Citrus Sinensis ID: 027395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEKQEPLENEDHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASRIPESIELEAASFFDGNEVPVPPNSKKKGGIHQCVNITMHEQTHPPVSTQRINT
Secondary Structure (PSIPRED)
cccccccHHccccccccccccccccccHHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEccHHHHHHHHHHHHcccccccccHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCdtdvgllmfspsgkltkysssrRIEDIFLRFIcdekqeplenedHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQFdaeekmsfyqpkvedITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASRIPESIELEaasffdgnevpvppnskkkggihqcvnitmheqthppvstqrint
Flexible Loop (DISEMBL)
mgrrkllmqkidnypalqvtytkrrdGIVKKAKELSVLcdtdvgllmfspsgkltkysssrRIEDIFLRFIcdekqeplenedHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASRIPESIELEAASFFDGNEVPVPPNSKKKGGIHQCVNItmheqthppvstqrint
Low Complexity Region (SEG)
MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEKQEPLENEDHLYRSLVHSKCEGemldlikkkeelekklielCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASRIPESIELEAASFFDGNEVPVPPNSKKKGGIHQCVNITMHEQTHPPVSTQRINT
Disordered region (IsUnstruct)
*******MQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEKQEPLENEDHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNA*****************************************QCVN******************
Disordered Region (DISOPRED)
MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD*******************************************************************EAVDH*******************************************************************************
Disordered Region (DISEMBL)
MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEKQEPLENEDHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASRIPESIELEAASFFDGNEVPVPPNSKKKGGIHQCVNITMHEQTH**********
Disordered Region (DISPRO)
*****LLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEKQEPLEN*DHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASR*****E**************************CVNI*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEKQEPLENEDHLYRSLVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMSFYQPKVEDITTIHEAVDHEKFxxxxxxxxxxxxxxxxxxxxxSRIPESIELEAASFFDGNEVPVPPNSKKKGGIHQCVNITMHEQTHPPVSTQRINT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q9SI38	234	MADS-box transcription fa	no	no	0.312	0.299	0.5	1e-15
O82794	220	MADS-box protein AGL24 OS	no	no	0.308	0.313	0.585	1e-15
Q6EP49	240	MADS-box transcription fa	no	no	0.267	0.25	0.566	3e-15
Q6Z6W2	241	MADS-box transcription fa	no	no	0.267	0.248	0.55	5e-15
Q9SZJ6	228	Agamous-like MADS-box pro	no	no	0.267	0.263	0.55	6e-15
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.267	0.226	0.616	2e-14
Q9S7Q7	196	MADS-box protein FLOWERIN	no	no	0.459	0.525	0.4	3e-14
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.267	0.25	0.516	4e-14
Q03416	209	Floral homeotic protein G	N/A	no	0.361	0.387	0.449	4e-14
Q84NC5	227	MADS-box transcription fa	no	no	0.267	0.264	0.55	5e-14

>sp|Q9SI38|ANR1_ARATH MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 56/70 (80%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          MGR K+++++IDN  + QVT++KRR G++KKAKELS+LCD +VG+++FS +GKL  Y+S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 61 RRIEDIFLRF 70
            ++ I  R+
Sbjct: 61 SSMKTIIERY 70

Probable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          M R K+ ++KIDN  A QVT++KRR GI KKA ELSVLCD DV L++FS +GKL ++SSS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61 RRIEDIFLRF 70
           R+ DI  R+
Sbjct: 61 -RMRDILGRY 69

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 52/60 (86%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          MGR K+++++IDN  + QVT++KRR+GI KKAKEL++LCD +VGL++FS +G+L +YSS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 53/60 (88%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          MGR K+++++IDN  + QVT++KRR+G++KKAKELS+LCD +VGL++FS +G+L ++SS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSST 60

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 51/60 (85%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          MGR K+++Q+ID+  + QVT++KRR G++KKAKEL++LCD +VGL++FS +GKL  ++SS
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          M R K+ ++KIDN  A QVT++KRR G+ KKA+ELSVLCD DV L++FS +GKL  YSSS
Sbjct: 1  MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|Q9S7Q7|FLC_ARATH MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR+KL +++I+N  + QVT++KRR+G+++KA++LSVLCD  V LL+ S SGKL  +SS 
Sbjct: 1   MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSG 60

Query: 61  RRIEDIFLRFICDEKQEPLENEDHLYRSLVHSKCEGEMLDLIKKK 105
             +  I  R+   +  + L+  DH  ++L +     E+L+L+  K
Sbjct: 61  DNLVKILDRY-GKQHADDLKALDHQSKALNYG-SHYELLELVDSK 103

Putative transcription factor that seems to play a central role in the regulation of flowering time in the late-flowering phenotype by interacting with 'FRIGIDA', the autonomous and the vernalization flowering pathways. Inhibits flowering by repressing 'SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1'.

