  FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
            AKSKQA WGSS+R IYTF++VEEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDP+C
Sbjct: 70  SAKSKQAAWGSSIRPIYTFATVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPIC 129

Query: 124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASN 183
           ANGGKWT+ FP+GKSDTSWLYTLL MIGEQFDHGDEICGAVVNVR RQEKI+LWTKNA+N
Sbjct: 130 ANGGKWTMTFPRGKSDTSWLYTLLGMIGEQFDHGDEICGAVVNVRNRQEKIALWTKNAAN 189

Query: 184 EAAQMSIGKQWKELLDYSDTIGFIFHEDA-KHDNRSKNRYT 223
           EAAQ+SIGKQWKE LDY+DTIGFIFHEDA KHD  +KN+Y 
Sbjct: 190 EAAQVSIGKQWKEFLDYNDTIGFIFHEDAKKHDRAAKNKYV 230

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114393|ref|XP_002316746.1| predicted protein [Populus trichocarpa] gi|118489143|gb|ABK96378.1| unknown [Populus trichocarpa x Populus deltoides] gi|222859811|gb|EEE97358.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 163/211 (77%), Positives = 189/211 (89%), Gaps = 3/211 (1%)

Query: 17  KNPNPSEEEELEEGEIV--GDDESS-KNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWG 73
           K PNP+ E++LEEGEIV  GDD+SS K S ++  QPHPLEH WTFWFDNP AKSKQA+WG
Sbjct: 13  KTPNPNTEDDLEEGEIVAGGDDDSSLKKSVSLPYQPHPLEHQWTFWFDNPSAKSKQASWG 72

Query: 74  SSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIF 133
           SS+RSI+TFS++EEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDP+CANGGKW+V  
Sbjct: 73  SSLRSIFTFSTIEEFWSVYNNIHHPSKLAVGADFHCFKDKIEPKWEDPICANGGKWSVTL 132

Query: 134 PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQ 193
            KGKSDT WL TLLA+IGEQFDHGDEICGAVV+VRARQEKI++WTKNASNE AQ+SIGKQ
Sbjct: 133 SKGKSDTFWLNTLLALIGEQFDHGDEICGAVVSVRARQEKIAIWTKNASNETAQVSIGKQ 192

Query: 194 WKELLDYSDTIGFIFHEDAKHDNRSKNRYTT 224
           WKE LDY++TIGFIFH+DAK D  +KNRY+ 
Sbjct: 193 WKEFLDYNETIGFIFHDDAKKDRNAKNRYSV 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302171730|gb|ADK97766.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  345 bits (885), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 168/225 (74%), Positives = 190/225 (84%), Gaps = 7/225 (3%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+SWTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENSWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKN 180
           P+CANGGKWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKN
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKN 183

Query: 181 ASNEAAQMSIGKQWKELLDYSDTIGFIFHEDA-KHDNRSKNRYTT 224
           ASNEAAQ+SIGKQWKE LDY++T+GFIFH+DA K D  +KN+Y  
Sbjct: 184 ASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48431257|gb|AAR04332.2| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/218 (76%), Positives = 187/218 (85%), Gaps = 4/218 (1%)

Query: 10  TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKS 67
           T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+SWTFWFD P AKS
Sbjct: 12  TDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENSWTFWFDTPAAKS 70

Query: 68  KQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG 127
           KQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWEDP+CANGG
Sbjct: 71  KQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGG 130

Query: 128 KWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQ 187
           KWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKNASNEAAQ
Sbjct: 131 KWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQ 190

Query: 188 MSIGKQWKELLDYSDTIGFIFHEDA-KHDNRSKNRYTT 224
           +SIGKQWKE LDY++T+GFIFH+DA K D  +KN+Y  
Sbjct: 191 VSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109629725|gb|ABG35117.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  343 bits (879), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 167/225 (74%), Positives = 189/225 (84%), Gaps = 7/225 (3%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+ WTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENPWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKN 180
           P+CANGGKWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKN
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKN 183

Query: 181 ASNEAAQMSIGKQWKELLDYSDTIGFIFHEDA-KHDNRSKNRYTT 224
           ASNEAAQ+SIGKQWKE LDY++T+GFIFH+DA K D  +KN+Y  
Sbjct: 184 ASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555482|ref|XP_003546060.1| PREDICTED: eukaryotic translation initiation factor 4E-1-like [Glycine max]

 Score =  342 bits (877), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 165/222 (74%), Positives = 194/222 (87%), Gaps = 7/222 (3%)

Query: 10  TEDQTNTKNPNPS-EEEELEEGEIV--GDDESSKNS---TAVMQQPHPLEHSWTFWFDNP 63
           TEDQ  ++  N + ++E+LEEGEI   GDD +S  S   +A+++ PHPLE+SWTFWFDNP
Sbjct: 12  TEDQNPSRVANDNNDDEDLEEGEIPDDGDDGASATSKPPSALVRNPHPLENSWTFWFDNP 71

Query: 64  FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
            AKSKQA WGSS+R IYTF++VEEFWS+YNNIHHPSKL VGADF+CFK+KIEPKWEDP+C
Sbjct: 72  SAKSKQAAWGSSIRPIYTFATVEEFWSIYNNIHHPSKLGVGADFHCFKHKIEPKWEDPIC 131

Query: 124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASN 183
           ANGGKWT+ F +GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR+RQEKI++WTKNASN
Sbjct: 132 ANGGKWTMTFQRGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRSRQEKIAIWTKNASN 191

Query: 184 EAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNR-SKNRYTT 224
           EAAQ+SIGKQWKE LDY+DTIGFIFHEDAK  +R +KN+Y  
Sbjct: 192 EAAQVSIGKQWKEFLDYNDTIGFIFHEDAKKLDRGAKNKYVV 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109629723|gb|ABG35116.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 167/225 (74%), Positives = 188/225 (83%), Gaps = 7/225 (3%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE SWTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLESSWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKN 180
           P+CANGGKWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV  R EKIS+WTKN
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVGGRAEKISIWTKN 183

Query: 181 ASNEAAQMSIGKQWKELLDYSDTIGFIFHEDA-KHDNRSKNRYTT 224
           ASNEAAQ+SIGKQWKE LDY++T+GFIFH+DA K D  +KN+Y  
Sbjct: 184 ASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224038406|gb|ACN38307.1| eukaryotic translation initiation factor 4e [Carica papaya]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/215 (76%), Positives = 182/215 (84%), Gaps = 5/215 (2%)

Query: 15  NTKNPNPSEEEELEEGEI----VGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQA 70
           NT NPN     + E+       + D++ SK S+AV+ QPHPLEH WTFWFDN  AKSKQA
Sbjct: 22  NTANPNSRPRGDEEDEGPEEGEIVDEDESKRSSAVLLQPHPLEHPWTFWFDNFSAKSKQA 81

Query: 71  TWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT 130
           TWGSSMRS+YTF +VEEFWSLYNNIHHPSKLAVGADFYCFK+KIEPKWEDPVCANGGKWT
Sbjct: 82  TWGSSMRSVYTFRTVEEFWSLYNNIHHPSKLAVGADFYCFKHKIEPKWEDPVCANGGKWT 141

Query: 131 VIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSI 190
           + F +GKSDT WLYTLLAMIGEQFDHGDEICG VVNVR RQEKI+LWTKNA+NEAAQMSI
Sbjct: 142 MNFQRGKSDTCWLYTLLAMIGEQFDHGDEICGVVVNVRGRQEKIALWTKNAANEAAQMSI 201

Query: 191 GKQWKELLDYSDTIGFIFHEDAKHDNR-SKNRYTT 224
           GKQWKE LDY+DT+GFIFHEDAK   R +KNRY+ 
Sbjct: 202 GKQWKEFLDYNDTMGFIFHEDAKKLERAAKNRYSV 236

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48431261|gb|AAT44122.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  336 bits (861), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 164/218 (75%), Positives = 185/218 (84%), Gaps = 5/218 (2%)

Query: 10  TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKS 67
           T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+SWTFWFD P AKS
Sbjct: 12  TDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENSWTFWFDTPAAKS 70

Query: 68  KQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG 127
           KQ  WGS MR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWEDP+CANGG
Sbjct: 71  KQPDWGS-MRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGG 129

Query: 128 KWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQ 187
           KWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKNASNEAAQ
Sbjct: 130 KWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQ 189

Query: 188 MSIGKQWKELLDYSDTIGFIFHEDA-KHDNRSKNRYTT 224
           +SIGKQWKE LDY++T+GFIFH+DA K D  +KN+Y  
Sbjct: 190 VSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 227

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2117647	235	EIF4E "AT4G18040" [Arabidopsis	0.825	0.787	0.756	1.1e-80
TAIR|locus:2013748	240	AT1G29550 [Arabidopsis thalian	0.946	0.883	0.608	4e-74
UNIPROTKB|Q03389	209	Q03389 "Eukaryotic translation	0.781	0.837	0.559	1.9e-53
TAIR|locus:2165892	198	LSP1 "LOSS OF SUSCEPTIBILITY T	0.758	0.858	0.531	8.5e-49
DICTYBASE|DDB_G0268574	250	eIF4e "eukaryotic translation	0.977	0.876	0.356	1.3e-36
ZFIN|ZDB-GENE-050417-398	230	eif4e1c "eukaryotic translatio	0.763	0.743	0.431	7.2e-36
UNIPROTKB|F1PSC3	217	EIF4E "Uncharacterized protein	0.758	0.783	0.434	4e-35
UNIPROTKB|D6RBW1	245	EIF4E "Eukaryotic translation	0.906	0.828	0.384	5.1e-35
UNIPROTKB|P06730	217	EIF4E "Eukaryotic translation	0.758	0.783	0.428	1.3e-34
UNIPROTKB|P48597	213	eif4e "Eukaryotic translation	0.758	0.798	0.423	1.3e-34

