Citrus Sinensis ID: 027389

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVsskgstkvdaaENDLESGIDWLLKQLQQVNIQMQdwvssggsemvsHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRtrldledgvgspeqALLKEHASinrstgqmDSVISQAQATLGALVFQrstfgginsklsnvssrlpsVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Flexible Loop (DISEMBL)
mdvpsswdALRKQARKLEAQLDEQMHSYRKlvsskgstkVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSklsnvssrlpsVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Low Complexity Region (SEG)
MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Disordered region (IsUnstruct)
************************************************SGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLR*********************************************************AQATLGALVFQRSTFGGINSK***********NQILSSIKRKKSMDTIILALVASVCTFLIFIYWV**
Disordered Region (DISOPRED)
****SSW*ALRKQARKLEAQLDEQMH**************************WLLKQLQQVN**********************QEILQDLTQEFYRLR*****************************************************VISQAQATLGALVF*RS**GGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Disordered Region (DISEMBL)
*********LRKQARKLEAQLDEQMHSYRKL***********AENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Disordered Region (DISPRO)
******WDALRKQARKLEAQLDEQMHSYRKLVSSKG****D**ENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR***D****VGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q9LMP7	223	Golgi SNAP receptor compl	yes	no	0.995	1.0	0.848	1e-109
O22151	257	Golgi SNAP receptor compl	no	no	0.955	0.832	0.347	9e-33
O95249	250	Golgi SNAP receptor compl	yes	no	0.937	0.84	0.311	2e-24
Q2TBU3	250	Golgi SNAP receptor compl	yes	no	0.928	0.832	0.314	3e-24
O08522	250	Golgi SNAP receptor compl	yes	no	0.928	0.832	0.314	4e-24
O88630	250	Golgi SNAP receptor compl	yes	no	0.928	0.832	0.314	6e-24
Q62931	250	Golgi SNAP receptor compl	yes	no	0.928	0.832	0.314	6e-24
Q5RBL6	248	Golgi SNAP receptor compl	yes	no	0.928	0.838	0.312	7e-24
Q95ZW1	234	Golgi SNAP receptor compl	yes	no	0.950	0.910	0.304	2e-18
Q9VE50	232	Golgi SNAP receptor compl	yes	no	0.919	0.887	0.296	8e-18

>sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/224 (84%), Positives = 207/224 (92%), Gaps = 1/224 (0%)

Query: 1   MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQ 60
           MDVPSSWDALRKQARK+EAQLDEQMHSYR+LVS+K  +K D  E+DLE+GID LL+QLQQ
Sbjct: 1   MDVPSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQ 60

Query: 61  VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR 120
           VN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDR
Sbjct: 61  VNAQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDR 120

Query: 121 TRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180
           TRLDLEDG GS EQAL+KEH  INR+T QMD VISQAQATLG LVFQRSTFGGINSKLSN
Sbjct: 121 TRLDLEDGYGS-EQALIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSN 179

Query: 181 VSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           V+SRLP+VN IL++IKRKKSMDTIIL+LVA+VCTFLIFIYW+TK
Sbjct: 180 VASRLPTVNTILAAIKRKKSMDTIILSLVAAVCTFLIFIYWITK 223

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
Arabidopsis thaliana (taxid: 3702)

>sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2

 Score =  140 bits (352), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 133/253 (52%), Gaps = 39/253 (15%)

Query: 5   SSWDALRKQARKLEAQLDEQMHSYRKLVS--SKGSTK-----------------VDAAEN 45
           S W+ LR++ARK+E  LD ++ SY KL +  ++G T                  VD    
Sbjct: 11  SGWEELRREARKIEGDLDVKLSSYAKLGARFTQGDTDLVMNYEKVLKCVLVSGYVDTGSP 70

Query: 46  DLESGIDW---------LLKQLQQVNIQMQDWVSSGG-SEMVSHTLTRHQEILQDLTQEF 95
            + SG  W         LL++L  +N  M    +S   +  V+  L RH++IL + TQEF
Sbjct: 71  TVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRDILHEYTQEF 130

Query: 96  YRLRSSLKAKQEHASLL----EDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMD 151
            R++ ++ + +EHA LL    +D  E+  +      G  SP   +L+E ASI+ S   +D
Sbjct: 131 RRIKGNINSLREHAELLSSVRDDISEYKAS------GSMSPGVQVLRERASIHGSISHID 184

Query: 152 SVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVAS 211
            VI QAQAT   L  QRS F  +  K+ N+  + P +  +L SIKRK+S DT+IL+ V +
Sbjct: 185 DVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILSAVIA 244

Query: 212 VCTFLIFIYWVTK 224
            CT  + IYW++K
Sbjct: 245 ACTLFLIIYWLSK 257

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.

Arabidopsis thaliana (taxid: 3702)

>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 37/247 (14%)

Query: 5   SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG-------------- 50
           S W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S               
Sbjct: 7   SYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRM 66

Query: 51  -------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLR 99
                  I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +
Sbjct: 67  FETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTK 126

Query: 100 SSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSV 153
           ++  A +E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  
Sbjct: 127 ANFMAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET 180

Query: 154 ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVC 213
           IS A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +C
Sbjct: 181 ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC 240

Query: 214 TFLIFIY 220
           T L+ +Y
Sbjct: 241 TILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Homo sapiens (taxid: 9606)

>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 37/245 (15%)

Query: 7   WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------- 50
           W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                 
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFE 68

Query: 51  -----IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSS 101
                I+ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++
Sbjct: 69  TMAIEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 102 LKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVIS 155
             A +E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS
Sbjct: 129 FVAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETIS 182

Query: 156 QAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTF 215
            A AT   +  QR     I SK++ +++R P+VN ++  I  +K  D++IL  V  VCT 
Sbjct: 183 IAMATKENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTI 242

Query: 216 LIFIY 220
           L+ +Y
Sbjct: 243 LLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Bos taurus (taxid: 9913)

>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 127/245 (51%), Gaps = 37/245 (15%)

Query: 7   WDALRKQARKLEAQLDEQMHSYRKLVSS--------KGSTKVDAAENDLESG-------- 50
           W+ LRKQAR+LE +LD ++ S+ KL +S         G  +  +    L +G        
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query: 51  -----IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSS 101
                I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++
Sbjct: 69  TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 102 LKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVIS 155
             A +E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS
Sbjct: 129 FMAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETIS 182

Query: 156 QAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTF 215
            A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT 
Sbjct: 183 IAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTI 242

Query: 216 LIFIY 220
           L+ +Y
Sbjct: 243 LLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Cricetulus griseus (taxid: 10029)

>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=2

 Score =  110 bits (276), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 37/245 (15%)

Query: 7   WDALRKQARKLEAQLDEQMHSYRKLVSS--------KGSTKVDAAENDLESG-------- 50
           W+ LRKQAR+LE +LD ++ S+ KL +S         G  +  +    L +G        
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query: 51  -----IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSS 101
                I+ LL +L  VN +M ++  S G    +  + HTL RH++ILQD T EF++ +++
Sbjct: 69  TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 102 LKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVIS 155
             A +E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS
Sbjct: 129 FTAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETIS 182

Query: 156 QAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTF 215
            A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT 
Sbjct: 183 IAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTI 242

Query: 216 LIFIY 220
           L+ +Y
Sbjct: 243 LLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Mus musculus (taxid: 10090)

>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1

 Score =  110 bits (276), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 37/245 (15%)

Query: 7   WDALRKQARKLEAQLDEQMHSYRKLVSS--------KGSTKVDAAENDLESG-------- 50
           W+ LRKQAR+LE +LD ++ S+ KL +S         G  +  +    L +G        
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query: 51  -----IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSS 101
                I+ LL +L  VN +M ++  S G    +  + HTL RH++ILQD T EF++ +++
Sbjct: 69  TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 102 LKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVIS 155
             A +E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS
Sbjct: 129 FMAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETIS 182

Query: 156 QAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTF 215
            A AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT 
Sbjct: 183 IAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTI 242

Query: 216 LIFIY 220
           L+ +Y
Sbjct: 243 LLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1

 Score =  110 bits (275), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 35/243 (14%)

Query: 7   WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAEND------LESG---------- 50
           W+ LRKQAR+LE +LD ++ S+ KL +S   +       D      L +G          
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETM 68

Query: 51  ---IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLK 103
              I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  
Sbjct: 69  AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM 128

Query: 104 AKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVISQA 157
           + +E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS A
Sbjct: 129 SIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIA 182

Query: 158 QATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLI 217
            AT   +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+
Sbjct: 183 MATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILL 242

Query: 218 FIY 220
            +Y
Sbjct: 243 LLY 245

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Pongo abelii (taxid: 9601)

>sp|Q95ZW1|GOSR1_CAEEL Golgi SNAP receptor complex member 1 OS=Caenorhabditis elegans GN=gos-28 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 20/233 (8%)

Query: 6   SWDALRKQARKLEAQLDEQMHSYRKLV-SSKGSTKVD--------AAENDLESGIDWLLK 56
           +W+ALRK+AR  E  +D ++ S  KL  SS G   +D         +   + + I+ L++
Sbjct: 4   TWEALRKKARSTENSIDVKLVSLNKLTASSHGGFDIDEKTVSSRQTSFKTVTTEIEGLIE 63

Query: 57  QLQQVNIQMQDWVSS------GGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHAS 110
           QL  +N  M D   +        +  + HTL RH+EIL+D   E+ R R ++    +   
Sbjct: 64  QLTNINDDMNDVAGAQSSASWANNPAIQHTLRRHREILRDYGSEYRRARDNVDQVLQREL 123

Query: 111 LLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRST 170
           LL    E +R    L +     +   LKE+  IN     +D  +  A +T   +  Q   
Sbjct: 124 LLSSSNE-NRNNPILNNRARGYDM-YLKENDHINACDRLLDEQLEMAMSTKENMARQGIN 181

Query: 171 FGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIF-IYWV 222
             GI+++L ++S + P++N ++  IK KK  +T+ILA V S C  LIF I+W+
Sbjct: 182 LRGISTRLHHISKKYPAINNLMQKIKTKKQKNTLILAAVISSC--LIFTIFWI 232

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. Cooperates with ykt-6 for proper expression of Golgi-resident proteins. Required along with ykt-6 for normal embryonic development, seam cell division or differentiation, and ray formation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VE50|GOSR1_DROME Golgi SNAP receptor complex member 1 OS=Drosophila melanogaster GN=Gos28 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 30/236 (12%)

Query: 5   SSWDALRKQARKLEAQLDEQMHSYRKL------VSSKGSTKVDAAE-------NDLESGI 51
           SS+D LRKQAR LE ++D ++ ++ K+        S G   VD +        + L   I
Sbjct: 4   SSYDVLRKQARSLENEIDLKLVAFSKIGAGSGGGGSGGLGGVDTSPLLGEHVFDSLSEEI 63

