Citrus Sinensis ID: 027355

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLVKTT
ccccccEEEccccEEEccccccEEEEEEEEEcccccEEEEEEEcccccEEEEEcccEEEccccEEEEEEEEEcccccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccc
cccccEEEccccccccccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEcccccccccccccccEEEEEEEEcccccHHHccHHHHcccccccEEccEEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcc
mstgdlvniqpselkfpfelkkqsscsmqltnktdKFVAFKvkttnpkkycvrpntgiilprtscAVTVTMqaqkeappdfqckdkfLLLSvvapdgatakdigpdmftkedgkVVEEFKLRVvyipanppspvpegseegssprafsqengnhhnssfdDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEIsksraggfSTVFVLLIGLLGILVGYLVKTT
mstgdlvniqpselkfpFELKKQSSCSMQLTNKTDKFVAfkvkttnpkkycvrpntgiilprTSCAVTVTMQAQKeappdfqckDKFLLLSVVAPdgatakdigpdmfTKEDGKVVEEFKLRVVYipanppspvpegSEEGSSPRAFSQENGNHHNSSFDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEisksraggfstVFVLLIGLLGILVGYLVKTT
MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANppspvpegseegsspRAFSQENGNHHNSSFDDAWSMISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFvlligllgilvgylvKTT
******************************TNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIP**********************************************************************RAGGFSTVFVLLIGLLGILVGYLV***
**TGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV*********************************************************************************FVLLIGLLGILVGYLVKTT
MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP************************NSSFDDAWSMISKLTE***********LRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLVKTT
****DLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN**********************************SMISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLVKTT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
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MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDDAWSMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGFSTVFVLLIGLLGILVGYLVKTT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query224 2.2.26 [Sep-21-2011]
Q84WW5239 Vesicle-associated protei yes no 0.986 0.924 0.669 2e-81
Q8VZ95256 Vesicle-associated protei no no 1.0 0.875 0.575 9e-68
Q9SHC8239 Vesicle-associated protei no no 0.982 0.920 0.575 3e-65
Q9LVU1220 Vesicle-associated protei no no 0.919 0.936 0.463 3e-50
Q9SYC9 571 Vesicle-associated protei no no 0.776 0.304 0.514 1e-44
O82213149 Vesicle-associated protei no no 0.562 0.845 0.619 7e-40
B9DHD7 386 Vesicle-associated protei no no 0.580 0.336 0.556 7e-36
Q16943260 Vesicle-associated membra N/A no 0.745 0.642 0.318 2e-15
O60119 383 Vesicle-associated membra yes no 0.464 0.271 0.425 3e-15
Q5R601249 Vesicle-associated membra yes no 0.924 0.831 0.276 5e-14
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function desciption
 Score =  301 bits (771), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/236 (66%), Positives = 186/236 (78%), Gaps = 15/236 (6%)

Query: 1   MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTNPKKYCVRPNTGII 59
           M+TGDLVNI P+ELKFPFELKKQSSCSMQLTNKT  + VAFKVKTTNP+KYCVRPNTG++
Sbjct: 1   MTTGDLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVV 60

Query: 60  LPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEF 119
           LP  SC VTVTMQAQKEAP D QCKDKFL+ +VV  DG T+K++  +MF KE G+V+E+F
Sbjct: 61  LPGDSCNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDF 120

Query: 120 KLRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDD--------------AWSM 165
           KLRVVYIPANPPSPVPEGSEEG+SP A   +  +   S FDD              AWSM
Sbjct: 121 KLRVVYIPANPPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSEKSSEAWSM 180

Query: 166 ISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVFVLLIGLLGILVGYLV 221
           ISKLTEEKTSA QQ+QKLR ELE +RKE SK ++GG S + +LL+GLLG ++GYL+
Sbjct: 181 ISKLTEEKTSATQQSQKLRLELEMLRKETSKKQSGGHSLLLMLLVGLLGCVIGYLL 236
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Aplysia californica PE=2 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query224
225453969239 PREDICTED: vesicle-associated protein 1- 1.0 0.937 0.744 5e-97
224067667237 predicted protein [Populus trichocarpa] 0.991 0.936 0.696 3e-89
449445449238 PREDICTED: vesicle-associated protein 1- 1.0 0.941 0.668 2e-88
255541208238 vesicle-associated membrane protein, put 1.0 0.941 0.731 2e-88
18411240239 VAMP (vesicle-associated membrane protei 0.986 0.924 0.669 1e-79
21592874239 putative proline-rich protein [Arabidops 0.986 0.924 0.669 2e-79
388501352239 unknown [Lotus japonicus] 0.986 0.924 0.630 3e-79
223944281241 unknown [Zea mays] gi|413917382|gb|AFW57 0.995 0.925 0.636 1e-78
226505548241 vesicle-associated membrane protein-asso 0.995 0.925 0.632 7e-78
356495613241 PREDICTED: vesicle-associated protein 1- 0.986 0.917 0.612 3e-77
>gi|225453969|ref|XP_002280265.1| PREDICTED: vesicle-associated protein 1-3 [Vitis vinifera] gi|296089177|emb|CBI38880.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 178/239 (74%), Positives = 198/239 (82%), Gaps = 15/239 (6%)