TAIR|locus:2117647 EIF4E "AT4G18040" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 143/189 (75%), Positives = 165/189 (87%)

Query:    36 DESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNI 95
             DESSK+    + + HPLEHSWTFWFDNP  KSKQ +WGSS+R ++TFS+VEEFWSLYNN+
Sbjct:    49 DESSKSG---VPESHPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNM 105

Query:    96 HHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFD 155
              HPSKLA GADFYCFK+ IEPKWEDP+CANGGKWT+ FPK KSD SWLYTLLA+IGEQFD
Sbjct:   106 KHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFD 165

Query:   156 HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH- 214
             HGDEICGAVVN+R +QE+IS+WTKNASNEAAQ+SIGKQWKE LDY+++IGFI HEDAK  
Sbjct:   166 HGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNSIGFIIHEDAKKL 225

Query:   215 DNRSKNRYT 223
             D  +KN YT
Sbjct:   226 DRNAKNAYT 234

GO:0000339 "RNA cap binding" evidence=TAS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009615 "response to virus" evidence=IMP

TAIR|locus:2013748 AT1G29550 [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 135/222 (60%), Positives = 167/222 (75%)

Query:    12 DQTNTKNPNPSXXXXXXXXXIVGDDES---------SKNSTAVMQQPHPLEHSWTFWFDN 62
             D   T +P+P          I GD+++         SK ST V+Q+ H  ++SWTFWFDN
Sbjct:    18 DPNTTTSPSPKEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHCFQNSWTFWFDN 77

Query:    63 PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV 122
             P +KS Q  WGSS+RS+YTF ++EEFWSLYNNIH P+K   GAD YCFK+KIEPKWEDP+
Sbjct:    78 PSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPI 137

Query:   123 CANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNAS 182
             CANGGKW+++FPK   + +WL TLLA++GEQFD GDEICGAV+N RAR ++ISLWTKNA+
Sbjct:   138 CANGGKWSMMFPKATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARGDRISLWTKNAA 197

Query:   183 NEAAQMSIGKQWKELLDYSDTIGFIFHEDAKH-DNRSKNRYT 223
             NE AQ+SIGKQWKELL Y++TIGFI HEDAK  D  +K RYT
Sbjct:   198 NEEAQLSIGKQWKELLGYNETIGFIVHEDAKTLDRDAKRRYT 239

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

UNIPROTKB|Q03389 Q03389 "Eukaryotic translation initiation factor isoform 4E-2" [Triticum aestivum (taxid:4565)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 99/177 (55%), Positives = 124/177 (70%)

Query:    49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
             PH L+  WTFW+D        A WG+S++  YTF +VEEFW LY+ I  PSKL   ADF+
Sbjct:    32 PHKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFH 91

Query:   109 CFKNKIEPKWEDPVCANGGKWTVIFP-KGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
              FK  +EPKWEDP CANGGKWTVI   K   DT WL T +A+IGEQFD   EICG V +V
Sbjct:    92 LFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASV 151

Query:   168 RARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSKN-RYT 223
             R RQ+K+SLWTK ASNEA Q+ IGK+WKE++DY+D + + FH+D++    S+  RYT
Sbjct:   152 RQRQDKLSLWTKTASNEAVQVDIGKKWKEVIDYNDKMVYSFHDDSRSQKPSRGGRYT 208

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2165892 LSP1 "LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 94/177 (53%), Positives = 120/177 (67%)

Query:    42 STAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKL 101
             +T   +QPH LE  W+FWFDN     K A WG+S+R  YTF +VE+FW L+  I   SKL
Sbjct:    18 ATEAEKQPHKLERKWSFWFDNQ--SKKGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKL 75

Query:   102 AVGADFYCFKNKIEPKWEDPVCANGGKWT-VIFPKGKS--DTSWLYTLLAMIGEQFDHGD 158
                A+ + FK  +EPKWEDP CANGGKWT V+    K   D  WL TL+A+IGEQFD  D
Sbjct:    76 TANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEAD 135

Query:   159 EICGAVVNVR--ARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAK 213
             EICG V +VR  ++Q+K+SLWT+  SNEA  M IGK+WKE+LD +D I F  H+D++
Sbjct:   136 EICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWKEILDVTDKITFNNHDDSR 192

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS;TAS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0050687 "negative regulation of defense response to virus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=TAS

GO:0009615 "response to virus" evidence=IMP

DICTYBASE|DDB_G0268574 eIF4e "eukaryotic translation initiation factor 4E" [Dictyostelium discoideum (taxid:44689)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 81/227 (35%), Positives = 119/227 (52%)

Query:     4 ESDNPRTEDQTNTKNP-NPSXXXXXXXXXIVGDDESSKNSTAVMQQP-----HPLEHSWT 57
             E+ N  +E  T T N  N               D+ +K      + P     HPL++ W+
Sbjct:    22 ENKNVTSETTTTTNNTQNKETETTDNINKEETADKENKEEQQQEENPENLIKHPLQNRWS 81

Query:    58 FWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPK 117
              W+D    K     W  S++ + +F SVE+FW ++NN+ + S L  G+ ++ FK+ IEPK
Sbjct:    82 LWYDYQSGKINPEHWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSSYHLFKDDIEPK 141

Query:   118 WEDPVCANGGKWTVIFP-KGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISL 176
             WE      GGKW V+   K + D  WL +++A +GE FD  DEICG V N R   +KIS+
Sbjct:   142 WEHESNKRGGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVYNSRKNGDKISV 201

Query:   177 WTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNR-SKNRY 222
             WTK A +E A   +G   K++L+   TI +  HED    ++ SKN Y
Sbjct:   202 WTKTAQDEKATRDVGNCLKKILEIDQTIQYTPHEDFIRSSKGSKNLY 248

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-050417-398 eif4e1c "eukaryotic translation initiation factor 4E family member 1c" [Danio rerio (taxid:7955)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 79/183 (43%), Positives = 111/183 (60%)

Query:    50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
             HPL++ W  W+   F   K  +W  ++R I  F +VE+FW+LYN+I  PSKL  G D+  
Sbjct:    50 HPLQNRWALWY---FKNDKSKSWTENLRLISKFDTVEDFWALYNHIQQPSKLGFGCDYCL 106

Query:   110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQFDHGDE-ICGAV 164
             FK+ I+P WED     GG+W +   K +     D  W+ TLL +IGE FD   E +CGAV
Sbjct:   107 FKDGIKPMWEDDRNKLGGRWLMTLSKQQRHNDLDRYWMETLLCLIGESFDEASEDVCGAV 166

Query:   165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY-SDT-IGFIFHED--AKHDNRSKN 220
             VNVR + +KI++WT N  N  A M+IG+Q+KE L   S T IG+  H+D  +K  + +KN
Sbjct:   167 VNVRPKGDKIAIWTGNCQNRDAIMTIGQQYKERLSLPSKTLIGYQSHDDTSSKSGSTTKN 226

Query:   221 RYT 223
              Y+
Sbjct:   227 MYS 229

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1PSC3 EIF4E "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 79/182 (43%), Positives = 107/182 (58%)

Query:    50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
             HPL++SW  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct:    37 HPLQNSWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93

Query:   110 FKNKIEPKWEDPVCANGGKWTVIFPKG--KSDTS--WLYTLLAMIGEQFD-HGDEICGAV 164
             FK+ IEP WED     GG+W +   K   +SD    WL TLL +IGE FD + D++CGAV
Sbjct:    94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153

Query:   165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDA--KHDNRSKN 220
             VNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KN
Sbjct:   154 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 213

Query:   221 RY 222
             R+
Sbjct:   214 RF 215

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

UNIPROTKB|D6RBW1 EIF4E "Eukaryotic translation initiation factor 4E" [Homo sapiens (taxid:9606)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 85/221 (38%), Positives = 117/221 (52%)

Query:    11 EDQTNTKNPNPSXXXXXXXXXIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQA 70
             E Q  T  PNP              ++   N    ++  HPL++ W  WF   F   K  
Sbjct:    32 ESQETTPTPNPPTTEEEKTES----NQEVANPEHYIK--HPLQNRWALWF---FKNDKSK 82

Query:    71 TWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT 130
             TW +++R I  F +VE+FW+LYN+I   S L  G D+  FK+ IEP WED     GG+W 
Sbjct:    83 TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWL 142

Query:   131 VIFPKG--KSDTS--WLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEA 185
             +   K   +SD    WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  
Sbjct:   143 ITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRE 202

Query:   186 AQMSIGKQWKELLDYSD--TIGFIFHEDA--KHDNRSKNRY 222
             A   IG+ +KE L       IG+  H D   K  + +KNR+
Sbjct:   203 AVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRF 243

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|P06730 EIF4E "Eukaryotic translation initiation factor 4E" [Homo sapiens (taxid:9606)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 78/182 (42%), Positives = 106/182 (58%)

Query:    50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
             HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct:    37 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93

Query:   110 FKNKIEPKWEDPVCANGGKWTVIFPKG--KSDTS--WLYTLLAMIGEQFD-HGDEICGAV 164
             FK+ IEP WED     GG+W +   K   +SD    WL TLL +IGE FD + D++CGAV
Sbjct:    94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153

Query:   165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDA--KHDNRSKN 220
             VNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KN
Sbjct:   154 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 213

Query:   221 RY 222
             R+
Sbjct:   214 RF 215

GO:0006417 "regulation of translation" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IMP

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000339 "RNA cap binding" evidence=TAS

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0016442 "RNA-induced silencing complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|P48597 eif4e "Eukaryotic translation initiation factor 4E" [Xenopus laevis (taxid:8355)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 77/182 (42%), Positives = 106/182 (58%)