Arabidopsis thaliana (taxid: 3702)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 51/60 (85%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          MGR K+ +++I+N  + QVT++KRR+G++KKAKEL++LCD +VG+++FS +G+L  +SSS
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q03416|GLOB_TOBAC Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 62/89 (69%), Gaps = 8/89 (8%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          MGR K+ +++I+N    QVTY+KRR+GI+KKAKE+SVLCD  V +++F+ SGK+ ++SS+
Sbjct: 1  MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSST 60

Query: 61 RRIEDIFLRF-------ICDEKQEPLENE 82
            + DI  ++       + D K E L+NE
Sbjct: 61 SLV-DILDQYHKLTGRRLWDAKHENLDNE 88

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Nicotiana tabacum (taxid: 4097)

>sp|Q84NC5|MAD25_ORYSJ MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 49/60 (81%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          MGR K+ +++IDN    QVT++KRR G++KKA+EL++LCD DVGL++FS +G+L  +SSS
Sbjct: 1  MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSS 60

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
359485686	237	PREDICTED: MADS-box transcription factor	0.709	0.670	0.449	1e-33
147807337	247	hypothetical protein VITISV_009173 [Viti	0.75	0.680	0.415	2e-33
343160415	335	MADS2 protein [Aristolochia fimbriata]	0.839	0.561	0.356	5e-25
115467168	360	Os06g0223300 [Oryza sativa Japonica Grou	0.727	0.452	0.382	3e-24
356551640	347	PREDICTED: MADS-box transcription factor	0.816	0.527	0.338	2e-23
218188429	360	hypothetical protein OsI_02366 [Oryza sa	0.727	0.452	0.376	4e-23
356550807	347	PREDICTED: MADS-box transcription factor	0.816	0.527	0.328	5e-23
255626959	235	unknown [Glycine max]	0.816	0.778	0.338	5e-23
226529682	367	MADS-box protein AGL66 [Zea mays] gi|195	0.861	0.525	0.327	1e-21
413944116	390	putative MADS-box transcription factor f	0.883	0.507	0.330	2e-21

>gi|359485686|ref|XP_003633312.1| PREDICTED: MADS-box transcription factor 56-like [Vitis vinifera]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/178 (44%), Positives = 111/178 (62%), Gaps = 19/178 (10%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR+KL+MQK+ N  + QVT+TKR+DGIVKKA ELS+LC  DVGL+MFSP G+   ++S 
Sbjct: 1   MGRKKLVMQKLGNPSSRQVTFTKRKDGIVKKATELSILCGADVGLIMFSPKGRSITFASG 60

Query: 61  RRIEDIFLRFICDEKQEPLENEDHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQF 120
            R+EDIF+R+I    +  L  +  +        C+G           LE+ L E+ E+  
Sbjct: 61  GRVEDIFIRWIAQAAE--LTGQGPI--------CDGGA---------LEESLYEIKEQIL 101

Query: 121 DAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASRIPESIEL 178
            AEEKM  Y P VE I T+HEA +H++FL  AI+R+E+L  KLL  +     PES ++
Sbjct: 102 AAEEKMRIYNPDVEKINTVHEAQEHQQFLVDAIQRIEQLKVKLLSDQITLEKPESSQV 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807337|emb|CAN77533.1| hypothetical protein VITISV_009173 [Vitis vinifera]

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 27/195 (13%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR+KL+MQK+ N  + QVT+TKR+DGIVKKA ELS+LC  DVGL+MFSP G+   ++S 
Sbjct: 1   MGRKKLVMQKLGNPSSRQVTFTKRKDGIVKKATELSILCGADVGLIMFSPKGRSITFASG 60

Query: 61  RRIEDIFLRFICDEKQEPLENEDHLYRSLVHSKCEGEMLDLIKKKEELEKKLIELCERQF 120
            R+EDIF+R+I                         +  +L  +   LE+ L E+ E+  
Sbjct: 61  GRVEDIFIRWIA------------------------QAAELTGQGFALEESLYEIKEQIL 96

Query: 121 DAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASRIPESIELEA 180
            AEEKM  Y P VE I T+HEA +H++FL  AI+R+E+L  KLL  +     PES ++  
Sbjct: 97  AAEEKMRIYNPDVEKINTVHEAQEHQQFLVDAIQRIEQLKVKLLSDQITLEKPESSQVR- 155

Query: 181 ASFFDGNEVPVPPNS 195
               D   +P  P +
Sbjct: 156 --LLDDQILPQKPGN 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343160415|emb|CBJ21246.1| MADS2 protein [Aristolochia fimbriata]

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 14/202 (6%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR KL +++I+N    QVT++KRR+G++KKA EL +LCD D+ L+MFSPSG+L+ +S  
Sbjct: 1   MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELCILCDIDIALIMFSPSGRLSHFSGK 60

Query: 61  RRIEDIFLRFIC---DEKQEPLENEDHLYRSLVHSKCEGEMLDLIKKKEELEKKLIEL-- 115
           +RIED+  RFI     +++  + N ++L R+L   KCE ++   +     +  ++ EL  
Sbjct: 61  KRIEDVLTRFISLPDHDREGAIHNREYLIRTLKKLKCESDVAAQLANPGAVNAQIEELQQ 120

Query: 116 ----CERQFD-AEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESAS 170
                + Q   AEE+++ ++P     T++ E  D EKFL  A+ RV +    LL     S
Sbjct: 121 EINGHQHQIQMAEEQLTVFEPDPLRFTSMEEFDDSEKFLVDALTRVTQRKKFLLSNHLPS 180

Query: 171 RIPESIELEAASFFDGNEVPVP 192
             P SI +    + D  E   P
Sbjct: 181 YDPSSIPV----YLDSQEGLAP 198

Source: Aristolochia fimbriata

Species: Aristolochia fimbriata

Genus: Aristolochia

Family: Aristolochiaceae

Order: Piperales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115467168|ref|NP_001057183.1| Os06g0223300 [Oryza sativa Japonica Group] gi|51536054|dbj|BAD38180.1| putative MADS-box protein [Oryza sativa Japonica Group] gi|113595223|dbj|BAF19097.1| Os06g0223300 [Oryza sativa Japonica Group] gi|215767185|dbj|BAG99413.1| unnamed protein product [Oryza sativa Japonica Group] gi|222635227|gb|EEE65359.1| hypothetical protein OsJ_20643 [Oryza sativa Japonica Group] gi|343160417|emb|CBJ21247.1| MADS63 protein [Oryza sativa Japonica Group]