Query: 1   MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIIL 60
           M+TGDL+NI P+ELKFPFELKKQSSCS+QLTNKTD++VAFKVKTTNPKKYCVRPNTG++L
Sbjct: 1   MTTGDLLNIHPTELKFPFELKKQSSCSLQLTNKTDQYVAFKVKTTNPKKYCVRPNTGVVL 60

Query: 61  PRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFK 120
           P  +C VTVTMQAQKEAPPD QCKDKFLL SVVAP  ATAKDI  +MF K DGKVVEEFK
Sbjct: 61  PGATCNVTVTMQAQKEAPPDMQCKDKFLLQSVVAPTAATAKDITTEMFNKVDGKVVEEFK 120

Query: 121 LRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSF--------------DDAWSMI 166
           LRVVYIPANPPSPVPEGSEEGSSPRA   ENGN + S F               +AWSM+
Sbjct: 121 LRVVYIPANPPSPVPEGSEEGSSPRASVHENGNQNTSLFCTVKGSPEEAKEEALEAWSMV 180

Query: 167 SKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFSTVF-VLLIGLLGILVGYLVKTT 224
           +KLTEE+ SA+QQNQKLRQELE VRKEISKSRAGG S  F V+L+GL+GIL+GY VK T
Sbjct: 181 TKLTEERASALQQNQKLRQELELVRKEISKSRAGGISLFFVVVLVGLIGILLGYFVKRT 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224067667|ref|XP_002302522.1| predicted protein [Populus trichocarpa] gi|222844248|gb|EEE81795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449445449|ref|XP_004140485.1| PREDICTED: vesicle-associated protein 1-3-like [Cucumis sativus] gi|449521832|ref|XP_004167933.1| PREDICTED: vesicle-associated protein 1-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255541208|ref|XP_002511668.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223548848|gb|EEF50337.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18411240|ref|NP_567153.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|75148826|sp|Q84WW5.1|VAP13_ARATH RecName: Full=Vesicle-associated protein 1-3; AltName: Full=Plant VAP homolog 13; Short=AtPVA13; AltName: Full=VAMP-associated protein 1-3 gi|25054852|gb|AAN71916.1| putative proline-rich protein [Arabidopsis thaliana] gi|332656433|gb|AEE81833.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21592874|gb|AAM64824.1| putative proline-rich protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388501352|gb|AFK38742.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|223944281|gb|ACN26224.1| unknown [Zea mays] gi|413917382|gb|AFW57314.1| vesicle-associated membrane protein-associated protein A [Zea mays] Back     alignment and taxonomy information
>gi|226505548|ref|NP_001152594.1| vesicle-associated membrane protein-associated protein A [Zea mays] gi|195657907|gb|ACG48421.1| vesicle-associated membrane protein-associated protein A [Zea mays] Back     alignment and taxonomy information
>gi|356495613|ref|XP_003516669.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query224
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.906 0.849 0.619 6.2e-62
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.919 0.804 0.513 1.7e-52
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.910 0.853 0.513 2e-49
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.825 0.840 0.457 4.2e-40
TAIR|locus:2025585 386 VAP27-2 "vamp/synaptobrevin-as 0.544 0.316 0.565 1.9e-39
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.562 0.845 0.619 7e-38
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.763 0.268 0.454 2.4e-33
UNIPROTKB|G4N022285 MGG_06183 "Uncharacterized pro 0.526 0.414 0.412 3.2e-17
DICTYBASE|DDB_G0278773310 DDB_G0278773 "major sperm prot 0.531 0.383 0.362 7.1e-17
SGD|S000000922244 SCS2 "Integral ER membrane pro 0.531 0.487 0.346 7.7e-16
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 135/218 (61%), Positives = 156/218 (71%)