Query:    50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
             HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct:    33 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMSGCDYSL 89

Query:   110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQFD-HGDEICGAV 164
             FK+ IEP WED     GG+W +   K +     D  WL TL+ +IGE FD H D++CGAV
Sbjct:    90 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRNDLDRFWLETLMCLIGESFDEHSDDVCGAV 149

Query:   165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHEDA--KHDNRSKN 220
             VNVRA+ +KI++WT    N+ A   IG+ +KE L       IG+  H D   K  + +KN
Sbjct:   150 VNVRAKGDKIAIWTTEFENKDAVTHIGRVYKERLGLPAKVVIGYQSHADTATKSGSTTKN 209

Query:   221 RY 222
             R+
Sbjct:   210 RF 211

GO:0005515 "protein binding" evidence=IPI

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0043234 "protein complex" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23252	IF4E1_ARATH	No assigned EC number	0.7526	0.8303	0.7914	yes	no
Q75AV8	IF4E_ASHGO	No assigned EC number	0.375	0.8125	0.8625	yes	no
O81481	IF4E1_MAIZE	No assigned EC number	0.6755	0.9687	0.9954	N/A	no
P29557	IF4E1_WHEAT	No assigned EC number	0.6855	0.8616	0.8976	N/A	no
P48599	IF4E1_ORYSJ	No assigned EC number	0.7290	0.9017	0.8898	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam01652	162	pfam01652, IF4E, Eukaryotic initiation factor 4E	8e-83
COG5053	217	COG5053, CDC33, Translation initiation factor 4E (	4e-36
PTZ00040	233	PTZ00040, PTZ00040, translation initiation factor	1e-15

>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E

 Score =  243 bits (622), Expect = 8e-83
 Identities = 81/162 (50%), Positives = 108/162 (66%), Gaps = 3/162 (1%)

Query: 51  PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCF 110
           PL++ WT W+D      K   +  +++ I TF +VE+FW LYNNI  PSKL +G+D++ F
Sbjct: 1   PLQNKWTLWYDRRPPGDKSKDYEDNLKPIGTFDTVEDFWRLYNNIPRPSKLPLGSDYHLF 60

Query: 111 KNKIEPKWEDPVCANGGKWTVIFPKG-KSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
           K  I+P WEDP   NGGKWT+  PK    D  W   LLA+IGEQFD  DEICG V++VR 
Sbjct: 61  KKGIKPMWEDPANKNGGKWTIRLPKSQNLDRFWEELLLALIGEQFDESDEICGVVLSVRK 120

Query: 170 RQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFH 209
           +++KIS+WTKNASNE A + IGK+ KE+L    +D I +  H
Sbjct: 121 KEDKISVWTKNASNEEALLRIGKKLKEVLGLPPNDKIEYKPH 162

Length = 162

>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

 Score =  126 bits (317), Expect = 4e-36
 Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 12/214 (5%)

Query: 19  PNPSEEEELEEGEIVGDDESSKNSTAVMQQP-----HPLEHSWTFWFDNPFAKSKQATWG 73
            +  E  +  E  +  D  +    T +         HPL   WT WF  P  +    +W 
Sbjct: 1   MSTEEVSKKFEENVSVDPTTKTPRTVLSDSAHFMNKHPLAFHWTLWFLKP-PEDGLESWS 59

Query: 74  SSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIF 133
             ++SI TF +VEEFW + +NI   S+L   +D+  F+  I P+WED    NGGKW+   
Sbjct: 60  DLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMNGGKWSFQL 119

Query: 134 PKGKSDT---SWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMS 189
                D     WL TLLA IGE  D  G EI G V N+R    K+++WT+N +N+    +
Sbjct: 120 KGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGA 179

Query: 190 IGKQWKELLDYSD--TIGFIFHEDAKHDNRSKNR 221
           IG ++K++L+ SD  T+ +  HE +K  +     
Sbjct: 180 IGNEFKQVLELSDVETLEYKAHESSKLGSYHAKT 213

Length = 217

>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 29/189 (15%)

Query: 37  ESSKNSTAVMQQPHPLEHSWTFW---FDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYN 93
           E  + +   +  P PL + W  W         KS    +    + + +F SV++FW L+ 
Sbjct: 25  ELFEETKIPLSTPLPLSYKWVIWEQVVKETIRKSND--YKDYTKPLASFDSVQKFWQLWF 82

Query: 94  NIHHPSKLAVGADF---------------YCFKNKIEPKWEDPVCANGGK-----WTVIF 133
           NI  PS+L  G                    FK+ I+P WEDP+ A GG      W    
Sbjct: 83  NIPQPSELLTGKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDV 142

Query: 134 PKGKSDTSWLYTLLAMIGEQFDHGDEICGA----VVNVRARQEKISLWTKNASNEAAQMS 189
             G+ D  W   +LA+IG   +H   I G      ++ R    +I +W  N  +++ +  
Sbjct: 143 SPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNLGDQSDRNQ 202

Query: 190 IGKQWKELL 198
           + K+ +  +
Sbjct: 203 LMKEIETCM 211

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG1670	212	consensus Translation initiation factor 4F, cap-bi	100.0
PF01652	165	IF4E: Eukaryotic initiation factor 4E; InterPro: I	100.0
PTZ00040	233	translation initiation factor E4; Provisional	100.0
KOG1669	208	consensus Predicted mRNA cap-binding protein relat	100.0
COG5053	217	CDC33 Translation initiation factor 4E (eIF-4E) [T	100.0
PF08939	243	DUF1917: Domain of unknown function (DUF1917); Int	96.53

>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-61  Score=410.75  Aligned_cols=177  Identities=51%  Similarity=0.960  Sum_probs=167.8

Q ss_pred             CCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCC
Q 027346           45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA  124 (224)
Q Consensus        45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~  124 (224)
                      ....+|||++.|||||.++.++   ..|++.|+.|.+|+|||+||++|++|++||+|+.+|+|+|||+||+||||||+|+
T Consensus        30 ~~~~~hpL~~~WTlW~l~~d~~---ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~  106 (212)
T KOG1670|consen   30 ENHIKHPLQNNWTLWFLKNDRN---KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANK  106 (212)
T ss_pred             ccccccccccceeEEeecCCcc---ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCcccc
Confidence            3457999999999999988754   3899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecC---CChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCC
Q 027346          125 NGGKWTVIFPK---GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS  201 (224)
Q Consensus       125 nGG~w~i~~~k---~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~  201 (224)
                      +||||+|.+++   +.+|.+|+++||+||||+|+++++|||+|+++|++++|||||++++.++..++.||..||++|+++
T Consensus       107 ~GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~~~l~IG~~~Ke~L~~~  186 (212)
T KOG1670|consen  107 NGGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEEAVLRIGRVLKEVLGLP  186 (212)
T ss_pred             CCCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchHHHHHHHHHHHHHhCCC
Confidence            99999999986   458999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -CeeeEEEccccc--cCCCCCceeeC
Q 027346          202 -DTIGFIFHEDAK--HDNRSKNRYTT  224 (224)
Q Consensus       202 -~~i~f~~H~~s~--~~~~~~~~~~~  224 (224)
                       .+|+|+.|.++.  .+|++|++|++
T Consensus       187 ~~~i~y~~H~ds~~k~~s~~K~~~tv  212 (212)
T KOG1670|consen  187 RDVIGYQLHKDSSKKSGSTAKNRYTV  212 (212)
T ss_pred             cceEEEEechhhHhhcCCcccceecC
Confidence             799999999998  78899999985

>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs

Probab=100.00  E-value=1.3e-51  Score=341.29  Aligned_cols=159  Identities=48%  Similarity=0.902  Sum_probs=147.2

Q ss_pred             CCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCCCcEEE
Q 027346           51 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT  130 (224)
Q Consensus        51 pL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~nGG~w~  130 (224)
                      ||+++|||||+......+..+|.++|++|++|+|||+||++|++|++|++|+.+++|+|||+||+||||||+|++||+|+
T Consensus         1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~   80 (165)
T PF01652_consen    1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWI   80 (165)
T ss_dssp             EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEE
T ss_pred             CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEE
Confidence            89999999999655445568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCC---ChHHHHHHHHHHHhcCCCCCC-CceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC--ee
Q 027346          131 VIFPKG---KSDTSWLYTLLAMIGEQFDHG-DEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TI  204 (224)
Q Consensus       131 i~~~k~---~~d~~W~~lll~~IGe~f~~~-~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~--~i  204 (224)
                      |++++.   .++++|++|||++|||+|+.. ++|||||+|+|++.++|+||++++++++.+.+|++.|+++|+++.  .|
T Consensus        81 i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~~~i~~~i~~~l~~~~~~~~  160 (165)
T PF01652_consen   81 IRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQNRIGKKIKEILNLPPNTKI  160 (165)
T ss_dssp             EEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHHHHHHHHHHHHHTTTTTSEE
T ss_pred             EEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCHHHHHHHHHHHHHHhCcCCCCeE
Confidence            999998   899999999999999999865 899999999999999999999999888889999999999999874  69


Q ss_pred             eEEEc
Q 027346          205 GFIFH  209 (224)
Q Consensus       205 ~f~~H  209 (224)
                      +|++|
T Consensus       161 ~y~~H  165 (165)
T PF01652_consen  161 EYKSH  165 (165)
T ss_dssp             EEEEH
T ss_pred             EEecC
Confidence            99998

eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....