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 15/178 (8%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR KL +++I+N P  QVT++KRR+G++KKA ELSVLCD D+ LLMFSPSG+L+ +S  
Sbjct: 1   MGRVKLQIKRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFSGR 60

Query: 61  RRIEDIFLRFIC---DEKQEPLENEDHLYRSLVHSKCEGEML-DLIKKK---------EE 107
           RRIED+  R+I     ++   ++N ++L   L   KCE ++  DL             EE
Sbjct: 61  RRIEDVLTRYINLPESDRGGTIQNREYLINMLTQLKCESDVTEDLTNTSSKAPVNSNIEE 120

Query: 108 LEKKLIELCERQFD-AEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLL 164
           L+++ I  C+ Q    EE++  ++P      ++ +    EKF+   + RVE+    LL
Sbjct: 121 LQQE-IRRCQHQMQLTEEQLRMFEPDPARSASMEDVEASEKFIAGILSRVEERKRYLL 177

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551640|ref|XP_003544182.1| PREDICTED: MADS-box transcription factor 1 [Glycine max]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 116/204 (56%), Gaps = 21/204 (10%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR KL +++I+N    QVT++KRR+G++KKA ELS+LCD D+ ++MFSPSG+L  +S  
Sbjct: 22  MGRVKLEIKRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRLNHFSGR 81

Query: 61  RRIEDIFLRFICDEKQE--------------PLENEDHLYRSLVHSKCEGEML------- 99
           RRIED+F R+I    QE               ++N+++L R+L   + E ++        
Sbjct: 82  RRIEDVFTRYINLPDQERDNAVSFPELPYRRSIQNKEYLLRTLQQLRSENDIALQLANPG 141

Query: 100 DLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKL 159
           D+  + EEL++++  L ++   AEE++  Y+P    ++++ +  + EK L   + RV + 
Sbjct: 142 DINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMADLENSEKHLVDVLTRVIQR 201

Query: 160 NAKLLQKESASRIPESIELEAASF 183
              LL    +S  P  I+    SF
Sbjct: 202 KEYLLSNHLSSYDPSGIQGIPTSF 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218188429|gb|EEC70856.1| hypothetical protein OsI_02366 [Oryza sativa Indica Group]

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 15/178 (8%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR KL +++I+N    QVT++KRR+G++KKA ELSVLCD D+ LLMFSPSG+L+ +S  
Sbjct: 1   MGRVKLQIKRIENIQNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFSGR 60

Query: 61  RRIEDIFLRFIC---DEKQEPLENEDHLYRSLVHSKCEGEML-DLIKKK---------EE 107
           RRIED+  R+I     ++   ++N ++L   L   KCE ++  DL             EE
Sbjct: 61  RRIEDVLTRYINLPESDRGGTIQNREYLINMLTQLKCESDVTEDLTNTSSKAPVNSNIEE 120

Query: 108 LEKKLIELCERQFD-AEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLL 164
           L+++ I  C+ Q    EE++  ++P      ++ +    EKF+   + RVE+    LL
Sbjct: 121 LQQE-IRRCQHQMQLTEEQLRMFEPDPARSASMEDVEASEKFIAGILSRVEERKRHLL 177

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550807|ref|XP_003543775.1| PREDICTED: MADS-box transcription factor 1-like, partial [Glycine max]

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 116/204 (56%), Gaps = 21/204 (10%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR KL +++I+N    QVT++KRR+G++KKA ELS+LCD D+ ++MFSPSG++  +S  
Sbjct: 14  MGRVKLEIKRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGR 73

Query: 61  RRIEDIFLRFICDEKQ--------------EPLENEDHLYRSLVHSKCEGEML------- 99
           RRIED+F R+I    Q                ++N+++L R+L   + E ++        
Sbjct: 74  RRIEDVFTRYINLPDQVRDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPG 133

Query: 100 DLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKL 159
           D+  + EEL++++ +L ++    EE++  Y+P    ++T+ +  + EK+L   + RV + 
Sbjct: 134 DINSEIEELQQEVNKLQQQLQMTEEQIRLYEPDPLKMSTMADLENSEKYLVDVLTRVIQR 193

Query: 160 NAKLLQKESASRIPESIELEAASF 183
              LL    +S  P  I+    SF
Sbjct: 194 KEYLLSNHLSSYDPSGIQGIPTSF 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626959|gb|ACU13824.1| unknown [Glycine max]

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 116/204 (56%), Gaps = 21/204 (10%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR KL +++I+N    QVT++KRR+G++KKA ELS+LCD D+ ++MFSPSG+L  +S  
Sbjct: 22  MGRVKLEIKRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRLNHFSGR 81

Query: 61  RRIEDIFLRFICDEKQE--------------PLENEDHLYRSLVHSKCEGEML------- 99
           RRIED+F R+I    QE               ++N+++L R+L   + E ++        
Sbjct: 82  RRIEDVFTRYINLPDQERDNAVGFPELPYRRSIQNKEYLLRTLQQLRSENDIALQLANPG 141

Query: 100 DLIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKL 159
           D+  + EEL++++  L ++   AEE++  Y+P    ++++ +  + EK L   + RV + 
Sbjct: 142 DINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMADLENSEKHLVDVLTRVIQR 201