Query:     1 MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTNPKKYCVRPNTGII 59
             M+TGDLVNI P+ELKFPFELKKQSSCSMQLTNKT  + VAFKVKTTNP+KYCVRPNTG++
Sbjct:     1 MTTGDLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVV 60

Query:    60 LPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEF 119
             LP  SC VTVTMQAQKEAP D QCKDKFL+ +VV  DG T+K++  +MF KE G+V+E+F
Sbjct:    61 LPGDSCNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDF 120

Query:   120 KLRVVYIPANXXXXXXXXXXXXXXXRAFSQENGNHHNSSFDD--------------AWSM 165
             KLRVVYIPAN                A   +  +   S FDD              AWSM
Sbjct:   121 KLRVVYIPANPPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSEKSSEAWSM 180

Query:   166 ISKLTEEKTSAMQQNQKLRQELEFVRKEISKSRAGGFS 203
             ISKLTEEKTSA QQ+QKLR ELE +RKE SK ++GG S
Sbjct:   181 ISKLTEEKTSATQQSQKLRLELEMLRKETSKKQSGGHS 218
GO:0005198 "structural molecule activity" evidence=IEA;ISS
GO:0008150 "biological_process" evidence=ND
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278773 DDB_G0278773 "major sperm protein (MSP) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84WW5VAP13_ARATHNo assigned EC number0.66940.98660.9246yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 1e-30
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 1e-21
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  108 bits (272), Expect = 1e-30
 Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 2/98 (2%)

Query: 6   LVNIQPSE-LKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
           L+ I P + L F     KQ + ++ LTN +DK VAFKVKTTNPK+Y VRPN GI+ P  S
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 65  CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKD 102
             +T+T Q   + P D   KDKF++    APD A    
Sbjct: 61  VTITITRQPFDKEPGD-PKKDKFVIQYTEAPDDAKDAK 97

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 224
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.96
KOG0439218 consensus VAMP-associated protein involved in inos 99.96
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.91
PF14874102 PapD-like: Flagellar-associated PapD-like 98.72
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 97.34
PRK10884206 SH3 domain-containing protein; Provisional 95.93
PRK09918230 putative fimbrial chaperone protein; Provisional 94.95
PRK11385236 putativi pili assembly chaperone; Provisional 94.64
PRK15249253 fimbrial chaperone protein StbB; Provisional 94.61
PRK09926246 putative chaperone protein EcpD; Provisional 94.42
PF14646426 MYCBPAP: MYCBP-associated protein family 94.3
PRK15211229 fimbrial chaperone protein PefD; Provisional 93.49
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 93.48
PRK15299227 fimbrial chaperone protein StiB; Provisional 93.15
PRK15192234 fimbrial chaperone BcfG; Provisional 93.01
PRK15246233 fimbrial assembly chaperone StbE; Provisional 92.59
PRK15295226 fimbrial assembly chaperone SthB; Provisional 91.57
PRK15290243 lfpB fimbrial chaperone protein; Provisional 91.34
PF0595794 DUF883: Bacterial protein of unknown function (DUF 91.11
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 91.05
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 90.16
PRK15188228 fimbrial chaperone protein BcfB; Provisional 90.0
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 89.98
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 89.91
COG3121235 FimC P pilus assembly protein, chaperone PapD [Cel 89.88
PRK15218226 fimbrial chaperone protein PegB; Provisional 89.65
PRK15195229 fimbrial chaperone protein FimC; Provisional 89.63
PRK10132108 hypothetical protein; Provisional 89.19
PRK15254239 fimbrial chaperone protein StdC; Provisional 88.66
PF0234432 Myc-LZ: Myc leucine zipper domain; InterPro: IPR00 87.53
smart0034044 HALZ homeobox associated leucin zipper. 87.4
PRK15224237 pili assembly chaperone protein SafB; Provisional 86.03
PF1518885 CCDC-167: Coiled-coil domain-containing protein 16 85.17
COG4575104 ElaB Uncharacterized conserved protein [Function u 85.13
PRK00888105 ftsB cell division protein FtsB; Reviewed 84.82
PF0497780 DivIC: Septum formation initiator; InterPro: IPR00 84.59
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 84.55
PF04420161 CHD5: CHD5-like protein; InterPro: IPR007514 Membe 83.99
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 83.61
PF0537755 FlaC_arch: Flagella accessory protein C (FlaC); In 83.36
PRK15253242 putative fimbrial assembly chaperone protein StcB; 83.28
PRK15274257 putative periplasmic fimbrial chaperone protein St 82.3
TIGR03079399 CH4_NH3mon_ox_B methane monooxygenase/ammonia mono 81.54
PRK15233246 putative fimbrial chaperone protein SefB; Provisio 80.68
PF0116659 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 80.65
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 80.47
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=99.96  E-value=9.8e-30  Score=209.46  Aligned_cols=118  Identities=40%  Similarity=0.632  Sum_probs=109.3