>PTZ00040 translation initiation factor E4; Provisional

Probab=100.00  E-value=2.5e-50  Score=350.92  Aligned_cols=165  Identities=28%  Similarity=0.557  Sum_probs=144.9

Q ss_pred             CCCCCCCCcceEEEEECCCCc-ccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCce---------------EEE
Q 027346           46 MQQPHPLEHSWTFWFDNPFAK-SKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGAD---------------FYC  109 (224)
Q Consensus        46 ~~~~hpL~~~Wt~W~~~~~~~-~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~---------------~~l  109 (224)
                      ...+|||+++|||||+.+... .+..+|.++|++|++|+|||+||++|+||++||+|+.+++               |||
T Consensus        34 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~l  113 (233)
T PTZ00040         34 LSTPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMI  113 (233)
T ss_pred             cCCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeee
Confidence            467899999999999977543 3457899999999999999999999999999999998874               999


Q ss_pred             ecCCCccCCCCCCCCCCcEEEEEecC-----CChHHHHHHHHHHHhcCCCCCCCceeeEEE----EecCCCcEEEEecCC
Q 027346          110 FKNKIEPKWEDPVCANGGKWTVIFPK-----GKSDTSWLYTLLAMIGEQFDHGDEICGAVV----NVRARQEKISLWTKN  180 (224)
Q Consensus       110 FK~gI~P~WEDp~N~nGG~w~i~~~k-----~~~d~~W~~lll~~IGe~f~~~~~I~Gvvv----s~R~~~~~IsIW~~~  180 (224)
                      ||+||+||||||+|++||+|+|++.+     ..+|++|++|||++|||+|+.+++||||||    |+|++.+||+||+++
T Consensus       114 FK~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~  193 (233)
T PTZ00040        114 FKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTN  193 (233)
T ss_pred             ecCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCC
Confidence            99999999999999999999999965     347999999999999999998999999996    677888999999999


Q ss_pred             CCCHHHHHHHHHHHHHHcC--C------CCeeeEEEcc
Q 027346          181 ASNEAAQMSIGKQWKELLD--Y------SDTIGFIFHE  210 (224)
Q Consensus       181 ~~~~~~~~~I~~~lk~~L~--~------~~~i~f~~H~  210 (224)
                      +++++.+.+|++.++++|.  +      ++.+.-++|.
T Consensus       194 ~~d~~~~~~i~~~i~~~l~~~l~~~~~~~~~~~~~~h~  231 (233)
T PTZ00040        194 LGDQSDRNQLMKEIETCMARRLDGSSGFPPKFDLKSHS  231 (233)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCcceecCCcceeeccc
Confidence            9999888999999998762  2      2345566665

>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.5e-50  Score=332.61  Aligned_cols=172  Identities=37%  Similarity=0.716  Sum_probs=162.7

Q ss_pred             CCCCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCC
Q 027346           43 TAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV  122 (224)
Q Consensus        43 ~~~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~  122 (224)
                      .+.....|||++..+|||.........++|++++++|++|.|||+||++|.||+.|+.|+...++||||+||+|+|||++
T Consensus        23 ~v~~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~a  102 (208)
T KOG1669|consen   23 RVLMDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKA  102 (208)
T ss_pred             ccCCCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcC
Confidence            33466789999999999997766556789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC
Q 027346          123 CANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD  202 (224)
Q Consensus       123 N~nGG~w~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~  202 (224)
                      |.|||+|+|+++|+.+.++||+|||+++||+|..+++|||.|+|+|.++++||||+|+.++.....+|++.||.+|++++
T Consensus       103 N~nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta~~~~irdtLk~~L~lp~  182 (208)
T KOG1669|consen  103 NCNGGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTADTGRIRDTLKRVLELPF  182 (208)
T ss_pred             CCCCCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcchhHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             --eeeEEEcccccc
Q 027346          203 --TIGFIFHEDAKH  214 (224)
Q Consensus       203 --~i~f~~H~~s~~  214 (224)
                        .++|+.|.+++.
T Consensus       183 ~~vmeYK~H~~~Lr  196 (208)
T KOG1669|consen  183 NTVMEYKNHDDSLR  196 (208)
T ss_pred             ceEEEecchhhhhh
Confidence              699999999983

>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.6e-45  Score=306.44  Aligned_cols=170  Identities=39%  Similarity=0.759  Sum_probs=155.8

Q ss_pred             CCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCC
Q 027346           45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA  124 (224)
Q Consensus        45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~  124 (224)
                      -++..|||+..|||||..+... ..+.|.+.|+.|++|+|||+||+++++|+.++.||..++|++||+||+|+|||++|.
T Consensus        32 ~f~~~hpl~~~wtlw~l~p~e~-g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~  110 (217)
T COG5053          32 HFMNKHPLAFHWTLWFLKPPED-GLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANM  110 (217)
T ss_pred             hHhhcCccccceEEEEecCCcc-chhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccC
Confidence            3678999999999999987653 245599999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCC---ChHHHHHHHHHHHhcCCCCC-CCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346          125 NGGKWTVIFPKG---KSDTSWLYTLLAMIGEQFDH-GDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY  200 (224)
Q Consensus       125 nGG~w~i~~~k~---~~d~~W~~lll~~IGe~f~~-~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~  200 (224)
                      +||+|.+.++..   ..+++|..+|+++||++|+. +.+|||||++.|++++||+||++++.+.+.+.+|+.++|.+|++
T Consensus       111 ~Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl~~ig~efk~vl~l  190 (217)
T COG5053         111 NGGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVLEL  190 (217)
T ss_pred             CCCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHHHHHHHHHHHhcccc
Confidence            999999999874   37899999999999999974 77899999999999999999999999999999999999999998


Q ss_pred             C--CeeeEEEccccccC
Q 027346          201 S--DTIGFIFHEDAKHD  215 (224)
Q Consensus       201 ~--~~i~f~~H~~s~~~  215 (224)
                      .  ..|+|+.|..++.+
T Consensus       191 s~~~tle~k~heSsk~g  207 (217)
T COG5053         191 SDVETLEYKAHESSKLG  207 (217)
T ss_pred             cceeEEEeccccccccc
Confidence            6  47999999855554

>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins

Probab=96.53  E-value=0.021  Score=50.71  Aligned_cols=80  Identities=20%  Similarity=0.340  Sum_probs=56.1

Q ss_pred             CCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCceeeEEEEe------cCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027346          124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV------RARQEKISLWTKNASNEAAQMSIGKQWKEL  197 (224)
Q Consensus       124 ~nGG~w~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~------R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~  197 (224)
                      .-.|+|+|-++...+|.+|..+.-+++.+.|.     +++-|+.      ..+...|.|.+.|..+...+.++.+.|+++
T Consensus       148 v~sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV~RVl~~Lr~~  222 (243)
T PF08939_consen  148 VTSGKWMLFPPPDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDVMRVLRRLREL  222 (243)
T ss_dssp             ---EEEEEEE-TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHHHHHHHHHHHT
T ss_pred             cccceeEEEcCHHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            34899999999999999999999999988773     2444444      123478999999999999999999999776


Q ss_pred             cCCCC----eeeEEEc
Q 027346          198 LDYSD----TIGFIFH  209 (224)
Q Consensus       198 L~~~~----~i~f~~H  209 (224)
                       ++-.    .|.||+-
T Consensus       223 -gl~~~~~~~i~YK~D  237 (243)
T PF08939_consen  223 -GLVDPDGRPIYYKPD  237 (243)
T ss_dssp             -T--S-----EEEEEH
T ss_pred             -CCccccccceeecCc
Confidence             6544    6899874

; PDB: 1ZTP_B 2Q4K_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2wmc_A	178	Crystal Structure Of Eukaryotic Initiation Factor 4		2e-86
2idr_A	177	Crystal Structure Of Translation Initiation Factor		2e-77
2idv_A	177	Crystal Structure Of Wheat C113s Mutant Eif4e Bound		3e-76
2w97_B	217	Crystal Structure Of Eif4e Bound To Glycerol And Ei		2e-35
4axg_A	248	Structure Of Eif4e-Cup Complex Length = 248		3e-35
1ipb_A	217	Crystal Structure Of Eukaryotic Initiation Factor 4		7e-35
4dt6_A	240	Co-Crystal Structure Of Eif4e With Inhibitor Length		7e-35
1wkw_A	191	Crystal Structure Of The Ternary Complex Of Eif4e-M		9e-35
1ej1_A	190	Cocrystal Structure Of The Messenger Rna 5' Cap-Bin		1e-34
3m93_A	189	Complex Crystal Structure Of Ascaris Suum Eif4e-3 W		3e-32
2jgb_A	195	Structure Of Human Eif4e Homologous Protein 4ehp Wi		6e-31
3hxg_A	189	Crystal Structure Of Schistsome Eif4e Complexed Wit		1e-28
1ap8_A	213	Translation Initiation Factor Eif4e In Complex With		2e-28
1rf8_A	213	Solution Structure Of The Yeast Translation Initiat		2e-27
4b6v_A	207	The Third Member Of The Eif4e Family Represses Gene		2e-22

>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum Length = 178

Iteration: 1
 Score =  314 bits (804), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 160/178 (89%), Gaps = 1/178 (0%)
Query: 48  QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADF 107
            PH LE+SWTFWFD P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADF
Sbjct: 1   MPHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 108 YCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
           YCFK+KIEPKWEDP+CANGGKWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV
Sbjct: 61  YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 120
Query: 168 RARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDA-KHDNRSKNRYTT 224
           R R EKIS+WTKNASNEAAQ+SIGKQWKE LDY++T+GFIFH+DA K D  +KN+Y  
Sbjct: 121 RGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 178

>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e From Wheat Length = 177

Iteration: 1
 Score =  284 bits (727), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 154/176 (87%), Gaps = 1/176 (0%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
           FKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR 
Sbjct: 62  FKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121
Query: 170 RQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRS-KNRYTT 224
           +QE++++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI HEDAK  ++  KNRYT 
Sbjct: 122 KQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYTV 177

>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7- Methyl-Gdp Length = 177

Iteration: 1
 Score =  280 bits (717), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 128/176 (72%), Positives = 153/176 (86%), Gaps = 1/176 (0%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
           FKNKIEPKWEDP+ ANGGKWT+   +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR 
Sbjct: 62  FKNKIEPKWEDPISANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121
Query: 170 RQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRS-KNRYTT 224
           +QE++++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI HEDAK  ++  KNRYT 
Sbjct: 122 KQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYTV 177

>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 106/184 (57%), Gaps = 12/184 (6%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F K K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 37  HPLQNRWALWF---FKKDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 94  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
           VNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KN
Sbjct: 154 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 213
Query: 221 RYTT 224
           R+  
Sbjct: 214 RFVV 217

>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 10/181 (5%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL + WT W+       +  +W      I +F +VE+FWSLYN+I  PS++ +G+D+  
Sbjct: 70  HPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 126
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGDEICGAVVN 166
           FK  I P WED     GG+W +   K      D  WL  LL +IGE FDH D+ICGAV+N
Sbjct: 127 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVIN 186
Query: 167 VRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKNRY 222
           +R +  KIS+WT + +NE A + IG + ++ L    ++++ +  H+D   K  +  K+ Y
Sbjct: 187 IRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIY 246
Query: 223 T 223
           T
Sbjct: 247 T 247

>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 37  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 94  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
           VNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KN
Sbjct: 154 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 213
Query: 221 RYTT 224
           R+  
Sbjct: 214 RFVV 217

>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 60  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 116
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 117 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 176
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
           VNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KN
Sbjct: 177 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 236
Query: 221 RYTT 224
           R+  
Sbjct: 237 RFVV 240

>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191

Iteration: 1
 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 11  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 67
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 68  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 127
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
           VNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KN
Sbjct: 128 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 187
Query: 221 RYTT 224
           R+  
Sbjct: 188 RFVV 191

>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 10  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 66
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 67  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 126
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
           VNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KN
Sbjct: 127 VNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 186
Query: 221 RYTT 224
           R+  
Sbjct: 187 RFVV 190

>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 100/170 (58%), Gaps = 10/170 (5%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL+  W  W+       +   W   ++ +  F +VE+FWSLYN+I   S L  G+D+Y 
Sbjct: 3   HPLQCHWALWY---LKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK  I+P WED     GG+W V+  K K     D  WL  L+A+IGEQF D+G+ ICGAV
Sbjct: 60  FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAV 119
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDT--IGFIFHEDA 212
           VNVR + +K+SLWT+++  +   + IG+  K  L+  DT  I +  H+D+
Sbjct: 120 VNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDS 169

>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp Length = 195

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 4/160 (2%)
Query: 44  AVMQQP--HPLEHSWTFWFDN--PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPS 99
           AV+  P  HPL++++TFW+    P   +   ++  +++ I TF+SVE+FW  Y+++  P 
Sbjct: 7   AVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPG 66
Query: 100 KLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDE 159
            L   +DF+ FK  I+P WED    NGGKW +   KG +   W   +LAM+GEQF  G+E
Sbjct: 67  DLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEE 126
Query: 160 ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLD 199
           ICGAVV+VR +++ IS+W K AS++A    I    + +L+
Sbjct: 127 ICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLN 166

>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PHPL+ SW+++    F   K   W   +  + TFS++E+FWS+  +   P ++  G D Y
Sbjct: 9   PHPLQDSWSYYL---FQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 109 CFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTLLAMIGEQFDHGDE---ICGAV 164
            FK+ I PKWEDP   NGG+W + +  +   D  W   L+ +IG  +D  +E   ICGAV
Sbjct: 66  MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRSKNR 221
              R+R  K+S+W  + + E   +SIG++ KE L+  DTI F        D RS+ R
Sbjct: 126 FQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDTIYF----QPVSDQRSQTR 178

>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL   WT W+  P A  K  +W   +R + +F +VEEFW++  NI  P +L + +D++ 
Sbjct: 37  HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGD-EICGAVV 165
           F+N + P+WED   A GGKW+    +GK    D  WL TLLA+IGE  D  D +I G V+
Sbjct: 96  FRNDVRPEWEDEANAKGGKWSFQL-RGKGADIDELWLRTLLAVIGETIDEDDSQINGVVL 154
Query: 166 NVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 202
           ++R    K +LWTK+   E   + IG ++K++L  +D
Sbjct: 155 SIRKGGNKFALWTKSEDKEPL-LRIGGKFKQVLKLTD 190

>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL   WT W+  P A  K  +W   +R + +F +VEEFW++  NI  P +L + +D++ 
Sbjct: 37  HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTV-IFPKGKS-DTSWLYTLLAMIGEQFDHGD-EICGAVVN 166
           F+N + P+WED   A GGKW+  +  KG   D  WL TLLA+IGE  D  D +I G V++
Sbjct: 96  FRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIGETIDEDDSQINGVVLS 155
Query: 167 VRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD 202
           +R    K +LWTK    E   + IG ++K++L  +D
Sbjct: 156 IRKGGNKFALWTKCEDKEPL-LRIGGKFKQVLKLTD 190

>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 51  PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCF 110
           PL   WTFW D     +  A   S+++ IYT  +V+ FWS+YNNI   + L +   ++  
Sbjct: 31  PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLM 90
Query: 111 KNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFD----HGDEICGAVVN 166
           + +  P WE+   A GG W +  PK  + T W   LLA IGEQF       DEI G  V+
Sbjct: 91  RGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVS 150
Query: 167 VRARQEKISLWTKNAS 182
           VR R++ + +W  NAS
Sbjct: 151 VRDREDVVQVWNVNAS 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	2e-74
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	5e-61
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	1e-58
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	2e-58
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	4e-58
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	6e-58
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	2e-56

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177

 Score =  222 bits (566), Expect = 2e-74
 Identities = 129/175 (73%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61

Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
           FKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR 
Sbjct: 62  FKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121

Query: 170 RQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDAKHDNRS-KNRYT 223
           +QE++++WTKNA+NEAAQ+SIGKQWKE LDY D+IGFI HEDAK  ++  KNRYT
Sbjct: 122 KQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYT 176

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189

 Score =  188 bits (479), Expect = 5e-61
 Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 11/189 (5%)

Query: 43  TAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLA 102
               + PHPL+ SW+++        K   W   +  + TFS++E+FWS+  +   P ++ 
Sbjct: 3   LGSPEFPHPLQDSWSYYLFQF---RKALDWDECLEKVATFSTIEDFWSVLTHTVRPREIT 59

Query: 103 VGADFYCFKNKIEPKWEDPVCANGGKWTVIFP-KGKSDTSWLYTLLAMIGEQFD---HGD 158
            G D Y FK+ I PKWEDP   NGG+W +    +   D  W   L+ +IG  +D      
Sbjct: 60  YGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDR 119

Query: 159 EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIFHEDA----KH 214
           +ICGAV   R+R  K+S+W  + + E   +SIG++ KE L+  DTI F    D     + 
Sbjct: 120 QICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDTIYFQPVSDQRSQTRG 179

Query: 215 DNRSKNRYT 223
            +    +Y 
Sbjct: 180 SDICTGKYE 188

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195

 Score =  182 bits (463), Expect = 1e-58
 Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 6/182 (3%)

Query: 48  QPHPLEHSWTFWFD--NPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGA 105
             HPL++++TFW+    P   +   ++  +++ I TF+SVE+FW  Y+++  P  L   +
Sbjct: 13  AEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHS 72

Query: 106 DFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVV 165
           DF+ FK  I+P WED    NGGKW +   KG +   W   +LAM+GEQF  G+EICGAVV
Sbjct: 73  DFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVV 132

Query: 166 NVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD--TIGFIFHED--AKHDNRSKNR 221
           +VR +++ IS+W K AS++A    I    + +L+      + +  H D           R
Sbjct: 133 SVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGPQR 192

Query: 222 YT 223
             
Sbjct: 193 LL 194

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190

 Score =  181 bits (461), Expect = 2e-58
 Identities = 76/185 (41%), Positives = 104/185 (56%), Gaps = 12/185 (6%)

Query: 48  QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADF 107
             HPL++ W  WF       K  TW +++R I  F +VE+FW+LYN+I   S L  G D+
Sbjct: 8   IKHPLQNRWALWFFKN---DKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 64

Query: 108 YCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICG 162
             FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CG
Sbjct: 65  SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 124

Query: 163 AVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRS 218
           AVVNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +
Sbjct: 125 AVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTT 184

Query: 219 KNRYT 223
           KNR+ 
Sbjct: 185 KNRFV 189

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217

 Score =  182 bits (462), Expect = 4e-58
 Identities = 79/217 (36%), Positives = 112/217 (51%), Gaps = 12/217 (5%)

Query: 16  TKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSS 75
           T  P  +        E    + + + +       HPL++ W  WF       K  TW ++
Sbjct: 3   TVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKN---DKSKTWQAN 59

Query: 76  MRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPK 135
           +R I  F +VE+FW+LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K
Sbjct: 60  LRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNK 119

Query: 136 GKS----DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSI 190
            +     D  WL TLL +IGE F D+ D++CGAVVNVRA+ +KI++WT    N  A   I
Sbjct: 120 QQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHI 179

Query: 191 GKQWKELLDY--SDTIGFIFHED--AKHDNRSKNRYT 223
           G+ +KE L       IG+  H D   K  + +KNR+ 
Sbjct: 180 GRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFV 216

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189

 Score =  180 bits (458), Expect = 6e-58
 Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 12/184 (6%)

Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL+  W  W+       +   W   ++ +  F +VE+FWSLYN+I   S L  G+D+Y 
Sbjct: 3   HPLQCHWALWYLKA---DRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59

Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQ-FDHGDEICGAV 164
           FK  I+P WED     GG+W V+  K K     D  WL  L+A+IGEQ  D+G+ ICGAV
Sbjct: 60  FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAV 119

Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHEDAKHDNRS--KN 220
           VNVR + +K+SLWT+++  +   + IG+  K  L+   ++ I +  H+D+     S  K 
Sbjct: 120 VNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDSSVRTGSMVKP 179

Query: 221 RYTT 224
           R   
Sbjct: 180 RIVI 183

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213

 Score =  177 bits (450), Expect = 2e-56
 Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 8/214 (3%)

Query: 15  NTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGS 74
           + +  +   EE +   +     ++  + +A     HPL   WT W+  P A  K  +W  
Sbjct: 2   SVEEVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKP-AVDKSESWSD 60

Query: 75  SMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP 134
            +R + +F +VEEFW++  NI  P +L + +D++ F+N + P+WED   A GGKW+    
Sbjct: 61  LLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLR 120

Query: 135 KGKSDTS--WLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIG 191
              +D    WL TLLA+IGE  D    +I G V+++R    K +LWTK+   E   + IG
Sbjct: 121 GKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKE-PLLRIG 179

Query: 192 KQWKELLDYSD--TIGFIFHEDAKHDNRSKNRYT 223
            ++K++L  +D   + F  H  A +    +   T
Sbjct: 180 GKFKQVLKLTDDGHLEFFPHSSA-NGRHPQPSIT 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	100.0
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	100.0
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	100.0
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	100.0
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	100.0
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	100.0
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	100.0
4axg_A	248	Eukaryotic translation initiation factor 4E; 4E-BP	100.0
1ztp_A	251	Basophilic leukemia expressed protein BLES03; HS.4	99.52

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*

Probab=100.00  E-value=4.3e-61  Score=403.16  Aligned_cols=176  Identities=74%  Similarity=1.323  Sum_probs=167.5

Q ss_pred             CCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCCCcE
Q 027346           49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK  128 (224)
Q Consensus        49 ~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~nGG~  128 (224)
                      +|||+++|||||+.+..+.+..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||+
T Consensus         1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~   80 (177)
T 2idr_A            1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGK   80 (177)
T ss_dssp             CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEE
T ss_pred             CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCE
Confidence            59999999999998876556789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeeeEEE
Q 027346          129 WTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSDTIGFIF  208 (224)
Q Consensus       129 w~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~~i~f~~  208 (224)
                      |+|+++|+.+|++|++|||+||||+|+.+++|||||+|+|+++++|+||++++++++.+..|++.|+++|+++..++|++
T Consensus        81 w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~~~y~~  160 (177)
T 2idr_A           81 WTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIV  160 (177)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCSCCEEEE
T ss_pred             EEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            99999999999999999999999999988999999999999999999999999999889999999999999988899999


Q ss_pred             ccccc-cCCCCCceeeC
Q 027346          209 HEDAK-HDNRSKNRYTT  224 (224)
Q Consensus       209 H~~s~-~~~~~~~~~~~  224 (224)
                      |.++. .++++|++|+|
T Consensus       161 H~d~~~~~~~~k~~~~~  177 (177)
T 2idr_A          161 HEDAKRSDKGPKNRYTV  177 (177)
T ss_dssp             GGGGGSCSSSCCCSEEC
T ss_pred             chhhhhcCCCCccceEC
Confidence            99998 45678999986

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*

Probab=100.00  E-value=2.6e-59  Score=403.63  Aligned_cols=176  Identities=42%  Similarity=0.826  Sum_probs=164.3

Q ss_pred             CCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCC
Q 027346           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (224)
Q Consensus        46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~n  125 (224)
                      ....|||+++|||||+.+..   ..+|.++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++
T Consensus        33 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~  109 (217)
T 1ipb_A           33 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR  109 (217)
T ss_dssp             GTSCCEEEEEEEEEEECCCT---TSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTT
T ss_pred             cccCCCCCCeEEEEEEeCCc---ccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            45789999999999998752   578999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCC----hHHHHHHHHHHHhcCCC-CCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346          126 GGKWTVIFPKGK----SDTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY  200 (224)
Q Consensus       126 GG~w~i~~~k~~----~d~~W~~lll~~IGe~f-~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~  200 (224)
                      ||+|+|++++..    +|.+|++|||+||||+| +.+++|||||||+|+++++|+||++++++++.+..|++.|+++|++
T Consensus       110 GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l  189 (217)
T 1ipb_A          110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGL  189 (217)
T ss_dssp             CEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence            999999999864    59999999999999999 6788999999999999999999999999998899999999999999


Q ss_pred             CC--eeeEEEccccc--cCCCCCceeeC
Q 027346          201 SD--TIGFIFHEDAK--HDNRSKNRYTT  224 (224)
Q Consensus       201 ~~--~i~f~~H~~s~--~~~~~~~~~~~  224 (224)
                      ++  .|+|++|.++.  .+|.+|++|+|
T Consensus       190 ~~~~~i~y~~H~d~~~~~~s~~~~~~~~  217 (217)
T 1ipb_A          190 PPKIVIGYQSHADTATKSGSTTKNRFVV  217 (217)
T ss_dssp             CTTCCCEEEEGGGCCCSTTCCCCCSEEC
T ss_pred             CCCCeEEEEEchHhhhccCCCCceeeeC
Confidence            75  69999999998  56778999986

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*

Probab=100.00  E-value=1.2e-58  Score=398.44  Aligned_cols=177  Identities=35%  Similarity=0.768  Sum_probs=163.8

Q ss_pred             CCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCC
Q 027346           45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA  124 (224)
Q Consensus        45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~  124 (224)
                      ....+|||+++|||||+.+.. .+..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus        32 ~~~~~hpL~~~Wt~W~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~  110 (213)
T 1ap8_A           32 HFDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANA  110 (213)
T ss_dssp             CCCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTT
T ss_pred             CCCCccccCCcEEEEEEcCCc-ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCC
Confidence            455899999999999998864 3467899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEec-C-CChHHHHHHHHHHHhcCCCCCCC-ceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCC
Q 027346          125 NGGKWTVIFP-K-GKSDTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYS  201 (224)
Q Consensus       125 nGG~w~i~~~-k-~~~d~~W~~lll~~IGe~f~~~~-~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~  201 (224)
                      +||||+|+++ + ..+|.+|++|||++|||+|+.++ +|||||+|+|+++++|+||++++ +++.+..|++.||++|+++
T Consensus       111 ~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~~~~Ig~~lk~~L~l~  189 (213)
T 1ap8_A          111 KGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE-DKEPLLRIGGKFKQVLKLT  189 (213)
T ss_dssp             TSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS-CHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC-CHHHHHHHHHHHHHHhCCC
Confidence            9999999984 3 47899999999999999998766 89999999999999999999998 8888999999999999995


Q ss_pred             --CeeeEEEccccccCCCCCceeeC
Q 027346          202 --DTIGFIFHEDAKHDNRSKNRYTT  224 (224)
Q Consensus       202 --~~i~f~~H~~s~~~~~~~~~~~~  224 (224)
                        ..++|++|.++.. +++|++|++
T Consensus       190 ~~~~i~y~~H~d~~~-~~~k~~~~~  213 (213)
T 1ap8_A          190 DDGHLEFFPHSSANG-RHPQPSITL  213 (213)
T ss_dssp             SSCCCEEECGGGGGC-CCSCCSEEC
T ss_pred             CCCeEEEEEchhhhc-ccCccceEC
Confidence              4799999999986 888999986

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*

Probab=100.00  E-value=7.9e-59  Score=393.18  Aligned_cols=174  Identities=39%  Similarity=0.814  Sum_probs=160.1

Q ss_pred             CCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCCCc
Q 027346           48 QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG  127 (224)
Q Consensus        48 ~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~nGG  127 (224)
                      .+|||+++|||||+.+.   ...+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus         1 ~~HpL~~~Wt~W~~~~~---~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GG   77 (189)
T 3m94_A            1 MRHPLQCHWALWYLKAD---RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGG   77 (189)
T ss_dssp             CCCEEEEEEEEEEECCC---SSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred             CCCCCCCcEEEEEECCC---CccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCC
Confidence            37999999999998764   257899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCC----ChHHHHHHHHHHHhcCCCC-CCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC
Q 027346          128 KWTVIFPKG----KSDTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD  202 (224)
Q Consensus       128 ~w~i~~~k~----~~d~~W~~lll~~IGe~f~-~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~  202 (224)
                      +|+|++++.    .+|.+|++|||++|||+|+ .+++|||||||+|+++++|+||++++++++.+..|++.||++|+++.
T Consensus        78 kw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~Ig~~lk~~L~l~~  157 (189)
T 3m94_A           78 RWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPD  157 (189)
T ss_dssp             EEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCT
T ss_pred             EEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCcCC
Confidence            999999875    3699999999999999995 68999999999999999999999999999899999999999999974


Q ss_pred             --eeeEEEccccc--cCCCCCceeeC
Q 027346          203 --TIGFIFHEDAK--HDNRSKNRYTT  224 (224)
Q Consensus       203 --~i~f~~H~~s~--~~~~~~~~~~~  224 (224)
                        .|+|++|.+++  .+|++|++|+|
T Consensus       158 ~~~i~y~~H~d~~~~~~s~~k~~~~v  183 (189)
T 3m94_A          158 TEPIRYEVHKDSSVRTGSMVKPRIVI  183 (189)
T ss_dssp             TSCEEEEECC-----CCSCCCCSEEE
T ss_pred             CCEEEEEEchHhhhccCCCCceEEEE
Confidence              69999999997  78889999985

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*

Probab=100.00  E-value=4.6e-59  Score=394.78  Aligned_cols=176  Identities=42%  Similarity=0.825  Sum_probs=158.4

Q ss_pred             CCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCC
Q 027346           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (224)
Q Consensus        46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~n  125 (224)
                      ...+|||+++|||||+.+.+   ..+|.++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++
T Consensus         6 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~   82 (190)
T 1l8b_A            6 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR   82 (190)
T ss_dssp             ---CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTT
T ss_pred             ccccCCCCCeEEEEEEcCCC---ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            45789999999999998753   468999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCC----hHHHHHHHHHHHhcCCC-CCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346          126 GGKWTVIFPKGK----SDTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY  200 (224)
Q Consensus       126 GG~w~i~~~k~~----~d~~W~~lll~~IGe~f-~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~  200 (224)
                      ||+|+|++++..    +|.+|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++.+..|++.|+++|++
T Consensus        83 GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l  162 (190)
T 1l8b_A           83 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGL  162 (190)
T ss_dssp             CEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCC
Confidence            999999998753    59999999999999999 5688999999999999999999999999998899999999999999


Q ss_pred             CC--eeeEEEccccc--cCCCCCceeeC
Q 027346          201 SD--TIGFIFHEDAK--HDNRSKNRYTT  224 (224)
Q Consensus       201 ~~--~i~f~~H~~s~--~~~~~~~~~~~  224 (224)
                      ++  .|+|++|.+++  .+|.+|++|++
T Consensus       163 ~~~~~~~y~~H~d~~~~~~~~~~~~~~~  190 (190)
T 1l8b_A          163 PPKIVIGYQSHADTATKSGSTTKNRFVV  190 (190)
T ss_dssp             CTTSCCEEEEHHHHHTC-----CCSEEC
T ss_pred             CCCCeEEEEEcHHHHhccCCCCceeeeC
Confidence            64  69999999988  56778999986

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*

Probab=100.00  E-value=4.5e-59  Score=394.67  Aligned_cols=177  Identities=31%  Similarity=0.680  Sum_probs=163.2

Q ss_pred             CCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCC
Q 027346           45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA  124 (224)
Q Consensus        45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~  124 (224)
                      .+...|||+++|||||+.+..   ..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus         5 ~~~~~HpL~~~Wt~W~~~~~~---~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~   81 (189)
T 3hxi_A            5 SPEFPHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNE   81 (189)
T ss_dssp             --CCCCEEEEEEEEEEECCCT---TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHH
T ss_pred             CCCccCCCCCeEEEEEECCCC---ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCC
Confidence            356789999999999997753   36899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCC-ChHHHHHHHHHHHhcCCC-CCCCc--eeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346          125 NGGKWTVIFPKG-KSDTSWLYTLLAMIGEQF-DHGDE--ICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY  200 (224)
Q Consensus       125 nGG~w~i~~~k~-~~d~~W~~lll~~IGe~f-~~~~~--I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~  200 (224)
                      +||+|+|++++. .+|.+|++|||++|||+| +.+++  |||||+|+|+++++|+||++++++++.+..|++.||++|++
T Consensus        82 ~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l  161 (189)
T 3hxi_A           82 NGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLEL  161 (189)
T ss_dssp             TCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHHHHHHHHHHHHHTC
T ss_pred             CCcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCc
Confidence            999999999997 589999999999999999 55667  99999999999999999999999998899999999999999


Q ss_pred             CC--eeeEEEccccc--cCCCCCceeeC
Q 027346          201 SD--TIGFIFHEDAK--HDNRSKNRYTT  224 (224)
Q Consensus       201 ~~--~i~f~~H~~s~--~~~~~~~~~~~  224 (224)
                      ++  .|+|++|++++  .+|.++++|+|
T Consensus       162 ~~~~~i~y~~H~d~~~~~~s~~~~~~~~  189 (189)
T 3hxi_A          162 EDTIYFQPVSDQRSQTRGSDICTGKYEI  189 (189)
T ss_dssp             CSCCEEEEHHHHHHCCTTCC-CCCSEEC
T ss_pred             CCCCeEEEEEchhhhhcCCCCCCceEeC
Confidence            85  49999999987  66778999986

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A

Probab=100.00  E-value=8.7e-58  Score=388.39  Aligned_cols=169  Identities=37%  Similarity=0.733  Sum_probs=158.4

Q ss_pred             CCCCCCCCCcceEEEEECCCC--cccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCC
Q 027346           45 VMQQPHPLEHSWTFWFDNPFA--KSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV  122 (224)
Q Consensus        45 ~~~~~hpL~~~Wt~W~~~~~~--~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~  122 (224)
                      +....|||+++|||||+....  +.+..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus        10 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~   89 (195)
T 2jgb_A           10 PGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA   89 (195)
T ss_dssp             CCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTT
T ss_pred             CCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCC
Confidence            346789999999999997532  224578999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC
Q 027346          123 CANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD  202 (224)
Q Consensus       123 N~nGG~w~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~  202 (224)
                      |++||+|+|++++..+|++|++|||+||||+|+.+++|||||+|+|.++++|+||++++++++.+..|++.|+++|++++
T Consensus        90 N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~  169 (195)
T 2jgb_A           90 NKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPP  169 (195)
T ss_dssp             TTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHCCCCT
T ss_pred             CCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999889999999999999864


Q ss_pred             --eeeEEEccccc
Q 027346          203 --TIGFIFHEDAK  213 (224)
Q Consensus       203 --~i~f~~H~~s~  213 (224)
                        .|+|++|++++
T Consensus       170 ~~~~~y~~H~d~~  182 (195)
T 2jgb_A          170 NTIMEYKTHTDSI  182 (195)
T ss_dssp             TCCEEEEEHHHHH
T ss_pred             CCeEEEEEchHhh
Confidence              69999999998

>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}

Probab=100.00  E-value=3.3e-57  Score=397.36  Aligned_cols=178  Identities=38%  Similarity=0.824  Sum_probs=163.2

Q ss_pred             CCCCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCC
Q 027346           44 AVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC  123 (224)
Q Consensus        44 ~~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N  123 (224)
                      +....+|||+++|||||+.+..   ..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|
T Consensus        64 ~~~~~kHpL~~~WtlW~~~~~~---~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N  140 (248)
T 4axg_A           64 TEHLYKHPLMNVWTLWYLENDR---SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAAN  140 (248)
T ss_dssp             --CCCCCEEEEEEEEEEESCSC---CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTT
T ss_pred             cccccCCCCCCeEEEEEeeCCC---ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccC
Confidence            3456789999999999997643   4689999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEecCCC---hHHHHHHHHHHHhcCCCCCCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCC
Q 027346          124 ANGGKWTVIFPKGK---SDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY  200 (224)
Q Consensus       124 ~nGG~w~i~~~k~~---~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~  200 (224)
                      ++||+|+|++.+..   +|++|++|||+||||+|+.+++|||||+|+|+++++|+||++++++++.+..|++.|+++|++
T Consensus       141 ~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~~~I~~~lk~~L~l  220 (248)
T 4axg_A          141 KQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRL  220 (248)
T ss_dssp             TTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHTTC
T ss_pred             CCccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCHHHHHHHHHHHHHHhCC
Confidence            99999999998754   589999999999999999889999999999999999999999999999999999999999998


Q ss_pred             C--CeeeEEEccccc--cCCCCCceeeC
Q 027346          201 S--DTIGFIFHEDAK--HDNRSKNRYTT  224 (224)
Q Consensus       201 ~--~~i~f~~H~~s~--~~~~~~~~~~~  224 (224)
                      +  ..|+|+.|.+++  .+|++|++|+|
T Consensus       221 ~~~~~i~yk~H~ds~~~~~s~~k~~y~v  248 (248)
T 4axg_A          221 GRNNSLQYQLHKDTMVKQGSNVKSIYTL  248 (248)
T ss_dssp             CTTSCEEEEETGGGCCCC--CCCCSEEC
T ss_pred             CCCCeEEEeehhhhhhccCCCCceeEeC
Confidence            5  469999999997  78889999986

>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A

Probab=99.52  E-value=3e-14  Score=124.39  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=86.6

Q ss_pred             CCCCCCcEEEEEecC-CChHHHHHHHHHHHhcCCCCCCCceeeEEEEecCC---CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027346          121 PVCANGGKWTVIFPK-GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRAR---QEKISLWTKNASNEAAQMSIGKQWKE  196 (224)
Q Consensus       121 p~N~nGG~w~i~~~k-~~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R~~---~~~IsIW~~~~~~~~~~~~I~~~lk~  196 (224)
                      +.|..||||+|.+.+ ..+|.+|+++++++|+++      +||++|+.|..   ..+|+||+++..+...+++|++.||+
T Consensus       121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV~RV~~~Lre  194 (251)
T 1ztp_A          121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRA  194 (251)
T ss_dssp             HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence            458999999999988 679999999999999765      59999999986   79999999999999999999999999


Q ss_pred             HcCCCCeeeEEEccccccCCCCCceee
Q 027346          197 LLDYSDTIGFIFHEDAKHDNRSKNRYT  223 (224)
Q Consensus       197 ~L~~~~~i~f~~H~~s~~~~~~~~~~~  223 (224)
                       |++...|.|++|.++..|+..+++|.
T Consensus       195 -LGl~~~I~YK~D~~T~~Giy~~n~~~  220 (251)
T 1ztp_A          195 -AGIKCLLTYKPDVYTYLGIYRANRWH  220 (251)
T ss_dssp             -TTCCSCEEEEEHHHHHTTCCSSCSSC
T ss_pred             -cCCCcceeeccchHhhcCCccCCcce
Confidence             99988899999999887777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1l8ba_	182	d.86.1.1 (A:) Translation initiation factor eIF4e	1e-61
d1ap8a_	213	d.86.1.1 (A:) Translation initiation factor eIF4e	1e-53

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  188 bits (479), Expect = 1e-61
 Identities = 76/183 (41%), Positives = 104/183 (56%), Gaps = 12/183 (6%)

Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF       K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 2   HPLQNRWALWFFKN---DKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 58

Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQFD-HGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE FD + D++CGAV
Sbjct: 59  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 118

Query: 165 VNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDY--SDTIGFIFHED--AKHDNRSKN 220
           VNVRA+ +KI++WT    N  A   IG+ +KE L       IG+  H D   K  + +KN
Sbjct: 119 VNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 178

Query: 221 RYT 223
           R+ 
Sbjct: 179 RFV 181

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  169 bits (429), Expect = 1e-53
 Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 12/208 (5%)

Query: 25  EELEEGEIVGDDESSK----NSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIY 80
           ++ EE   V D  ++     + +A     HPL   WT W+  P A  K  +W   +R + 
Sbjct: 8   KKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKP-AVDKSESWSDLLRPVT 66

Query: 81  TFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS-- 138
           +F +VEEFW++  NI  P +L + +D++ F+N + P+WED   A GGKW+       +  
Sbjct: 67  SFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADI 126

Query: 139 DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKEL 197
           D  WL TLLA+IGE  D    +I G V+++R    K +LWTK+   E   + IG ++K++
Sbjct: 127 DELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKE-PLLRIGGKFKQV 185

Query: 198 LDYSD--TIGFIFHEDAKHDNRSKNRYT 223
           L  +D   + F  H  A +    +   T
Sbjct: 186 LKLTDDGHLEFFPHSSA-NGRHPQPSIT 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1l8ba_	182	Translation initiation factor eIF4e {Mouse (Mus mu	100.0
d1ap8a_	213	Translation initiation factor eIF4e {Baker's yeast	100.0
d1ztpa1	234	Basophilic leukemia expressed protein BLES03 {Huma	95.58

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-54  Score=358.42  Aligned_cols=173  Identities=42%  Similarity=0.849  Sum_probs=156.2

Q ss_pred             CCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCCCcE
Q 027346           49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK  128 (224)
Q Consensus        49 ~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~nGG~  128 (224)
                      +|||+++|||||+.+..   ..+|.+++++|++|+|||+||++|++|++|++|+.+++|+|||+||+||||||+|++||+
T Consensus         1 kHpL~~~Wt~w~~~~~~---~~~~~~~~~~i~~f~tvE~Fw~~~~~i~~~~~l~~~~~~~lFk~gI~P~WED~~N~~GG~   77 (182)
T d1l8ba_           1 KHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGR   77 (182)
T ss_dssp             CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCEE
T ss_pred             CCCCCCeEEEEEEeCCC---CchhhhcceEEEEEcCHHHHHHHHHcCCChHHCCccceEEEEecCccCCCCCcccCCCCE
Confidence            59999999999998653   468999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEec----CCChHHHHHHHHHHHhcCCCC-CCCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC-
Q 027346          129 WTVIFP----KGKSDTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD-  202 (224)
Q Consensus       129 w~i~~~----k~~~d~~W~~lll~~IGe~f~-~~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~-  202 (224)
                      |+|+++    ++.++.+|++|||+||||+|. ..++||||++|+|++.++|+||++++++++.+..|++.++++|++++ 
T Consensus        78 ~~~~i~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~~~~~~~~i~~~~~~~L~l~~~  157 (182)
T d1l8ba_          78 WLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPK  157 (182)
T ss_dssp             EEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHHTCCTT
T ss_pred             EEEEECcccccchHHHHHHHHHHHHHhcccccCCCeeccEEEEecCCCcEEEEEeCCCccHHHHHHHHHHHHHHhCcCCC
Confidence            999996    356899999999999999995 46789999999999999999999999998889999999999999864 


Q ss_pred             -eeeEEEccccc--cCCCCCceeeC
Q 027346          203 -TIGFIFHEDAK--HDNRSKNRYTT  224 (224)
Q Consensus       203 -~i~f~~H~~s~--~~~~~~~~~~~  224 (224)
                       .|.|++|.++.  .++++|+||+|
T Consensus       158 ~~~~yk~H~d~~~~~~~~~k~~~~~  182 (182)
T d1l8ba_         158 IVIGYQSHADTATKSGSTTKNRFVV  182 (182)
T ss_dssp             SCCEEEEHHHHHTC-----CCSEEC
T ss_pred             CeEEEEechhhhhccCCccccceeC
Confidence             69999999975  78889999986

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-50  Score=344.26  Aligned_cols=166  Identities=36%  Similarity=0.806  Sum_probs=149.8

Q ss_pred             CCCCCCCCcceEEEEECCCCcccccchhhccceeeeeccHHHHHHhccccCCCCcCCCCceEEEecCCCccCCCCCCCCC
Q 027346           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (224)
Q Consensus        46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~i~~ps~l~~~~~~~lFK~gI~P~WEDp~N~n  125 (224)
                      ....|||+++|||||+.+... +..+|.+++++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|++
T Consensus        33 ~~~kHpL~~~Wt~wy~~~~~~-~~~~y~~~l~~I~~f~TvE~Fw~~~~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~n  111 (213)
T d1ap8a_          33 FDVKHPLNTKWTLWYTKPAVD-KSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAK  111 (213)
T ss_dssp             CCCSSEEEEEEEEEEECCCGG-GTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTTT
T ss_pred             CCcCCcCCCcEEEEEEcCCCC-cccchhhhceEEEEEccHHHHHHHHHhCCCHHHCCcccEEEEEecCccCCCCCcccCC
Confidence            345699999999999987643 4578999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCC--ChHHHHHHHHHHHhcCCCCC-CCceeeEEEEecCCCcEEEEecCCCCCHHHHHHHHHHHHHHcCCCC
Q 027346          126 GGKWTVIFPKG--KSDTSWLYTLLAMIGEQFDH-GDEICGAVVNVRARQEKISLWTKNASNEAAQMSIGKQWKELLDYSD  202 (224)
Q Consensus       126 GG~w~i~~~k~--~~d~~W~~lll~~IGe~f~~-~~~I~Gvvvs~R~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~~~~  202 (224)
                      ||+|+|++++.  .++++|++|||++|||+|+. .+.|||||+|+|++.++|+||+++.. ...+.+|++.|+++|+++.
T Consensus       112 GG~~~~~i~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~-~~~~~~I~~~lk~~L~l~~  190 (213)
T d1ap8a_         112 GGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSED-KEPLLRIGGKFKQVLKLTD  190 (213)
T ss_dssp             SEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSSC-HHHHHHHHHHHHHHTTCCS
T ss_pred             CCEEEEEEccCCCcHHHHHHHHHHHHHhcccccCCCEEeeEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCC
Confidence            99999999764  57999999999999999964 45799999999999999999999864 4457799999999999853


Q ss_pred             --eeeEEEccccc
Q 027346          203 --TIGFIFHEDAK  213 (224)
Q Consensus       203 --~i~f~~H~~s~  213 (224)
                        .|+|++|+++.
T Consensus       191 ~~~i~y~~H~~~~  203 (213)
T d1ap8a_         191 DGHLEFFPHSSAN  203 (213)
T ss_dssp             SCCCEEECGGGGG
T ss_pred             CCeEEEEeccccc
Confidence              68999999976

>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein BLES03 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: BLES03-like
domain: Basophilic leukemia expressed protein BLES03
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.035  Score=45.65  Aligned_cols=84  Identities=15%  Similarity=0.262  Sum_probs=67.0

Q ss_pred             CCCCcEEEEEecCC-ChHHHHHHHHHHHhcCCCCCCCceeeEEEEec---CCCcEEEEecCCCCCHHHHHHHHHHHHHHc
Q 027346          123 CANGGKWTVIFPKG-KSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR---ARQEKISLWTKNASNEAAQMSIGKQWKELL  198 (224)
Q Consensus       123 N~nGG~w~i~~~k~-~~d~~W~~lll~~IGe~f~~~~~I~Gvvvs~R---~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L  198 (224)
                      +.=-|||+|.+... .+|.+|..+.-+++-++|.    +  +-++.+   .+...|.|.+++-.+...+++++..|+ .+
T Consensus       107 ~v~sGKWmif~~p~d~VD~~W~~VA~At~~G~Lg----~--AKVst~~~~~~~rlIcVYT~Df~D~~DV~RV~~~LR-~~  179 (234)
T d1ztpa1         107 HVLSGKWLMHLAPGFKLDHAWAGIARAVVEGRLQ----V--AKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIR-AA  179 (234)
T ss_dssp             TCCCEEEEEEECSSHHHHHHHHHHHHHHHHTSCS----E--EEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHH-HT
T ss_pred             CceeeeeEEecCchHHHHHHHHHHHHHHHcCcee----e--EEeccCCCCCCceEEEEECCCCCCHHHHHHHHHHHH-Hc
Confidence            45579999998665 7999999999999988873    2  234444   234789999999999999999999996 68


Q ss_pred             CCCCeeeEEEccccc
Q 027346          199 DYSDTIGFIFHEDAK  213 (224)
Q Consensus       199 ~~~~~i~f~~H~~s~  213 (224)
                      ++...|.||..-.+-
T Consensus       180 G~~~~i~YK~DayTy  194 (234)
T d1ztpa1         180 GIKCLLTYKPDVYTY  194 (234)
T ss_dssp             TCCSCEEEEEHHHHH
T ss_pred             CCCceeeecchHHHH
Confidence            888779999865544