Query: 160 NAKLLQKESASRIPESIELEAASF 183
              LL    +S  P  I+    SF
Sbjct: 202 KEYLLSNHLSSYDPSGIQGIPTSF 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226529682|ref|NP_001148603.1| MADS-box protein AGL66 [Zea mays] gi|195620702|gb|ACG32181.1| MADS-box protein AGL66 [Zea mays]

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 121/217 (55%), Gaps = 24/217 (11%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR KL +++I+N    QVT++KRR+G++KKA ELSVLCD D+ L+MFSPS +L+ +S  
Sbjct: 1   MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFSGR 60

Query: 61  RRIEDIFLRFIC---DEKQEPLENEDHLYRSLVHSKCEGEMLD-LIKKKEELEKKLIEL- 115
           RRIED+  R+I     ++   + N ++L + L   KCEG + + L   KE +   + EL 
Sbjct: 61  RRIEDVITRYINLPEHDRGGVVRNREYLMKMLAKLKCEGNIAEQLTPNKEPINSNVEELQ 120

Query: 116 -----CERQFDA-EEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKE-- 167
                 + Q +  +E++  ++P +  + ++++    EKFL   +  VE+    LL     
Sbjct: 121 QEIKTYQHQMEVLKEQLRMFEPDLTTLMSMNDFETCEKFLMDTLTCVEERKKYLLCNHVA 180

Query: 168 ----SASRIPESIELEAASFFDGNEVPVPPNSKKKGG 200
               SAS + + +++ A         P PP+ +++ G
Sbjct: 181 PFDPSASNMQQHVDMFALP-------PAPPHQQEQQG 210

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413944116|gb|AFW76765.1| putative MADS-box transcription factor family protein [Zea mays]

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 119/212 (56%), Gaps = 14/212 (6%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           MGR KL +++I+N    QVT++KRR+G++KKA ELSVLCD D+ L+MFSPS +L+ +S  
Sbjct: 25  MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFSGR 84

Query: 61  RRIEDIFLRFIC---DEKQEPLENEDHLYRSLVHSKCEGEMLD-LIKKKEELEKKLIEL- 115
           RRIED+  R+I     ++   + N ++L + L   KCEG + + L   KE +   + EL 
Sbjct: 85  RRIEDVITRYINLPEHDRGGVVRNREYLMKMLAKLKCEGNIAEQLTPNKEPINSNVEELQ 144

Query: 116 -----CERQFDA-EEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESA 169
                 + Q +  +E++  ++P +  + ++++    EKFL   +  VE+    LL    A
Sbjct: 145 QEIKTYQHQMEVLKEQLRMFEPDLTTLMSMNDFETCEKFLMDTLTCVEERKKYLLCNHVA 204

Query: 170 SRIPESIELEA-ASFFDGNEVPVPPNSKKKGG 200
              P + +++     F     P PP+ +++ G
Sbjct: 205 PFDPSASDMQQHVDMF--ALPPAPPHQQEQQG 234

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2029386	332	AGL66 "AGAMOUS-like 66" [Arabi	0.343	0.231	0.531	5.6e-22
TAIR|locus:2030621	335	AGL104 "AGAMOUS-like 104" [Ara	0.370	0.247	0.534	1.8e-21
TAIR|locus:2029411	252	AGL67 "AGAMOUS-like 67" [Arabi	0.424	0.376	0.412	4.3e-18
TAIR|locus:2042182	234	AGL44 "AGAMOUS-like 44" [Arabi	0.361	0.346	0.475	1.3e-15
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.312	0.316	0.514	1.4e-15
TAIR|locus:2040819	172	AGL29 "AGAMOUS-like 29" [Arabi	0.383	0.5	0.370	1.4e-15
TAIR|locus:2121924	220	AGL24 "AT4G24540" [Arabidopsis	0.308	0.313	0.585	2e-15
TAIR|locus:2121070	228	AGL21 "AT4G37940" [Arabidopsis	0.267	0.263	0.55	2.3e-14
DICTYBASE|DDB_G0268920	1050	srfC "putative MADS-box transc	0.370	0.079	0.406	2.4e-14
TAIR|locus:2102871	249	AGL79 "AGAMOUS-like 79" [Arabi	0.312	0.281	0.5	3e-14

TAIR|locus:2029386 AGL66 "AGAMOUS-like 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 5.6e-22, Sum P(2) = 5.6e-22
 Identities = 42/79 (53%), Positives = 61/79 (77%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             MGR KL +++I+N    QVT++KRR+G++KKA ELS+LCD D+ LLMFSPS +L+ +S  
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFSGK 60

Query:    61 RRIEDIFLRFI--CDEKQE 77
              RIED+F R+I   D+++E
Sbjct:    61 TRIEDVFSRYINLSDQERE 79

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2030621 AGL104 "AGAMOUS-like 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
 Identities = 46/86 (53%), Positives = 62/86 (72%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             MGR KL +++I+N    QVT++KRR+G++KKA ELS+LCD D+ L+MFSPS +L+ +S  
Sbjct:     1 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFSGK 60

Query:    61 RRIEDIFLRFICDEKQEPLENEDHLY 86
              RIED+F RFI   KQE    E  LY
Sbjct:    61 TRIEDVFSRFINLPKQE---RESALY 83

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009555 "pollen development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2029411 AGL67 "AGAMOUS-like 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
 Identities = 45/109 (41%), Positives = 69/109 (63%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             MGR KL +++I+     Q+T++KR+ G++KKA ELS LCD D+ LLMFSPS +L  +S  
Sbjct:     1 MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSGQ 60

Query:    61 RRIEDIFLRFIC--DEKQE-----P-------LENEDHLYRSLVHSKCE 95
              RIED+  R+I   D+++E     P       ++N+++L R+L   K E
Sbjct:    61 TRIEDVLARYINLPDQERENAIVFPDQSKRQGIQNKEYLLRTLEKLKIE 109

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2042182 AGL44 "AGAMOUS-like 44" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/82 (47%), Positives = 61/82 (74%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             MGR K+++++IDN  + QVT++KRR G++KKAKELS+LCD +VG+++FS +GKL  Y+S+
Sbjct:     1 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query:    61 RRIEDIFLRFI-CDEKQEPLEN 81
               ++ I  R+    E+Q  L N
Sbjct:    61 SSMKTIIERYNRVKEEQHQLLN 82

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0007584 "response to nutrient" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071249 "cellular response to nitrate" evidence=IEP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010167 "response to nitrate" evidence=IMP

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             M R K  M++I+N  + QVT++KRR+G++KKA ELSVLCD +V L++FSP GKL ++SSS
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query:    61 RRIEDIFLRF 70
               I     R+
Sbjct:    61 SSIPKTVERY 70

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2040819 AGL29 "AGAMOUS-like 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 33/89 (37%), Positives = 53/89 (59%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             MGRRK+ M+ + +    QVT++KRR G+ KKA EL+ LC+ ++G+++FSP GK   Y   
Sbjct:     1 MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query:    61 RRIEDIFLRFI--CDEKQEPLENEDHLYR 87
               ++ +  RF+   D+     E +   YR
Sbjct:    61 N-LDSVAERFMREYDDSDSGDEEKSGNYR 88

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2121924 AGL24 "AT4G24540" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 41/70 (58%), Positives = 53/70 (75%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             M R K+ ++KIDN  A QVT++KRR GI KKA ELSVLCD DV L++FS +GKL ++SSS
Sbjct:     1 MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query:    61 RRIEDIFLRF 70
             R + DI  R+
Sbjct:    61 R-MRDILGRY 69

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010220 "positive regulation of vernalization response" evidence=IEP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2121070 AGL21 "AT4G37940" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 33/60 (55%), Positives = 51/60 (85%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             MGR K+++Q+ID+  + QVT++KRR G++KKAKEL++LCD +VGL++FS +GKL  ++SS
Sbjct:     1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

DICTYBASE|DDB_G0268920 srfC "putative MADS-box transcription factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 183 (69.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 35/86 (40%), Positives = 60/86 (69%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             MGR K+ ++KI N    Q T+TKR++G++KKA ELS+LCD ++ +++FS + KL +YSS 
Sbjct:     3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSS- 61

Query:    61 RRIEDIFLRFI--CDEKQEPLENEDH 84
             R ++ + +R+    D  ++ L N+D+
Sbjct:    62 RDMDKLLIRYTDNTDNTRKNLTNQDY 87

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2102871 AGL79 "AGAMOUS-like 79" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 35/70 (50%), Positives = 53/70 (75%)

Query:     1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
             MGR ++ +++I+N    QVT++KRR G+VKKA+E+SVLCD +V L++FSP GKL +YS+ 
Sbjct:     1 MGRGRVQLRRIENKIRRQVTFSKRRTGLVKKAQEISVLCDAEVALIVFSPKGKLFEYSAG 60

Query:    61 RRIEDIFLRF 70
               +E I  R+
Sbjct:    61 SSMERILDRY 70

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: 4340529 OsMADS63 - MADS-box family gene with MIKC* type-box, expressed (360 aa) (Oryza sativa Japonica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	9e-24
smart00432	59	smart00432, MADS, MADS domain	2e-23
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	5e-22
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	6e-21
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-15
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	7e-06

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 89.9 bits (224), Expect = 9e-24
 Identities = 35/69 (50%), Positives = 52/69 (75%), Gaps = 1/69 (1%)

Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR K+ +++I+N    QVT++KRR+G++KKA ELSVLCD +V L++FS SGKL ++SS  
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP- 59

Query: 62 RIEDIFLRF 70
           +E I  R+
Sbjct: 60 SMEKIIERY 68

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 88.4 bits (220), Expect = 2e-23
 Identities = 32/59 (54%), Positives = 48/59 (81%)

Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          GRRK+ +++I+N    QVT++KRR+G+ KKA ELSVLCD +V L++FSP+GKL +++S 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 84.9 bits (211), Expect = 5e-22
 Identities = 32/59 (54%), Positives = 48/59 (81%)

Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          GR K+ +++I+N  + QVT++KRR+G+ KKA ELSVLCD +V +++FSPSGKL ++ SS
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 82.7 bits (205), Expect = 6e-21
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR+K+ +++I+N     VT++KRR G+ KKA ELS LC  +V ++++SPSGKL  +  S 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 RIEDIFLRFICDEKQEPLENEDH 84
           +E +  RF   E    LE +  
Sbjct: 61 EVEGVISRF---EVLSALERKKK 80

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 67.4 bits (165), Expect = 2e-15
 Identities = 29/49 (59%), Positives = 39/49 (79%)

Query: 11 IDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSS 59
          I+N    QVT++KRR+GI KKA ELSVLCD +V +++FS +GKL +YSS
Sbjct: 3  IENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 1   MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           +  RK+ +  I N     VT++KR+ GI KKA ELSVL  T+V LL+ S +G +  +++ 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.79
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.46
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.42
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	90.3
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.36

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.7e-36  Score=248.03  Aligned_cols=167  Identities=29%  Similarity=0.366  Sum_probs=116.7

Q ss_pred             CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccch-hhhhHHhhhhcccCC---
Q 027395            1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR-RIEDIFLRFICDEKQ---   76 (224)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~-s~~~VleRY~~~~~~---   76 (224)
                      |||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|++++ +|..|++||......   
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999996553 399999999876322   


Q ss_pred             CCCcchh-HHHHH-hhhccccchhhHhhhhHHHHHHHHHHHHHHHHHH---HHHhhhcCCCCCCCCCH-HHHHHHHHHHH
Q 027395           77 EPLENED-HLYRS-LVHSKCEGEMLDLIKKKEELEKKLIELCERQFDA---EEKMSFYQPKVEDITTI-HEAVDHEKFLN  150 (224)
Q Consensus        77 ~~~~~~~-~l~~~-l~kLk~e~~~~~~~~~~e~L~~el~~L~~q~~~~---~~~~r~~~ge~l~~lSl-~EL~~LE~~Le  150 (224)
                      ......+ .+... +..+..+.+.....  ......+...+....+.+   ....+.+.+.++..+++ .+|..++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~  158 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELK--LQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLE  158 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhcc--chhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHH
Confidence            1111111 11100 11111100000000  001111222222222222   23466778899999999 99999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 027395          151 SAIRRVEKLNAKLLQKESA  169 (224)
Q Consensus       151 ~~L~~Ir~rK~~ll~~qi~  169 (224)
                      ..+..++..+...+.+++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~  177 (195)
T KOG0014|consen  159 SSLHNSRSSKSKPLSDSNF  177 (195)
T ss_pred             HhhcCCCCCCCcCCcchhh
Confidence            9999999988887766654

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=3.2e-34  Score=200.57  Aligned_cols=73  Identities=48%  Similarity=0.797  Sum_probs=69.7

Q ss_pred             CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcccC
Q 027395            2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEK   75 (224)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~~   75 (224)
                      ||+||+|++|||+.+|++||+||++||||||+||||||||+||+|||||+|++|+|+++ ++++||+||...+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~-s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP-SMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCC-CHHHHHHHHHhccc
Confidence            89999999999999999999999999999999999999999999999999999999775 79999999998743

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=2.4e-31  Score=188.70  Aligned_cols=73  Identities=41%  Similarity=0.725  Sum_probs=69.0

Q ss_pred             CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhccc
Q 027395            2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDE   74 (224)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~   74 (224)
                      ||+||+|++|+|+.+|+|||+||+.||||||+||||||||+||+|||||+|+++.|++++++..+++||....
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~   73 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS   73 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence            8999999999999999999999999999999999999999999999999999999976645999999998763

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=7.7e-31  Score=173.42  Aligned_cols=59  Identities=54%  Similarity=0.960  Sum_probs=57.2

Q ss_pred             CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccc
Q 027395            2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS   60 (224)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~   60 (224)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999653

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=3.1e-30  Score=170.69  Aligned_cols=58  Identities=53%  Similarity=0.913  Sum_probs=56.8

Q ss_pred             CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCcccccc
Q 027395            2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSS   59 (224)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s   59 (224)
                      ||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|+++.|++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999965

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=4.1e-29  Score=160.00  Aligned_cols=51  Identities=49%  Similarity=0.869  Sum_probs=46.9

Q ss_pred             EEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCcccccc
Q 027395            9 QKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSS   59 (224)
Q Consensus         9 k~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s   59 (224)
                      |+|+|+..|++||+||+.||||||+|||+||||+||+|||||+|++|+|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999976

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.79  E-value=2e-20  Score=157.22  Aligned_cols=65  Identities=40%  Similarity=0.586  Sum_probs=60.6

Q ss_pred             CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHH
Q 027395            2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIF   67 (224)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~Vl   67 (224)
                      ||+||+|++|||+..|.|||||||.||||||+|||||+|.+|-|+|.|.+|-+|+|+++ .++.||
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTp-KLep~i  127 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATP-KLEPMI  127 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccc-cccccc
Confidence            79999999999999999999999999999999999999999999999999999999886 444444

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.46  E-value=2e-14  Score=126.25  Aligned_cols=67  Identities=37%  Similarity=0.532  Sum_probs=61.9

Q ss_pred             CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHh
Q 027395            1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFL   68 (224)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~Vle   68 (224)
                      |||+|+.|..|+|+.+|.|||+||+.||+|||.||+||.|.+|+++|.|.+|+++.|+++ ..+.|+.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp-~~e~v~~  147 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP-KLESVVK  147 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC-ccccccc
Confidence            789999999999999999999999999999999999999999999999999999999775 4555443

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.42  E-value=6.3e-13  Score=97.64  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=75.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHH-H
Q 027395          101 LIKKKEELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAKLLQKESASRIPESIEL-E  179 (224)
Q Consensus       101 ~~~~~e~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~ll~~qi~~~~~~~~q~-~  179 (224)
                      +....+.+..++.+|+.+++.++..+|++.|++|++||++||+.||++|+.+|.+||+||.+++.+++..++++...+ +
T Consensus        10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~   89 (100)
T PF01486_consen   10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE   89 (100)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567889999999999999999999999999999999999999999999999999999999999999998655444 6


Q ss_pred             hhcccC
Q 027395          180 AASFFD  185 (224)
Q Consensus       180 ~~~~l~  185 (224)
                      +|..|.
T Consensus        90 en~~L~   95 (100)
T PF01486_consen   90 ENNQLR   95 (100)
T ss_pred             HHHHHH
Confidence            666553

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=90.30  E-value=0.047  Score=28.90  Aligned_cols=14  Identities=36%  Similarity=0.695  Sum_probs=11.2

Q ss_pred             eEEEeecCCCCccc
Q 027395           43 VGLLMFSPSGKLTK   56 (224)
Q Consensus        43 ValiifS~~Gkl~~   56 (224)
                      -.+.+|||.|++|.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            34578999999985

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.36  E-value=8.7  Score=30.38  Aligned_cols=55  Identities=22%  Similarity=0.120  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 027395          107 ELEKKLIELCERQFDAEEKMSFYQPKVEDITTIHEAVDHEKFLNSAIRRVEKLNAK  162 (224)
Q Consensus       107 ~L~~el~~L~~q~~~~~~~~r~~~ge~l~~lSl~EL~~LE~~Le~~L~~Ir~rK~~  162 (224)
                      +|...+..|+.++..++.++..+.. .-...|.+|...++..........+.||.-
T Consensus       113 el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKri  167 (169)
T PF07106_consen  113 ELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKRI  167 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444544444444433 223367888888888888888888887753

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		2e-10
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		2e-10
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		3e-10
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		1e-09
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-09
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-09
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-06
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		3e-05
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		4e-05

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR+K+ + +I +    QVT+TKR+ G++KKA ELSVLCD ++ L++F+ S KL +Y+S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 RIEDIFLRFICDEKQEPLEN 81
           ++ + L++   E  EP E+
Sbjct: 60 DMDKVLLKYT--EYNEPHES 77

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR+K+ + +I +    QVT+TKR+ G++KKA ELSVLCD ++ L++F+ S KL +Y+S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 RIEDIFLRFICDEKQEPLEN 81
           ++ + L++   E  EP E+
Sbjct: 60 DMDKVLLKYT--EYNEPHES 77

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
          MGR+K+ + +I +    QVT+TKR+ G++KKA ELSVLCD ++ L++F+ + +L +Y+S+
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 RRIEDIFLRFICDEKQEPLEN 81
            ++ + L++   E  EP E+
Sbjct: 61 -DMDRVLLKY--TEYSEPHES 78

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR+K+ + +I +    QVT+TKR+ G++KKA ELSVL D ++ L++F+ S KL +Y+S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAST- 59
Query: 62 RIEDIFLRFICDEKQEPLEN 81
           ++ + L++   E  EP E+
Sbjct: 60 DMDKVLLKYT--EYNEPHES 77

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR+K+ + +I +    QVT+TKR+ G++KKA ELSVLCD ++ L++F+ + +L +Y+S+ 
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST- 59
Query: 62 RIEDIFLRFICDEKQEPLEN 81
           ++ + L++   E  EP E+
Sbjct: 60 DMDRVLLKYT--EYSEPHES 77

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR+K+ + +I +    QVT+TKR+ G++KKA ELSVLCD ++ L++F+ S KL +Y+S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 RIEDIFLRF 70
           ++ + L++
Sbjct: 60 DMDKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 3  RRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          RRK+ ++ I+N     VT++KR+ GI+KKA ELSVL  T V LL+ S +G +  +S+ +
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 76

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR K+ M+ IDN      T++KR+ GI+KKA ELS L  T V LL+ S +G +  +++ +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 70

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR K+ M+ IDN      T++KR+ GI+KKA ELS L  T V LL+ S +G +  +++ +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	5e-25
1hbx_A	92	SRF, serum response factor; gene regulation, trans	1e-24
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	3e-24
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	3e-24
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 92.9 bits (231), Expect = 5e-25
 Identities = 33/85 (38%), Positives = 57/85 (67%), Gaps = 2/85 (2%)

Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR+K+ + +I +    QVT+TKR+ G++KKA ELSVLCD ++ L++F+ S KL +Y+S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 RIEDIFLRFI-CDEKQEPLENEDHL 85
           ++ + L++   +E  E   N D +
Sbjct: 60 DMDKVLLKYTEYNEPHESRTNSDIV 84

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 92.2 bits (229), Expect = 1e-24
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           GR K+ M+ IDN      T++KR+ GI+KKA ELS L  T V LL+ S +G +  +++ 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 RRIEDIFLRF 70
           +++ +    
Sbjct: 70 -KLQPMITSE 78

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 91.5 bits (227), Expect = 3e-24
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           GR K+ M+ IDN      T++KR+ GI+KKA ELS L  T V LL+ S +G +  +++ 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 RRIEDIFLRF 70
           +++ +    
Sbjct: 69 -KLQPMITSE 77

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 91.4 bits (227), Expect = 3e-24
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
            RRK+ ++ I+N     VT++KR+ GI+KKA ELSVL  T V LL+ S +G +  +S+ 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 RRIEDIFLRF 70
           + E I  + 
Sbjct: 76 -KFEPIVTQQ 84

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 89.0 bits (221), Expect = 2e-23
 Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR+K+ + +I +    QVT+TKR+ G++KKA ELSVLCD ++ L++F+ S KL +Y+S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 RIEDIFLRF 70
           ++ + L++
Sbjct: 60 DMDKVLLKY 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 43/217 (19%), Positives = 64/217 (29%), Gaps = 58/217 (26%)

Query: 4   RKLLMQKIDNYP-ALQVTYTKRRDGIVKKAKELSVL---CDT-----DVGLLMFSPSGKL 54
           R+LL  K   Y   L V      +  V+ AK  +     C          +  F  +   
Sbjct: 235 RRLLKSK--PYENCLLVL----LN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 55  TKYSSSRRI--------EDIFLRFI-CDEKQEPLENEDH--LYRSLVHSKCEGEMLDLIK 103
           T  S             + + L+++ C  +  P E         S++      + L    
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWD 345

Query: 104 --KKEELEK--KLIELCERQFDAEEKMSFYQ-----PKVEDITTI--------HEAVDHE 146
             K    +K   +IE      +  E    +      P    I TI            D  
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 147 KFLNSAIRRVEKLNAKLL----QKESASRIPESIELE 179
             +N       KL+   L     KES   IP SI LE
Sbjct: 406 VVVN-------KLHKYSLVEKQPKESTISIP-SIYLE 434

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=6.1e-40  Score=232.40  Aligned_cols=74  Identities=39%  Similarity=0.700  Sum_probs=70.8

Q ss_pred             CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcccCC
Q 027395            2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDEKQ   76 (224)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~~~   76 (224)
                      ||+||+|++|||+++|||||||||+||||||+||||||||+||||||||+|++|+|+| ++|+.||+||..+...
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~   74 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEP   74 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcc
Confidence            8999999999999999999999999999999999999999999999999999999987 5899999999988544

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.2e-39  Score=225.53  Aligned_cols=72  Identities=40%  Similarity=0.722  Sum_probs=69.0

Q ss_pred             CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhccc
Q 027395            2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICDE   74 (224)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~~   74 (224)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+|+ +|+.||+||....
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~-~~~~il~ry~~~~   72 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYN   72 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHC-
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC-CHHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999875 7999999998774

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=7.1e-38  Score=225.43  Aligned_cols=72  Identities=39%  Similarity=0.502  Sum_probs=69.0

Q ss_pred             CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395            1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD   73 (224)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~   73 (224)
                      |||+||+|++|||+.+|||||+|||+||||||+||||||||+||||||||+|++|+|+|+ ++..|++||...
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp-s~~~il~r~~G~   87 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP-KFEPIVTQQEGR   87 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT-TTTHHHHSHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC-CHHHHHHHhhCC
Confidence            899999999999999999999999999999999999999999999999999999999775 899999999654

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1.1e-37  Score=221.77  Aligned_cols=70  Identities=37%  Similarity=0.507  Sum_probs=67.5

Q ss_pred             CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhh
Q 027395            1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFI   71 (224)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~   71 (224)
                      |||+||+|++|||+.+|||||+|||+||||||+||||||||+||||||||+|++|+|+| |+|+.||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s-~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC-GGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC-CCHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999977 58999999774

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=4.7e-37  Score=222.55  Aligned_cols=70  Identities=37%  Similarity=0.507  Sum_probs=67.2

Q ss_pred             CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhh
Q 027395            1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFI   71 (224)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~   71 (224)
                      |||+||+|++|||+.+|||||||||+||||||+||||||||+||||||||+|++|+|+| ++|+.||+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-~~~~~vi~~~~   78 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET   78 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC-GGGGGGTSSHH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC-ccHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999976 48999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	4e-22
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	9e-21
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-20

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (207), Expect = 4e-22
 Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
          GR+K+ + +I +    QVT+TKR+ G++KKA ELSVLCD ++ L++F+ S KL +Y+S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 RIEDIFLRF 70
           ++ + L++
Sbjct: 60 DMDKVLLKY 68

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (200), Expect = 9e-21
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 2  GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSR 61
           RRK+ ++ I+N     VT++KR+ GI+KKA ELSVL  T V LL+ S +G +  +S+  
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP- 61

Query: 62 RIEDIFLRF 70
          + E I  + 
Sbjct: 62 KFEPIVTQQ 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (199), Expect = 1e-20
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 1  MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSS 60
           GR K+ M+ IDN      T++KR+ GI+KKA ELS L  T V LL+ S +G +  +++ 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 RRIEDIFLRF 70
           +++ +    
Sbjct: 62 -KLQPMITSE 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=219.82  Aligned_cols=71  Identities=41%  Similarity=0.720  Sum_probs=68.5

Q ss_pred             CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395            2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD   73 (224)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~   73 (224)
                      ||+||+|++|||+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+| |++++||+||.++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s-~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHhcC
Confidence            8999999999999999999999999999999999999999999999999999999987 5899999999763

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=214.28  Aligned_cols=72  Identities=36%  Similarity=0.486  Sum_probs=68.9

Q ss_pred             CCcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395            1 MGRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD   73 (224)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~   73 (224)
                      +||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+| |+++.|++||...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s-~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEEC-GGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999976 5899999999754

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-37  Score=213.19  Aligned_cols=71  Identities=39%  Similarity=0.510  Sum_probs=68.4

Q ss_pred             CcccceeEEecCCCCccceecccccchhhhhhhhhhccCCceEEEeecCCCCccccccchhhhhHHhhhhcc
Q 027395            2 GRRKLLMQKIDNYPALQVTYTKRRDGIVKKAKELSVLCDTDVGLLMFSPSGKLTKYSSSRRIEDIFLRFICD   73 (224)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCda~ValiifS~~Gkl~~f~s~~s~~~VleRY~~~   73 (224)
                      ||+||+|++|+|+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+| |+|+.|++||...
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~s-p~v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccC-CCHHHHHHHHhcc
Confidence            8999999999999999999999999999999999999999999999999999999966 5899999999865