Q ss_pred             eEEeCCeeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCC-CCCCCCC
Q 027355            7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP-PDFQCKD   85 (224)
Q Consensus         7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p-~~~~~kd   85 (224)
                      |+|+|. +.|..|+....++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+||+.++.| +|.+|+|
T Consensus         3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd   81 (242)
T COG5066           3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD   81 (242)
T ss_pred             eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence            577784 77777999999999999999999999999999999999999999999999999999999998776 6889999


Q ss_pred             eEEEEEEecCCCCCcccCCCCcccccCCCeeeEEEeEEEEe
Q 027355           86 KFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI  126 (224)
Q Consensus        86 KFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~  126 (224)
                      |||||++..+...+..|+ +++|...++.-|.+.|+||+|.
T Consensus        82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvys  121 (242)
T COG5066          82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYS  121 (242)
T ss_pred             eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEee
Confidence            999999999987777788 8999998888899999999998

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15218 fimbrial chaperone protein PegB; Provisional Back     alignment and domain information
>PRK15195 fimbrial chaperone protein FimC; Provisional Back     alignment and domain information
>PRK10132 hypothetical protein; Provisional Back     alignment and domain information
>PRK15254 fimbrial chaperone protein StdC; Provisional Back     alignment and domain information
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes Back     alignment and domain information
>smart00340 HALZ homeobox associated leucin zipper Back     alignment and domain information
>PRK15224 pili assembly chaperone protein SafB; Provisional Back     alignment and domain information
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167 Back     alignment and domain information
>COG4575 ElaB Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation [] Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct [] Back     alignment and domain information
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional Back     alignment and domain information
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional Back     alignment and domain information
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B Back     alignment and domain information
>PRK15233 putative fimbrial chaperone protein SefB; Provisional Back     alignment and domain information
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 4e-12
2rr3_A130 Solution Structure Of The Complex Between Human Vap 8e-12
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 1e-11
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 3e-11
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 5e-11
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 6e-05
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure 
Iteration: 1

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 6   LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
           LV   PS+LKF        + +++L N +D+ V FKVKTT P++YCVRPN+GII P +  
Sbjct: 15  LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIV 74
Query: 66  AVTVTMQAQKEAPPDFQCKDKFLLLSVVAP 95
            V+V +Q   +  P+ + K KF++ ++ AP
Sbjct: 75  TVSVMLQPF-DYDPNEKSKHKFMVQTIFAP 103
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 4e-41
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 2e-37
2cri_A147 Vesicle-associated membrane protein-associated pro 4e-36
1z9l_A128 Vesicle-associated membrane protein-associated pro 1e-34
1m1s_A116 WR4; structural genomics, major sperm protein, bio 1e-28
1row_A109 SSP-19, MSP-domain protein like family member; bet 9e-25
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 4e-04
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  136 bits (343), Expect = 4e-41
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 1   MSTGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGII 59
           +  G L++I P+ EL F      +    + LTN T   VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 60  LPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKE-DGKVVEE 118
            P  S  + V+             +D+FL+++      +         F KE     V E
Sbjct: 73  DPGASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 119 FKLRVVYI-PANPPSPVPEGSEEG 141
            +LR   +  + P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query224
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 100.0
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.96
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.96
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.47
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 98.27
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 98.15
3qis_A 366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.65
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.9
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.51
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 95.03
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 92.9
4ay0_A218 Chaperone protein CAF1M; amino acid motifs, bacter 92.88
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 92.32
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 91.7
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 91.62
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 91.35
2akf_A32 Coronin-1A; coiled coil, protein binding; 1.20A {S 88.39
3gfu_C224 Chaperone protein FAEE; immunoglobulin like fold, 88.25
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 88.23
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 87.05
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 85.78
1yew_A382 Particulate methane monooxygenase, B subunit; memb 85.63
3m48_A33 General control protein GCN4; leucine zipper, synt 85.41
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 85.35
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 83.94
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 83.69
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 83.1
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 82.17
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 81.84
1uo4_A34 General control protein GCN4; four helix bundle, c 81.7
2l5g_B42 Putative uncharacterized protein NCOR2, G protein 81.58
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 81.14
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 80.03
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
Probab=100.00  E-value=1.6e-38  Score=254.80  Aligned_cols=134  Identities=28%  Similarity=0.457  Sum_probs=121.3