Query: 52  DWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASL 111
           + +L++L  +N  M D  +SG + M  HTL RH+EILQ   QEF ++ ++   + E   L
Sbjct: 64  EQMLEKLSSLNESMSDLPASGAAAM--HTLQRHREILQGYRQEFNKICANHTMRIEREEL 121

Query: 112 LEDFREFDRTRLDLEDGVGSP-------EQALLKEHASINRSTGQMDSVISQAQATLGAL 164
           L            L    GSP        +  LKE   +N ++  ++  I+ A  T   L
Sbjct: 122 LRGS--------GLATSSGSPSISGLNRREMYLKESGHLNSASHLVNDQINIAIETRDHL 173

Query: 165 VFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220
             QR  F  + ++ +++S+R P ++ ++  I  KK  D++IL  V   C  L+ +Y
Sbjct: 174 HAQRQAFKRLQTRFNDISNRFPLISSLIQRINIKKRRDSLILGAVIGFCVILLLLY 229

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
255572761	253	golgi snare 11 protein, putative [Ricinu	1.0	0.885	0.906	1e-114
449468924	228	PREDICTED: Golgi SNAP receptor complex m	1.0	0.982	0.857	1e-110
224057553	226	predicted protein [Populus trichocarpa]	0.982	0.973	0.886	1e-109
224072701	228	predicted protein [Populus trichocarpa]	0.982	0.964	0.877	1e-108
18394296	223	Golgi SNARE 11 protein [Arabidopsis thal	0.995	1.0	0.848	1e-107
297850012	223	hypothetical protein ARALYDRAFT_471787 [	0.995	1.0	0.843	1e-107
356526250	223	PREDICTED: Golgi SNARE 11 protein-like [	0.995	1.0	0.852	1e-104
351726764	224	uncharacterized protein LOC100305690 [Gl	1.0	1.0	0.821	1e-101
388514625	224	unknown [Lotus japonicus]	1.0	1.0	0.816	1e-101
225430378	220	PREDICTED: Golgi SNARE 11 protein [Vitis	0.977	0.995	0.84	1e-101

>gi|255572761|ref|XP_002527313.1| golgi snare 11 protein, putative [Ricinus communis] gi|223533313|gb|EEF35065.1| golgi snare 11 protein, putative [Ricinus communis]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/224 (90%), Positives = 215/224 (95%)

Query: 1   MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQ 60
           MD PSSWDALRKQARKLEAQLDEQM+SYRKLVSSKGS KVDAAENDLESG+D LLKQLQQ
Sbjct: 1   MDAPSSWDALRKQARKLEAQLDEQMNSYRKLVSSKGSIKVDAAENDLESGVDRLLKQLQQ 60

Query: 61  VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR 120
           VN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEF+RLRSSL+AKQEHASLLEDFREFDR
Sbjct: 61  VNSQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFHRLRSSLRAKQEHASLLEDFREFDR 120

Query: 121 TRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180
           TRLDLEDGVGS EQALL+EHASI R+TGQMD+VISQAQATLGALV QRSTFGGINSKLSN
Sbjct: 121 TRLDLEDGVGSTEQALLREHASIGRNTGQMDNVISQAQATLGALVLQRSTFGGINSKLSN 180

Query: 181 VSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           VSSRLP+VN IL++IKRKKSMDTIIL+LVASVCTFLIFIYW+TK
Sbjct: 181 VSSRLPTVNHILTAIKRKKSMDTIILSLVASVCTFLIFIYWLTK 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468924|ref|XP_004152171.1| PREDICTED: Golgi SNAP receptor complex member 1-1-like [Cucumis sativus] gi|449484796|ref|XP_004156982.1| PREDICTED: Golgi SNAP receptor complex member 1-1-like [Cucumis sativus]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/224 (85%), Positives = 215/224 (95%)

Query: 1   MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQ 60
           M++PSSWDALRKQARKLEAQLDEQM+S+RKLVS+KGST V+ A++D+ESGI+ LLKQLQQ
Sbjct: 5   MEIPSSWDALRKQARKLEAQLDEQMNSFRKLVSTKGSTNVETADSDIESGIERLLKQLQQ 64

Query: 61  VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR 120
           VN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL+AKQEHASLL+DFREFDR
Sbjct: 65  VNSQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLRAKQEHASLLDDFREFDR 124

Query: 121 TRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180
           +RL+LEDG+G+ EQ LLKEHA+I RSTGQMD+VISQAQATLGALVFQRSTFGGINSKLSN
Sbjct: 125 SRLELEDGLGTAEQTLLKEHATIGRSTGQMDNVISQAQATLGALVFQRSTFGGINSKLSN 184

Query: 181 VSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           VSSRLPSVN IL++IKRKKSMDTIIL+LVAS+CTFLIFIYW+TK
Sbjct: 185 VSSRLPSVNHILAAIKRKKSMDTIILSLVASICTFLIFIYWLTK 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057553|ref|XP_002299264.1| predicted protein [Populus trichocarpa] gi|222846522|gb|EEE84069.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/220 (88%), Positives = 211/220 (95%)

Query: 5   SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQ 64
           SSWDALRKQARKLEAQLDEQM+SYRKL SSKGSTKVD+AEND ESGID LLKQLQQVN Q
Sbjct: 7   SSWDALRKQARKLEAQLDEQMNSYRKLASSKGSTKVDSAENDPESGIDRLLKQLQQVNSQ 66

Query: 65  MQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLD 124
           MQ WVSSGGSEMVSHTLTRHQEILQDLTQEF+RLRS ++AKQEHA LLEDFREFDRTRLD
Sbjct: 67  MQAWVSSGGSEMVSHTLTRHQEILQDLTQEFHRLRSGMRAKQEHALLLEDFREFDRTRLD 126

Query: 125 LEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSR 184
           LEDGVGS +QALL+EHASI+R+TGQMD+VISQAQATLG+LV QRSTFGGINSKLSNVSSR
Sbjct: 127 LEDGVGSADQALLREHASISRNTGQMDNVISQAQATLGSLVLQRSTFGGINSKLSNVSSR 186

Query: 185 LPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           LP+VNQILS+IKR+KSMD+IIL+LVASVCTFLIFIYWVTK
Sbjct: 187 LPTVNQILSAIKRRKSMDSIILSLVASVCTFLIFIYWVTK 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072701|ref|XP_002303840.1| predicted protein [Populus trichocarpa] gi|222841272|gb|EEE78819.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/220 (87%), Positives = 208/220 (94%)

Query: 5   SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQ 64
           SSWDALRKQARKLEAQLDEQM ++RKL SSKGSTKVD  ENDLESGID LLKQLQQVN Q
Sbjct: 9   SSWDALRKQARKLEAQLDEQMSTFRKLASSKGSTKVDFPENDLESGIDRLLKQLQQVNSQ 68

Query: 65  MQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLD 124
           MQ WVSSGGSEMVSHTLTRHQEILQDLTQEF+RLRS ++AKQEHA LLEDFREFDRTRLD
Sbjct: 69  MQAWVSSGGSEMVSHTLTRHQEILQDLTQEFHRLRSGMRAKQEHALLLEDFREFDRTRLD 128

Query: 125 LEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSR 184
           LEDGVGS +QALL+EHASI+R+TGQMD+VISQAQ+TLGALV QRSTFGGINSKLSNVSSR
Sbjct: 129 LEDGVGSADQALLREHASISRNTGQMDNVISQAQSTLGALVLQRSTFGGINSKLSNVSSR 188

Query: 185 LPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           LP+VNQILS+IKRKKSMD IIL+LVASVCTFLIFIYW+TK
Sbjct: 189 LPTVNQILSAIKRKKSMDAIILSLVASVCTFLIFIYWLTK 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394296|ref|NP_563985.1| Golgi SNARE 11 protein [Arabidopsis thaliana] gi|27805476|sp|Q9LMP7.1|GOS11_ARATH RecName: Full=Golgi SNAP receptor complex member 1-1; AltName: Full=Golgi SNARE 11 protein; Short=AtGOS11 gi|8927666|gb|AAF82157.1|AC034256_21 Contains similarity to GOS28/P28 protein from Homo sapiens gb|AF047438. ESTs gb|F14225, gb|AA395297, gb|BE038320 come from this gene [Arabidopsis thaliana] gi|12083260|gb|AAG48789.1|AF332426_1 unknown protein [Arabidopsis thaliana] gi|13898893|gb|AAK48904.1|AF357528_1 Golgi SNARE 11 protein [Arabidopsis thaliana] gi|15294144|gb|AAK95249.1|AF410263_1 At1g15880/F7H2_20 [Arabidopsis thaliana] gi|20147267|gb|AAM10347.1| At1g15880/F7H2_20 [Arabidopsis thaliana] gi|332191257|gb|AEE29378.1| Golgi SNARE 11 protein [Arabidopsis thaliana]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/224 (84%), Positives = 207/224 (92%), Gaps = 1/224 (0%)

Query: 1   MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQ 60
           MDVPSSWDALRKQARK+EAQLDEQMHSYR+LVS+K  +K D  E+DLE+GID LL+QLQQ
Sbjct: 1   MDVPSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQ 60

Query: 61  VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR 120
           VN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDR
Sbjct: 61  VNAQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDR 120

Query: 121 TRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180
           TRLDLEDG GS EQAL+KEH  INR+T QMD VISQAQATLG LVFQRSTFGGINSKLSN
Sbjct: 121 TRLDLEDGYGS-EQALIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSN 179

Query: 181 VSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           V+SRLP+VN IL++IKRKKSMDTIIL+LVA+VCTFLIFIYW+TK
Sbjct: 180 VASRLPTVNTILAAIKRKKSMDTIILSLVAAVCTFLIFIYWITK 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850012|ref|XP_002892887.1| hypothetical protein ARALYDRAFT_471787 [Arabidopsis lyrata subsp. lyrata] gi|297338729|gb|EFH69146.1| hypothetical protein ARALYDRAFT_471787 [Arabidopsis lyrata subsp. lyrata]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/224 (84%), Positives = 207/224 (92%), Gaps = 1/224 (0%)

Query: 1   MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQ 60
           MDVPSSWDALRKQARK+EAQLDEQMHSYR+LVS+K  +K D +E DLE+GID LL+QLQQ
Sbjct: 1   MDVPSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGSETDLEAGIDLLLRQLQQ 60

Query: 61  VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR 120
           VN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDR
Sbjct: 61  VNAQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDR 120

Query: 121 TRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180
           TRLDLEDG GS EQ+L+KEH  INR+T QMD VISQAQATLG LVFQRSTFGGINSKLSN
Sbjct: 121 TRLDLEDGYGS-EQSLIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSN 179

Query: 181 VSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           V+SRLP+VN IL++IKRKKSMDTIIL+LVA+VCTFLIFIYW+TK
Sbjct: 180 VASRLPTVNTILAAIKRKKSMDTIILSLVAAVCTFLIFIYWITK 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526250|ref|XP_003531731.1| PREDICTED: Golgi SNARE 11 protein-like [Glycine max]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/224 (85%), Positives = 207/224 (92%), Gaps = 1/224 (0%)

Query: 1   MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQ 60
           M+VPSSWDALRKQARKLEAQLDEQM+SYRKLVS+  STK DAAE+DLES I+ LLKQLQQ
Sbjct: 1   MEVPSSWDALRKQARKLEAQLDEQMNSYRKLVSNNVSTKADAAESDLESWIERLLKQLQQ 60

Query: 61  VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR 120
           VN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDF+EFDR
Sbjct: 61  VNTQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFKEFDR 120

Query: 121 TRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180
           TRLDLE  V S + ALLKE  SI+R+TG MD+VISQAQATLGALVFQRSTFGGINSKL N
Sbjct: 121 TRLDLEQ-VDSEQHALLKERTSISRNTGHMDNVISQAQATLGALVFQRSTFGGINSKLGN 179

Query: 181 VSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           VSSRLP+VN ILS+IKRKKSMDTIIL+LVA+VCTFLIFIYW++K
Sbjct: 180 VSSRLPTVNSILSAIKRKKSMDTIILSLVAAVCTFLIFIYWLSK 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726764|ref|NP_001235346.1| uncharacterized protein LOC100305690 [Glycine max] gi|255626327|gb|ACU13508.1| unknown [Glycine max]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/224 (82%), Positives = 205/224 (91%)

Query: 1   MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQ 60
           M+VPSSWDALRKQARKLEAQLDEQM+SYRKLVS+  STK D AE+DL S I+ LLKQLQQ
Sbjct: 1   MEVPSSWDALRKQARKLEAQLDEQMNSYRKLVSANVSTKADIAESDLGSWIERLLKQLQQ 60

Query: 61  VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR 120
           VN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYRL SS+KAKQEHASLLEDF+EFDR
Sbjct: 61  VNTQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLHSSVKAKQEHASLLEDFKEFDR 120

Query: 121 TRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180
           TRLDLE GV S + ALLKE +SI+RS G MD+VISQAQA+LGALVFQRSTFGGINSKL N
Sbjct: 121 TRLDLEQGVDSEQHALLKERSSISRSAGHMDNVISQAQASLGALVFQRSTFGGINSKLGN 180

Query: 181 VSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           VSSRLP+VN ILS+IKRKKSM+TIIL+LV++VCTFLIF+YW++K
Sbjct: 181 VSSRLPTVNNILSAIKRKKSMETIILSLVSAVCTFLIFMYWLSK 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514625|gb|AFK45374.1| unknown [Lotus japonicus]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/224 (81%), Positives = 203/224 (90%)

Query: 1   MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQ 60
           M+VPSSWDALRKQAR LEAQLDE+M S+RKLVS+  S K DAAENDLES I+ LLKQLQQ
Sbjct: 1   MEVPSSWDALRKQARNLEAQLDERMSSFRKLVSASVSAKTDAAENDLESWIEQLLKQLQQ 60

Query: 61  VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR 120
           VN QMQ WVSSGG++MVSHT TRHQEILQD+TQEFYRLRSSL+AKQEHASLLEDF+EFDR
Sbjct: 61  VNSQMQAWVSSGGTDMVSHTSTRHQEILQDITQEFYRLRSSLRAKQEHASLLEDFKEFDR 120

Query: 121 TRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180
           TRLDLE G GS + ALLKE ASI+R+TG +D+VISQAQATLGALVFQRSTFGGINSK+SN
Sbjct: 121 TRLDLETGAGSEQHALLKERASISRNTGHVDTVISQAQATLGALVFQRSTFGGINSKISN 180

Query: 181 VSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           VS RLP+VN IL +IKRKKSMDTIIL+LVASVC FLIFIYW+TK
Sbjct: 181 VSGRLPTVNSILGAIKRKKSMDTIILSLVASVCIFLIFIYWLTK 224

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430378|ref|XP_002285330.1| PREDICTED: Golgi SNARE 11 protein [Vitis vinifera] gi|296082080|emb|CBI21085.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/225 (84%), Positives = 204/225 (90%), Gaps = 6/225 (2%)

Query: 1   MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDA-AENDLESGIDWLLKQLQ 59
           MD PSSWDALRKQARKLEAQLDEQMH YRKLVS     KVD   E +++SGID LLKQLQ
Sbjct: 1   MDPPSSWDALRKQARKLEAQLDEQMHLYRKLVS----MKVDGDKEKEIDSGIDQLLKQLQ 56

Query: 60  QVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFD 119
           QVN  MQ WVSSGGSE+ SHTLTRHQEILQDLTQEFYRLRSS +AK+EHASLLEDFREFD
Sbjct: 57  QVNSHMQAWVSSGGSEIFSHTLTRHQEILQDLTQEFYRLRSSFRAKKEHASLLEDFREFD 116

Query: 120 RTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLS 179
           R+RLDLE+G GS EQALLKEHASI+RSTGQMD+VISQAQATLGALVFQRSTFGGINSKLS
Sbjct: 117 RSRLDLEEGGGS-EQALLKEHASISRSTGQMDTVISQAQATLGALVFQRSTFGGINSKLS 175

Query: 180 NVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
           NVSSRLP+VN ILS+IKRKKS+DTIIL+LVASVCTFLI IYW+TK
Sbjct: 176 NVSSRLPTVNNILSAIKRKKSLDTIILSLVASVCTFLILIYWLTK 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2036194	223	GOS11 "AT1G15880" [Arabidopsis	0.995	1.0	0.848	4.7e-96
WB|WBGene00017273	234	gos-28 [Caenorhabditis elegans	0.950	0.910	0.309	3e-21
UNIPROTKB|G5E571	244	GOSR1 "Golgi SNAP receptor com	0.754	0.692	0.337	1e-20
UNIPROTKB|Q2TBU3	250	GOSR1 "Golgi SNAP receptor com	0.754	0.676	0.337	1e-20
ZFIN|ZDB-GENE-050417-133	250	gosr1 "golgi SNAP receptor com	0.754	0.676	0.337	1e-20
UNIPROTKB|E2R812	250	GOSR1 "Golgi SNAP receptor com	0.754	0.676	0.337	1.3e-20
UNIPROTKB|E9PCW1	248	GOSR1 "Golgi SNAP receptor com	0.754	0.681	0.331	1.3e-20
UNIPROTKB|G5E9T8	255	GOSR1 "Golgi SNAP receptor com	0.754	0.662	0.331	1.3e-20
UNIPROTKB|J3KST5	185	GOSR1 "Golgi SNAP receptor com	0.754	0.913	0.331	1.3e-20
UNIPROTKB|O95249	250	GOSR1 "Golgi SNAP receptor com	0.754	0.676	0.331	1.3e-20

TAIR|locus:2036194 GOS11 "AT1G15880" [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 190/224 (84%), Positives = 207/224 (92%)

Query:     1 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQ 60
             MDVPSSWDALRKQARK+EAQLDEQMHSYR+LVS+K  +K D  E+DLE+GID LL+QLQQ
Sbjct:     1 MDVPSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQ 60

Query:    61 VNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDR 120
             VN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDR
Sbjct:    61 VNAQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDR 120

Query:   121 TRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 180
             TRLDLEDG GS EQAL+KEH  INR+T QMD VISQAQATLG LVFQRSTFGGINSKLSN
Sbjct:   121 TRLDLEDGYGS-EQALIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSN 179

Query:   181 VSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 224
             V+SRLP+VN IL++IKRKKSMDTIIL+LVA+VCTFLIFIYW+TK
Sbjct:   180 VASRLPTVNTILAAIKRKKSMDTIILSLVAAVCTFLIFIYWITK 223

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0000149 "SNARE binding" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

WB|WBGene00017273 gos-28 [Caenorhabditis elegans (taxid:6239)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 72/233 (30%), Positives = 116/233 (49%)

Query:     6 SWDALRKQARKLEAQLDEQMHSYRKLV-SSKGSTKVD--------AAENDLESGIDWLLK 56
             +W+ALRK+AR  E  +D ++ S  KL  SS G   +D         +   + + I+ L++
Sbjct:     4 TWEALRKKARSTENSIDVKLVSLNKLTASSHGGFDIDEKTVSSRQTSFKTVTTEIEGLIE 63

Query:    57 QLQQVNIQMQDWVSSGGSEM------VSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHAS 110
             QL  +N  M D   +  S        + HTL RH+EIL+D   E+ R R ++    +   
Sbjct:    64 QLTNINDDMNDVAGAQSSASWANNPAIQHTLRRHREILRDYGSEYRRARDNVDQVLQREL 123

Query:   111 LLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRST 170
             LL    E +R    L +     +   LKE+  IN     +D  +  A +T   +  Q   
Sbjct:   124 LLSSSNE-NRNNPILNNRARGYDM-YLKENDHINACDRLLDEQLEMAMSTKENMARQGIN 181

Query:   171 FGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIF-IYWV 222
               GI+++L ++S + P++N ++  IK KK  +T+ILA V S C  LIF I+W+
Sbjct:   182 LRGISTRLHHISKKYPAINNLMQKIKTKKQKNTLILAAVISSC--LIFTIFWI 232

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G5E571 GOSR1 "Golgi SNAP receptor complex member 1" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 59/175 (33%), Positives = 96/175 (54%)

Query:    51 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 106
             I+ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    68 IEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIR 127

Query:   107 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 165
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   128 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 186

Query:   166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220
              QR     I SK++ +++R P+VN ++  I  +K  D++IL  V  VCT L+ +Y
Sbjct:   187 SQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 241

GO:0000139 "Golgi membrane" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

UNIPROTKB|Q2TBU3 GOSR1 "Golgi SNAP receptor complex member 1" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 59/175 (33%), Positives = 96/175 (54%)

Query:    51 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 106
             I+ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    74 IEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIR 133

Query:   107 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 165
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   134 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 192

Query:   166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220
              QR     I SK++ +++R P+VN ++  I  +K  D++IL  V  VCT L+ +Y
Sbjct:   193 SQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 247

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-050417-133 gosr1 "golgi SNAP receptor complex member 1" [Danio rerio (taxid:7955)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 59/175 (33%), Positives = 95/175 (54%)

Query:    51 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 106
             I+ LL +L  VN +M ++ S+ G    +  + HTL RH++ILQD T EF++ +S+  A +
Sbjct:    74 IEQLLAKLTGVNDKMAEYTSTPGVTSLNAALMHTLQRHRDILQDYTHEFHKTKSNFMAIR 133

Query:   107 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 165
             E   LL   R+ D        GV +    L LKEH  +  S   +D  IS A AT   + 
Sbjct:   134 EREDLLGSVRK-DIETYKSGSGVNNRRTELFLKEHEHLRNSDRLIDDTISIAMATKENMT 192

Query:   166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220
              QR     I S+++ +++R P++N ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   193 SQRGLLKSIQSRVNTLANRFPAINNLIQRINLRKRRDSLILGGVIGICTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2R812 GOSR1 "Golgi SNAP receptor complex member 1" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 59/175 (33%), Positives = 96/175 (54%)

Query:    51 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 106
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    74 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 133

Query:   107 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 165
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   134 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 192

Query:   166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220
              QR     I SK++ +++R P+VN ++  I  +K  D++IL  V  VCT L+ +Y
Sbjct:   193 SQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

UNIPROTKB|E9PCW1 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 58/175 (33%), Positives = 97/175 (55%)

Query:    51 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 106
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    72 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 131

Query:   107 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 165
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   132 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 190

Query:   166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220
              QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   191 SQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 245

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|G5E9T8 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 58/175 (33%), Positives = 97/175 (55%)

Query:    51 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 106
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    79 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 138

Query:   107 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 165
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   139 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 197

Query:   166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220
              QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   198 SQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 252

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J3KST5 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 58/175 (33%), Positives = 97/175 (55%)

Query:    51 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 106
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:     9 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 68

Query:   107 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 165
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:    69 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 127

Query:   166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220
              QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   128 SQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 182

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O95249 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 58/175 (33%), Positives = 97/175 (55%)

Query:    51 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 106
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    74 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 133

Query:   107 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 165
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   134 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 192

Query:   166 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 220
              QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   193 SQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

GO:0015031 "protein transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0031201 "SNARE complex" evidence=TAS

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95ZW1	GOSR1_CAEEL	No assigned EC number	0.3047	0.9508	0.9102	yes	no
O95249	GOSR1_HUMAN	No assigned EC number	0.3117	0.9375	0.84	yes	no
Q5RBL6	GOSR1_PONAB	No assigned EC number	0.3127	0.9285	0.8387	yes	no
Q9LMP7	GOS11_ARATH	No assigned EC number	0.8482	0.9955	1.0	yes	no
Q2TBU3	GOSR1_BOVIN	No assigned EC number	0.3142	0.9285	0.832	yes	no
O88630	GOSR1_MOUSE	No assigned EC number	0.3142	0.9285	0.832	yes	no
O08522	GOSR1_CRIGR	No assigned EC number	0.3142	0.9285	0.832	yes	no
Q62931	GOSR1_RAT	No assigned EC number	0.3142	0.9285	0.832	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I7426 hypothetical protein (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	2e-15

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 68.0 bits (167), Expect = 2e-15
 Identities = 24/66 (36%), Positives = 31/66 (46%)

Query: 134 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS 193
           + LL+EH  +  S    D  IS  QA L  L  QR T     +KL N  +RL   N  L 
Sbjct: 1   ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLHNTDNRLGKSNSTLR 60

Query: 194 SIKRKK 199
            I R++
Sbjct: 61  LINRRR 66

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	100.0
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	99.98
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	99.97
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.62
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	99.05
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	98.54
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.15
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	97.87
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	96.52
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	96.29
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	95.38
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	95.14
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	95.09
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	94.04
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	92.85
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	91.87
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	91.25
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	91.21
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	91.13
PRK09546	324	zntB zinc transporter; Reviewed	89.68
PF01544	292	CorA: CorA-like Mg2+ transporter protein; InterPro	88.7
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	84.98
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	83.93
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	82.49
KOG2678	244	consensus Predicted membrane protein [Function unk	82.14
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	81.3
PRK10884	206	SH3 domain-containing protein; Provisional	81.2
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	81.19
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	80.71
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	80.35

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.6e-53  Score=345.67  Aligned_cols=221  Identities=50%  Similarity=0.673  Sum_probs=194.0

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------CCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027389            1 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSK---------GSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSS   71 (224)
Q Consensus         1 ~~~~~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~---------~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~   71 (224)
                      |..+++||+||++||+||+++|.||.+|++++++.         |-..++..+++++.||+.+|+++++++|+|..+...
T Consensus         1 m~~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s   80 (231)
T KOG3208|consen    1 MGSSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASS   80 (231)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccC
Confidence            67779999999999999999999999999998861         111234578999999999999999999999994433


Q ss_pred             C-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHHhhHHhhhHHHH
Q 027389           72 G-GSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQM  150 (224)
Q Consensus        72 ~-~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~~S~~~l  150 (224)
                      + +.++..|+++|||++|++|.+||++++.++.+.++|+.|++++..... ..+...+ ....+++++|+++|++|.+.+
T Consensus        81 ~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~-~~~~~~~-~~~~e~~lkE~~~in~s~~~v  158 (231)
T KOG3208|consen   81 PANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADIS-SYPSASG-FNRGEMYLKEHDHINNSIRLV  158 (231)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCccCC-CchHHHHHHHhccccchHHHH
Confidence            2 245667999999999999999999999999999999999999764321 1222222 344489999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 027389          151 DSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT  223 (224)
Q Consensus       151 d~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~~  223 (224)
                      |++|+||++|+++|+.||.+|++++.|+++++++||.+|.+|.+|++|++||.+|||+||++|++|++||||.
T Consensus       159 de~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~~  231 (231)
T KOG3208|consen  159 DELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWIN  231 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999984

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.3e-30  Score=212.34  Aligned_cols=198  Identities=22%  Similarity=0.300  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 027389            8 DALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEI   87 (224)
Q Consensus         8 ~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~   87 (224)
                      +.|...+.+.-.++...|.++++....       .+-..++.+|+..++++...|..|+..+.+.||+..+  -.+.+  
T Consensus         2 ~~ly~~t~~~~~k~q~~l~rlE~~~~~-------~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq--~~rlr--   70 (213)
T KOG3251|consen    2 DALYQSTNRQLDKLQRGLIRLERTIKT-------QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQ--AARLR--   70 (213)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHccccc-------cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHH--HHHHH--
Confidence            567888888888999999999976542       2346789999999999999999999999999876543  12222  


Q ss_pred             HHHHHHHHHHHHH-----------HHHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHHhhHHhhhHHHHHHHHHH
Q 027389           88 LQDLTQEFYRLRS-----------SLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQ  156 (224)
Q Consensus        88 L~~~~~ef~rlk~-----------~~~~~~~R~eLl~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~~S~~~ld~~l~~  156 (224)
                      .++++.||..++.           ..+++++|.+||++.  |..+  +  .++..+.|.++++++++.+|++++|+++.+
T Consensus        71 ~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~--~~~~--~--~~~~~~~D~el~~~d~l~~s~~~lDd~l~~  144 (213)
T KOG3251|consen   71 VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRR--FTNG--A--TGTSIPFDEELQENDSLKRSHNMLDDLLES  144 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--CCCC--C--ccCCCcchHHHHhhhHHHHHHhhHHHHHHH
Confidence            4444444444433           345567799999872  2221  1  122334689999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHH
Q 027389          157 AQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL-ALVASVCTFLIFIYWV  222 (224)
Q Consensus       157 g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il-~~vi~~~i~~~~~~~~  222 (224)
                      |++|+++|.+||.+|+++++|+++++++||.||.||+.|+||.+.||||+ +|||+||++|+++|.|
T Consensus       145 G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w  211 (213)
T KOG3251|consen  145 GSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRW  211 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 8888888888766655

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-29  Score=207.69  Aligned_cols=206  Identities=19%  Similarity=0.203  Sum_probs=159.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchh---hHHHH
Q 027389            5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEM---VSHTL   81 (224)
Q Consensus         5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~---~~~~l   81 (224)
                      +-|+.+.++++-|-.+|..|+++..+.+        +++++.+..+|+..+++++++++||+.+|+..||+.   +..++
T Consensus         3 ~~fe~yEqqy~~l~a~it~k~~~~~~~~--------~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~Kl   74 (220)
T KOG1666|consen    3 SLFEGYEQQYRELSAEITKKIGRALSLP--------GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKL   74 (220)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHhcCC--------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence            5689999999999999999988876543        367888999999999999999999999999999753   22344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCCCHHHHHHHHhhHHh-------hhHHHHHHHH
Q 027389           82 TRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN-------RSTGQMDSVI  154 (224)
Q Consensus        82 ~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~-------~S~~~ld~~l  154 (224)
                      ..|+..|.+++.|+++..+.--...+|+++++....     .|.+. ..+++++||+.+++|+       .|+|.+.++.
T Consensus        75 R~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~a-----dd~~~-~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETE  148 (220)
T KOG1666|consen   75 REYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEA-----DDQNI-SADQRARLLQNTERLERSTDRLKDSQRIALETE  148 (220)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhc-----ccccc-chhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHH
Confidence            444555555554444444222224467888765321     12111 1456677776666555       5556777899


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhC
Q 027389          155 SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK  224 (224)
Q Consensus       155 ~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~~k  224 (224)
                      ++|.+|+++|+.||++|.+++.+|++++.++|.|+++++.|.||..+++|+++++|+++++++++..|.|
T Consensus       149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~k  218 (220)
T KOG1666|consen  149 QIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSK  218 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999988888887666654

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.62  E-value=1.6e-15  Score=104.81  Aligned_cols=66  Identities=35%  Similarity=0.481  Sum_probs=64.0

Q ss_pred             HHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhh
Q 027389          134 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK  199 (224)
Q Consensus       134 ~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~  199 (224)
                      |+|++|+++|++|++++++++++|.+|+.+|..||++|+++++|+.++++++|.++++|+.|.+|+
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            579999999999999999999999999999999999999999999999999999999999999985

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=99.05  E-value=2.2e-09  Score=78.92  Aligned_cols=81  Identities=19%  Similarity=0.294  Sum_probs=70.8

Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 027389          140 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFI  219 (224)
Q Consensus       140 ~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~  219 (224)
                      .++|.++++++.+-++++..+++.|..|.++|+.+++...++...++.+.++++.|+||...|++|+++.++++++.++|
T Consensus         7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~y   86 (92)
T PF03908_consen    7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLY   86 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999885444333333333


Q ss_pred             H
Q 027389          220 Y  220 (224)
Q Consensus       220 ~  220 (224)
                      +
T Consensus        87 I   87 (92)
T PF03908_consen   87 I   87 (92)
T ss_pred             H
Confidence            3

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=98.54  E-value=1.7e-06  Score=61.51  Aligned_cols=76  Identities=20%  Similarity=0.236  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH
Q 027389           16 KLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEF   95 (224)
Q Consensus        16 ~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef   95 (224)
                      .+-.+|..+|..+...        +++++.....+|+..|+++.+++++|+.++++.|++    ....|...+.+|+.++
T Consensus         3 ~l~~~i~~~l~~~~~~--------~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s----~r~~~~~kl~~yr~~l   70 (79)
T PF05008_consen    3 ALTAEIKSKLERIKNL--------SGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPS----ERNQYKSKLRSYRSEL   70 (79)
T ss_dssp             HHHHHHHHHHHHGGGS---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcc--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHH
Confidence            4556677777766632        236889999999999999999999999999988753    2566777888888888


Q ss_pred             HHHHHHHH
Q 027389           96 YRLRSSLK  103 (224)
Q Consensus        96 ~rlk~~~~  103 (224)
                      ++++..++
T Consensus        71 ~~lk~~l~   78 (79)
T PF05008_consen   71 KKLKKELK   78 (79)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88877764

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.0024  Score=55.55  Aligned_cols=210  Identities=13%  Similarity=0.189  Sum_probs=119.2

Q ss_pred             HHHHHHHH---HHHHHHHHHHHhhhccCCCCCc--hhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 027389           12 KQARKLEA---QLDEQMHSYRKLVSSKGSTKVD--AAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQE   86 (224)
Q Consensus        12 ~~ar~lE~---~i~~kl~~~s~~~~~~~~~~~~--~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~   86 (224)
                      +-|.+.-.   +...||..+..++...+ ...+  -+-..+.--|...+..++.-+-++...+...+..+-.+...+++.
T Consensus        45 ~~A~~Ig~~is~T~~kl~kLa~lAKrks-~f~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~  123 (311)
T KOG0812|consen   45 KKASRIGKEISQTGAKLEKLAQLAKRKS-LFDDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKN  123 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHH
Confidence            34444444   44556666666665432 1111  123344445555566666666666655532221111244666666


Q ss_pred             HHHHHHHHHHHHHHHH-----------HHHHHHHHhhccccc-ccccc-----cccC----------C----------C-
Q 027389           87 ILQDLTQEFYRLRSSL-----------KAKQEHASLLEDFRE-FDRTR-----LDLE----------D----------G-  128 (224)
Q Consensus        87 ~L~~~~~ef~rlk~~~-----------~~~~~R~eLl~~~~~-~~~~~-----~d~~----------~----------~-  128 (224)
                      .+.+++..+..+-..+           .+.++|.+.|..... .+.++     .+..          +          + 
T Consensus       124 vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd  203 (311)
T KOG0812|consen  124 VVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGD  203 (311)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccC
Confidence            6666655554444333           445678888865311 00000     0000          0          0 


Q ss_pred             -CCC--HHHHHHHHhhH--------HhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHh
Q 027389          129 -VGS--PEQALLKEHAS--------INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR  197 (224)
Q Consensus       129 -~~~--~~~~ll~e~~~--------L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~r  197 (224)
                       ...  ....++.|.+.        +++-...+-|+=++=.+.-.-..+|.|+++++-.-+.+++-.++++.+.|-+-=.
T Consensus       204 ~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e  283 (311)
T KOG0812|consen  204 SSNPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFE  283 (311)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHH
Confidence             011  22466666622        2222223333333334445556789999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHH
Q 027389          198 KKSMDTIILALVASVCTFLIFIYWV  222 (224)
Q Consensus       198 R~~rd~~Il~~vi~~~i~~~~~~~~  222 (224)
                      |...++|.+.=+++++++||++||+
T Consensus       284 ~vSSNRwLmvkiF~i~ivFflvfvl  308 (311)
T KOG0812|consen  284 RVSSNRWLMVKIFGILIVFFLVFVL  308 (311)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999997777777777766654

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0084  Score=51.29  Aligned_cols=197  Identities=16%  Similarity=0.237  Sum_probs=120.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Q 027389            4 PSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTR   83 (224)
Q Consensus         4 ~~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r   83 (224)
                      ..+|-....++.++.+++......++.+....++. ....-..+...|+..++.+++++.=+..-..+...+.  -.+++
T Consensus         5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~-~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide--~El~~   81 (235)
T KOG3202|consen    5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKDTGSD-AEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDE--FELSR   81 (235)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcH--HHHHH
Confidence            47899999999999999999999999987752211 1111122334777777777776666554333321110  11222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhccccccc-ccccccCCCCC------CHHHHHHHHhh-HHhhhHHHH
Q 027389           84 HQEILQDLTQEFYRLRSSLKA-----KQEHASLLEDFREFD-RTRLDLEDGVG------SPEQALLKEHA-SINRSTGQM  150 (224)
Q Consensus        84 ~r~~L~~~~~ef~rlk~~~~~-----~~~R~eLl~~~~~~~-~~~~d~~~~~~------~~~~~ll~e~~-~L~~S~~~l  150 (224)
                      =+..+.+.+.+.+..+..+..     ...|.-|++.-...+ ........+..      ...+.+++|++ .|+.-+..+
T Consensus        82 R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti  161 (235)
T KOG3202|consen   82 RRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATV  161 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233344444444444444332     122666765411000 00000000111      11246667665 488888888


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhh
Q 027389          151 DSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT  203 (224)
Q Consensus       151 d~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~  203 (224)
                      -.+-.+|.++-+.|..|..+|..--.=|-.+.+.|....+-+.++.+.+....
T Consensus       162 ~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~  214 (235)
T KOG3202|consen  162 QRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCS  214 (235)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88899999999999999999998888888888888888888888888544443

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=96.52  E-value=0.46  Score=40.92  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=58.1

Q ss_pred             HHHHHHHhhHHhhhHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHH
Q 027389          133 EQALLKEHASINRSTGQMDSVISQA-------QATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTII  205 (224)
Q Consensus       133 ~~~ll~e~~~L~~S~~~ld~~l~~g-------~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~I  205 (224)
                      .+..++.+..++.  ...++++..|       ...-..|.....+|..+...+..-...++..+.=++.+.++... .|.
T Consensus       154 ~e~~l~~~~~~QE--~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~  230 (251)
T PF09753_consen  154 LEKILQHHRNLQE--DLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWT  230 (251)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHH
Confidence            3566666666664  3456666555       44667788899999999998888888888888877777655544 444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 027389          206 LALVASVCTFLIFIYWV  222 (224)
Q Consensus       206 l~~vi~~~i~~~~~~~~  222 (224)
                      +.+++++|++|++.|+|
T Consensus       231 ~~~i~~v~~~Fi~mvl~  247 (251)
T PF09753_consen  231 WLMIFVVIIVFIMMVLF  247 (251)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444445555544444

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=96.29  E-value=0.072  Score=38.40  Aligned_cols=63  Identities=13%  Similarity=0.183  Sum_probs=40.2

Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhh
Q 027389          141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT  203 (224)
Q Consensus       141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~  203 (224)
                      +.+..-...++++-+.-.+-.+.+-+-.+.|.....|-.++...-..-.+--+.+.++..-..
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~   65 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRN   65 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            456666777777777777777777777777777777666665544444444444454444333

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=0.24  Score=37.72  Aligned_cols=84  Identities=15%  Similarity=0.286  Sum_probs=57.4

Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhh---ccCCc-HHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 027389          140 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVS---SRLPS-VNQILSSIKRKKSMDTIILALVASVCTF  215 (224)
Q Consensus       140 ~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~---~~l~~-s~~ll~~I~rR~~rd~~Il~~vi~~~i~  215 (224)
                      ..++++....+|++.++-..=.+..-+=-+.|....+|-..+.   +.|-. +.++=+++=.+..+-++|++.|++++++
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~  107 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV  107 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578889999999999887755555555556666655544433   33433 3445566777778888888888877777


Q ss_pred             HHHHHHHh
Q 027389          216 LIFIYWVT  223 (224)
Q Consensus       216 ~~~~~~~~  223 (224)
                      ++++|+|.
T Consensus       108 iiii~~~~  115 (116)
T KOG0860|consen  108 VIIIYIFL  115 (116)
T ss_pred             HHHHHHhc
Confidence            77777664

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.14  E-value=0.095  Score=39.80  Aligned_cols=82  Identities=6%  Similarity=0.101  Sum_probs=49.4

Q ss_pred             HHhhH-HhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhh--hHHHHHHHHHHH
Q 027389          138 KEHAS-INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD--TIILALVASVCT  214 (224)
Q Consensus       138 ~e~~~-L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd--~~Il~~vi~~~i  214 (224)
                      +|+++ ++.=...+--+=.....|-.+...|+..|.+..+-+..+   -+...++|.++..=.++.  ++..|..+++++
T Consensus        32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdst---s~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV  108 (118)
T KOG3385|consen   32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDST---SGFLSGTMGRLKTMARRSGISLLCWMAVFSLV  108 (118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhh---HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            44444 333334455555667778888899999999988765544   455556666665555555  344465555555


Q ss_pred             HHHHHHHH
Q 027389          215 FLIFIYWV  222 (224)
Q Consensus       215 ~~~~~~~~  222 (224)
                      .||++|||
T Consensus       109 ~~fi~~~~  116 (118)
T KOG3385|consen  109 AFFILWVW  116 (118)
T ss_pred             HHHHhhee
Confidence            55544443

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=2.2  Score=37.61  Aligned_cols=211  Identities=15%  Similarity=0.167  Sum_probs=111.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc---hhH---HhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 027389            4 PSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVD---AAE---NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMV   77 (224)
Q Consensus         4 ~~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~---~~~---~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~   77 (224)
                      |+.|-+.-.++...=..+..++..+.+.-..+.-|.-+   .++   ..+..+|..+|..-+..+.....-...++|...
T Consensus        56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~  135 (305)
T KOG0809|consen   56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSER  135 (305)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH
Confidence            46788888888888888888888888875544222111   111   234445555555555555554433322333322


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh----hccccc--ccccccccCCCCCCHHHHHHH---------
Q 027389           78 S---HTLTRHQEILQDLTQEFYRLRSSLKA-KQEHASL----LEDFRE--FDRTRLDLEDGVGSPEQALLK---------  138 (224)
Q Consensus        78 ~---~~l~r~r~~L~~~~~ef~rlk~~~~~-~~~R~eL----l~~~~~--~~~~~~d~~~~~~~~~~~ll~---------  138 (224)
                      .   +...-+-..|+....+|+..+..+-. -+.|++=    +.+.-.  ..+...|.+.. ...+++++.         
T Consensus       136 ~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~-~~qe~ql~~~e~~~~~~~  214 (305)
T KOG0809|consen  136 LLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDR-TFQEQQLMLFENNEEVVR  214 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhh-hHHHHHHHHHhcchHHHH
Confidence            1   34455667888889999988877633 2223221    111000  00000111111 111222222         


Q ss_pred             HhhHHhhhHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHH-HHHHHHHHH
Q 027389          139 EHASINRSTGQMDSVISQA---QATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTII-LALVASVCT  214 (224)
Q Consensus       139 e~~~L~~S~~~ld~~l~~g---~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~I-l~~vi~~~i  214 (224)
                      ||++  .-...+..+++.+   ...-.-...|.-.+.++-=-+.++.-++....+=+.++++..++++-. +.+|.++|+
T Consensus       215 erE~--EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~i  292 (305)
T KOG0809|consen  215 EREK--EVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLI  292 (305)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHH
Confidence            2221  1122222222222   122223357888888888888888888888999999999999988532 233333444


Q ss_pred             HHH
Q 027389          215 FLI  217 (224)
Q Consensus       215 ~~~  217 (224)
                      |++
T Consensus       293 i~l  295 (305)
T KOG0809|consen  293 IAL  295 (305)
T ss_pred             HHH
Confidence            443

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=94.04  E-value=0.2  Score=34.58  Aligned_cols=52  Identities=19%  Similarity=0.193  Sum_probs=39.7

Q ss_pred             HHHHHhHHHHhhccCCcHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027389          171 FGGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIILALVASVCTFLIFIYWV  222 (224)
Q Consensus       171 L~~~~~rl~~~~~~l~~s~~-ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~~  222 (224)
                      +..+.+||..+...+-..|. +.+++.++.-||-=|++|+++.+++++++..+
T Consensus        14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l   66 (70)
T PF04210_consen   14 FNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVL   66 (70)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888877777776 78899999999999997777667766665544

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=92.85  E-value=5.8  Score=34.27  Aligned_cols=148  Identities=16%  Similarity=0.241  Sum_probs=79.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHhhccccc-
Q 027389           44 ENDLESGIDWLLKQLQQVNIQMQDWVS---SGGSEMVSHTLTRHQEILQDLT-QEFYRLRSSLKAK-QEHASLLEDFRE-  117 (224)
Q Consensus        44 ~~~l~~eI~~~L~~~~~~~~~m~~~v~---~~~~~~~~~~l~r~r~~L~~~~-~ef~rlk~~~~~~-~~R~eLl~~~~~-  117 (224)
                      -..+...|......+.++++++..+-.   ..|+..+...+..-+..|.+.+ ++|...+.....+ .+=..||..+.. 
T Consensus        89 a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~  168 (264)
T PF06008_consen   89 AQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKW  168 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            366888999999999999999987665   2333344444554455555553 2355555444333 234556666542 


Q ss_pred             ccccccccCCCC-CCHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHH
Q 027389          118 FDRTRLDLEDGV-GSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL  192 (224)
Q Consensus       118 ~~~~~~d~~~~~-~~~~~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll  192 (224)
                      |.....+. .+. ..-.+.|-+....|..-...+++..+...++-.-....+..|..+.+|...+...-..++.+|
T Consensus       169 ~~~~~~~~-~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L  243 (264)
T PF06008_consen  169 FQKPQQEN-ESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL  243 (264)
T ss_pred             HhhHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11110011 111 111245555556666666666666655555555555555555555555555554444444433

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=91.87  E-value=0.54  Score=32.46  Aligned_cols=46  Identities=26%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             HHHHhHHHHhhccCCcHHH-HHHHHHhhhhhhhHHH-HHHHHHHHHHH
Q 027389          172 GGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIIL-ALVASVCTFLI  217 (224)
Q Consensus       172 ~~~~~rl~~~~~~l~~s~~-ll~~I~rR~~rd~~Il-~~vi~~~i~~~  217 (224)
                      ..+++||-++...+...|. +-++|..+.-||-=|| |.||+..++++
T Consensus        18 ne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i   65 (75)
T COG4064          18 NEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMI   65 (75)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3455555555555555555 6788899999998888 55554444443

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=91.25  E-value=4.5  Score=29.54  Aligned_cols=91  Identities=8%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--Cchhh---HHH
Q 027389            6 SWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSG--GSEMV---SHT   80 (224)
Q Consensus         6 ~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~--~~~~~---~~~   80 (224)
                      +|-..+.++...=..++..+.++..+....+   ...+...+..++...|+.+...++.++..|.-.  .|.+.   ...
T Consensus         2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~---~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~E   78 (97)
T PF09177_consen    2 PFFVVKDEVQSSLDRLESLYRRWQRLRSDTS---SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEE   78 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHH
Confidence            4667777777777777888888887766433   345566777888888888888888887666521  23222   155


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 027389           81 LTRHQEILQDLTQEFYRLR   99 (224)
Q Consensus        81 l~r~r~~L~~~~~ef~rlk   99 (224)
                      +.++|.-+.+.+.+.+.++
T Consensus        79 i~~Rr~fv~~~~~~i~~~k   97 (97)
T PF09177_consen   79 ISRRRQFVSAIRNQIKQMK   97 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            7888888888887766553

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=91.21  E-value=0.82  Score=31.55  Aligned_cols=49  Identities=18%  Similarity=0.254  Sum_probs=35.1

Q ss_pred             HHHHHhHHHHhhccCCcHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 027389          171 FGGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIILALVASVCTFLIFI  219 (224)
Q Consensus       171 L~~~~~rl~~~~~~l~~s~~-ll~~I~rR~~rd~~Il~~vi~~~i~~~~~  219 (224)
                      ++.+++||..+..++-..|. +-+++.++.-||-=|++|+++.+++++++
T Consensus        14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~   63 (70)
T TIGR01149        14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIY   63 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777776 77889999999998886555455444433

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=91.13  E-value=0.79  Score=32.33  Aligned_cols=48  Identities=21%  Similarity=0.271  Sum_probs=34.3

Q ss_pred             HHHHHhHHHHhhccCCcHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 027389          171 FGGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIILALVASVCTFLIF  218 (224)
Q Consensus       171 L~~~~~rl~~~~~~l~~s~~-ll~~I~rR~~rd~~Il~~vi~~~i~~~~  218 (224)
                      ++.+++||.++..++-..|. +-+++..+.-||-=|++|+++.++++++
T Consensus        17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i   65 (77)
T PRK01026         17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLV   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHH
Confidence            45667777777777777766 7788999999999888655544444443

>PRK09546 zntB zinc transporter; Reviewed

Probab=89.68  E-value=14  Score=32.75  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389           47 LESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA  104 (224)
Q Consensus        47 l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~  104 (224)
                      +.......++++++-++.++..+.+.+.+.        +..+..++++.-+++..+..
T Consensus       151 ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~--------~~~l~~lrr~l~~lrr~l~p  200 (324)
T PRK09546        151 LTDHASEFIEELHDKIIDLEDNLLDQQIPP--------RGELALLRKQLIVMRRYMAP  200 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--------HHHHHHHHHHHHHHHHHHHH
Confidence            334445555566666666655554332111        12566777777777666544

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]

Probab=88.70  E-value=5.6  Score=33.99  Aligned_cols=28  Identities=11%  Similarity=0.099  Sum_probs=16.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027389           46 DLESGIDWLLKQLQQVNIQMQDWVSSGG   73 (224)
Q Consensus        46 ~l~~eI~~~L~~~~~~~~~m~~~v~~~~   73 (224)
                      .+.......++.+.+-++.++..+.+.+
T Consensus       118 ~~~~~~~~~l~~l~~~l~~le~~~~~~~  145 (292)
T PF01544_consen  118 EIVDDYFEVLEELEDELDELEDELDDRP  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            3445555666666666666666664444

CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.98  E-value=22  Score=30.01  Aligned_cols=166  Identities=14%  Similarity=0.114  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhHHHHHHHHHHHHH
Q 027389           14 ARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSE---MVSHTLTRHQEILQD   90 (224)
Q Consensus        14 ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~---~~~~~l~r~r~~L~~   90 (224)
                      .-..|.++....+..++-+..++    ...    -.|=...+.+++.-++..+.++....-.   .-.+...-|..+|++
T Consensus         5 fe~yEqqy~~l~a~it~k~~~~~----~~~----~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~   76 (220)
T KOG1666|consen    5 FEGYEQQYRELSAEITKKIGRAL----SLP----GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLRE   76 (220)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHh----cCC----chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHH
Confidence            34567777777777776655422    111    2233456677777777777777655421   122567778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccccccC-CCCCCHHHHHHHHhhHHhhhHHHHH-------HHHHHHHHHHH
Q 027389           91 LTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLE-DGVGSPEQALLKEHASINRSTGQMD-------SVISQAQATLG  162 (224)
Q Consensus        91 ~~~ef~rlk~~~~~~~~R~eLl~~~~~~~~~~~d~~-~~~~~~~~~ll~e~~~L~~S~~~ld-------~~l~~g~~~l~  162 (224)
                      |++++++++..++....+.-..+.       ..+.. ....+.....-+.+.+|-.++..+.       +-..+|.+| +
T Consensus        77 yksdl~~l~~e~k~~~~~~~~~~~-------rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ET-E  148 (220)
T KOG1666|consen   77 YKSDLKKLKRELKRTTSRNLNAGD-------RDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALET-E  148 (220)
T ss_pred             HHHHHHHHHHHHHHhhccccccch-------HHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHH-H
Confidence            999999999888776522111111       00000 0001111234455666655554443       223333333 3


Q ss_pred             HHHHh-HHHHHHHHhHHHHhhccCCcHHHHHHHH
Q 027389          163 ALVFQ-RSTFGGINSKLSNVSSRLPSVNQILSSI  195 (224)
Q Consensus       163 ~L~~Q-r~~L~~~~~rl~~~~~~l~~s~~ll~~I  195 (224)
                      .+..| =+-|.+-+..|...-.+|...+.-+++=
T Consensus       149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS  182 (220)
T KOG1666|consen  149 QIGSEILEDLHGQREQLERARERLRETDANLGKS  182 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHH
Confidence            33333 2457777778888777887777777653

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=83.93  E-value=18  Score=33.71  Aligned_cols=104  Identities=18%  Similarity=0.221  Sum_probs=55.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH--------hhhc---------cCCCC------------Cchh-HHhHHHHHHHH
Q 027389            5 SSWDALRKQARKLEAQLDEQMHSYRK--------LVSS---------KGSTK------------VDAA-ENDLESGIDWL   54 (224)
Q Consensus         5 ~~w~~lr~~ar~lE~~i~~kl~~~s~--------~~~~---------~~~~~------------~~~~-~~~l~~eI~~~   54 (224)
                      .+.++||+++..||+.++..--.+..        +.+.         -|.++            ...+ -..+.    ..
T Consensus       179 ~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~----~h  254 (552)
T KOG2129|consen  179 NTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEK----LH  254 (552)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHH----HH
Confidence            57899999999999998865444332        2111         01110            1111 11122    23


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027389           55 LKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLE  113 (224)
Q Consensus        55 L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~~~~R~eLl~  113 (224)
                      ++.+..-++++..++....- ..+-.+.+|+..=.+.+.|..|++..+....+|-|-|.
T Consensus       255 i~~l~~EveRlrt~l~~Aqk-~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealc  312 (552)
T KOG2129|consen  255 IDKLQAEVERLRTYLSRAQK-SYQEKLMQYRAEEVDHREENERLQRKLINELERREALC  312 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555544433210 12234666777777777777777777777666655554

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.49  E-value=20  Score=32.04  Aligned_cols=77  Identities=14%  Similarity=0.121  Sum_probs=54.0

Q ss_pred             HHHHHHhhHHhhhHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhh
Q 027389          134 QALLKEHASINRSTGQMDSVISQAQ-----------ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD  202 (224)
Q Consensus       134 ~~ll~e~~~L~~S~~~ld~~l~~g~-----------~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd  202 (224)
                      +.+-.|+.+|.+-.+.+++-+.+-.           -.-+-+-.|=..+..+++-..++...+..+|.=|+++.+...+.
T Consensus       214 Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~  293 (316)
T KOG3894|consen  214 QLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGL  293 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccc
Confidence            3444678887777665554443332           13445667778888888888889999999999999998888777


Q ss_pred             h-HHHHHHH
Q 027389          203 T-IILALVA  210 (224)
Q Consensus       203 ~-~Il~~vi  210 (224)
                      + |++++.+
T Consensus       294 r~~~lf~ll  302 (316)
T KOG3894|consen  294 RVFLLFFLL  302 (316)
T ss_pred             hhHHHHHHH
Confidence            4 5665444

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=82.14  E-value=31  Score=29.44  Aligned_cols=85  Identities=15%  Similarity=0.157  Sum_probs=52.9

Q ss_pred             HHHHHHHhhHHhh----hHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHH
Q 027389          133 EQALLKEHASINR----STGQMD-SVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA  207 (224)
Q Consensus       133 ~~~ll~e~~~L~~----S~~~ld-~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~  207 (224)
                      .|+.+..++.++.    |--.+- .+=..+.+.-+.|..-++++..+-.-+-.-...|+-.+.=+.+=...+.=+++-++
T Consensus       142 ~dq~l~~q~~lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~  221 (244)
T KOG2678|consen  142 VDQQLEDQDTLQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYIT  221 (244)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHH
Confidence            5666666665543    222222 22233455667788888888887776666666777777766666666665666667


Q ss_pred             HHHHHHHHHH
Q 027389          208 LVASVCTFLI  217 (224)
Q Consensus       208 ~vi~~~i~~~  217 (224)
                      .+|++|+.|+
T Consensus       222 miI~v~~sFV  231 (244)
T KOG2678|consen  222 MIIFVILSFV  231 (244)
T ss_pred             HHHHHHHHHH
Confidence            6777776665

>smart00397 t_SNARE Helical region found in SNAREs

Probab=81.30  E-value=10  Score=24.63  Aligned_cols=55  Identities=11%  Similarity=0.106  Sum_probs=46.1

Q ss_pred             HHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHH
Q 027389          138 KEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL  192 (224)
Q Consensus       138 ~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll  192 (224)
                      .-...|.+....+-++-+++..+-..+..|++.|.++...+..+...+.....-+
T Consensus         9 ~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l   63 (66)
T smart00397        9 ERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRL   63 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4455688888999999999999999999999999999999988887766655433

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.20  E-value=24  Score=29.62  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027389           83 RHQEILQDLTQEFYRLRSSLKA  104 (224)
Q Consensus        83 r~r~~L~~~~~ef~rlk~~~~~  104 (224)
                      ..++.|..+++|+..++.++..
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~  111 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNN  111 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Confidence            3466788888888888766655

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=81.19  E-value=5  Score=26.92  Aligned_cols=27  Identities=4%  Similarity=-0.075  Sum_probs=15.3

Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 027389          191 ILSSIKRKKSMDTIILALVASVCTFLI  217 (224)
Q Consensus       191 ll~~I~rR~~rd~~Il~~vi~~~i~~~  217 (224)
                      ...+-.+|.++-++|+.++++++++++
T Consensus        27 ~~~k~qk~~~~~~~i~~~~~i~~l~v~   53 (59)
T PF09889_consen   27 EYRKRQKRMRKTQYIFFGIFILFLAVW   53 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666788866654444433

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=80.71  E-value=18  Score=25.71  Aligned_cols=65  Identities=11%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 027389          150 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW  221 (224)
Q Consensus       150 ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~~~~~~  221 (224)
                      +|.+++.| +-+++|..+=+.|......+..-      +..+=+.+-.+..+=.+|++++++++++++++++
T Consensus        23 i~~ll~Rg-e~L~~L~~kt~~L~~~a~~F~k~------a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~   87 (89)
T PF00957_consen   23 IDKLLERG-EKLEELEDKTEELSDNAKQFKKN------AKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI   87 (89)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC-chHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence            34444444 24566666666666555555543      3456677788888888888877766555555543

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=80.35  E-value=14  Score=24.23  Aligned_cols=59  Identities=10%  Similarity=0.094  Sum_probs=49.6

Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhh
Q 027389          141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK  199 (224)
Q Consensus       141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~  199 (224)
                      +.|..=...+.++-.++..+-..+..|.+.|.++...+..+...+...+.=|.+..+++
T Consensus         4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~   62 (63)
T PF05739_consen    4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35666677788888999999999999999999999999999998888887777666554

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 32/227 (14%), Positives = 71/227 (31%), Gaps = 65/227 (28%)

Query: 17  LEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEM 76
           ++ +  E  + Y+ ++    S   DA  ++ +          + V    +  +S    E 
Sbjct: 7   MDFETGEHQYQYKDIL----SVFEDAFVDNFD---------CKDVQDMPKSILS---KEE 50

Query: 77  VSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL 136
           + H +     +         RL  +L +KQE   +++ F         +E+ +       
Sbjct: 51  IDHIIMSKDAVSG-----TLRLFWTLLSKQE--EMVQKF---------VEEVL-RINYKF 93

Query: 137 LKE--HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLS--NVSSRLPSVNQIL 192
           L         + +      I            QR      N   +  NV SRL    ++ 
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIE-----------QRDRLYNDNQVFAKYNV-SRLQPYLKLR 141

Query: 193 SSIKRKKSMDTIIL---------ALVASVC------TFLIF-IYWVT 223
            ++   +    +++          +   VC        + F I+W+ 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2nps_C	81	Vesicle transport through interaction with T- snar	99.14
2qyw_A	102	Vesicle transport through interaction with T-SNAR	98.91
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	98.87
1vcs_A	102	Vesicle transport through interaction with T- snar	98.8
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	98.77
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	98.23
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	97.81
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	96.29
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	95.61
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	94.98
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	94.39
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	91.29
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	89.28
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	88.53
2iub_A	363	CORA, divalent cation transport-related protein; m	88.46
2l34_A	33	TYRO protein tyrosine kinase-binding protein; immu	88.02
4ev6_A	339	Magnesium transport protein CORA; membrane protein	82.24

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.14  E-value=1.4e-10  Score=82.24  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=64.8

Q ss_pred             HHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhhhhhhh
Q 027389          134 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT  203 (224)
Q Consensus       134 ~~ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR~~rd~  203 (224)
                      +.|-+-.++|++|.+.+.++.++|.+|+.+|+.||++|.++++++.+++..++.+.++|+.|.||..+||
T Consensus        12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C           12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            5667778889999999999999999999999999999999999999999999999999999999998875

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=98.91  E-value=6.9e-09  Score=76.67  Aligned_cols=87  Identities=10%  Similarity=0.102  Sum_probs=71.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 027389            5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH   84 (224)
Q Consensus         5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~   84 (224)
                      .-|+.+-.++..+-.+|..+|..+...       .++++++....+|+..|+++.++|++|+.++++.|++.    ...|
T Consensus        15 elFe~YE~df~~l~~~i~~kl~~i~~~-------~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~----R~~~   83 (102)
T 2qyw_A           15 EHFEKLHEIFRGLLEDLQGVPERLLGT-------AGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTF----RNPM   83 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC-------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH----HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHH
Confidence            478899999999999998888875321       13377888999999999999999999999999998643    4567


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 027389           85 QEILQDLTQEFYRLRSSL  102 (224)
Q Consensus        85 r~~L~~~~~ef~rlk~~~  102 (224)
                      ..+|++|++|+.+++.++
T Consensus        84 ~~klr~Yk~dL~~lk~el  101 (102)
T 2qyw_A           84 MSKLRNYRKDLAKLHREV  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            778889998888887765

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=98.87  E-value=2e-09  Score=73.21  Aligned_cols=62  Identities=24%  Similarity=0.268  Sum_probs=56.1

Q ss_pred             HHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHh
Q 027389          136 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR  197 (224)
Q Consensus       136 ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~r  197 (224)
                      |-+-.++|++|.+.+.++.++|.+|+.+|+.||++|.+++.++.+++..+..+.++|+.|.|
T Consensus         4 L~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            4 MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            34567899999999999999999999999999999999999999999999999999998864

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=98.80  E-value=2.4e-08  Score=73.78  Aligned_cols=88  Identities=15%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 027389            5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH   84 (224)
Q Consensus         5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~   84 (224)
                      .-|+.+-.++..+-.+|..+|..+..+        ++++++....+|+..|+++.++|++|+.++++.||+.    ...|
T Consensus         5 elFe~YE~df~~l~~~i~~kl~~i~~~--------~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~----R~~~   72 (102)
T 1vcs_A            5 SSGEGYEQDFAVLTAEITSKIARVPRL--------PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQS----RGMY   72 (102)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHGGGS--------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT----HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHh----HHHH
Confidence            467888889999999999998875432        3367888999999999999999999999999998653    3456


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 027389           85 QEILQDLTQEFYRLRSSLKA  104 (224)
Q Consensus        85 r~~L~~~~~ef~rlk~~~~~  104 (224)
                      ..+|++|+.|+.+++..++.
T Consensus        73 ~~klr~Yk~dL~~lk~elk~   92 (102)
T 1vcs_A           73 SNRMRSYKQEMGKLETDFKR   92 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66888888888887777654

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=98.77  E-value=1e-07  Score=69.76  Aligned_cols=88  Identities=9%  Similarity=0.032  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhHHHHHH
Q 027389            6 SWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSG--GSEMVSHTLTR   83 (224)
Q Consensus         6 ~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~--~~~~~~~~l~r   83 (224)
                      -|+++-.++..+-.+|..+|..+..        .++++++....+|+..++++.++|++|+.++++.  ||+.    ...
T Consensus         2 lF~~YE~df~~~~~~i~~~l~~~~~--------~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~----R~~   69 (97)
T 3onj_A            2 LLISYESDFKTTLEQAKASLAEAPS--------QPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASE----RAT   69 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGG--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhc--------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHH
Confidence            3777888888888888888876541        2447889999999999999999999999999999  6542    456


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHH
Q 027389           84 HQEILQDLTQEFYR-LRSSLKAK  105 (224)
Q Consensus        84 ~r~~L~~~~~ef~r-lk~~~~~~  105 (224)
                      |..+|++|++|+.+ ++..++..
T Consensus        70 ~~~klr~Yk~dl~~~lk~~lk~l   92 (97)
T 3onj_A           70 YKAKLREWKKTIQSDIKRPLQSL   92 (97)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            77788888888888 88777653

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=98.23  E-value=4.6e-06  Score=58.55  Aligned_cols=61  Identities=11%  Similarity=0.102  Sum_probs=56.9

Q ss_pred             HHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHH
Q 027389          136 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK  196 (224)
Q Consensus       136 ll~e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~  196 (224)
                      +-...+++++|.+.+.++.+.|.+|+.+|..||+.|.+++++|.++++.+..+.++|+.|.
T Consensus        18 ~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C           18 ADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            3345678999999999999999999999999999999999999999999999999999886

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=97.81  E-value=2.4e-05  Score=50.86  Aligned_cols=52  Identities=15%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHH
Q 027389          144 NRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI  195 (224)
Q Consensus       144 ~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I  195 (224)
                      ++|.+.+.+..+.|..|+..|..||+.|.++.+.|.++++.+..+.++|+.|
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m   54 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence            5788999999999999999999999999999999999999999999888753

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=96.29  E-value=0.014  Score=39.72  Aligned_cols=57  Identities=16%  Similarity=0.213  Sum_probs=51.2

Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHh
Q 027389          141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR  197 (224)
Q Consensus       141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~r  197 (224)
                      ++-+++.+++.+..+.|..|+..|..|.+.|.++.+.|-.+...+..+..-+..|+.
T Consensus        12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C           12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456777888889999999999999999999999999999999999999888887764

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=95.61  E-value=0.0069  Score=42.58  Aligned_cols=55  Identities=16%  Similarity=0.157  Sum_probs=46.3

Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHH
Q 027389          141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI  195 (224)
Q Consensus       141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I  195 (224)
                      ++.+++.+++.+.-..|..|+..|..|++.|.++.+.|-.+.+.+..+.+.|+.|
T Consensus        27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L   81 (83)
T 1l4a_C           27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4566777778888899999999999999999999999999998887776665544

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=94.98  E-value=0.18  Score=35.70  Aligned_cols=80  Identities=13%  Similarity=0.278  Sum_probs=43.1

Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhcc---CC-cHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 027389          141 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSR---LP-SVNQILSSIKRKKSMDTIILALVASVCTFL  216 (224)
Q Consensus       141 ~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~---l~-~s~~ll~~I~rR~~rd~~Il~~vi~~~i~~  216 (224)
                      +.|......+||+-++-..-.+.+-+-.+.|....+|-.++...   |- .+..+=+.|-.+..+=++|++++++ ++++
T Consensus         5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~-~il~   83 (91)
T 3hd7_A            5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICA-IILI   83 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            45666666666666666666666666666666555554444432   22 2233444555555555566665553 3334


Q ss_pred             HHHHH
Q 027389          217 IFIYW  221 (224)
Q Consensus       217 ~~~~~  221 (224)
                      +++.|
T Consensus        84 ii~~~   88 (91)
T 3hd7_A           84 IIIVY   88 (91)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            34433

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=94.39  E-value=0.8  Score=34.56  Aligned_cols=96  Identities=5%  Similarity=0.094  Sum_probs=64.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhh---H
Q 027389            5 SSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVS---SGGSEMV---S   78 (224)
Q Consensus         5 ~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~---~~~~~~~---~   78 (224)
                      -+|-..+.++.+.=+.++..+.+|..+....+++ +..+...+..|+...|..+...++.++.-|.   +.| .+.   .
T Consensus        27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~-s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np-~kF~l~~  104 (130)
T 4dnd_A           27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAV-GREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP-GKFKLPA  104 (130)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHCCCH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH-HhcCCCH
Confidence            4899999999888888888888888776543222 2345566777778888777777777776554   222 211   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 027389           79 HTLTRHQEILQDLTQEFYRLRSSL  102 (224)
Q Consensus        79 ~~l~r~r~~L~~~~~ef~rlk~~~  102 (224)
                      ..+.+.|.-+.+.+.+.+.++..+
T Consensus       105 ~Ei~~Rr~fV~~~r~~I~~mk~~l  128 (130)
T 4dnd_A          105 GDLQERKVFVERMREAVQEMKDHM  128 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            458888888888888888887654

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=91.29  E-value=3  Score=30.25  Aligned_cols=56  Identities=5%  Similarity=-0.060  Sum_probs=40.1

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHHHHHHHHhh
Q 027389          143 INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK  198 (224)
Q Consensus       143 L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~ll~~I~rR  198 (224)
                      +.+=.+.+-++-++-...-.-...|.+.+.++-.-+.++...+...+.=+.+-.+.
T Consensus        23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~y   78 (109)
T 3hd7_B           23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   78 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555555667899999999999999999999888877655433

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=89.28  E-value=0.14  Score=38.26  Aligned_cols=75  Identities=9%  Similarity=0.224  Sum_probs=46.8

Q ss_pred             HhhHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhhccCCcHHH----HHHHHHhhhhhhhHHHHHHHHHH
Q 027389          139 EHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ----ILSSIKRKKSMDTIILALVASVC  213 (224)
Q Consensus       139 e~~~L~~S~~~ld~~l~~g~~~l~~L~~Qr~~L~~~~~rl~~~~~~l~~s~~----ll~~I~rR~~rd~~Il~~vi~~~  213 (224)
                      +.+.|......+|++-++-..-.+.+-+-.+.|....+|-.++...-..-.+    +-+++-.+..+=.+|++++++++
T Consensus        31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii  109 (119)
T 2kog_A           31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII  109 (119)
T ss_dssp             SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568888889999999988888888888777777666665554443333333    33334444444444555454333

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=88.53  E-value=7.6  Score=30.42  Aligned_cols=102  Identities=11%  Similarity=-0.000  Sum_probs=59.2

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhH-------HhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027389            1 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAE-------NDLESGIDWLLKQLQQVNIQMQDWVSSGG   73 (224)
Q Consensus         1 ~~~~~~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~-------~~l~~eI~~~L~~~~~~~~~m~~~v~~~~   73 (224)
                      |+.|+.|-..=.+....=..|..++..+.++-....++....+.       ..+..+|..+...+...+..|....... 
T Consensus         1 ~~~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~-   79 (196)
T 1fio_A            1 MHDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHD-   79 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-
Confidence            44466788877888888888888888888886553322122221       2244555556666666666666543221 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389           74 SEMVSHTLTRHQEILQDLTQEFYRLRSSLKA  104 (224)
Q Consensus        74 ~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~  104 (224)
                       ...+.....+...|.+.-.+|+.+...+..
T Consensus        80 -r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~  109 (196)
T 1fio_A           80 -TNKQAQAENSRQRFLKLIQDYRIVDSNYKE  109 (196)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             112233455556666666677666666544

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=88.46  E-value=12  Score=32.52  Aligned_cols=51  Identities=14%  Similarity=0.139  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389           47 LESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA  104 (224)
Q Consensus        47 l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~  104 (224)
                      +....-..++++.+-++.++..+.+.+....   +    ..+..+++++-+++..+..
T Consensus       189 ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~---l----~~l~~lrr~l~~lrr~l~p  239 (363)
T 2iub_A          189 LVDDYFVLLEKIDDEIDVLEEEVLERPEKET---V----QRTHQLKRNLVELRKTIWP  239 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHH---H----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHH---H----HHHHHHHHHHHHHHHHHHH
Confidence            3344455566777777777777665543211   2    2566677777666666644

>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B

Probab=88.02  E-value=0.59  Score=26.81  Aligned_cols=21  Identities=10%  Similarity=0.352  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC
Q 027389          204 IILALVASVCTFLIFIYWVTK  224 (224)
Q Consensus       204 ~Il~~vi~~~i~~~~~~~~~k  224 (224)
                      +|+|-++++.++.+++|||+|
T Consensus        12 IVvgdi~~t~~i~~~vy~~~r   32 (33)
T 2l34_A           12 IVVGDLVLTVLIALAVYFLGR   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             EeHHHHHHHHHHHHHHhheec
Confidence            466777777777778888876

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=82.24  E-value=23  Score=30.28  Aligned_cols=50  Identities=20%  Similarity=0.239  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027389           48 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA  104 (224)
Q Consensus        48 ~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk~~~~~  104 (224)
                      .......++++++-++.++..+.+.+....   +    ..+.++++++-.++..+..
T Consensus       166 vd~~~~~l~~l~~~i~~lE~~l~~~~~~~~---l----~~l~~lrr~l~~lrr~l~~  215 (339)
T 4ev6_A          166 TRSYSRILMNLEDELEELEDKLLAGYDREV---M----EKILGLRKTLVYFHKSLIA  215 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCCCHHH---H----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhH---H----HHHHHHHHHHHHHHHHhhh
Confidence            334445556666666666665554443221   2    2455666666666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	99.01
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	91.45
d1lvfa_	106	Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu	84.54

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.8e-09  Score=76.08  Aligned_cols=83  Identities=13%  Similarity=0.150  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHH
Q 027389           11 RKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQD   90 (224)
Q Consensus        11 r~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~   90 (224)
                      -.++..+-.+|..||...+.+        ++++++....+|+..|+++.+++++|+++|++.||+.    ...|..+|++
T Consensus         4 E~~y~~l~a~i~~kl~~i~~~--------~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~----R~~~~~klr~   71 (89)
T d1vcsa1           4 EQDFAVLTAEITSKIARVPRL--------PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQS----RGMYSNRMRS   71 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGS--------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcC--------CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHH
Confidence            345666666666666554431        3467899999999999999999999999999999764    3445567888


Q ss_pred             HHHHHHHHHHHHHHH
Q 027389           91 LTQEFYRLRSSLKAK  105 (224)
Q Consensus        91 ~~~ef~rlk~~~~~~  105 (224)
                      |+.|+.+++..++.+
T Consensus        72 Yk~dl~~lk~elk~a   86 (89)
T d1vcsa1          72 YKQEMGKLETDFKRS   86 (89)
T ss_dssp             HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888888887777654

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.45  E-value=0.46  Score=31.79  Aligned_cols=47  Identities=19%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 027389           49 SGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLR   99 (224)
Q Consensus        49 ~eI~~~L~~~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~ef~rlk   99 (224)
                      .|.+.+|++++--+..+    .....+.+..++..|+..|..++.+|++.+
T Consensus        41 eEA~ell~qMelEvr~~----p~s~R~~~~~klr~Yk~dl~~lk~elk~a~   87 (89)
T d1vcsa1          41 EEARELLEQMDLEVREI----PPQSRGMYSNRMRSYKQEMGKLETDFKRSR   87 (89)
T ss_dssp             HHHHHHHHHHHHHHTTS----CTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35556666666544443    344545566889999999999999999875

>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.54  E-value=4.3  Score=27.43  Aligned_cols=96  Identities=6%  Similarity=0.108  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhhH---H
Q 027389            6 SWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVS---SGGSEMVS---H   79 (224)
Q Consensus         6 ~w~~lr~~ar~lE~~i~~kl~~~s~~~~~~~~~~~~~~~~~l~~eI~~~L~~~~~~~~~m~~~v~---~~~~~~~~---~   79 (224)
                      +|-..+.+.-.-=+.+...+..|..+.....+ .+..+...+..++...|..+..-++.++..|.   +.| .+..   .
T Consensus         3 PF~~v~~EVq~s~~~~~~l~~~w~~~~~~~~~-~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np-~kf~l~~~   80 (106)
T d1lvfa_           3 PFFVVKGEVQKAVNTAQGLFQRWTELLQGPSA-ATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANP-RKFNLDAT   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGGTCCHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCH-HhcCCCHH
Confidence            35555666666666666667777766654322 23344456677777777777777777776554   333 2221   5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 027389           80 TLTRHQEILQDLTQEFYRLRSSLK  103 (224)
Q Consensus        80 ~l~r~r~~L~~~~~ef~rlk~~~~  103 (224)
                      .+.++|.-+..++.+.+.++..+.
T Consensus        81 ei~~Rr~fi~~~~~~I~~~~~~l~  104 (106)
T d1lvfa_          81 ELSIRKAFITSTRQIVRDMKDQMS  104 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            688889999888888888877654