Q ss_pred             CCCceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCCC
Q 027355            3 TGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF   81 (224)
Q Consensus         3 ~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~~   81 (224)
                      ++++|.|+|. +|.|.+++++.++|.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+    .
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~   90 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V   90 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence            4689999998 8999999999999999999999999999999999999999999999999999999999999753    2


Q ss_pred             CCCCeEEEEEEecC--CCCCcccCCCCcccccCCCeeeEEEeEEEEe-cCCCCCCCCCCCCCC
Q 027355           82 QCKDKFLLLSVVAP--DGATAKDIGPDMFTKEDGKVVEEFKLRVVYI-PANPPSPVPEGSEEG  141 (224)
Q Consensus        82 ~~kdKFlVqs~~~~--~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~-p~~~~s~v~e~~~e~  141 (224)
                      .++|||+||++.++  ++.+..|+ .++|++..+..++++||||+|+ |++|+|++.+|.++|
T Consensus        91 ~~kDKFlVqs~~v~~~~~~~~~d~-~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~  152 (152)
T 1wic_A           91 SAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG  152 (152)
T ss_dssp             CSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred             CCCCEEEEEEEEcCCcCCCChhhH-HHHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence            68999999999999  55556677 5899998888899999999999 888888888877654
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic} Back     alignment and structure
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens} Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 224
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 6e-44
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 9e-39
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 8e-28
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 2e-27
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  142 bits (360), Expect = 6e-44
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 1   MSTGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGII 59
           +  G L++I P+ EL F      +    + LTN T   VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 60  LPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKE-DGKVVEE 118
            P  S  + V+             +D+FL+++      +         F KE     V E
Sbjct: 73  DPGASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 119 FKLRVVYI-PANPPSPVPEGSEEG 141
            +LR   +  + P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query224
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 100.0
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 100.0
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.93
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.93
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 96.69
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 96.32
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 94.97
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 94.32
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 86.54
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 84.8
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 81.49
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 81.25
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 81.16
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.9e-35  Score=230.75  Aligned_cols=134  Identities=27%  Similarity=0.421  Sum_probs=115.8

Q ss_pred             CCCCceEEeCC-eeeecccCCCceeEEEEEEcCCCCeEEEEEeecCCCcEEEeCCceeeCCCCeEEEEEEecCCccCCCC
Q 027355            2 STGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD   80 (224)
Q Consensus         2 ~~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~Gii~P~~s~~I~Vtlq~~~~~p~~   80 (224)
                      ..+++|.|+|. +|+|.+++++.++|.|+|+|+++++||||||||+|++|+|||++|+|.||++++|.|++++..    .
T Consensus        14 ~~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~~----~   89 (152)
T d1wica_          14 FKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGL----T   89 (152)
T ss_dssp             BCCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSS----C
T ss_pred             cCCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCCC----c
Confidence            35689999997 699999999999999999999999999999999999999999999999999999999998642    3


Q ss_pred             CCCCCeEEEEEEecCCCCC--cccCCCCcccccCCCeeeEEEeEEEEe-cCCCCCCCCCCCCC
Q 027355           81 FQCKDKFLLLSVVAPDGAT--AKDIGPDMFTKEDGKVVEEFKLRVVYI-PANPPSPVPEGSEE  140 (224)
Q Consensus        81 ~~~kdKFlVqs~~~~~~~~--~~d~~~~~f~~~~~~~i~~~kL~v~~~-p~~~~s~v~e~~~e  140 (224)
                      +.++|||+|+++.+++..+  ..|+ .++|+...+..++++||||+|+ ++.+++++..+.++
T Consensus        90 ~~~kdKFli~~~~v~~~~~~~~~d~-~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~~~~~~  151 (152)
T d1wica_          90 VSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSS  151 (152)
T ss_dssp             CCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSC
T ss_pred             ccCCCcEEEEEEEeCCCCCCCccCH-HHHhhcCCcCcEEEEEEEEEEeCCCCCCCccccCCCC
Confidence            4689999999999986542  3455 5789887788899999999999 66776766555544
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure